Query gi|255764483|ref|YP_003065151.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 135
No_of_seqs 123 out of 228
Neff 4.3
Searched_HMMs 33803
Date Wed Jun 1 14:11:04 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764483.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1f1s_A Hyaluronate lyase; the 94.6 0.33 9.6E-06 27.1 8.9 67 31-105 11-77 (78)
2 >1f00_I Intimin; immunoglobuli 66.3 7.7 0.00023 19.0 3.8 59 33-95 14-80 (87)
3 >3i1n_D 50S ribosomal protein 62.7 8.9 0.00026 18.6 3.5 36 74-112 3-38 (138)
4 >1hux_A Activator of (R)-2-hyd 52.7 15 0.00045 17.3 3.3 36 73-108 3-40 (127)
5 >3g25_A Glycerol kinase; IDP00 51.1 17 0.00052 16.9 3.8 33 71-103 4-38 (109)
6 >2w40_A Glycerol kinase, putat 46.8 20 0.00061 16.5 3.8 31 73-103 4-36 (110)
7 >1cwv_A Invasin; integrin-bind 45.8 12 0.00035 17.9 1.9 52 57-108 4-55 (104)
8 >3hx6_A Type 4 fimbrial biogen 45.7 17 0.00052 16.9 2.8 34 59-92 2-35 (53)
9 >3h3n_X Glycerol kinase; ATP-b 43.6 23 0.00068 16.2 3.8 33 73-105 5-39 (107)
10 >3hz6_A Xylulokinase; xylulose 36.0 30 0.0009 15.5 4.1 33 72-104 4-38 (241)
11 >1tdz_A Formamidopyrimidine-DN 35.3 25 0.00075 16.0 2.2 22 107-129 114-135 (136)
12 >1ee8_A MUTM (FPG) protein; be 33.6 33 0.00098 15.3 2.8 25 107-132 23-47 (47)
13 >3ifr_A Carbohydrate kinase, F 32.5 35 0.001 15.2 3.2 34 72-105 6-41 (242)
14 >1cwv_A Invasin; integrin-bind 32.1 14 0.00041 17.5 0.5 51 59-111 2-52 (98)
15 >3gbt_A Gluconate kinase; LBA0 31.2 36 0.0011 15.0 3.6 32 73-104 4-37 (237)
16 >2zqk_A Intimin; protein-prote 30.5 38 0.0011 15.0 3.6 58 32-94 28-86 (94)
17 >2bbk_H Methylamine dehydrogen 30.3 38 0.0011 14.9 4.0 34 66-99 55-88 (104)
18 >1tdh_A NEI endonuclease VIII- 30.2 31 0.00092 15.4 2.0 24 109-133 113-136 (209)
19 >2dpn_A Glycerol kinase; therm 29.9 38 0.0011 14.9 3.3 31 74-104 3-35 (241)
20 >3doa_A Fibrinogen binding pro 29.4 39 0.0012 14.9 5.0 56 43-98 47-141 (165)
21 >3l0q_A Xylulose kinase; xlylu 29.1 40 0.0012 14.8 3.5 30 73-102 5-36 (297)
22 >3gf8_A Putative polysaccharid 27.7 39 0.0011 14.9 2.2 10 78-87 147-156 (296)
23 >2d4w_A Glycerol kinase; alpha 26.5 44 0.0013 14.5 3.8 32 74-105 3-36 (244)
24 >3i8b_A Xylulose kinase; strai 24.6 48 0.0014 14.3 3.6 30 73-102 5-37 (163)
25 >2gop_A Trilobed protease; bet 23.8 50 0.0015 14.2 4.5 35 60-96 47-81 (83)
26 >1woq_A Inorganic polyphosphat 23.3 51 0.0015 14.2 3.6 40 69-108 8-49 (143)
27 >1cwv_A Invasin; integrin-bind 23.2 7.8 0.00023 19.0 -2.1 49 58-108 2-50 (99)
28 >2zf5_O Glycerol kinase; hyper 21.2 56 0.0017 13.9 4.1 31 74-104 4-36 (238)
29 >2itm_A Xylulose kinase, xylul 21.2 56 0.0017 13.9 3.5 31 74-104 1-33 (231)
30 >3a46_A Formamidopyrimidine-DN 21.1 42 0.0012 14.7 1.3 17 113-130 129-145 (146)
31 >2e2o_A Hexokinase; acetate an 20.6 58 0.0017 13.9 2.7 29 74-102 3-33 (130)
No 1
>>1f1s_A Hyaluronate lyase; the structure consists of three distinct structural domains: two beta domains at two terminals and one alpha domain in the middle of the sequence.; 2.10A {Streptococcus agalactiae} (A:1-78)
Probab=94.60 E-value=0.33 Score=27.11 Aligned_cols=67 Identities=10% Similarity=0.216 Sum_probs=54.7
Q ss_pred CCCEEEEEECCEEEEECCCCCEEEEECCCCEEEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEEEEEEC
Q ss_conf 762799960828999847665027832844178998179988999960577089999879998899889999727
Q gi|255764483|r 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105 (135)
Q Consensus 31 ~s~~i~v~vgks~il~l~~p~~~V~VgnP~IADv~~l~~~~~i~v~GK~~G~Tnliv~d~~g~~i~~~~i~V~~~ 105 (135)
-.++|.++.||--++..+ =-.--|.|+.||-+. + . +|...+.|.|+|.|+|.+|+.|...-+.|.+.
