BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|255764483|ref|YP_003065151.2| hypothetical protein
CLIBASIA_03125 [Candidatus Liberibacter asiaticus str. psy62]
(135 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|255764483|ref|YP_003065151.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254547834|gb|ACT57211.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 135
Score = 274 bits (700), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MHRKRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDK 60
MHRKRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDK
Sbjct: 1 MHRKRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDK 60
Query: 61 IVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF 120
IVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF
Sbjct: 61 IVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF 120
Query: 121 LSCTPRCLPSSPPVR 135
LSCTPRCLPSSPPVR
Sbjct: 121 LSCTPRCLPSSPPVR 135
>gi|315121901|ref|YP_004062390.1| hypothetical protein CKC_00755 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495303|gb|ADR51902.1| hypothetical protein CKC_00755 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 206
Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/128 (59%), Positives = 96/128 (75%), Gaps = 1/128 (0%)
Query: 4 KRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVD 63
KR+ EI+ + + T + Q T D RIRIA+GQS++L+FD LP +VI+G+D+I D
Sbjct: 77 KRRTEIQKNATKPRTTNTPSPQPTTND-EKRIRIAIGQSIVLKFDSLPSEVIIGNDQITD 135
Query: 64 VLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSC 123
VLALEKEK++VITGK G TNIIVLG N +LL+T+I +F NE TVRVYTP LSFLSC
Sbjct: 136 VLALEKEKSIVITGKKSGLTNIIVLGAGNKVLLETDILSFPNEHDTVRVYTPEKLSFLSC 195
Query: 124 TPRCLPSS 131
TPRCLP+S
Sbjct: 196 TPRCLPNS 203
>gi|114705461|ref|ZP_01438369.1| hypothetical protein FP2506_10991 [Fulvimarina pelagi HTCC2506]
gi|114540246|gb|EAU43366.1| hypothetical protein FP2506_10991 [Fulvimarina pelagi HTCC2506]
Length = 156
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 62/102 (60%), Gaps = 1/102 (0%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
E + I IAV + ILQ D VI+G+ IVD+ L +E+ +V+TGK+ G TN+I+L
Sbjct: 26 EAKKDMIAIAVDHARILQIDRGAGTVIIGNPAIVDIEVLSEER-LVLTGKSYGITNVIIL 84
Query: 89 GHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
+N +L+D ++A E+STVRVY +C P+C P+
Sbjct: 85 DRDNSVLMDEQVAVQTFEESTVRVYRQANRQTYACAPKCEPT 126
>gi|90419761|ref|ZP_01227670.1| possible pilus assembly protein (CpaC) [Aurantimonas manganoxydans
SI85-9A1]
gi|90335802|gb|EAS49550.1| possible pilus assembly protein (CpaC) [Aurantimonas manganoxydans
SI85-9A1]
Length = 157
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
D+ + + + V + I+Q D VIVG+ IVDV L + +V+TG++ G TN+++L
Sbjct: 28 DSRDVLPVEVDHARIVQIDNPAATVIVGNPAIVDVEVLSSNR-LVLTGRSYGITNLVILD 86
Query: 90 HNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
N DI++D ++A + E +TVRVY + +C P+C P+
Sbjct: 87 ANGDIVMDQQVAVQSFEDNTVRVYRQASRVTYACAPKCEPT 127
>gi|218506995|ref|ZP_03504873.1| pilus subunit transmembrane protein [Rhizobium etli Brasil 5]
Length = 151
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 63/110 (57%), Gaps = 8/110 (7%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
GI T A + + +R+ + + +L+ D +VIVG+ K+ D + KT+V+TG
Sbjct: 21 GISTAA-------DDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADA-TVADAKTIVLTG 72
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
++ G+TN+++L + + +LD I +E +TVRVY S LSCTP C
Sbjct: 73 RSFGTTNLVLLDADGNAILDERILVSIDEGNTVRVYRQTERSVLSCTPNC 122
>gi|15963890|ref|NP_384243.1| hypothetical protein SMc04115 [Sinorhizobium meliloti 1021]
gi|307315787|ref|ZP_07595301.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
gi|307320422|ref|ZP_07599839.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|15073065|emb|CAC41524.1| Hypothetical protein SMc04115 [Sinorhizobium meliloti 1021]
gi|306893988|gb|EFN24757.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|306898555|gb|EFN29228.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
Length = 138
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+R+ + + +L+ D +VI+G+ ++ D + KT+V+TG+N G+TN+++L + +
Sbjct: 34 MRVYMDHARVLKLDRPVSKVIIGNAEVADATVADA-KTIVLTGRNFGTTNLVILDQDGNA 92
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
++D I +E +TVRVY + LSCTP C
Sbjct: 93 MVDERILVSIDEGNTVRVYKQTVRTVLSCTPNC 125
>gi|222147187|ref|YP_002548144.1| pilus subunit transmembrane protein [Agrobacterium vitis S4]
gi|221734177|gb|ACM35140.1| pilus subunit transmembrane protein [Agrobacterium vitis S4]
Length = 159
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 19 IPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK 78
+P TA + P +R+ + Q+ IL+ D +VI+G++K+ D + KT+V+TG+
Sbjct: 32 VPGTAHAEDP-----LLRVVMNQARILKLDRPVSKVIIGNEKVADA-TVADPKTIVLTGR 85
Query: 79 NLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
+ G+TN+++L + + D I +E +TVR+Y + LSCTP C
Sbjct: 86 SFGTTNLVLLDSQGNAIFDERILVSIDEANTVRLYKQTQRTVLSCTPSC 134
>gi|327194698|gb|EGE61544.1| pilus subunit transmembrane protein [Rhizobium etli CNPAF512]
Length = 136
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 17 KGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
GI T A + + +R+ + + +L+ D +VIVG+ K+ D + KT+V+T
Sbjct: 20 SGISTAA-------DDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADA-TVADAKTIVLT 71
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
G++ G+TN+++L + + +LD I +E +TVRVY S LSCTP C
Sbjct: 72 GRSFGTTNLVLLDADGNAILDERILVSIDEGNTVRVYRQTERSVLSCTPNC 122
>gi|150398537|ref|YP_001329004.1| hypothetical protein Smed_3348 [Sinorhizobium medicae WSM419]
gi|150030052|gb|ABR62169.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
Length = 140
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+R+ + + +L+ D +VI+G+ + D + KT+V+TG+N G+TN+++L + +
Sbjct: 36 MRVYMDHARVLKLDRPVSKVIIGNSDVADA-TVADAKTIVLTGRNFGTTNLVILDQDGNA 94
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
++D I +E +TVRVY + LSCTP C
Sbjct: 95 MVDERILVSIDEGNTVRVYKQTVRTVLSCTPNC 127
>gi|218461610|ref|ZP_03501701.1| pilus subunit transmembrane protein [Rhizobium etli Kim 5]
Length = 124
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+ + +R+ + + +L+ D +VIVG+ K+ D + KT+V+TG++ G+TN+++L
Sbjct: 15 DDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADA-TVADAKTIVLTGRSFGTTNLVLLDA 73
Query: 91 NNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
+ + +LD I +E +TVRVY S LSCTP C
Sbjct: 74 DGNAILDERILVSIDEGNTVRVYRQTERSVLSCTPNC 110
>gi|190889877|ref|YP_001976419.1| pilus subunit transmembrane protein [Rhizobium etli CIAT 652]
gi|190695156|gb|ACE89241.1| pilus subunit transmembrane protein [Rhizobium etli CIAT 652]
Length = 136
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+ + +R+ + + +L+ D +VIVG+ K+ D + KT+V+TG++ G+TN+++L
Sbjct: 27 DDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADA-TVADAKTIVLTGRSFGTTNLVLLDA 85
Query: 91 NNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
+ + +LD I +E +TVRVY S LSCTP C
Sbjct: 86 DGNAILDERILVSIDEGNTVRVYRQTERSVLSCTPNC 122
>gi|209551755|ref|YP_002283672.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537511|gb|ACI57446.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 136
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+ + +R+ + + +L+ D +VIVG+ K+ D + KT+V+TG++ G+TN+++L
Sbjct: 27 DDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADA-TVADAKTIVLTGRSFGTTNLVLLDA 85
Query: 91 NNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
+ + +LD I +E +TVRVY S LSCTP C
Sbjct: 86 DGNAILDERILVSIDEGNTVRVYRQTERSVLSCTPNC 122
>gi|218671456|ref|ZP_03521126.1| pilus subunit transmembrane protein [Rhizobium etli GR56]
Length = 135
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+ + +R+ + + +L+ D +VIVG+ K+ D + KT+V+TG++ G+TN+++L
Sbjct: 27 DDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADA-TVADAKTIVLTGRSFGTTNLVLLDA 85
Query: 91 NNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
+ + +LD I +E +TVRVY S LSCTP C
Sbjct: 86 DGNAILDERILVSIDEGNTVRVYRQTERSVLSCTPNC 122
>gi|227823967|ref|YP_002827940.1| component of type IV pilus PilQ1 [Sinorhizobium fredii NGR234]
gi|227342969|gb|ACP27187.1| component of type IV pilus PilQ1 [Sinorhizobium fredii NGR234]
Length = 141
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A++KT + +R+ + + +L+ D +VI+G+ + D + KT+V+TG+N G+
Sbjct: 25 AAEKT-DAAEQMMRVYMDHARVLKLDRPVSKVIIGNSDVADA-TVADSKTIVLTGRNFGT 82
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
TN+++L + + ++D I +E +T+RVY T + SC+P C
Sbjct: 83 TNLVILDQDGNAIVDERILVSIDEGNTLRVYKQTTRTVFSCSPNC 127
>gi|222084464|ref|YP_002542993.1| hypothetical protein Arad_0357 [Agrobacterium radiobacter K84]
gi|221721912|gb|ACM25068.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 139
Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 4/122 (3%)
Query: 9 IKNETVRKKGIPTTAS---QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVL 65
I+ T G+ A Q + + +R+ + + +L+ D +VIVG+ ++ D
Sbjct: 3 IRGRTAFLAGVAAMAGLMPQLSRAADDGMLRVYMDHARVLKLDRPVSKVIVGNAQVADA- 61
Query: 66 ALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTP 125
+ KT+V+TG++ G+TNI++L + + ++D I +E +TVRV+ S LSCTP
Sbjct: 62 TVADPKTIVLTGRSFGTTNIVLLDADGNAIVDERILVSIDEGNTVRVFRQTNRSVLSCTP 121
Query: 126 RC 127
C
Sbjct: 122 NC 123
>gi|153008055|ref|YP_001369270.1| hypothetical protein Oant_0719 [Ochrobactrum anthropi ATCC 49188]
gi|151559943|gb|ABS13441.1| conserved hypothetical protein [Ochrobactrum anthropi ATCC 49188]
Length = 139
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
P + I + Q+ IL+ V++G+ I D + ++ +T+V+TGK+ G TNI+V
Sbjct: 29 PASAEDYIALETSQARILRLARPADSVVIGNPSIADAV-VQDAQTIVLTGKDFGVTNIVV 87
Query: 88 LGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSS 131
+ + +LD E+ N + T R+Y + LSCTP C +S
Sbjct: 88 MDKQGEPILDRELVVSRNARGTTRIYRQAEVQTLSCTPYCEKAS 131
