BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764482|ref|YP_003065169.2| methyltransferase protein
[Candidatus Liberibacter asiaticus str. psy62]
         (225 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764482|ref|YP_003065169.2| methyltransferase protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 225

 Score =  461 bits (1187), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 225/225 (100%), Positives = 225/225 (100%)

Query: 1   MILASLVNATGSFHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPAN 60
           MILASLVNATGSFHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPAN
Sbjct: 1   MILASLVNATGSFHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLALPAN 60

Query: 61  AQISKRISLIEVDVTLVGENRNLAGLKNNFYDHVIMNPPFNERIGTMTPDKIKEEAHVML 120
           AQISKRISLIEVDVTLVGENRNLAGLKNNFYDHVIMNPPFNERIGTMTPDKIKEEAHVML
Sbjct: 61  AQISKRISLIEVDVTLVGENRNLAGLKNNFYDHVIMNPPFNERIGTMTPDKIKEEAHVML 120

Query: 121 EDSFEKWIRTACAIMRSSGQLSLIARPQSLIQIVNACARRIGSLEITPLHPREGECASRI 180
           EDSFEKWIRTACAIMRSSGQLSLIARPQSLIQIVNACARRIGSLEITPLHPREGECASRI
Sbjct: 121 EDSFEKWIRTACAIMRSSGQLSLIARPQSLIQIVNACARRIGSLEITPLHPREGECASRI 180

Query: 181 LVTGRKGMRGQLRFRYPIVLHKPNGQPYSRFVTDLINGKRSLTRL 225
           LVTGRKGMRGQLRFRYPIVLHKPNGQPYSRFVTDLINGKRSLTRL
Sbjct: 181 LVTGRKGMRGQLRFRYPIVLHKPNGQPYSRFVTDLINGKRSLTRL 225


>gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 762

 Score = 25.4 bits (54), Expect = 0.82,   Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 98  PPFNERIGTMTPDKIKE 114
           PP NE+  T TP KIK+
Sbjct: 27  PPSNEQTTTSTPSKIKK 43


>gi|254780402|ref|YP_003064815.1| 3-deoxy-D-manno-octulosonic-acid transferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 440

 Score = 23.5 bits (49), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 18/44 (40%)

Query: 13  FHLADLGAGAGAAGLAVASRLHEAQILLAERSPLMAHYARKTLA 56
           FH + +G      GL  A R     +LL   +   A  ARK L 
Sbjct: 61  FHASSVGETMALIGLIPAIRSRHVNVLLTTMTATSAKVARKYLG 104


>gi|255764501|ref|YP_003064973.2| thiamine transporter membrane protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 535

 Score = 23.1 bits (48), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 14/34 (41%)

Query: 82  NLAGLKNNFYDHVIMNPPFNERIGTMTPDKIKEE 115
           NL G+K     HV  N P   R+     D I  E
Sbjct: 135 NLYGIKGILLVHVFFNMPLAIRMLLQALDSISIE 168


>gi|254781017|ref|YP_003065430.1| GHMP kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 324

 Score = 22.3 bits (46), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 141 LSLIARPQSLIQIVNACARRIGSLEITPLHP 171
           L L  R   LI I ++  +  GSL++   HP
Sbjct: 41  LYLTLRKDRLINIDSSLGQYCGSLDLAMFHP 71


>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
          Length = 647

 Score = 21.9 bits (45), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 161 IGSLEITPLHPREGECASRILVTGRKGMRGQLRFRYPIVL 200
           +GS  +  L  ++ E +SR +  G  G+   L   +P+VL
Sbjct: 68  VGSKLLDKLQSKDIEISSRPVNDGSPGLLSYLGSWFPLVL 107


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.136    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,582
Number of Sequences: 1233
Number of extensions: 4894
Number of successful extensions: 15
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 8
length of query: 225
length of database: 328,796
effective HSP length: 71
effective length of query: 154
effective length of database: 241,253
effective search space: 37152962
effective search space used: 37152962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)