T Consensus 11 lE~~I~l~l~K~yv~~~~--dY~Y~i~n~sia~ve---n-G--~i~Plk~G~T~v~V~dk~Gk~i~~ipL~Vt~s 77 (78)
T 1f1s_A 11 IEKSVNTALNKNYVFNKA--DYQYTLTNPSLGKIV---G-G--ILYPNATGSTTVKISDKSGKIIKEVPLSVTAS 77 (78)
T ss_dssp CCSCEEEETTSCEECSST--TSEEEESSGGGEEEE---T-T--EEEECSCEEEEEEEECTTCCEEEEEEEEEECC
T ss_pred HHHHEECCCCCEEEECCC--CEEEEECCCCEEEEE---C-C--EEEECCCCEEEEEEECCCCCEEEEEEEEECCC
T ss_conf 344132344765663267--427997387506775---5-3--78613688079999847996899997686166
No 2
>>1f00_I Intimin; immunoglobulin-like fold, C-type lectin-like fold, cell adhesion; 1.90A {Escherichia coli} (I:96-182)
Probab=66.34 E-value=7.7 Score=19.00 Aligned_cols=59 Identities=15% Similarity=0.161 Sum_probs=38.9
Q ss_pred CEEEEEECCEEE-E---ECCCCC----EEEEECCCCEEEEEEECCCCEEEEEECCCCEEEEEEECCCCCEE
Q ss_conf 279996082899-9---847665----02783284417899817998899996057708999987999889
Q gi|255764483|r 33 NRIRIAVGQSLI-L---QFDVLP----KQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDIL 95 (135)
Q Consensus 33 ~~i~v~vgks~i-l---~l~~p~----~~V~VgnP~IADv~~l~~~~~i~v~GK~~G~Tnliv~d~~g~~i 95 (135)
..+.+.+|+... | -.+..+ -.-..+||+||-+ |...=.++|++.|.+.+.+-..+|...
T Consensus 14 ~~~~l~~g~~~~~l~~~v~p~~a~~~~v~wsSsd~~VatV----d~~~G~Vta~~~G~a~Itat~~~g~~~ 80 (87)
T 1f00_I 14 TGVKGKLPTVWLQYGQVNLKASGGNGKYTWRSANPAIASV----DASSGQVTLKEKGTTTISVISSDNQTA 80 (87)
T ss_dssp TCCEESCCSEEETTCEEECCEESTTSCEEEEESCTTTEEE----CTTTCEEEECSSSCEEEEEEETTTEEE
T ss_pred ECCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCEEEE----CCCCCEEEECCCCEEEEEEEECCCCEE
T ss_conf 0123234540488889954777887435998668866998----478756981577469999995899739
No 3
>>3i1n_D 50S ribosomal protein L3; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_B 1p86_B 1vs8_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vs6_D 2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D* 2qov_D 2qox_D ... (D:1-30,D:102-209)
Probab=62.68 E-value=8.9 Score=18.64 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=27.3
Q ss_pred EEEECCCCEEEEEEECCCCCEEEEEEEEEEECCCCEEEE
Q ss_conf 999605770899998799988998899997279877999
Q gi|255764483|r 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRV 112 (135)
Q Consensus 74 ~v~GK~~G~Tnliv~d~~g~~i~~~~i~V~~~~~~~V~V 112 (135)
-|+||+.|-|. +||++|+.|--.-|.+..+++ .|.|
T Consensus 3 gi~g~k~gmtq--vf~~~g~~ipvtvi~~~~~Gq-~VDV 38 (138)
T 3i1n_D 3 GLVGKKVGMTR--IFTEDGVSIPVTVIEVEADVK-KVDV 38 (138)
T ss_dssp CEEEEECCCEE--EEETTTEEEEEEEEECCSSCS-CCCC
T ss_pred EEEEEECCCCE--EECCCCCEEEEEEEEECECCC-EEEE
T ss_conf 47499548817--888899699879999471797-6999
No 4
>>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} (A:1-95,A:239-270)
Probab=52.70 E-value=15 Score=17.30 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=28.2
Q ss_pred EEEEECCCCEEE--EEEECCCCCEEEEEEEEEEECCCC
Q ss_conf 999960577089--999879998899889999727987
Q gi|255764483|r 73 VVITGKNLGSTN--IIVLGHNNDILLDTEIATFANEQS 108 (135)
Q Consensus 73 i~v~GK~~G~Tn--liv~d~~g~~i~~~~i~V~~~~~~ 108 (135)
-|++|-..|+|+ ..++|++|++|....+......+.