>gi|163757621|ref|ZP_02164710.1| putative pilus subunit transmembrane protein [Hoeflea phototrophica
DFL-43]
gi|162285123|gb|EDQ35405.1| putative pilus subunit transmembrane protein [Hoeflea phototrophica
DFL-43]
Length = 136
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+ + IR+ + + IL+ D +VI+G+ + DV + +T+V+TGK+ G+TN+++L
Sbjct: 31 DEDLIRVFMDHARILKLDRTVSKVIIGNAAVADV-TVSDPRTIVLTGKSYGTTNLVILDQ 89
Query: 91 NNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSSP 132
+ ++D I +E +T+RV+ S SC+P C P
Sbjct: 90 EGEAIVDERILVSVDEANTLRVFKQTARSVYSCSPSCEEHKP 131
>gi|239833241|ref|ZP_04681570.1| Hypothetical protein OINT_1002558 [Ochrobactrum intermedium LMG
3301]
gi|239825508|gb|EEQ97076.1| Hypothetical protein OINT_1002558 [Ochrobactrum intermedium LMG
3301]
Length = 139
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
+Q + ED I + Q+ IL+ V++G+ I D + ++ +T+V+TGK+ G T
Sbjct: 28 AQASAEDY---IALETSQARILRLARPADSVVIGNPSIADAV-VQDAQTIVLTGKDFGVT 83
Query: 84 NIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSS 131
NI+V+ + +LD E+ N + T R+Y + LSCTP C +S
Sbjct: 84 NIVVMDKQGEPILDRELVVSRNTRGTTRIYRQAEVQTLSCTPYCEKAS 131
>gi|86355860|ref|YP_467752.1| hypothetical protein RHE_CH00201 [Rhizobium etli CFN 42]
gi|86279962|gb|ABC89025.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 102
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 44 ILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATF 103
+L+ D +VIVG+ ++ D + KT+V+TG++ G+TN+++L + + +LD I
Sbjct: 6 VLKLDRPVSKVIVGNAQVADA-TVADAKTIVLTGRSFGTTNLVLLDADGNAILDERILVS 64
Query: 104 ANEQSTVRVYTPGTLSFLSCTPRC 127
+E +TVRVY S LSCTP C
Sbjct: 65 IDEGNTVRVYRQTERSVLSCTPNC 88
>gi|307943136|ref|ZP_07658481.1| PilQ [Roseibium sp. TrichSKD4]
gi|307773932|gb|EFO33148.1| PilQ [Roseibium sp. TrichSKD4]
Length = 161
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 54 VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVY 113
VIVG+ I DV A+ TVVITGK+ GSTN+++L NN+ ++D I A+++ TV V+
Sbjct: 50 VIVGNPFIADV-AMHDASTVVITGKSYGSTNLVILDDNNEPIIDEVITVKASDEGTVFVH 108
Query: 114 TPGTLSFLSCTPRCLPS 130
SC P C P+
Sbjct: 109 RNTARQSYSCAPECEPT 125
>gi|325291663|ref|YP_004277527.1| hypothetical protein AGROH133_03290 [Agrobacterium sp. H13-3]
gi|325059516|gb|ADY63207.1| hypothetical protein AGROH133_03290 [Agrobacterium sp. H13-3]
Length = 136
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+R+++ + +L+ D +VIVG+ K+ D + T+V+TG++ G+TN+++L +
Sbjct: 31 LRVSMNHARVLRLDRPVSKVIVGNSKVADA-TVADATTIVLTGRSFGTTNLVLLDAEGNP 89
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
++D I +E +TVRV+ + LSCTP C
Sbjct: 90 IVDERILVSIDEGNTVRVFRQTERTVLSCTPNC 122
>gi|159184220|ref|NP_353258.2| hypothetical protein Atu0226 [Agrobacterium tumefaciens str. C58]
gi|159139548|gb|AAK86043.2| PilQ [Agrobacterium tumefaciens str. C58]
Length = 127
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+R+++ + +L+ D +VIVG+ K+ D + T+V+TG++ G+TN+++L +
Sbjct: 22 LRVSMNHARVLRLDRPVSKVIVGNSKVADA-TVADATTIVLTGRSFGTTNLVLLDAEGNP 80
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
++D I +E +TVRV+ + LSCTP C
Sbjct: 81 IVDERILVSIDEGNTVRVFRQTERTVLSCTPNC 113
>gi|13474655|ref|NP_106224.1| hypothetical protein mll5591 [Mesorhizobium loti MAFF303099]
gi|14025410|dbj|BAB52010.1| mll5591 [Mesorhizobium loti MAFF303099]
Length = 129
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
TP + I + + Q+ I++ ++VG+ I D +++ T+V+TGK G TN++
Sbjct: 10 TPARAAADIEVTMNQAKIVKLSRPADTIVVGNPAIADA-SVQDASTIVLTGKGFGVTNLV 68
Query: 87 VLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
VL ++D ++ S+VR+Y + +SCTP C
Sbjct: 69 VLDQEGSPIVDAQVTVVRQAASSVRIYRRAEVQTMSCTPYC 109
>gi|116249977|ref|YP_765815.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
viciae 3841]
gi|115254625|emb|CAK05699.1| putative pilus subunit transmembrane protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 136
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+ + +R+ + + +L+ D +VIVG+ + + KT+V+TG++ G+TN+++L
Sbjct: 27 DDDMLRVYMDHARVLKLDRPVSKVIVGNAAVA-DATVADAKTIVLTGRSFGTTNLVLLDA 85
Query: 91 NNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
+ + +LD I +E +TVRVY S LSCTP C
Sbjct: 86 DGNAILDERILVSIDEGNTVRVYRQTQRSVLSCTPNC 122
>gi|241207153|ref|YP_002978249.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240861043|gb|ACS58710.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 136
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+ + +R+ + + +L+ D +VIVG+ + + KT+V+TG++ G+TN+++L
Sbjct: 27 DDDMLRVYMDHARVLKLDRPVSKVIVGNAAVA-DATVADAKTIVLTGRSFGTTNLVLLDA 85
Query: 91 NNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
+ + +LD I +E +TVRVY S LSCTP C
Sbjct: 86 DGNAILDERILVSIDEGNTVRVYRQTQRSVLSCTPNC 122
>gi|260461953|ref|ZP_05810198.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
gi|259032200|gb|EEW33466.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
Length = 141
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
P I + + Q+ I++ ++VG+ I D +++ T+V+TGK G TN++V
Sbjct: 22 PARAGTGIEVTMNQAKIVKLSRPADTIVVGNPSIADA-SVQDASTIVLTGKGFGVTNLVV 80
Query: 88 LGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
L ++D ++ S+VR+Y + +SCTP C
Sbjct: 81 LDQEGSPIVDAQVTVVRQAASSVRIYRRAEVQTMSCTPYC 120
>gi|118589699|ref|ZP_01547104.1| hypothetical protein SIAM614_04645 [Stappia aggregata IAM 12614]
gi|118437785|gb|EAV44421.1| hypothetical protein SIAM614_04645 [Stappia aggregata IAM 12614]
Length = 154
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + V ++ + + + VIVG+ I DV A+ + TVVITGK+ G+TN+++L +N
Sbjct: 28 VLVTVDRAKVFRIEDGAAAVIVGNPFIADV-AMFDQNTVVITGKSYGTTNLVILDGDNKP 86
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLP 129
++D I A++ V VY + LSC P C P
Sbjct: 87 IVDETITVKASDDDVVSVYRKVSRESLSCNPACEP 121
>gi|319785612|ref|YP_004145088.1| hypothetical protein Mesci_6031 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317171500|gb|ADV15038.1| hypothetical protein Mesci_6031 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 140
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
I + + Q+ I++ ++VG+ I D +++ T+V+TGK G TN++VL +
Sbjct: 29 IEVTMNQAKIVKLSRPADTIVVGNPAIADA-SVQDASTIVLTGKGFGVTNLVVLDTDGSP 87
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
++D ++ S+VR+Y + +SCTP C
Sbjct: 88 IVDEQVTVVRQAASSVRIYRRAEIQTMSCTPYC 120
>gi|254561617|ref|YP_003068712.1| hypothetical protein METDI3204 [Methylobacterium extorquens DM4]
gi|254268895|emb|CAX24856.1| conserved hypothetical protein; putative exported protein precursor
[Methylobacterium extorquens DM4]
Length = 160
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 54 VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVY 113
V+VG+ I D+ L+K VV+TGK+ G+TN+I L +L ++ I+ A + S + V
Sbjct: 57 VVVGNPMIADI-TLQKNGVVVLTGKSFGTTNLIALDGKGAMLAESTISVQAPQASIITVQ 115
Query: 114 TPGTLSFLSCTPRCLPS 130
SCTP C PS
Sbjct: 116 RGLDRESYSCTPNCQPS 132
>gi|163851899|ref|YP_001639942.1| hypothetical protein Mext_2476 [Methylobacterium extorquens PA1]
gi|240139022|ref|YP_002963497.1| hypothetical protein MexAM1_META1p2441 [Methylobacterium extorquens
AM1]
gi|163663504|gb|ABY30871.1| conserved hypothetical protein [Methylobacterium extorquens PA1]
gi|240008994|gb|ACS40220.1| conserved hypothetical protein; putative exported protein precursor
[Methylobacterium extorquens AM1]
Length = 160
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 54 VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVY 113
V+VG+ I D+ L+K VV+TGK+ G+TN+I L +L ++ I+ A + S + V
Sbjct: 57 VVVGNPMIADI-TLQKNGVVVLTGKSFGTTNLIALDGKGAMLAESTISVQAPQASIITVQ 115
Query: 114 TPGTLSFLSCTPRCLPS 130
SCTP C PS
Sbjct: 116 RGLDRESYSCTPNCQPS 132
>gi|218530650|ref|YP_002421466.1| hypothetical protein Mchl_2699 [Methylobacterium chloromethanicum
CM4]
gi|218522953|gb|ACK83538.1| conserved hypothetical protein [Methylobacterium chloromethanicum
CM4]
Length = 159
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 54 VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVY 113
V+VG+ I D+ L+K VV+TGK+ G+TN+I L +L ++ I+ A + S + V
Sbjct: 56 VVVGNPMIADI-TLQKNGVVVLTGKSFGTTNLIALDGKGAMLAESTISVQAPQASIITVQ 114
Query: 114 TPGTLSFLSCTPRCLPS 130
SCTP C PS
Sbjct: 115 RGLDRESYSCTPNCQPS 131
>gi|188581656|ref|YP_001925101.1| hypothetical protein Mpop_2404 [Methylobacterium populi BJ001]
gi|179345154|gb|ACB80566.1| conserved hypothetical protein [Methylobacterium populi BJ001]
Length = 160
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 54 VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVY 113
V+VG+ I D+ L+K VV+TGK+ G+TN+I L +L ++ I+ A + S + V
Sbjct: 57 VVVGNPMIADI-TLQKNGVVVLTGKSFGTTNLIALDGRGAMLAESTISVQAAQASIITVQ 115
Query: 114 TPGTLSFLSCTPRCLPS 130
SCTP C P+
Sbjct: 116 RGLDRESYSCTPNCQPA 132
>gi|304392391|ref|ZP_07374332.1| PilQ [Ahrensia sp. R2A130]
gi|303295495|gb|EFL89854.1| PilQ [Ahrensia sp. R2A130]
Length = 171
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 54 VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVY 113
VIVG+ IVD ++ +T+V+TG+ G TNIIVL + D ++D + E + V VY
Sbjct: 66 VIVGNPSIVDA-TIQDARTLVLTGRLFGVTNIIVLDSDGDPIVDETVVVKGEETNLVHVY 124
Query: 114 TPGTLSFLSCTPRC 127
L+C P C
Sbjct: 125 RQANRETLACAPVC 138
>gi|170749896|ref|YP_001756156.1| hypothetical protein Mrad2831_3496 [Methylobacterium radiotolerans
JCM 2831]
gi|170656418|gb|ACB25473.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM
2831]
Length = 164
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 54 VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVY 113
VIVG+ I +V +K +V+TGK+ GSTN+I L + ++ +T I A+ ST+ V
Sbjct: 52 VIVGNPIIAEVTP-QKNGVLVLTGKSFGSTNLIALDNGGAMIAETTIRVEASRDSTITVQ 110
Query: 114 TPGTLSFLSCTPRCLPS 130
LSCTP C PS
Sbjct: 111 RGLDRESLSCTPGCQPS 127
>gi|154250684|ref|YP_001411508.1| hypothetical protein Plav_0228 [Parvibaculum lavamentivorans DS-1]
gi|154154634|gb|ABS61851.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1]