T Consensus 3 ~y~LGIDiGtTsvKavl~D~dG~iia~~~~~t~~~~~~ 40 (127)
T 1hux_A 3 IYTLGIDVGSTASKCIILKDGKEIVAKSLVAVGTGTSG 40 (127)
T ss_dssp CEEEEEEECSSEEEEEEEETTTEEEEEEEEECCSSCCH
T ss_pred EEEEEECCCCCCEEEEEECCCCEEEEEEEECCCCCCCH
T ss_conf 38985314774113799835302322566226998633
No 5
>>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, structural genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* (A:1-85,A:223-246)
Probab=51.10 E-value=17 Score=16.92 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=26.6
Q ss_pred CEEEEEECCCCEEEE--EEECCCCCEEEEEEEEEE
Q ss_conf 889999605770899--998799988998899997
Q gi|255764483|r 71 KTVVITGKNLGSTNI--IVLGHNNDILLDTEIATF 103 (135)
Q Consensus 71 ~~i~v~GK~~G~Tnl--iv~d~~g~~i~~~~i~V~ 103 (135)
+.=|+.|-..|+|++ +++|.+|+++........
T Consensus 4 ~~~yilgIDiGTTsiKa~l~D~~G~~ia~~~~~~~ 38 (109)
T 3g25_A 4 XEKYILSIDQGTTSSRAILFNQKGEIAGVAQREFK 38 (109)
T ss_dssp CCCEEEEEEECSSEEEEEEECTTSCEEEEEEEECC
T ss_pred CCCEEEEEECCCCCCHHHEECCCCCEEEEEEEECC
T ss_conf 03078999840204011068499989999997067
No 6
>>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* (A:1-85,A:223-247)
Probab=46.83 E-value=20 Score=16.52 Aligned_cols=31 Identities=10% Similarity=0.118 Sum_probs=25.8
Q ss_pred EEEEECCCCEEEE--EEECCCCCEEEEEEEEEE
Q ss_conf 9999605770899--998799988998899997
Q gi|255764483|r 73 VVITGKNLGSTNI--IVLGHNNDILLDTEIATF 103 (135)
Q Consensus 73 i~v~GK~~G~Tnl--iv~d~~g~~i~~~~i~V~ 103 (135)
=|+.|-..|+|++ ++||++|+++........
T Consensus 4 ~yvLgIDiGTts~Ra~l~D~~G~iia~~~~~~~ 36 (110)
T 2w40_A 4 NVILSIDQSTQSTKVFFYDEELNIVHSNNLNHE 36 (110)
T ss_dssp EEEEEEEECSSEEEEEEEETTCCEEEEEEEECC
T ss_pred CEEEEEECCHHCCHHHEECCCCCEEEEEEEECC
T ss_conf 599999731111012168399989999997067
No 7
>>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} (A:1-104)
Probab=45.80 E-value=12 Score=17.92 Aligned_cols=52 Identities=13% Similarity=0.087 Sum_probs=37.4
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEEEEEECCCC
Q ss_conf 2844178998179988999960577089999879998899889999727987
Q gi|255764483|r 57 GDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQS 108 (135)
Q Consensus 57 gnP~IADv~~l~~~~~i~v~GK~~G~Tnliv~d~~g~~i~~~~i~V~~~~~~ 108 (135)
.+++.+.+....++..+.-.|+..-.-.+.+.|.+|+++.+..|.....+..
T Consensus 4 ~~~~~~~i~l~~~~~~~~Adg~d~~~i~v~v~D~~Gnpv~~~~V~~~~~~~~ 55 (104)
T 1cwv_A 4 VQQPQLTLTAAVIGDGAPANGKTAITVEFTVADFEGKPLAGQEVVITTNNGA 55 (104)
T ss_dssp -----CEEEEEEESCSEESSSSSCEEEEEEEECTTSCBCCSCEEEEECCTTC
T ss_pred ECCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCC
T ss_conf 6199669999964888567885558999999949989988998999968982
No 8
>>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein; 2.10A {Pseudomonas aeruginosa} (A:139-191)
Probab=45.71 E-value=17 Score=16.93 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=27.4
Q ss_pred CCEEEEEEECCCCEEEEEECCCCEEEEEEECCCC
Q ss_conf 4417899817998899996057708999987999
Q gi|255764483|r 59 DKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNN 92 (135)
Q Consensus 59 P~IADv~~l~~~~~i~v~GK~~G~Tnliv~d~~g 92 (135)
|.++|+..=...+++++.|...|-..++++|-..
T Consensus 2 p~v~d~~~~~~w~tvlvgg~g~GG~~~yALDVTd 35 (53)
T 3hx6_A 2 PVVADAFFGGAWHTVLIGSLRAGGKGLFALDVTD 35 (53)
T ss_dssp CEEEEEEETTEEEEEEEEECTTSCSEEEEEECSS
T ss_pred CEEEEEEECCCCEEEEEEECCCCCCEEEEEECCC
T ss_conf 6798889779635999981388985699994789
No 9
>>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleotide-binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O (X:1-84,X:222-244)
Probab=43.56 E-value=23 Score=16.21 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=25.7
Q ss_pred EEEEECCCCEEE--EEEECCCCCEEEEEEEEEEEC
Q ss_conf 999960577089--999879998899889999727
Q gi|255764483|r 73 VVITGKNLGSTN--IIVLGHNNDILLDTEIATFAN 105 (135)
Q Consensus 73 i~v~GK~~G~Tn--liv~d~~g~~i~~~~i~V~~~ 105 (135)
=|+.|-..|+|+ .+++|++|+++..........
T Consensus 5 ~~iLgIDiGTTs~Ka~lvd~~G~iva~~~~~~~~~ 39 (107)
T 3h3n_X 5 NYVMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQY 39 (107)
T ss_dssp CEEEEEEECSSEEEEEEEETTSCEEEEEEEECCCB
T ss_pred CEEEEEECCCCCHHHHEECCCCCEEEEEEEECCCC
T ss_conf 48999982111202315718999999999836716
No 10
>>3hz6_A Xylulokinase; xylulose, structural genomic, manolate, transferase, structural genomics, PSI-2, protein structure initiative; HET: ADP XUL; 1.65A {Chromobacterium violaceum} (A:1-241)
Probab=35.98 E-value=30 Score=15.50 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=26.0
Q ss_pred EEEEEECCCCEEE--EEEECCCCCEEEEEEEEEEE
Q ss_conf 8999960577089--99987999889988999972
Q gi|255764483|r 72 TVVITGKNLGSTN--IIVLGHNNDILLDTEIATFA 104 (135)
Q Consensus 72 ~i~v~GK~~G~Tn--liv~d~~g~~i~~~~i~V~~ 104 (135)
.-|+.|-..|+|+ .+++|++|+++...+.....
T Consensus 4 ~~~vlgiDiGTts~Ka~l~d~~g~vv~~~~~~~~~ 38 (241)
T 3hz6_A 4 AFYIATFDIGTTEVKAALADRDGGLHFQRSIALET 38 (241)
T ss_dssp CCEEEEEEECSSEEEEEEECTTSCEEEEEEEECCC
T ss_pred CEEEEEEEECCCCEEHEEEECCCCEEEEEEEECCC
T ss_conf 42799998500110120682889999999983572
No 11
>>1tdz_A Formamidopyrimidine-DNA glycosylase; DNA repair, FPG, MUTM, FAPY G, hydrolase/DNA complex; HET: FOX; 1.80A {Lactococcus lactis} (A:137-272)
Probab=35.27 E-value=25 Score=15.98 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=16.7
Q ss_pred CCEEEEEECCCEEEEECCCCCCC
Q ss_conf 87799993892369810588765
Q gi|255764483|r 107 QSTVRVYTPGTLSFLSCTPRCLP 129 (135)
Q Consensus 107 ~~~V~V~rg~~~~t~sC~p~C~p 129 (135)
+..|....-++|.+|-| |.|+|
T Consensus 114 G~~I~~~~~~gR~t~~C-P~CQ~ 135 (136)
T 1tdz_A 114 GAEIQKIKVAGRGTHFC-PVCQQ 135 (136)
T ss_dssp CCBCEEEEETTEEEEEC-TTTSC
T ss_pred CCEEEEEEECCCCEEEC-CCCCC
T ss_conf 99999999899902999-16469
No 12
>>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken structural genomics/proteomics initiative, RSGI; 1.90A {Thermus thermophilus HB8} (A:220-266)
Probab=33.61 E-value=33 Score=15.27 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=18.7
Q ss_pred CCEEEEEECCCEEEEECCCCCCCCCC
Q ss_conf 87799993892369810588765489
Q gi|255764483|r 107 QSTVRVYTPGTLSFLSCTPRCLPSSP 132 (135)
Q Consensus 107 ~~~V~V~rg~~~~t~sC~p~C~p~~~ 132 (135)
++.+.-.+-++|+||-| |.|+|--|
T Consensus 23 g~~I~~~~~~~R~t~~C-p~CQ~~~p 47 (47)
T 1ee8_A 23 GRPVERRVVAGRGTHFC-PTCQGEGP 47 (47)
T ss_dssp CCBCEEEESSSCEEEEC-TTTTTCCC
T ss_pred CCEEEEEEECCCCEEEC-CCCCCCCC
T ss_conf 99768999889844999-99999897
No 13
>>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural genomics, transferase, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum atcc 11170} (A:1-242)
Probab=32.50 E-value=35 Score=15.17 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=26.1
Q ss_pred EEEEEECCCCEEE--EEEECCCCCEEEEEEEEEEEC
Q ss_conf 8999960577089--999879998899889999727
Q gi|255764483|r 72 TVVITGKNLGSTN--IIVLGHNNDILLDTEIATFAN 105 (135)
Q Consensus 72 ~i~v~GK~~G~Tn--liv~d~~g~~i~~~~i~V~~~ 105 (135)
.-|+.|-.+|+|+ .+++|.+|+++..........
T Consensus 6 ~~~~lgIDiGTts~Ka~l~d~~g~~i~~~~~~~~~~ 41 (242)
T 3ifr_A 6 GRQVIGLDIGTTSTIAILVRLPDTVVAVASRPTTLS 41 (242)
T ss_dssp -CEEEEEEECSSEEEEEEEETTTEEEEEEEEECCCB
T ss_pred CCEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCC
T ss_conf 988999977222337679968899999999856701
No 14
>>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} (A:105-202)
Probab=32.07 E-value=14 Score=17.53 Aligned_cols=51 Identities=8% Similarity=-0.008 Sum_probs=37.3
Q ss_pred CCEEEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEEEEEECCCCEEE
Q ss_conf 44178998179988999960577089999879998899889999727987799
Q gi|255764483|r 59 DKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVR 111 (135)
Q Consensus 59 P~IADv~~l~~~~~i~v~GK~~G~Tnliv~d~~g~~i~~~~i~V~~~~~~~V~ 111 (135)
|..... .+ ++..+.--|+..-.-.+.+.|++|+++-+..|.....+.....