Length = 172
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
G+ +ASQ ++ + +S L V+VG+ I DV +E K + + G
Sbjct: 25 GLAVSASQAAD------FQVEMNKSKALHLGQPASTVMVGNPSIADV-TVEGSKLLYVMG 77
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
++ G TNII L + + +LD + + STV + G +CTPRC
Sbjct: 78 RSYGRTNIIALDSSGETILDINVNVVSQSASTVTLTRGGGQYTYNCTPRC 127
>gi|110636420|ref|YP_676628.1| hypothetical protein Meso_4096 [Mesorhizobium sp. BNC1]
gi|110287404|gb|ABG65463.1| conserved hypothetical protein [Chelativorans sp. BNC1]
Length = 137
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
I I + Q+ I++ V++G+ +I D + ++ +T+V+TGK G TNI+ L
Sbjct: 28 IGIVMNQAKIIKLVRPADTVVIGNPEIADAV-VQDAQTIVLTGKGFGVTNIVALDVEGRP 86
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
++D ++ +VR+Y + LSCTP C
Sbjct: 87 IMDEQVRVSRQTVDSVRIYRRSDVQTLSCTPFC 119
>gi|220922775|ref|YP_002498077.1| hypothetical protein Mnod_2823 [Methylobacterium nodulans ORS 2060]
gi|219947382|gb|ACL57774.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
Length = 161
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 54 VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVY 113
V+VG+ I DV L++ V++TGK+ GSTN+I L +L ++ I+ A S V V
Sbjct: 59 VVVGNPIIADV-TLQRNGIVILTGKSFGSTNLIALDAAGTMLAESFISVQAATSSVVTVQ 117
Query: 114 TPGTLSFLSCTPRCLPS 130
SCTP C PS
Sbjct: 118 RGLERESYSCTPACQPS 134
>gi|300021849|ref|YP_003754460.1| hypothetical protein Hden_0314 [Hyphomicrobium denitrificans ATCC
51888]
gi|299523670|gb|ADJ22139.1| conserved hypothetical protein [Hyphomicrobium denitrificans ATCC
51888]
Length = 170
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 41 QSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEI 100
QS +L +VIVG+ I DV L+ +V+TGK G TN+I L ++++ D +
Sbjct: 44 QSQLLHLPRPASEVIVGNPSIADV-TLQDGNLLVVTGKTFGITNVIALDAAHNVIQDQRV 102
Query: 101 ATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
++ TV ++ T +CTP C P+
Sbjct: 103 MVERDDTRTVNLHKGSTRFTYACTPNCEPT 132
>gi|295690803|ref|YP_003594496.1| CpaC-related secretion pathway protein [Caulobacter segnis ATCC
21756]
gi|295432706|gb|ADG11878.1| CpaC-related secretion pathway protein [Caulobacter segnis ATCC
21756]
Length = 132
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 37 IAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILL 96
+A GQ++ L + V+VGD ++ DV ++ E+T+V+ GK G TN++V G L
Sbjct: 30 LATGQAISLSLGGAMRDVVVGDPEVADV-SIVNERTLVVLGKRPGVTNLLVFGAGGRALT 88
Query: 97 DTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
D ++ + V VY T S +C C
Sbjct: 89 DRQLIVSEAGGAAVTVYRGVTTSNYACPREC 119
>gi|254418061|ref|ZP_05031785.1| hypothetical protein BBAL3_371 [Brevundimonas sp. BAL3]
gi|196184238|gb|EDX79214.1| hypothetical protein BBAL3_371 [Brevundimonas sp. BAL3]
Length = 138
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
S + + + +S +Q + VIVG+ +I DV ++ T+ I GK G T ++ +
Sbjct: 27 SGALNVEIDRSARVQLNGAASSVIVGNPQIADVTVVDA-NTLFIVGKGYGVTEVVAVDGV 85
Query: 92 NDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
L EI +VRV+ G + ++C+ C PS
Sbjct: 86 GRTLFQREIVVTGGSTGSVRVWRGGQATEMACSASCAPS 124
>gi|170740625|ref|YP_001769280.1| hypothetical protein M446_2388 [Methylobacterium sp. 4-46]
gi|168194899|gb|ACA16846.1| conserved hypothetical protein [Methylobacterium sp. 4-46]
Length = 158
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 54 VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVY 113
V+VG+ I DV +L++ V++TGK+ G+TN+I L + +L ++ I+ A S V V
Sbjct: 56 VVVGNPIIADV-SLQRNGLVILTGKSFGTTNLIALDGSGAMLAESFISVQAATTSVVTVQ 114
Query: 114 TPGTLSFLSCTPRCLPS 130
SCTP C P+
Sbjct: 115 RGLERESYSCTPACQPA 131
>gi|90425192|ref|YP_533562.1| hypothetical protein RPC_3708 [Rhodopseudomonas palustris BisB18]
gi|90107206|gb|ABD89243.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
Length = 165
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
E + I + V Q+ +++F ++VG+ I DV L+ +V+TGK G+TN+I +
Sbjct: 32 ETANGIIAVNVDQAKLVRFPARIATIVVGNPLIADV-TLQPGGIIVVTGKGYGATNVIAM 90
Query: 89 GHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
++LLD I V +Y SCTP C
Sbjct: 91 DRAGEVLLDRVIQVEGPTDQVVTIYRGVDRESYSCTPLC 129
>gi|221235980|ref|YP_002518417.1| CpaC-like secretion pathway protein [Caulobacter crescentus NA1000]
gi|220965153|gb|ACL96509.1| CpaC-related secretion pathway protein [Caulobacter crescentus
NA1000]
Length = 143
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 37 IAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILL 96
++ GQ+ + + ++VGD I DV ++ ++T+V+ GK G T+++ G N L
Sbjct: 44 VSAGQASYVSLAGSVRDIVVGDPSIADV-SVVNDRTLVVLGKRPGVTSLLAFGANGRPLA 102
Query: 97 DTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
D ++ N V VY T S +C +C
Sbjct: 103 DRQVVVSENGGGGVIVYRGATASNYACAAQC 133
>gi|144897438|emb|CAM74302.1| conserved hypothetical protein, secreted [Magnetospirillum
gryphiswaldense MSR-1]
Length = 138
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
++ + + GQS + QV++GD K+ DV +++ + + GK GST++ VLG N
Sbjct: 21 ADTLELGAGQSRRVDAGRGVAQVVIGDPKVADV-SVDSAGRIQLFGKRAGSTSLTVLGRN 79
Query: 92 NDILLDTEIATFANEQSTVRV-------YTPGTLSFL-SCTPRC 127
+LLD + A + TV V PG L+ + +C C
Sbjct: 80 GAVLLDHTVVVRAGGEGTVTVTYGAGKDVKPGGLTVIHACGQGC 123
>gi|328545283|ref|YP_004305392.1| Possible pilus assembly protein (CpaC) [polymorphum gilvum
SL003B-26A1]
gi|326415025|gb|ADZ72088.1| Possible pilus assembly protein (CpaC) [Polymorphum gilvum
SL003B-26A1]
Length = 157
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + V ++ + + + VIVG+ I DV + TVV+TGK G+TN+++L ++
Sbjct: 31 VAVTVDRAKVFRIEAPADTVIVGNPSIADV-TMHDRFTVVVTGKTFGTTNLVILDKDSQP 89
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
++D I E V V SC+P C P+
Sbjct: 90 IIDEVIVVRPPETDVVTVTRNLNRYSYSCSPTCEPT 125
>gi|27376555|ref|NP_768084.1| hypothetical protein blr1444 [Bradyrhizobium japonicum USDA 110]
gi|27349696|dbj|BAC46709.1| blr1444 [Bradyrhizobium japonicum USDA 110]
Length = 165
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
E ++ I + V Q+ +++ ++VG+ I DV L+ +V+TGK G+TN I
Sbjct: 29 AESTADTIAVNVDQAKLVRLPGKVATIVVGNPLIADV-TLQPGGMIVVTGKGYGATNFIA 87
Query: 88 LGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
L +IL+D +I V VY SC P C
Sbjct: 88 LDRGGEILVDRQIQVEGPSDRLVTVYRGVERESYSCMPIC 127
>gi|114798749|ref|YP_761695.1| hypothetical protein HNE_3018 [Hyphomonas neptunium ATCC 15444]
gi|114738923|gb|ABI77048.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444]
Length = 147
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 54 VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVY 113
++VG+ I DV A+ ++ + +TGK+ G+TN++V + + E+ AN S V V
Sbjct: 45 IVVGNKNIADV-AVHDDRLIFVTGKSYGTTNLMVFNKAGEEVYSAEVVVTANSSSLVTVN 103
Query: 114 TPGTLSFLSCTPRC 127
G C P C
Sbjct: 104 RAGQNQTYDCAPVC 117
>gi|92116017|ref|YP_575746.1| hypothetical protein Nham_0395 [Nitrobacter hamburgensis X14]
gi|91798911|gb|ABE61286.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
Length = 161
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
PT A E S+ I + V Q+ +++ ++VG+ I DV L+ VV+TGK
Sbjct: 27 PTAA---LAEVTSDPISVNVDQAKLVKLPGHIATIVVGNPLIADV-TLQPGGLVVVTGKG 82
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
G+TN+I + IL+D I V VY SC P C
Sbjct: 83 YGATNVIAMDRAGSILVDRVIQVEGPSDQVVTVYRGVERESYSCMPVC 130
>gi|315121891|ref|YP_004062380.1| putative pilus assembly protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495293|gb|ADR51892.1| putative pilus assembly protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 471
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
S +I I +G+ +IL + V+V D DV+ + KTV I GK++G N+I++GH+
Sbjct: 47 SKKINIGLGKVVILHLPSRVQDVLVSDPTKADVV-VHSSKTVYIFGKSVGQANVILIGHD 105
Query: 92 NDILLDTEIAT---FANEQSTVRVYTPGT 117
LL+ +I N + T R + G+
Sbjct: 106 EKQLLNIDIFIERDIRNLEMTFRRFLSGS 134
>gi|329847248|ref|ZP_08262276.1| outer membrane channel protein [Asticcacaulis biprosthecum C19]
gi|328842311|gb|EGF91880.1| outer membrane channel protein [Asticcacaulis biprosthecum C19]
Length = 158
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 54 VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVY 113
V+VG+ I DV ++ +T+ I GK GS+ + V G + L D E+ A ++ + VY
Sbjct: 47 VVVGNPDIADVTVVD-SRTLYIVGKGFGSSAVNVAGRDGRSLFDGEVTVTAPKRGAITVY 105
Query: 114 TPGTLSFLSCTPRCLPSSP 132
S + CT C+ P
Sbjct: 106 KGLKPSLMVCTNVCISEEP 124
>gi|85713500|ref|ZP_01044490.1| hypothetical protein NB311A_03149 [Nitrobacter sp. Nb-311A]
gi|85699404|gb|EAQ37271.1| hypothetical protein NB311A_03149 [Nitrobacter sp. Nb-311A]
Length = 163
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
E S I + V Q+ +++ ++VG+ I DV L+ VV+TGK G+TN+I +
Sbjct: 33 EVTSEPISVNVDQAKLVRLPGHIATIVVGNPLIADV-TLQPGGLVVVTGKGYGATNVIAM 91
Query: 89 GHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
IL+D I V VY SC P C
Sbjct: 92 DRAGSILVDRVIQVEGPSDQVVTVYRGLERESYSCMPIC 130
>gi|148258230|ref|YP_001242815.1| hypothetical protein BBta_7025 [Bradyrhizobium sp. BTAi1]
gi|146410403|gb|ABQ38909.1| hypothetical protein BBta_7025 [Bradyrhizobium sp. BTAi1]
Length = 145
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 50 LPKQV---IVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANE 106
LP +V +VG+ I DV L+ +V+TGK+ G+TN I + +L+D +I
Sbjct: 28 LPDRVATLVVGNPMIADV-TLQSGGIIVVTGKSYGATNFIAMDRGGQVLVDRQIQVAGPT 86
Query: 107 QSTVRVYTPGTLSFLSCTPRC 127
V VY SC P C
Sbjct: 87 DRLVTVYRGVDRETYSCMPVC 107
>gi|86748911|ref|YP_485407.1| hypothetical protein RPB_1788 [Rhodopseudomonas palustris HaA2]
gi|86571939|gb|ABD06496.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
Length = 164
Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
I ++V Q+ +++ ++VG+ I DV A++ VV+TGK G+TN+I + +
Sbjct: 36 ISVSVDQAKLIRLPQNISTLVVGNPLIADV-AMQPGGMVVVTGKGYGATNVIAMDRKGAV 94
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
+ D I V VY SCTP C