T Consensus 2 ~~~~~l-~~-~~~~i~Adg~d~~~vt~~v~D~~Gnpv~~~~V~~~~~g~~~~~ 52 (98)
T 1cwv_A 2 ADKSTL-AA-VPTSIIADGLMASTITLELKDTYGDPQAGANVAFDTTLGNMGV 52 (98)
T ss_dssp GGGCEE-EE-ESSEEETTSSCCEEEEEECBBTTSCBCCSCCEEEEESSSEECC
T ss_pred CCEEEE-EE-CCCCEECCCCCCEEEEEEEECCCCCEECCCEEEEEECCCCEEE
T ss_conf 302367-75-5763121673217999999858898303517887504783025
No 15
>>3gbt_A Gluconate kinase; LBA0354, FGGY kinase family, carbohydrate metabolic process, transferase, structural genomics, PSI-2; 2.40A {Lactobacillus acidophilus ncfm} (A:1-237)
Probab=31.25 E-value=36 Score=15.04 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=25.5
Q ss_pred EEEEECCCCEEE--EEEECCCCCEEEEEEEEEEE
Q ss_conf 999960577089--99987999889988999972
Q gi|255764483|r 73 VVITGKNLGSTN--IIVLGHNNDILLDTEIATFA 104 (135)
Q Consensus 73 i~v~GK~~G~Tn--liv~d~~g~~i~~~~i~V~~ 104 (135)
=|+.|-..|+|+ .+++|++|+++.........
T Consensus 4 ~~~lgID~GTts~ka~l~d~~g~~~~~~~~~~~~ 37 (237)
T 3gbt_A 4 KYIIGXDVGTTATKGVLYDINGKAVASVSKGYPL 37 (237)
T ss_dssp EEEEEEEECSSEEEEEEEETTSCEEEEEEEECCC
T ss_pred CEEEEEECCCCCEEEEEEECCCCEEEEEEEECCC
T ss_conf 7899997511031000683889899999984783
No 16
>>2zqk_A Intimin; protein-protein complex; 2.80A {Escherichia coli} (A:1-94)
Probab=30.51 E-value=38 Score=14.97 Aligned_cols=58 Identities=16% Similarity=0.037 Sum_probs=39.7
Q ss_pred CCEEEEEECCEEEEECCC-CCEEEEECCCCEEEEEEECCCCEEEEEECCCCEEEEEEECCCCCE
Q ss_conf 627999608289998476-650278328441789981799889999605770899998799988
Q gi|255764483|r 32 SNRIRIAVGQSLILQFDV-LPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94 (135)
Q Consensus 32 s~~i~v~vgks~il~l~~-p~~~V~VgnP~IADv~~l~~~~~i~v~GK~~G~Tnliv~d~~g~~ 94 (135)
...+.|.+|+.....-.. .--.-.-.||+||.| ... =.|+|++.|.+.+.+...+|..
T Consensus 28 ~~~~~l~vg~tv~p~~~~~~~v~w~Ssd~~VatV---~~~--G~Vta~~~G~a~Ita~s~dg~~ 86 (94)
T 2zqk_A 28 LPNIWLQYGQFKLKASGGDGTYSWYSENTSIATV---DAS--GKVTLNGKGSVVIKATSGDKQT 86 (94)
T ss_dssp CCSSEETTCEEECCEESTTSCEEEEESCTTTEEE---CTT--SEEEECSSSCEEEEEEETTSCE
T ss_pred CCCEEEECEEEEEEECCCCCEEEEEECCCCEEEE---CCC--CEEEEEEEEEEEEEEEECCCCE
T ss_conf 8837770459999972788339999789998999---999--7899976059999999899998
No 17
>>2bbk_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 1.75A {Paracoccus denitrificans} (H:1-49,H:301-355)
Probab=30.34 E-value=38 Score=14.95 Aligned_cols=34 Identities=6% Similarity=0.160 Sum_probs=23.9
Q ss_pred EECCCCEEEEEECCCCEEEEEEECCCCCEEEEEE
Q ss_conf 8179988999960577089999879998899889
Q gi|255764483|r 66 ALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTE 99 (135)
Q Consensus 66 ~l~~~~~i~v~GK~~G~Tnliv~d~~g~~i~~~~ 99 (135)
.++....=+++|-+.|+..|++||+...-+....
T Consensus 55 ~VSqDdkPlLYalsag~~~L~v~DA~tGK~~~~~ 88 (104)
T 2bbk_H 55 NVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV 88 (104)
T ss_dssp EECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EECCCCCEEEEEEECCCCEEEEEECCCCCEEEEE
T ss_conf 9989999799999789998999999999899999
No 18
>>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} (A:156-364)
Probab=30.23 E-value=31 Score=15.45 Aligned_cols=24 Identities=8% Similarity=-0.088 Sum_probs=16.5
Q ss_pred EEEEEECCCEEEEECCCCCCCCCCC
Q ss_conf 7999938923698105887654898
Q gi|255764483|r 109 TVRVYTPGTLSFLSCTPRCLPSSPP 133 (135)
Q Consensus 109 ~V~V~rg~~~~t~sC~p~C~p~~~~ 133 (135)
.....-+++|.+|-| |.|+|..++
T Consensus 113 ~~c~~c~ggRtt~~C-P~CQ~~~~~ 136 (209)
T 1tdh_A 113 MSSLQDRHGRTIWFQ-GDPGPLAPK 136 (209)
T ss_dssp CEEEECTTSCEEEES-SCCCTTCC-
T ss_pred CCCCCCCCCCEEEEC-CCCCCCCCC
T ss_conf 824537999789868-888667874
No 19
>>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} (A:1-241)
Probab=29.91 E-value=38 Score=14.90 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=23.4
Q ss_pred EEEECCCCEEE--EEEECCCCCEEEEEEEEEEE
Q ss_conf 99960577089--99987999889988999972
Q gi|255764483|r 74 VITGKNLGSTN--IIVLGHNNDILLDTEIATFA 104 (135)
Q Consensus 74 ~v~GK~~G~Tn--liv~d~~g~~i~~~~i~V~~ 104 (135)
|+.|-..|+|+ ..++|.+|++|.........
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~g~~i~~~~~~~~~ 35 (241)
T 2dpn_A 3 FLLALDQGTTSSRAILFTLEGRPVAVAKREFRQ 35 (241)
T ss_dssp CEEEEEECSSEEEEEEECTTSCEEEEEEEECCE
T ss_pred EEEEEECCCCCEEEEEEECCCCEEEEEEEECCE
T ss_conf 899998411131101780889899999974670
No 20
>>3doa_A Fibrinogen binding protein; structural genomics, MCSG., PSI-2, protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp} (A:1-165)
Probab=29.39 E-value=39 Score=14.85 Aligned_cols=56 Identities=16% Similarity=0.290 Sum_probs=34.1
Q ss_pred EEEECCCCCEEEEECC----------------------CCEEEEEEECCCCEEEE-EEC---------------CCCE-E
Q ss_conf 9998476650278328----------------------44178998179988999-960---------------5770-8
Q gi|255764483|r 43 LILQFDVLPKQVIVGD----------------------DKIVDVLALEKEKTVVI-TGK---------------NLGS-T 83 (135)
Q Consensus 43 ~il~l~~p~~~V~Vgn----------------------P~IADv~~l~~~~~i~v-~GK---------------~~G~-T 83 (135)
.++.+..+..++.+.+ -.|.++..+...|-+.+ +++ -.|. .
T Consensus 47 L~i~~~~~~~~i~lt~~~~~~~~~~~~F~~~Lrk~l~g~~i~~i~q~~~DRiv~l~~~~~~~~~~~~~~~Li~El~g~~~ 126 (165)
T 3doa_A 47 LLLSIHPNFSRLQLTTKKYDNPFNPPMFARVFRKHLEGGIIESIKQIGNDRRIEIDIKSKDEIGDTIYRTVILEIMGKHS 126 (165)
T ss_dssp EEEECCTTTCEEEEECC-------CCHHHHHHHHHHTTCEEEEEEESTTSSEEEEEEEEECTTSCEEEEEEEEECCGGGC
T ss_pred EEEEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCC
T ss_conf 99998189878998467877889975699999998665851012876886899999841666787514899999914885
Q ss_pred EEEEECCCCCEEEEE
Q ss_conf 999987999889988
Q gi|255764483|r 84 NIIVLGHNNDILLDT 98 (135)
Q Consensus 84 nliv~d~~g~~i~~~ 98 (135)
|+|+.|++|.+|.-.
T Consensus 127 Niil~D~~~~Ii~al 141 (165)
T 3doa_A 127 NLILVDENRKIIEGF 141 (165)
T ss_dssp EEEEEETTCBEEEES
T ss_pred EEEEECCCCEEEEEE
T ss_conf 099996898799986
No 21
>>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* (A:1-266,A:476-506)
Probab=29.11 E-value=40 Score=14.82 Aligned_cols=30 Identities=10% Similarity=0.117 Sum_probs=24.6
Q ss_pred EEEEECCCCEEEE--EEECCCCCEEEEEEEEE
Q ss_conf 9999605770899--99879998899889999
Q gi|255764483|r 73 VVITGKNLGSTNI--IVLGHNNDILLDTEIAT 102 (135)
Q Consensus 73 i~v~GK~~G~Tnl--iv~d~~g~~i~~~~i~V 102 (135)
=|+.|-.+|+|++ +++|.+|+++.......