Sbjct: 95 IADRLIQVEGPMDKVVTVYRGVDRESYSCTPLC 127
>gi|146338128|ref|YP_001203176.1| hypothetical protein BRADO1025 [Bradyrhizobium sp. ORS278]
gi|146190934|emb|CAL74939.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
Length = 145
Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 50 LPKQV---IVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANE 106
LP +V +VG+ I DV L+ +V+TGK+ G+TN I + +L+D +I
Sbjct: 28 LPDRVATLVVGNPMIADV-TLQSGGIIVVTGKSYGATNFIAMDRGGQVLIDRQIQVAGPT 86
Query: 107 QSTVRVYTPGTLSFLSCTPRC 127
V VY SC P C
Sbjct: 87 DRLVTVYRGVDRETYSCMPIC 107
>gi|323137421|ref|ZP_08072499.1| hypothetical protein Met49242DRAFT_1887 [Methylocystis sp. ATCC
49242]
gi|322397408|gb|EFX99931.1| hypothetical protein Met49242DRAFT_1887 [Methylocystis sp. ATCC
49242]
Length = 180
Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
IR+ + + I++ + +++G+ + DV L + +VITGK+ G+TN+IVL
Sbjct: 57 IRVELDYARIVRIPPGAQTLVIGNPLVADVTMLRNSQLMVITGKSFGTTNLIVLDRTGAQ 116
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
+ ++ I T A + + V SC PRC
Sbjct: 117 VGES-IVTVAPAEDKLVVQRGMHRESYSCNPRC 148
>gi|254780727|ref|YP_003065140.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040404|gb|ACT57200.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 474
Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH--- 90
+I I + + +ILQ V + V+V D DV+ + +T+ + GKN+G N+I++GH
Sbjct: 49 KISIGLNKVIILQVPVDVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDGK 107
Query: 91 ---NNDILLDTEIA 101
N DIL++ +IA
Sbjct: 108 QMLNLDILIERDIA 121
>gi|91977981|ref|YP_570640.1| hypothetical protein RPD_3516 [Rhodopseudomonas palustris BisB5]
gi|91684437|gb|ABE40739.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
Length = 161
Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
G+ ++A+ ED + + V Q+ +++ ++VG+ I DV L+ VV+TG
Sbjct: 21 GLMSSAAMAAGEDT---VSVNVDQAKLIRLPQNISTLVVGNPLIADV-TLQPGGMVVVTG 76
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
K G+TN+I + ++ D I + V VY SC P C
Sbjct: 77 KGYGATNVIAMDRKGAVIADRLIQVEGPMDNVVTVYRGVERESYSCMPVC 126
>gi|75674503|ref|YP_316924.1| hypothetical protein Nwi_0305 [Nitrobacter winogradskyi Nb-255]
gi|74419373|gb|ABA03572.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
Length = 163
Score = 40.8 bits (94), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 54 VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVY 113
++VG+ I DV L+ VV+TGK G+TN+I + I++D I V VY
Sbjct: 58 IVVGNPLIADV-TLQPGGLVVVTGKGYGATNMIAMDRAGSIMVDRVIQVEGPSDQVVTVY 116
Query: 114 TPGTLSFLSCTPRC 127
SC P C
Sbjct: 117 RGLERESYSCMPIC 130
>gi|10956078|ref|NP_052165.1| exporter protein [Chlorobium limicola]
gi|1688247|gb|AAB36938.1| exporter protein [Chlorobium limicola]
Length = 461
Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
D + R+ +G+S I +F K+V VGD ++ D + + + + + + GK LGSTN++V
Sbjct: 2 DTPSIYRVPLGESRIYRFAQPIKRVAVGDPQVADYIMMNRSE-IYLLGKKLGSTNLVVWD 60
Query: 90 HNNDI 94
++
Sbjct: 61 QKGNV 65
>gi|110632963|ref|YP_673171.1| hypothetical protein Meso_0606 [Mesorhizobium sp. BNC1]
gi|110283947|gb|ABG62006.1| conserved hypothetical protein [Chelativorans sp. BNC1]
Length = 167
Score = 40.4 bits (93), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
Q + + +R+ + + +L D +IVG+ I +L ++T+++TG+ G+TN
Sbjct: 32 QTVAYERAGAVRLTIDFAELLVLDEPASTIIVGNSAIA-AASLTDDRTLILTGRTAGATN 90
Query: 85 IIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLP 129
+IVL + + + + A + V+ + +C RC P
Sbjct: 91 LIVLDAEGEEIANLVLEVVAAGNHLITVHQGQSRRTFACARRCEP 135
>gi|167648156|ref|YP_001685819.1| hypothetical protein Caul_4197 [Caulobacter sp. K31]
gi|167350586|gb|ABZ73321.1| conserved hypothetical protein [Caulobacter sp. K31]
Length = 131
Score = 40.4 bits (93), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A+ + ++ + ++ GQ+ + + V+VG+ + DV +L E+T+VI GK G+
Sbjct: 16 ATAAGAQSLASPLSVSAGQAARISLSAPVRDVVVGNPAVADV-SLINERTLVILGKKAGA 74
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSSPPV 134
T ++ L D ++ TV V S +C RC + PV
Sbjct: 75 TTVMAFDARGHALADRQVVVSDIPDGTVVVQRGVVASTYACGDRCSQLAAPV 126
>gi|307944371|ref|ZP_07659712.1| putative type III secretion component [Roseibium sp. TrichSKD4]
gi|307772717|gb|EFO31937.1| putative type III secretion component [Roseibium sp. TrichSKD4]
Length = 411
Score = 40.4 bits (93), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
I + G ++L+F+ V +G ++I +V A+ EK + ++G G+TN++V+ ++NDI
Sbjct: 23 INLTKGFGILLRFNEPVASVFIGSNEIAEVQAV-NEKAIYVSGLTAGTTNLLVMNYDNDI 81
Query: 95 L 95
+
Sbjct: 82 I 82
>gi|254473697|ref|ZP_05087092.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
gi|211957083|gb|EEA92288.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
Length = 173
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + Q+ + + + + +I+G+ I DV ++ T+VITGK+ G+TN++VL ++
Sbjct: 45 VEVVADQAKVFRLEEPAETIILGNPSIADVTVHDR-LTIVITGKSYGTTNLVVLNDASEP 103
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
+++ I A V + + SC P C
Sbjct: 104 VVEELITVTAEMAGYVAIQRNNSRFTYSCNPDC 136
>gi|316933043|ref|YP_004108025.1| hypothetical protein Rpdx1_1675 [Rhodopseudomonas palustris DX-1]
gi|315600757|gb|ADU43292.1| hypothetical protein Rpdx1_1675 [Rhodopseudomonas palustris DX-1]
Length = 162
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 33 NRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNN 92
+ I + V Q+ +++ ++VG+ I DV L+ VV+TGK G+TN+I +
Sbjct: 33 DSISVNVDQAKLIRLPQDIATIVVGNPLIADV-TLQPGGMVVVTGKGYGATNVIAMDRKG 91
Query: 93 DILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
I+ D I V VY SC P C
Sbjct: 92 AIVADRLIQVEGPSDKVVTVYRGIDRESYSCAPIC 126
>gi|83859353|ref|ZP_00952874.1| hypothetical protein OA2633_13150 [Oceanicaulis alexandrii
HTCC2633]
gi|83852800|gb|EAP90653.1| hypothetical protein OA2633_13150 [Oceanicaulis alexandrii
HTCC2633]
Length = 146
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 54 VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVY 113
VIVG+ I D + L +T+ +TGK G TN+IVL +L +++ + TV+V+
Sbjct: 43 VIVGNPGIADAM-LYDSRTLFVTGKVFGRTNLIVLDEAGRVLYTSDLVVTQPDSQTVQVF 101
Query: 114 ----TPGTLSFLSCTPRC 127
P T C P C
Sbjct: 102 RSKSRPET---FVCAPTC 116
>gi|220922544|ref|YP_002497846.1| hypothetical protein Mnod_2580 [Methylobacterium nodulans ORS 2060]
gi|219947151|gb|ACL57543.1| hypothetical protein Mnod_2580 [Methylobacterium nodulans ORS 2060]
Length = 217
Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+RI G I V+VG+ +I DV A+ ++ + +T K G TNII++G N +
Sbjct: 52 LRINAGSVEIFAVPEPMSDVLVGESRIADV-AIISDRRIAVTAKAPGRTNIILMGENRKL 110
Query: 95 LLDTEIATFANE 106
L ++ F E
Sbjct: 111 LSKLDVLVFKAE 122
>gi|307318076|ref|ZP_07597512.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|306896117|gb|EFN26867.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
Length = 170
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 54 VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVY 113
VI+G+ I +L ++TV++TGK GSTN+IV+ + + + + A+ V V+
Sbjct: 63 VIIGNTGIAQA-SLSDDRTVILTGKTPGSTNLIVIDSDGAEVANLVLDVVASSGRLVTVH 121
Query: 114 TPGTLSFLSCTPRCLP 129
+ +C RC P
Sbjct: 122 QGARRATFTCARRCDP 137
>gi|296444401|ref|ZP_06886366.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
gi|296258048|gb|EFH05110.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
Length = 155
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 52 KQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVR 111
+ +I+G+ + DV L+ + +V+TGK+ G+TN+I+L + +++ I V
Sbjct: 49 QTIIIGNPLVADVTMLKANRLLVVTGKSFGTTNLILLDESGGEVVEQTITVTPASDKLVV 108
Query: 112 VYTPGTLSFLSCTPRCLPS 130
+ S+ +C+P C P+
Sbjct: 109 LRGSRRESY-ACSPDCSPA 126
>gi|16263312|ref|NP_436105.1| hypothetical protein SMa1580 [Sinorhizobium meliloti 1021]
gi|14523991|gb|AAK65517.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
Length = 170
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 54 VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVY 113
VI+G+ I +L ++TV++TGK GSTN+IV+ + + + + A+ V V+
Sbjct: 63 VIIGNTGIAQA-SLSDDRTVILTGKTPGSTNLIVIDSDGAEVANLVLDVVASSGRLVTVH 121
Query: 114 TPGTLSFLSCTPRCLP 129
+ +C RC P
Sbjct: 122 QGARRATFTCARRCDP 137
>gi|307304369|ref|ZP_07584120.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
gi|306902571|gb|EFN33165.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
Length = 170
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 54 VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVY 113
VI+G+ I +L ++TV++TGK GSTN+IV+ + + + + A+ V V+
Sbjct: 63 VIIGNTGIAQA-SLSDDRTVILTGKTPGSTNLIVIDSDGAEVANLVLDVVASSGRLVTVH 121
Query: 114 TPGTLSFLSCTPRCLP 129
+ +C RC P
Sbjct: 122 QGARRATFTCARRCDP 137
>gi|187923645|ref|YP_001895287.1| type II and III secretion system protein [Burkholderia phytofirmans
PsJN]
gi|187714839|gb|ACD16063.1| type II and III secretion system protein [Burkholderia phytofirmans
PsJN]
Length = 468
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 20/90 (22%)
Query: 36 RIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK--TVVITGKNLGSTNIIVLGHNND 93
+IAVG +L ++V +GD + DVL ++ +K V++ GK G+TN+++ + D
Sbjct: 63 QIAVGHTL--------QRVAIGDPSVADVLIIKGDKRGGVLLVGKAAGTTNLMLWSRDRD 114
Query: 94 ILLDTEIATFANEQSTVRVYTPGTLSFLSC 123
L Q TV V TP S L
Sbjct: 115 APL----------QYTVNVTTPAAASLLGA 134
>gi|296158794|ref|ZP_06841623.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
gi|295890999|gb|EFG70788.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
Length = 474
Score = 38.5 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 18/104 (17%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT--VVITGKNLGSTNIIVLGHN 91
RI + VG L ++V +GD + DVL ++ +K V++ GK G+TN+++ +
Sbjct: 59 RIALTVGAQQQLAVGHTLQRVAIGDPSVADVLIIKGDKRGGVLLVGKAAGTTNLMLWARD 118
Query: 92 NDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSSPPVR 135
D L Q TV V TP S L P +P V+
Sbjct: 119 RDAPL----------QYTVDVTTPAAASLLG------PDTPAVK 146