T Consensus 5 ~~vlgIDiGTtsvK~~v~d~~g~~v~~~~~~~ 36 (297)
T 3l0q_A 5 SYFIGVDVGTGSARAGVFDLQGRXVGQASREI 36 (297)
T ss_dssp CEEEEEEECSSEEEEEEEETTSCEEEEEEEEC
T ss_pred CEEEEEEECCCCEEEEEECCCCCEEEEEEEEC
T ss_conf 77999980354525558829998999999856
No 22
>>3gf8_A Putative polysaccharide binding proteins (DUF1812); NP_809975.1, structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Bacteroides thetaiotaomicron vpi-5482} (A:)
Probab=27.65 E-value=39 Score=14.88 Aligned_cols=10 Identities=0% Similarity=-0.077 Sum_probs=3.2
Q ss_pred CCCCEEEEEE
Q ss_conf 0577089999
Q gi|255764483|r 78 KNLGSTNIIV 87 (135)
Q Consensus 78 K~~G~Tnliv 87 (135)
|....-++++
T Consensus 147 k~Tn~i~v~l 156 (296)
T 3gf8_A 147 RDTKIVRFGF 156 (296)
T ss_dssp ECCEEEEEEE
T ss_pred ECEEEEEEEE
T ss_conf 5703899999
No 23
>>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} (A:1-244)
Probab=26.46 E-value=44 Score=14.54 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=26.3
Q ss_pred EEEECCCCEEEE--EEECCCCCEEEEEEEEEEEC
Q ss_conf 999605770899--99879998899889999727
Q gi|255764483|r 74 VITGKNLGSTNI--IVLGHNNDILLDTEIATFAN 105 (135)
Q Consensus 74 ~v~GK~~G~Tnl--iv~d~~g~~i~~~~i~V~~~ 105 (135)
|+.|-.+|+|++ .++|.+|+++..........
T Consensus 3 ~~lgID~GTts~ka~l~d~~g~~i~~~~~~~~~~ 36 (244)
T 2d4w_A 3 YVLAIDQGTTSSRAIVFDHSGEIYSTGQLEHDQI 36 (244)
T ss_dssp EEEEEEECSSEEEEEEECTTSCEEEEEEEECCCB
T ss_pred EEEEEEECCCCCHHEEECCCCCEEEEEEECCCCC
T ss_conf 9999971120201207839898999999717803
No 24
>>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} (A:1-74,A:255-284,A:436-494)
Probab=24.56 E-value=48 Score=14.33 Aligned_cols=30 Identities=7% Similarity=0.142 Sum_probs=23.0
Q ss_pred EEEEECCCCEEEE--EEECC-CCCEEEEEEEEE
Q ss_conf 9999605770899--99879-998899889999
Q gi|255764483|r 73 VVITGKNLGSTNI--IVLGH-NNDILLDTEIAT 102 (135)
Q Consensus 73 i~v~GK~~G~Tnl--iv~d~-~g~~i~~~~i~V 102 (135)
=|+.|-..|+||+ .+||. +|+++.....--
T Consensus 5 ~~~lgID~Gtt~~k~~l~d~~~g~ii~~~~~p~ 37 (163)
T 3i8b_A 5 TLVAGVDTSTQSCKVRVTDAETGELVRFGQAKH 37 (163)
T ss_dssp CEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEEECCCCEEEEEEEECC
T ss_conf 579999725503488999899996999996008
No 25
>>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} (A:218-300)
Probab=23.80 E-value=50 Score=14.24 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=28.1
Q ss_pred CEEEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEE
Q ss_conf 4178998179988999960577089999879998899
Q gi|255764483|r 60 KIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILL 96 (135)
Q Consensus 60 ~IADv~~l~~~~~i~v~GK~~G~Tnliv~d~~g~~i~ 96 (135)
+..+.. | +...+|.+--..|+-||.+||.+...|.
T Consensus 47 ~~~~aK-l-d~G~VYft~~~~GsV~Lylwdg~~~~i~ 81 (83)
T 2gop_A 47 GVGQAK-I-KDGKVYFTLFEEGSVNLYIWDGEIKPIA 81 (83)
T ss_dssp EEEEEE-E-ETTEEEEEEEETTEEEEEEESSSEEEEE
T ss_pred CCCCEE-C-CCCEEEEEEECCCEEEEEECCCCEEEEE
T ss_conf 202035-1-5770999995799899999489379997
No 26
>>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} (A:1-122,A:247-267)
Probab=23.34 E-value=51 Score=14.19 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=31.9
Q ss_pred CCCEEEEEECCCCEEEE--EEECCCCCEEEEEEEEEEECCCC
Q ss_conf 99889999605770899--99879998899889999727987
Q gi|255764483|r 69 KEKTVVITGKNLGSTNI--IVLGHNNDILLDTEIATFANEQS 108 (135)
Q Consensus 69 ~~~~i~v~GK~~G~Tnl--iv~d~~g~~i~~~~i~V~~~~~~ 108 (135)
++..-|+.|-..|+|.+ .++|.+|+++....+.......+
T Consensus 8 n~~~~y~iGIdIg~t~i~~~l~D~~G~il~~~~~~~~~~~~~ 49 (143)
T 1woq_A 8 SHKNAPLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTPQPA 49 (143)
T ss_dssp ---CCCEEEEEECSSEEEEEEEETTTTEEEEEEEEEECCSSC
T ss_pred CCCCCCEEEEEECCCEEEEEEEECCCCEEEEEEEEECCCCCC
T ss_conf 389998999997765599999989999899999996789999
No 27
>>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein; HET: CIT; 2.30A {Yersinia pseudotuberculosis} (A:203-301)
Probab=23.19 E-value=7.8 Score=18.99 Aligned_cols=49 Identities=8% Similarity=0.176 Sum_probs=36.3
Q ss_pred CCCEEEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEEEEEECCCC
Q ss_conf 844178998179988999960577089999879998899889999727987
Q gi|255764483|r 58 DDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQS 108 (135)
Q Consensus 58 nP~IADv~~l~~~~~i~v~GK~~G~Tnliv~d~~g~~i~~~~i~V~~~~~~ 108 (135)
||....+ .. ++..+.--|+..-.-.+.+.|.+|++|-+..+......++
T Consensus 2 d~~~~~l-~~-~~~~i~Adg~d~~~i~~~v~D~~Gnpv~~~~v~~~~~~g~ 50 (99)
T 1cwv_A 2 DAGRSSF-TV-STPDILADGTMSSTLSFVPVDKNGHFISGMQGLSFTQNGV 50 (99)
T ss_dssp CTTTCEE-EE-SCSEEETTSCCCEEEEEECBCTTSCBCCSCCSEEEEEEES
T ss_pred CCCCCCC-CC-CCCCEECCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCC
T ss_conf 2110110-03-5661431674206899985145788235624899945996
No 28
>>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, glycerol metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis KOD1} (O:1-238)
Probab=21.22 E-value=56 Score=13.93 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=24.9
Q ss_pred EEEECCCCEEE--EEEECCCCCEEEEEEEEEEE
Q ss_conf 99960577089--99987999889988999972
Q gi|255764483|r 74 VITGKNLGSTN--IIVLGHNNDILLDTEIATFA 104 (135)
Q Consensus 74 ~v~GK~~G~Tn--liv~d~~g~~i~~~~i~V~~ 104 (135)
|+.|-.+|+|+ ..++|++|+++.........