>gi|21673269|ref|NP_661334.1| type II secretion system protein [Chlorobium tepidum TLS]
gi|21646357|gb|AAM71676.1| type II secretion system protein [Chlorobium tepidum TLS]
Length = 445
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 40 GQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
G+S + + V K+V VGD I D + + + + ++GK G+TN+IV G N +
Sbjct: 16 GESRVYRLAVPAKRVAVGDPAIADFIMISPSE-LYLSGKKTGATNLIVWGKNGNF 69
>gi|91783011|ref|YP_558217.1| putative outer membrane channel signal peptide protein, CpaC like
[Burkholderia xenovorans LB400]
gi|91686965|gb|ABE30165.1| Putative outer membrane channel signal peptide protein, CpaC like
protein [Burkholderia xenovorans LB400]
Length = 454
Score = 38.1 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 18/106 (16%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT--VVITGKNLGSTNIIVLG 89
+ RI + VG L +++ +GD + DVL ++ +K V++ GK G+TN+++
Sbjct: 37 AQRIALTVGAQQQLAVGHTLQRIAIGDPSVADVLIIKGDKRGGVLLVGKAAGTTNLMLWA 96
Query: 90 HNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSSPPVR 135
+ D L Q TV V TP S L P +P V+
Sbjct: 97 RDRDAPL----------QYTVDVTTPAAASLLG------PDTPAVK 126
>gi|254587313|emb|CAX83713.1| reverse transcriptase [Schistosoma japonicum]
Length = 819
Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 19 IPT--TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
IPT +A K PED +N +R + +L+ Q P + ++I + L KEKTV+IT
Sbjct: 206 IPTIDSALNKLPEDQANIVRNKISSTLLHQ---KPNNCNMSKNEIYALKQLRKEKTVIIT 262
Query: 77 GKNLGSTNIIV 87
+ G+T +++
Sbjct: 263 RADKGNTTVVM 273
>gi|194335913|ref|YP_002017707.1| type II and III secretion system protein [Pelodictyon
phaeoclathratiforme BU-1]
gi|194308390|gb|ACF43090.1| type II and III secretion system protein [Pelodictyon
phaeoclathratiforme BU-1]
Length = 510
Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 37 IAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ +G+S + +F K+V +GD K+ D + L + + V + GK +GSTN+ V N ++
Sbjct: 59 VPLGESRVYRFAQPIKRVAMGDPKVADYIMLNRFE-VYLLGKKMGSTNLAVWDQNGNL 115
>gi|302381761|ref|YP_003817584.1| CpaC-related secretion pathway protein [Brevundimonas subvibrioides
ATCC 15264]
gi|302192389|gb|ADK99960.1| CpaC-related secretion pathway protein [Brevundimonas subvibrioides
ATCC 15264]
Length = 139
Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 51 PKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTV 110
VIVG+ I DV ++ T+ +TGK G T +I + + E+ +V
Sbjct: 49 AASVIVGNPAIADVTVVDA-NTLFVTGKGYGVTEVIAVDGLGRTIYQGEVIVSGGSTGSV 107
Query: 111 RVYTPGTLSFLSCTPRCLPS 130
RV+ + L+C C S
Sbjct: 108 RVWRGARATELACAASCSAS 127
>gi|149911409|ref|ZP_01900027.1| Flp pilus assembly protein, secretin CpaC [Moritella sp. PE36]
gi|149805517|gb|EDM65522.1| Flp pilus assembly protein, secretin CpaC [Moritella sp. PE36]
Length = 489
Score = 37.4 bits (85), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+ + +RI + +S LQ D +V VG+ I D+L L + + + I GK LG+TN++V
Sbjct: 41 DDDSVRIPIFKSKTLQMDKAIHRVSVGNSDIADILIL-RSRELYIVGKRLGTTNMMVWDK 99
Query: 91 NNDIL 95
+++++
Sbjct: 100 DDNLV 104
>gi|220923702|ref|YP_002499004.1| hypothetical protein Mnod_3797 [Methylobacterium nodulans ORS 2060]
gi|219948309|gb|ACL58701.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
Length = 151
Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 40 GQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTE 99
GQ I++ + V+VGD I DV + E T+V+T K G T++++L + L +
Sbjct: 27 GQVEIVKTSRGARTVVVGDPDIADV-TVANESTIVVTAKENGVTDLVLLDESGREFLRKQ 85
Query: 100 IATFANEQSTVRVY------TPGTLSFLSCTP 125
+ + + TVRVY T + SC P
Sbjct: 86 L-QIGSPELTVRVYRTARETTEAVCTASSCMP 116
>gi|91788411|ref|YP_549363.1| type II and III secretion system protein [Polaromonas sp. JS666]
gi|91697636|gb|ABE44465.1| type II and III secretion system protein [Polaromonas sp. JS666]
Length = 514
Score = 37.0 bits (84), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+I ++ G+S +++ ++ VGD +IVDV+ L + ++ GK++GSTN+I+ ND
Sbjct: 81 QINLSEGKSTLMRLPSPATRLSVGDARIVDVILLNPSELYML-GKSVGSTNLILWNKAND 139
>gi|134295595|ref|YP_001119330.1| type II and III secretion system protein [Burkholderia
vietnamiensis G4]
gi|134138752|gb|ABO54495.1| type II and III secretion system protein [Burkholderia
vietnamiensis G4]
Length = 443
Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK--TVVITGKNLGSTNIIVL- 88
S I +AVG + ++V VGD I DVL ++ + +V++T K G+TN++V
Sbjct: 24 SGTIELAVGAQRQIAAGRALQRVAVGDPAIADVLIMKGSRAGSVLLTAKAPGTTNVMVWE 83
Query: 89 -GHNNDILLDTEIATFANEQSTVRVYTP 115
GH+ + + E+ A Q+ + TP
Sbjct: 84 RGHDEPTVWNVEVVD-AAAQAVLDASTP 110
>gi|227818617|ref|YP_002822588.1| PilQ-like protein; component of type IV pilus [Sinorhizobium fredii
NGR234]
gi|36958873|gb|AAQ87298.1| CpaC [Sinorhizobium fredii NGR234]
gi|227337616|gb|ACP21835.1| PilQ-like protein; component of type IV pilus [Sinorhizobium fredii
NGR234]
Length = 172
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 12/115 (10%)
Query: 20 PTTASQKTPE-DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK 78
PTTA + T + + R+ + + LIL +I+G+ I L +KTV++TGK
Sbjct: 39 PTTALEPTRQTEGVVRVIVDFARPLILARPA--STLIIGNPTIAQA-TLSDDKTVILTGK 95
Query: 79 NLGSTNIIVLGHNN----DILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLP 129
GSTN+IV+ +I+LD +A TV + G ++ SCT RC P
Sbjct: 96 TPGSTNLIVMDAAGAEVANIILD--VAAAGGRLITVDGGS-GRATY-SCTERCDP 146
>gi|150377244|ref|YP_001313839.1| hypothetical protein Smed_5129 [Sinorhizobium medicae WSM419]
gi|150031791|gb|ABR63906.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
Length = 170
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 54 VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVY 113
VI+G+ I +L ++TV++TGK GSTN+IV+ + + + + A V V+
Sbjct: 63 VIIGNTGIAQA-SLSDDRTVILTGKTPGSTNLIVIDRDGAEVANLILDVVAGSGRLVTVH 121
Query: 114 TPGTLSFLSCTPRCLP 129
+ +C RC P
Sbjct: 122 QGLRRATFTCGRRCDP 137
>gi|159111540|ref|XP_001706001.1| Hypothetical protein GL50803_13413 [Giardia lamblia ATCC 50803]
gi|157434093|gb|EDO78327.1| hypothetical protein GL50803_13413 [Giardia lamblia ATCC 50803]
Length = 183
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
GIPT K P + + RI I VG L ++ K V+ D + VL K +TV I+G
Sbjct: 70 GIPTVL--KVPLE-TRRISIVVGLLLFWSLYLIHK-VLEAKDSTIFVLTDAKGRTVRISG 125
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ T + + H ++LL+ I + N
Sbjct: 126 RLCPRTGLYTVKHKENLLLEKSIGEYYN 153
>gi|329891000|ref|ZP_08269343.1| pilQ [Brevundimonas diminuta ATCC 11568]
gi|328846301|gb|EGF95865.1| pilQ [Brevundimonas diminuta ATCC 11568]
Length = 129
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 41 QSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEI 100
Q+ +Q VIV + +I DV + +T+ ITGK+ G T II + L ++
Sbjct: 33 QATRVQLRAPAGSVIVANPRIADV-TVTDARTLFITGKSYGLTEIIAVDALGRPLFQRQV 91
Query: 101 ATFANEQSTVRVYTPG 116
A E +VRV+ G
Sbjct: 92 AVSPGETGSVRVWRGG 107
>gi|23016187|ref|ZP_00055946.1| COG0304: 3-oxoacyl-(acyl-carrier-protein) synthase
[Magnetospirillum magnetotacticum MS-1]
Length = 142
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
S + + +G +++L + V+VG+ I DV +++ +V + GK G+T+++ L
Sbjct: 23 SEALELPLGGAIVLPMRGGVRTVVVGNPAIADV-SVDGPGSVTVFGKGPGATSLVALDAG 81
Query: 92 NDILLDTEIATFANEQSTV-------RVYTPG 116
+L + ++ A ++V + + PG
Sbjct: 82 GGVLAERQVVVLAGGANSVTLRYGTGKTWVPG 113
>gi|297581608|ref|ZP_06943530.1| flp pilus assembly protein [Vibrio cholerae RC385]
gi|297534015|gb|EFH72854.1| flp pilus assembly protein [Vibrio cholerae RC385]
Length = 469
Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 39 VGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDIL 95
V Q+ I+ D + V V D KIV V A + V+++GK++GST+++++G N L
Sbjct: 29 VNQNQIITVDGDIQDVFVSDPKIVVVHA-PSSRHVMVSGKDIGSTDLLIMGENAQTL 84
>gi|209546483|ref|YP_002278401.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|209537727|gb|ACI57661.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length = 495
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 54 VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDIL--LDTEIAT-FANEQSTV 110
+++G ++DV+ L +K++ I GK +G+TNI V G + +L +D +A+ F+ + +
Sbjct: 70 LVIGSADMIDVVPLS-DKSLFIRGKKIGATNISVYGDDKSLLGVIDVRVASDFSEVAAAI 128
Query: 111 RVYTP 115
R P
Sbjct: 129 RSAAP 133
>gi|152989020|ref|YP_001350207.1| putative type II secretion system protein [Pseudomonas aeruginosa
PA7]
gi|150964178|gb|ABR86203.1| probable type II secretion system protein [Pseudomonas aeruginosa
PA7]
Length = 408
Score = 35.8 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
++ +A GQ L+ V K++ +GD +I DV L++ ++++TGK GST++++
Sbjct: 33 QVSVAQGQQNDLRLAVPIKRLAIGDPQIADVQLLDRS-SLLVTGKEQGSTSLLI 85
>gi|153800534|ref|ZP_01955120.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|124123978|gb|EAY42721.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
Length = 382
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 33 NRIRIAVGQSLILQ-------FDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
N + IA GQ+ ++Q D +P Q VG+ + V V A E EK VI + G+ +
Sbjct: 213 NAVMIATGQTGLIQGSSYGVALDAVPSQYCVGELEAVIVEAYENEKPDVIVIEGQGALSH 272
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFL 121
+ I+ ++ + S +RVY G+ +L
Sbjct: 273 PSFCTSASIIRGSQPTAIILQHSPMRVYLSGSEEYL 308
>gi|170696786|ref|ZP_02887895.1| type II and III secretion system protein [Burkholderia graminis
C4D1M]
gi|170138302|gb|EDT06521.1| type II and III secretion system protein [Burkholderia graminis
C4D1M]
Length = 479
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT--VVITGKNLGSTNIIVL 88
+ ++ IAVG L ++V +GD + DVL ++ +KT V++ GK+ G+TN+++
Sbjct: 30 GAEQLDIAVGSQQSLAGGHTLRRVAIGDPSVADVLIIKGDKTGGVLLIGKSPGTTNVMLW 89
Query: 89 GHNNDILLD 97
D L
Sbjct: 90 EQGKDAPLS 98
>gi|307730006|ref|YP_003907230.1| type II and III secretion system protein [Burkholderia sp.
CCGE1003]
gi|307584541|gb|ADN57939.1| type II and III secretion system protein [Burkholderia sp.
CCGE1003]
Length = 490
Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 18/106 (16%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT--VVITGKNLGSTNIIVLG 89
+ ++ + VG L ++V +GD + DVL ++ +KT V++ GK+ GSTN+++
Sbjct: 22 AQQLELLVGSQQSLASGHTLRRVAIGDPSVADVLIIKGDKTGGVLLVGKSPGSTNVMLWE 81
Query: 90 HNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSSPPVR 135
D L V V +P S L P +P VR
Sbjct: 82 QGKDAPL----------SYVVNVSSPAAKSLLG------PGTPSVR 111
>gi|86360580|ref|YP_472468.1| cpaC pilus assembly Q protein [Rhizobium etli CFN 42]
gi|86284682|gb|ABC93741.1| cpaC pilus assembly Q protein [Rhizobium etli CFN 42]
Length = 495
Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 54 VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDIL--LDTEIAT-FANEQSTV 110
+++G ++DV+ L +K++ I GK G+TNI V G + +L +D +A+ F+ S +
Sbjct: 70 LVIGSADMIDVVPL-SDKSLFIRGKKTGATNISVYGDDKSLLGVIDIRVASDFSEVASAI 128
Query: 111 RVYTP 115
R P
Sbjct: 129 RSAAP 133
>gi|83312840|ref|YP_423104.1| Flp pilus assembly protein, secretin CpaC [Magnetospirillum
magneticum AMB-1]
gi|82947681|dbj|BAE52545.1| Flp pilus assembly protein, secretin CpaC [Magnetospirillum
magneticum AMB-1]
Length = 495
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ +++ VG+S+ L K+V++G+ I DV+ + V ITG+ +G TN+ ++ +
Sbjct: 66 AESMQVPVGKSIDLPLPGAVKEVVIGNSDIADVI-VRTPHMVHITGRAVGQTNVFLMDRS 124
Query: 92 NDILLDTEIATFANEQS 108
++ ++A + Q+
Sbjct: 125 GRVMRRIDLAVAIDSQA 141
>gi|317139003|ref|XP_001817209.2| protein kinase C substrate [Aspergillus oryzae RIB40]
Length = 603
Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 16/87 (18%)
Query: 4 KRQREIKNETVRKKGIPTTA--SQKTPEDNSNRIRIAV-GQSLILQFDVLPKQVIVGDDK 60
KRQ+ + +KK + T A QK E+N NR+ I + GQ + L+ D
Sbjct: 203 KRQKSMTTALKKKKELLTDAGRQQKEVEENINRLEIQIQGQEIKLK------------DL 250
Query: 61 IVDVLALEK-EKTVVITGKNLGSTNII 86
D+ +EK E++ V+TGK G N++
Sbjct: 251 EADLEEIEKQERSKVVTGKKAGKVNVL 277
>gi|295133478|ref|YP_003584154.1| outer hypothetical protein, probably involved in nutrient binding
[Zunongwangia profunda SM-A87]
gi|294981493|gb|ADF51958.1| putative outer membrane protein, probably involved in nutrient
binding [Zunongwangia profunda SM-A87]
Length = 1013
Score = 35.0 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQF-DVLPKQVIVGDDKIVDV-LALEK- 69
TV +KG T T D + IR+A G +L+ F K+V+V D K +DV L L++
Sbjct: 5 TVLEKG--TGNGTVTDFDGNYSIRVAPGSTLVFSFVGFETKEVVVSDQKTIDVSLNLDQE 62
Query: 70 --EKTVVIT--GKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF 120
E+TVVI GK L + + + N L N + PG +SF
Sbjct: 63 ALEETVVIAFGGKQLKESQVSSIATINPAELKGPTNNLTN---MIAGRVPGMISF 114
>gi|300704930|ref|YP_003746533.1| pilus assembly secretion protein [Ralstonia solanacearum CFBP2957]
gi|299072594|emb|CBJ43944.1| pilus assembly secretion protein [Ralstonia solanacearum CFBP2957]
Length = 622
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 33 NRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNN 92
+ + + VG+S ++Q + VG+ IV + L +T+ + G+ +G+TN+IV G +
Sbjct: 98 SEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAM-LVSPQTLYLLGQEVGTTNMIVQGRSG 156
Query: 93 DI-LLDTEI-ATFANEQSTVRVYTPGT 117
++D + A QST+R PG
Sbjct: 157 SCSVIDVSVGADPGGLQSTLRTLVPGA 183
>gi|83765064|dbj|BAE55207.1| unnamed protein product [Aspergillus oryzae]
Length = 570
Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 16/87 (18%)
Query: 4 KRQREIKNETVRKKGIPTTA--SQKTPEDNSNRIRIAV-GQSLILQFDVLPKQVIVGDDK 60
KRQ+ + +KK + T A QK E+N NR+ I + GQ + L+ D
Sbjct: 170 KRQKSMTTALKKKKELLTDAGRQQKEVEENINRLEIQIQGQEIKLK------------DL 217
Query: 61 IVDVLALEK-EKTVVITGKNLGSTNII 86
D+ +EK E++ V+TGK G N++
Sbjct: 218 EADLEEIEKQERSKVVTGKKAGKVNVL 244
>gi|283787693|ref|YP_003367558.1| tight adherence secretin RcpA [Citrobacter rodentium ICC168]
gi|282951147|emb|CBG90838.1| putative tight adherence secretin RcpA [Citrobacter rodentium
ICC168]
Length = 482
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 40 GQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTE 99
GQS F + + D ++ D + K +++ KN G+T++IV G NN +LL
Sbjct: 41 GQSRNFHFTGDLDTIFISDPRVADYKVVN-NKNIIVYAKNTGTTDLIVYGRNNTVLLKHS 99
Query: 100 IA 101
I+
Sbjct: 100 IS 101
>gi|238482029|ref|XP_002372253.1| protein kinase C substrate, putative [Aspergillus flavus NRRL3357]
gi|220700303|gb|EED56641.1| protein kinase C substrate, putative [Aspergillus flavus NRRL3357]
Length = 570
Score = 35.0 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 16/87 (18%)
Query: 4 KRQREIKNETVRKKGIPTTA--SQKTPEDNSNRIRIAV-GQSLILQFDVLPKQVIVGDDK 60
KRQ+ + +KK + T A QK E+N NR+ I + GQ + L+ D
Sbjct: 170 KRQKSMTTALKKKKELLTDAGRQQKEVEENINRLEIQIQGQEIKLK------------DL 217
Query: 61 IVDVLALEK-EKTVVITGKNLGSTNII 86
D+ +EK E++ V+TGK G N++
Sbjct: 218 EADLEEIEKQERSKVVTGKKAGKVNVL 244
>gi|312892116|ref|ZP_07751615.1| conserved hypothetical protein [Mucilaginibacter paludis DSM 18603]
gi|311295404|gb|EFQ72574.1| conserved hypothetical protein [Mucilaginibacter paludis DSM 18603]
Length = 677
Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 40 GQSLILQFDVLPKQVIVGDDKIVDVLALEKEK---TVVITGKNLGSTNIIVLGHNNDIL- 95
GQS+ D +P + DD+++D L +EK TV+ K + TN +L + +
Sbjct: 16 GQSVNHMRDTVPTTKKLTDDELLDTLRKREEKKRDTVIFNSKFIKVTNERLLNDSTQVFP 75
Query: 96 LDTEIATFANEQSTVRVYTP 115
LDT +A F N + ++P
Sbjct: 76 LDTGLANFENYSPLYQPHSP 95
>gi|207728106|ref|YP_002256500.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
MolK2]
gi|206591351|emb|CAQ56963.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
MolK2]
Length = 626
Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 33 NRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNN 92
+ + + VG+S ++Q + VG+ IV + L +T+ + G+ +G+TN+IV G +
Sbjct: 98 SEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAM-LVSPQTLYLLGQEVGTTNMIVQGRSG 156
Query: 93 DI-LLDTEI-ATFANEQSTVRVYTPGT 117
++D + A QST+R PG
Sbjct: 157 SCSVIDVSVGADPGGLQSTLRTLMPGA 183
>gi|218459699|ref|ZP_03499790.1| cpaC pilus assembly Q protein [Rhizobium etli Kim 5]
Length = 409
Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 54 VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDIL--LDTEIAT-FANEQSTV 110
+++G ++DV+ L ++++ + GK +G+TNI V G + +L +D +A+ F+ S +
Sbjct: 70 LVIGSADMIDVVPLS-DRSLFVRGKKIGATNISVYGDDKSLLGVIDIRVASDFSEVASAI 128
Query: 111 RVYTP 115
R P
Sbjct: 129 RSAAP 133
>gi|254293210|ref|YP_003059233.1| hypothetical protein Hbal_0842 [Hirschia baltica ATCC 49814]
gi|254041741|gb|ACT58536.1| hypothetical protein Hbal_0842 [Hirschia baltica ATCC 49814]
Length = 166
Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
T S+ N I + + Q+ +L +IVG+ + V A+ T+++TG +
Sbjct: 53 TMVSEAANPAQENEIDVYIDQTQLLHLGTPMGSIIVGNPDVATV-AVHDNHTLLLTGLSF 111
Query: 81 GSTNIIVL 88
G+TN+IVL
Sbjct: 112 GTTNLIVL 119
>gi|114568966|ref|YP_755646.1| hypothetical protein Mmar10_0415 [Maricaulis maris MCS10]
gi|114339428|gb|ABI64708.1| conserved hypothetical protein [Maricaulis maris MCS10]
Length = 152
Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
++ + + V + +++ ++VG+ I D L + +T+V+TG+ G TN+I L
Sbjct: 21 AHDLAVPVEHAEVIRLPAEASAIVVGNPSIADAL-VHDGRTLVVTGRLQGRTNVIALDRV 79
Query: 92 NDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
++ + +I + V ++ S LSC C
Sbjct: 80 GRVIYERDIVVSNPVEGQVALFRGPNQSTLSCGAVC 115
>gi|207744158|ref|YP_002260550.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
IPO1609]
gi|206595562|emb|CAQ62489.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
IPO1609]
Length = 626
Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 33 NRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNN 92
+ + + VG+S ++Q + VG+ IV + L +T+ + G+ +G+TN+IV G +
Sbjct: 98 SEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAM-LVSPQTLYLLGQEVGTTNMIVQGRSG 156
Query: 93 DI-LLDTEI-ATFANEQSTVRVYTPGT 117
++D + A QST+R PG
Sbjct: 157 SCSVIDVSVGADPGGLQSTLRTLMPGA 183
>gi|313106823|ref|ZP_07793035.1| RcpA [Pseudomonas aeruginosa 39016]
gi|310879537|gb|EFQ38131.1| RcpA [Pseudomonas aeruginosa 39016]
Length = 416
Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
R+ + GQ L+ V +++ +GD KI DV L++ + ++TGK GST++++
Sbjct: 41 RVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDR-RGFLVTGKEQGSTSLLI 93
>gi|218893396|ref|YP_002442265.1| RcpA [Pseudomonas aeruginosa LESB58]
gi|254239026|ref|ZP_04932349.1| hypothetical protein PACG_05203 [Pseudomonas aeruginosa C3719]
gi|296391003|ref|ZP_06880478.1| putative type II secretion system protein [Pseudomonas aeruginosa
PAb1]
gi|126170957|gb|EAZ56468.1| hypothetical protein PACG_05203 [Pseudomonas aeruginosa C3719]
gi|218773624|emb|CAW29438.1| RcpA [Pseudomonas aeruginosa LESB58]
Length = 416
Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
R+ + GQ L+ V +++ +GD KI DV L++ + ++TGK GST++++
Sbjct: 41 RVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDR-RGFLVTGKEQGSTSLLI 93
>gi|15599500|ref|NP_252994.1| RcpA [Pseudomonas aeruginosa PAO1]
gi|254244885|ref|ZP_04938207.1| hypothetical protein PA2G_05758 [Pseudomonas aeruginosa 2192]
gi|9950526|gb|AAG07692.1|AE004846_9 RcpA [Pseudomonas aeruginosa PAO1]
gi|126198263|gb|EAZ62326.1| hypothetical protein PA2G_05758 [Pseudomonas aeruginosa 2192]
Length = 416
Score = 34.7 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
R+ + GQ L+ V +++ +GD KI DV L++ + ++TGK GST++++
Sbjct: 41 RVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDR-RGFLVTGKEQGSTSLLI 93
>gi|107100112|ref|ZP_01364030.1| hypothetical protein PaerPA_01001133 [Pseudomonas aeruginosa
PACS2]
Length = 408
Score = 34.7 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
R+ + GQ L+ V +++ +GD KI DV L++ + ++TGK GST++++
Sbjct: 33 RVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDR-RGFLVTGKEQGSTSLLI 85
>gi|83749638|ref|ZP_00946621.1| GspD-related protein; cpaC1 [Ralstonia solanacearum UW551]
gi|83723699|gb|EAP70894.1| GspD-related protein; cpaC1 [Ralstonia solanacearum UW551]
Length = 401
Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 33 NRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNN 92
+ + + VG+S ++Q + VG+ IV + L +T+ + G+ +G+TN+IV G +
Sbjct: 98 SEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAM-LVSPQTLYLLGQEVGTTNMIVQGRSG 156
Query: 93 DI-LLDTEI-ATFANEQSTVRVYTPGT 117
++D + A QST+R PG
Sbjct: 157 SCSVIDVSVGADPGGLQSTLRTLMPGA 183
>gi|116052338|ref|YP_792649.1| putative type II secretion system protein [Pseudomonas aeruginosa
UCBPP-PA14]
gi|115587559|gb|ABJ13574.1| putative type II secretion system protein [Pseudomonas aeruginosa
UCBPP-PA14]
Length = 416
Score = 34.7 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
R+ + GQ L+ V +++ +GD KI DV L++ + ++TGK GST++++
Sbjct: 41 RVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDR-RGFLVTGKEQGSTSLLI 93
>gi|330470582|ref|YP_004408325.1| oligopeptide/dipeptide ABC transporter ATPase [Verrucosispora maris
AB-18-032]
gi|328813553|gb|AEB47725.1| oligopeptide/dipeptide ABC transporter ATPase subunit
[Verrucosispora maris AB-18-032]
Length = 367
Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 20/139 (14%)
Query: 2 HRKRQREIKNETVRKKGIPTTASQKTPEDNSN--RIRIAVGQSLILQFDVLPKQVIVGDD 59
+R+ +R+I +ET+ K G+P A + P + S R RI + ++L+L ++IV D+
Sbjct: 131 NREERRKIISETLDKVGLPRWALSRYPHEFSGGQRQRIGIARALVLG-----PELIVADE 185
Query: 60 KIVDVLALEKEKTVVITGK---NLGSTNII------VLGHNNDILLDTEIATFANEQSTV 110
+ + + + V + + +LG T ++ V+ H +D + + E
Sbjct: 186 PVSALDVSIQAQVVNLLDELQDSLGLTYLVIAHDLAVVRHISDTVGVMYLGALVEEAPGD 245
Query: 111 RVYT----PGTLSFLSCTP 125
R+YT P T + +S P
Sbjct: 246 RLYTEPLHPYTRALMSAVP 264
>gi|50119734|ref|YP_048901.1| hypothetical protein ECA0789 [Pectobacterium atrosepticum SCRI1043]
gi|49610260|emb|CAG73703.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043]
Length = 478
Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
T A+ + +N + + V Q +LQ D LP V+V D I L + + K++
Sbjct: 42 TMAAGVSEVAETNVVHLTVHQGRLLQLDALPDSVLVADPNIAS-FELPSPGNLFVYAKSV 100
Query: 81 GSTNIIVLGHNNDIL 95
G+T + + N +++
Sbjct: 101 GTTTLYAMDENGNVI 115
>gi|229526569|ref|ZP_04415973.1| EBNA-1 nuclear protein [Vibrio cholerae bv. albensis VL426]
gi|229336727|gb|EEO01745.1| EBNA-1 nuclear protein [Vibrio cholerae bv. albensis VL426]
Length = 177
Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 33 NRIRIAVGQSLILQ-------FDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
N + IA GQ+ ++Q D +P Q VG+ + V V A E EK VI + G+ +
Sbjct: 8 NAVMIATGQTGLIQGSSYGVALDAVPSQYCVGELEAVIVEAYENEKPDVIVIEGQGALSH 67
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFL 121
+ I+ ++ + S +RVY G+ +L
Sbjct: 68 PSFCTSASIIRGSQPTAIILQHSPMRVYLSGSEEYL 103
>gi|292491519|ref|YP_003526958.1| type II and III secretion system protein [Nitrosococcus halophilus
Nc4]
gi|291580114|gb|ADE14571.1| type II and III secretion system protein [Nitrosococcus halophilus
Nc4]
Length = 565
Score = 33.9 bits (76), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
D ++ + +S +++ + K++ VG+ I D+L L + V+ GK LG+TN++V
Sbjct: 58 DIEGDFQVPLYKSGVIELEERAKRISVGNPGIADILMLHSRQLYVV-GKALGTTNVVVWD 116
Query: 90 HNNDILLDTEI 100
N + I
Sbjct: 117 KNERVFASFNI 127
>gi|220923688|ref|YP_002498990.1| hypothetical protein Mnod_3781 [Methylobacterium nodulans ORS 2060]
gi|219948295|gb|ACL58687.1| hypothetical protein Mnod_3781 [Methylobacterium nodulans ORS 2060]
Length = 169
Score = 33.9 bits (76), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
++ + + VG S IL+ + +GD I D T+++TGK +G+TNII L
Sbjct: 27 ADTLDLTVGHSQILRPGKAVGTIAIGDPDIADATTAAG-GTILVTGKKIGTTNIIALDET 85
Query: 92 NDILLDTEI 100
+L + +
Sbjct: 86 GSEVLASTL 94
>gi|297580081|ref|ZP_06942008.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|297535727|gb|EFH74561.1| conserved hypothetical protein [Vibrio cholerae RC385]
Length = 382
Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 33 NRIRIAVGQSLILQ-------FDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
N + IA GQ+ ++Q D +P Q VG+ + V V A + EK VI + G+ +
Sbjct: 213 NAVMIATGQTGLIQGSSYGVALDAVPSQYCVGELEAVIVEAYDNEKPDVIVIEGQGALSH 272
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFL 121
+ I+ ++ + S +RVY G+ +L
Sbjct: 273 PSFCTSASIIRGSQPTAIILQHSPMRVYLSGSEEYL 308
>gi|209809170|ref|YP_002264708.1| type II/III secretion system protein [Aliivibrio salmonicida
LFI1238]
gi|208010732|emb|CAQ81123.1| type II/III secretion system protein [Aliivibrio salmonicida
LFI1238]
Length = 445
Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 54 VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIA---TFANEQSTV 110
V + D KI D ++K K +VI GK++GS+++++ G + L + +I + A Q +
Sbjct: 49 VFLSDPKIADYQVIDKRK-IVIYGKSIGSSSVLIFGEKGNTLSNKKIMVNKSLATIQQYI 107
Query: 111 RVYTPGT 117
V P T
Sbjct: 108 SVKYPDT 114
>gi|262402959|ref|ZP_06079519.1| hypothetical protein VOA_000940 [Vibrio sp. RC586]
gi|262350458|gb|EEY99591.1| hypothetical protein VOA_000940 [Vibrio sp. RC586]
Length = 382
Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 33 NRIRIAVGQSLILQ-------FDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
N + IA GQ+ ++Q D +P Q VG+ + V V A + EK VI + G+ +
Sbjct: 213 NAVMIATGQTGLIQGSSYGVALDAVPSQYCVGELEAVIVEAYDNEKPDVIVIEGQGALSH 272
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFL 121
+ I+ ++ + S +RVY G+ +L
Sbjct: 273 PSFCTSASIIRGSQPTAIILQHSPMRVYLSGSEEYL 308
>gi|167624205|ref|YP_001674499.1| type II and III secretion system protein [Shewanella halifaxensis
HAW-EB4]
gi|167354227|gb|ABZ76840.1| type II and III secretion system protein [Shewanella halifaxensis
HAW-EB4]
Length = 478
Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A TP ++ RI + +S +L + +V VG+ I D+ L ++ + I GK LGS
Sbjct: 23 AGGPTPGARNDIQRIPIFKSRVLMLNGPIHRVSVGNPSIADIKLLPNDE-LYILGKQLGS 81
Query: 83 TNIIVLGHNNDI--LLDTEI 100
TNI++ N + ++D E+
Sbjct: 82 TNIMIWDKNEQLARIMDIEV 101
>gi|27378611|ref|NP_770140.1| hypothetical protein blr3500 [Bradyrhizobium japonicum USDA 110]
gi|27351759|dbj|BAC48765.1| blr3500 [Bradyrhizobium japonicum USDA 110]
Length = 550
Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
R+R+ V +S + D +I G IVDV +L + + + GK G+TN+I+
Sbjct: 57 RVRVVVNKSRTFKVDTAFATIIAGSPDIVDVKSL-SDHMIYVQGKQTGTTNVILF 110
>gi|327189767|gb|EGE56911.1| cpaC pilus assembly Q protein [Rhizobium etli CNPAF512]
Length = 495
Score = 33.9 bits (76), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 54 VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDIL--LDTEIAT-FANEQSTV 110
+++G ++DV+ L +K++ + GK G+TNI V G + +L +D +A+ F+ + +
Sbjct: 70 LVIGSADMIDVVPLS-DKSLFVRGKKTGATNISVYGDDKSLLGVIDIRVASDFSEVSAAI 128
Query: 111 RVYTP 115
R P
Sbjct: 129 RSAAP 133
>gi|220922532|ref|YP_002497834.1| type II and III secretion system protein [Methylobacterium nodulans
ORS 2060]
gi|219947139|gb|ACL57531.1| type II and III secretion system protein [Methylobacterium nodulans
ORS 2060]
Length = 479
Score = 33.9 bits (76), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
R+R+ V +S ++ +++G KI +V+ L ++T+ I GK +G+TN+ ++ N
Sbjct: 16 RVRVPVNKSQTMRVVAPFSDILIGASKIAEVIPL-SDQTLYILGKEVGTTNVSLVDANKK 74
Query: 94 IL--LDTEIA 101
++ +D E+
Sbjct: 75 VIGVVDVEVG 84
>gi|107022594|ref|YP_620921.1| type II and III secretion system protein [Burkholderia
cenocepacia AU 1054]
gi|116689543|ref|YP_835166.1| type II and III secretion system protein [Burkholderia
cenocepacia HI2424]
gi|170732847|ref|YP_001764794.1| type II and III secretion system protein [Burkholderia
cenocepacia MC0-3]
gi|105892783|gb|ABF75948.1| type II and III secretion system protein [Burkholderia
cenocepacia AU 1054]
gi|116647632|gb|ABK08273.1| type II and III secretion system protein [Burkholderia
cenocepacia HI2424]
gi|169816089|gb|ACA90672.1| type II and III secretion system protein [Burkholderia
cenocepacia MC0-3]
Length = 443
Score = 33.5 bits (75), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK-TVVITGKNLGSTNIIVL 88
D S I +A+G + ++V VGD + DVL ++ + V++ KN G+TN+++
Sbjct: 25 DTSGTISLAIGAQRQIATGRALQRVAVGDPSVADVLVVKGGRGGVLLVAKNAGATNVMIW 84
Query: 89 GHNND 93
D
Sbjct: 85 ERGRD 89
>gi|261212914|ref|ZP_05927198.1| hypothetical protein VCJ_003190 [Vibrio sp. RC341]
gi|260837979|gb|EEX64656.1| hypothetical protein VCJ_003190 [Vibrio sp. RC341]
Length = 308
Score = 33.5 bits (75), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 33 NRIRIAVGQSLILQ-------FDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
N + IA GQ+ ++Q D +P Q VG+ + V V A + EK VI + G+ +
Sbjct: 139 NAVMIATGQTGLIQGSSYGVALDAVPSQYCVGELEAVIVEAYDNEKPDVIVIEGQGALSH 198
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFL 121
+ I+ ++ + S +RVY G+ +L
Sbjct: 199 PSFCTSASIIRGSQPTAIILQHSPMRVYLSGSEEYL 234
>gi|206559894|ref|YP_002230658.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
gi|198035935|emb|CAR51827.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
Length = 443
Score = 33.5 bits (75), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK-TVVITGKNLGSTNIIVL 88
D S I +A+G + ++V VGD + DVL ++ + V++ KN G+TN+++
Sbjct: 25 DTSGTISLAIGAQRQIATGRALQRVAVGDPSVADVLVVKGGRGGVLLVAKNAGATNVMIW 84
Query: 89 GHNND 93
D
Sbjct: 85 ERGRD 89
>gi|126733573|ref|ZP_01749320.1| bacterial type II/III secretion system protein [Roseobacter sp.
CCS2]
gi|126716439|gb|EBA13303.1| bacterial type II/III secretion system protein [Roseobacter sp.
CCS2]
Length = 476
Score = 33.5 bits (75), Expect = 9.6, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
S+ + + + ++++++ DV ++ + + I D+ +L ++T+ + GK G T + +LG N
Sbjct: 39 SSALSVPMSRAVVVESDVPFTELSIANPGIADISSLS-DRTIYVLGKEPGRTTLTLLGEN 97
Query: 92 NDILLDTEI 100
++ + EI
Sbjct: 98 GRLITNVEI 106
Searching..................................................done
Results from round 2
>gi|255764483|ref|YP_003065151.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254547834|gb|ACT57211.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 135
Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats.