T Consensus 4 ~~lgiD~GTts~ka~l~d~~g~~v~~~~~~~~~ 36 (238)
T 2zf5_O 4 FVLSLDEGTTSARAIIFDRESNIHGIGQYEFPQ 36 (238)
T ss_dssp EEEEEEECSSEEEEEEECTTCCEEEEEEEECCC
T ss_pred EEEEEEECCCCEEEEEEECCCCEEEEEEEECCC
T ss_conf 899998103042323795889999999997772
No 29
>>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A (A:1-231)
Probab=21.17 E-value=56 Score=13.93 Aligned_cols=31 Identities=16% Similarity=0.381 Sum_probs=22.1
Q ss_pred EEEECCCCEEE--EEEECCCCCEEEEEEEEEEE
Q ss_conf 99960577089--99987999889988999972
Q gi|255764483|r 74 VITGKNLGSTN--IIVLGHNNDILLDTEIATFA 104 (135)
Q Consensus 74 ~v~GK~~G~Tn--liv~d~~g~~i~~~~i~V~~ 104 (135)
++.|-..|+|+ .+++|.+|+++.........
T Consensus 1 ~~lgiDiGTts~Ka~l~d~~g~vv~~~~~~~~~ 33 (231)
T 2itm_A 1 MYIGIDLGTSGVKVILLNEQGEVVAAQTEKLTV 33 (231)
T ss_dssp CEEEEEECSSEEEEEEECTTSCEEEEEEEECCC
T ss_pred CEEEEEECCCCEEEEEEECCCCEEEEEEEECCE
T ss_conf 989999622252212780889899999984451
No 30
>>3a46_A Formamidopyrimidine-DNA glycosylase; helix two turns helix, zinc-LESS finger, hydrolase, THF, glycosidase, lyase, multifunctional enzyme; HET: DNA 3DR; 2.20A {Acanthamoeba polyphaga mimivirus} PDB: 3a45_A* 3a42_A (A:144-289)
Probab=21.09 E-value=42 Score=14.67 Aligned_cols=17 Identities=6% Similarity=-0.138 Sum_probs=11.5
Q ss_pred EECCCEEEEECCCCCCCC
Q ss_conf 938923698105887654
Q gi|255764483|r 113 YTPGTLSFLSCTPRCLPS 130 (135)
Q Consensus 113 ~rg~~~~t~sC~p~C~p~ 130 (135)
..-++|.||-| |.|+|.
T Consensus 129 ~~~~gR~t~~C-P~CQ~l 145 (146)
T 3a46_A 129 SGKNKRTTYWA-PAIQKL 145 (146)
T ss_dssp CTTCCCCEEEC-TTTCBC
T ss_pred EECCCEEEEEC-CCCCCC
T ss_conf 78188133999-364756
No 31
>>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuclease-H fold, sugar kinase, glucose, conformational change; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* (A:1-105,A:275-299)
Probab=20.58 E-value=58 Score=13.85 Aligned_cols=29 Identities=14% Similarity=0.323 Sum_probs=22.1
Q ss_pred EEEECCCCEEE--EEEECCCCCEEEEEEEEE
Q ss_conf 99960577089--999879998899889999
Q gi|255764483|r 74 VITGKNLGSTN--IIVLGHNNDILLDTEIAT 102 (135)
Q Consensus 74 ~v~GK~~G~Tn--liv~d~~g~~i~~~~i~V 102 (135)
|+.|-..|+|+ ..++|.+|+++...+..-
T Consensus 3 ~~iGIDiG~T~ira~l~D~~G~ii~~~~~~t 33 (130)
T 2e2o_A 3 IIVGVDAGGTKTKAVAYDCEGNFIGEGSSGP 33 (130)
T ss_dssp CEEEEEECSSCEEEEEECTTSCEEEEEEESC
T ss_pred EEEEEEECHHHEEEEEECCCCCEEEEEEECC
T ss_conf 9999996500279999979998999999578
Done!