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MHRKRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDK 60
MHRKRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDK
Sbjct: 1 MHRKRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDK 60
Query: 61 IVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF 120
IVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF
Sbjct: 61 IVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF 120
Query: 121 LSCTPRCLPSSPPVR 135
LSCTPRCLPSSPPVR
Sbjct: 121 LSCTPRCLPSSPPVR 135
>gi|222084464|ref|YP_002542993.1| hypothetical protein Arad_0357 [Agrobacterium radiobacter K84]
gi|221721912|gb|ACM25068.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 139
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Query: 9 IKNETVRKKGIPTTA---SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVL 65
I+ T G+ A Q + + +R+ + + +L+ D +VIVG+ ++ D
Sbjct: 3 IRGRTAFLAGVAAMAGLMPQLSRAADDGMLRVYMDHARVLKLDRPVSKVIVGNAQVADA- 61
Query: 66 ALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTP 125
+ KT+V+TG++ G+TNI++L + + ++D I +E +TVRV+ S LSCTP
Sbjct: 62 TVADPKTIVLTGRSFGTTNIVLLDADGNAIVDERILVSIDEGNTVRVFRQTNRSVLSCTP 121
Query: 126 RCL 128
C
Sbjct: 122 NCE 124
>gi|315121901|ref|YP_004062390.1| hypothetical protein CKC_00755 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495303|gb|ADR51902.1| hypothetical protein CKC_00755 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 206
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 76/128 (59%), Positives = 96/128 (75%), Gaps = 1/128 (0%)
Query: 4 KRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVD 63
KR+ EI+ + + T + Q T D RIRIA+GQS++L+FD LP +VI+G+D+I D
Sbjct: 77 KRRTEIQKNATKPRTTNTPSPQPTTND-EKRIRIAIGQSIVLKFDSLPSEVIIGNDQITD 135
Query: 64 VLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSC 123
VLALEKEK++VITGK G TNIIVLG N +LL+T+I +F NE TVRVYTP LSFLSC
Sbjct: 136 VLALEKEKSIVITGKKSGLTNIIVLGAGNKVLLETDILSFPNEHDTVRVYTPEKLSFLSC 195
Query: 124 TPRCLPSS 131
TPRCLP+S
Sbjct: 196 TPRCLPNS 203
>gi|218671456|ref|ZP_03521126.1| pilus subunit transmembrane protein [Rhizobium etli GR56]
Length = 135
Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 11 NETVRKKGIPTT--ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
+T+ G+ S + + + +R+ + + +L+ D +VIVG+ K+ D +
Sbjct: 5 GKTIFFAGMIAVFGVSGVSAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADA-TVA 63
Query: 69 KEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
KT+V+TG++ G+TN+++L + + +LD I +E +TVRVY S LSCTP C
Sbjct: 64 DAKTIVLTGRSFGTTNLVLLDADGNAILDERILVSIDEGNTVRVYRQTERSVLSCTPNCE 123
Query: 129 PSS 131
+
Sbjct: 124 QHA 126
>gi|218506995|ref|ZP_03504873.1| pilus subunit transmembrane protein [Rhizobium etli Brasil 5]
Length = 151
Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 11 NETVRKKGIPTT--ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
+TV G+ S + + + +R+ + + +L+ D +VIVG+ K+ D +
Sbjct: 5 GKTVFFAGMIAVFGVSGISTAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADA-TVA 63
Query: 69 KEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
KT+V+TG++ G+TN+++L + + +LD I +E +TVRVY S LSCTP C
Sbjct: 64 DAKTIVLTGRSFGTTNLVLLDADGNAILDERILVSIDEGNTVRVYRQTERSVLSCTPNCE 123
Query: 129 PSS 131
+
Sbjct: 124 QHA 126
>gi|327194698|gb|EGE61544.1| pilus subunit transmembrane protein [Rhizobium etli CNPAF512]
Length = 136
Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 11 NETVRKKGIPTT--ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
+TV G+ S + + + +R+ + + +L+ D +VIVG+ K+ D +
Sbjct: 5 GKTVFFAGMIAVFGVSGISTAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADA-TVA 63
Query: 69 KEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
KT+V+TG++ G+TN+++L + + +LD I +E +TVRVY S LSCTP C
Sbjct: 64 DAKTIVLTGRSFGTTNLVLLDADGNAILDERILVSIDEGNTVRVYRQTERSVLSCTPNCE 123
Query: 129 PSS 131
+
Sbjct: 124 QHA 126
>gi|190889877|ref|YP_001976419.1| pilus subunit transmembrane protein [Rhizobium etli CIAT 652]
gi|190695156|gb|ACE89241.1| pilus subunit transmembrane protein [Rhizobium etli CIAT 652]
Length = 136
Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 11 NETVRKKGIPTT--ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
+TV G+ S + + + +R+ + + +L+ D +VIVG+ K+ D +
Sbjct: 5 GKTVFFAGMIAVFGVSGISAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADA-TVA 63
Query: 69 KEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
KT+V+TG++ G+TN+++L + + +LD I +E +TVRVY S LSCTP C
Sbjct: 64 DAKTIVLTGRSFGTTNLVLLDADGNAILDERILVSIDEGNTVRVYRQTERSVLSCTPNCE 123
Query: 129 PSS 131
+
Sbjct: 124 QHA 126
>gi|209551755|ref|YP_002283672.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537511|gb|ACI57446.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 136
Score = 153 bits (387), Expect = 6e-36, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 11 NETVRKKGIPTT--ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
+T+ G+ S + + + +R+ + + +L+ D +VIVG+ K+ D +
Sbjct: 5 GKTIFFAGMIAVFGVSGVSAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADA-TVA 63
Query: 69 KEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
KT+V+TG++ G+TN+++L + + +LD I +E +TVRVY S LSCTP C
Sbjct: 64 DAKTIVLTGRSFGTTNLVLLDADGNAILDERILVSIDEGNTVRVYRQTERSVLSCTPNCE 123
Query: 129 PSS 131
+
Sbjct: 124 QHA 126
>gi|222147187|ref|YP_002548144.1| pilus subunit transmembrane protein [Agrobacterium vitis S4]
gi|221734177|gb|ACM35140.1| pilus subunit transmembrane protein [Agrobacterium vitis S4]
Length = 159
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 16 KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
+P TA + P +R+ + Q+ IL+ D +VI+G++K+ D + KT+V+
Sbjct: 29 MATVPGTAHAEDP-----LLRVVMNQARILKLDRPVSKVIIGNEKVADA-TVADPKTIVL 82
Query: 76 TGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSS 131
TG++ G+TN+++L + + D I +E +TVR+Y + LSCTP C S
Sbjct: 83 TGRSFGTTNLVLLDSQGNAIFDERILVSIDEANTVRLYKQTQRTVLSCTPSCEQHS 138
>gi|218461610|ref|ZP_03501701.1| pilus subunit transmembrane protein [Rhizobium etli Kim 5]
Length = 124
Score = 150 bits (380), Expect = 4e-35, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+ + + +R+ + + +L+ D +VIVG+ K+ D + KT+V+TG++ G+TN++
Sbjct: 11 SAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADA-TVADAKTIVLTGRSFGTTNLV 69
Query: 87 VLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSS 131
+L + + +LD I +E +TVRVY S LSCTP C +
Sbjct: 70 LLDADGNAILDERILVSIDEGNTVRVYRQTERSVLSCTPNCEQHA 114
>gi|227823967|ref|YP_002827940.1| component of type IV pilus PilQ1 [Sinorhizobium fredii NGR234]
gi|227342969|gb|ACP27187.1| component of type IV pilus PilQ1 [Sinorhizobium fredii NGR234]
Length = 141
Score = 146 bits (368), Expect = 9e-34, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
+ + + +R+ + + +L+ D +VI+G+ + D + KT+V+TG+N G+T
Sbjct: 25 AAEKTDAAEQMMRVYMDHARVLKLDRPVSKVIIGNSDVADA-TVADSKTIVLTGRNFGTT 83
Query: 84 NIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSS 131
N+++L + + ++D I +E +T+RVY T + SC+P C +
Sbjct: 84 NLVILDQDGNAIVDERILVSIDEGNTLRVYKQTTRTVFSCSPNCERHA 131
>gi|159184220|ref|NP_353258.2| hypothetical protein Atu0226 [Agrobacterium tumefaciens str. C58]
gi|159139548|gb|AAK86043.2| PilQ [Agrobacterium tumefaciens str. C58]
Length = 127
Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A+ + + +R+++ + +L+ D +VIVG+ K+ D + T+V+TG++ G+
Sbjct: 10 AAAQPVFAQDDILRVSMNHARVLRLDRPVSKVIVGNSKVADA-TVADATTIVLTGRSFGT 68
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSS 131
TN+++L + ++D I +E +TVRV+ + LSCTP C S
Sbjct: 69 TNLVLLDAEGNPIVDERILVSIDEGNTVRVFRQTERTVLSCTPNCEQHS 117
>gi|325291663|ref|YP_004277527.1| hypothetical protein AGROH133_03290 [Agrobacterium sp. H13-3]
gi|325059516|gb|ADY63207.1| hypothetical protein AGROH133_03290 [Agrobacterium sp. H13-3]
Length = 136
Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ +R+++ + +L+ D +VIVG+ K+ D + T+V+TG++ G+TN+++L
Sbjct: 26 AQEDILRVSMNHARVLRLDRPVSKVIVGNSKVADA-TVADATTIVLTGRSFGTTNLVLLD 84
Query: 90 HNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSS 131
+ ++D I +E +TVRV+ + LSCTP C S
Sbjct: 85 AEGNPIVDERILVSIDEGNTVRVFRQTERTVLSCTPNCEQHS 126
>gi|153008055|ref|YP_001369270.1| hypothetical protein Oant_0719 [Ochrobactrum anthropi ATCC 49188]
gi|151559943|gb|ABS13441.1| conserved hypothetical protein [Ochrobactrum anthropi ATCC 49188]
Length = 139
Score = 144 bits (362), Expect = 5e-33, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
P + I + Q+ IL+ V++G+ I D ++ +T+V+TGK+ G TN
Sbjct: 26 AAIPASAEDYIALETSQARILRLARPADSVVIGNPSIADA-VVQDAQTIVLTGKDFGVTN 84
Query: 85 IIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSS 131
I+V+ + +LD E+ N + T R+Y + LSCTP C +S
Sbjct: 85 IVVMDKQGEPILDRELVVSRNARGTTRIYRQAEVQTLSCTPYCEKAS 131
>gi|163757621|ref|ZP_02164710.1| putative pilus subunit transmembrane protein [Hoeflea phototrophica
DFL-43]
gi|162285123|gb|EDQ35405.1| putative pilus subunit transmembrane protein [Hoeflea phototrophica
DFL-43]
Length = 136
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
I + T + + IR+ + + IL+ D +VI+G+ + DV + +T
Sbjct: 14 AAFGMAIAVLSP-LTAVADEDLIRVFMDHARILKLDRTVSKVIIGNAAVADV-TVSDPRT 71
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSSP 132
+V+TGK+ G+TN+++L + ++D I +E +T+RV+ S SC+P C P
Sbjct: 72 IVLTGKSYGTTNLVILDQEGEAIVDERILVSVDEANTLRVFKQTARSVYSCSPSCEEHKP 131
>gi|150398537|ref|YP_001329004.1| hypothetical protein Smed_3348 [Sinorhizobium medicae WSM419]
gi|150030052|gb|ABR62169.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
Length = 140
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
+ + +R+ + + +L+ D +VI+G+ + D + KT+V+TG
Sbjct: 19 ALSGGHAPSGARAAEEMMRVYMDHARVLKLDRPVSKVIIGNSDVADA-TVADAKTIVLTG 77
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
+N G+TN+++L + + ++D I +E +TVRVY + LSCTP C
Sbjct: 78 RNFGTTNLVILDQDGNAMVDERILVSIDEGNTVRVYKQTVRTVLSCTPNCE 128
>gi|241207153|ref|YP_002978249.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240861043|gb|ACS58710.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 136
Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 11 NETVRKKGIPTT--ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
+T+ G+ S + + + +R+ + + +L+ D +VIVG+ + +
Sbjct: 5 GKTIFFAGMIAVFGISGVSAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAAVA-DATVA 63
Query: 69 KEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
KT+V+TG++ G+TN+++L + + +LD I +E +TVRVY S LSCTP C
Sbjct: 64 DAKTIVLTGRSFGTTNLVLLDADGNAILDERILVSIDEGNTVRVYRQTQRSVLSCTPNCE 123
Query: 129 PS 130
Sbjct: 124 QH 125
>gi|15963890|ref|NP_384243.1| hypothetical protein SMc04115 [Sinorhizobium meliloti 1021]
gi|307315787|ref|ZP_07595301.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
gi|307320422|ref|ZP_07599839.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|15073065|emb|CAC41524.1| Hypothetical protein SMc04115 [Sinorhizobium meliloti 1021]
gi|306893988|gb|EFN24757.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|306898555|gb|EFN29228.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
Length = 138
Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+R+ + + +L+ D +VI+G+ ++ D + KT+V+TG+N G+TN+++L
Sbjct: 29 AAEEMMRVYMDHARVLKLDRPVSKVIIGNAEVADA-TVADAKTIVLTGRNFGTTNLVILD 87
Query: 90 HNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
+ + ++D I +E +TVRVY + LSCTP C
Sbjct: 88 QDGNAMVDERILVSIDEGNTVRVYKQTVRTVLSCTPNCE 126
>gi|116249977|ref|YP_765815.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
viciae 3841]
gi|115254625|emb|CAK05699.1| putative pilus subunit transmembrane protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 136
Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 11 NETVRKKGIPTT--ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
+T+ G+ S + + + +R+ + + +L+ D +VIVG+ + +
Sbjct: 5 GKTIFFAGMIAVFGISGVSAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAAVA-DATVA 63
Query: 69 KEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
KT+V+TG++ G+TN+++L + + +LD I +E +TVRVY S LSCTP C
Sbjct: 64 DAKTIVLTGRSFGTTNLVLLDADGNAILDERILVSIDEGNTVRVYRQTQRSVLSCTPNCE 123
Query: 129 PSS 131
+
Sbjct: 124 QHA 126
>gi|239833241|ref|ZP_04681570.1| Hypothetical protein OINT_1002558 [Ochrobactrum intermedium LMG
3301]
gi|239825508|gb|EEQ97076.1| Hypothetical protein OINT_1002558 [Ochrobactrum intermedium LMG
3301]
Length = 139
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+ I + Q+ IL+ V++G+ I D ++ +T+V+TGK+ G TNI+
Sbjct: 28 AQASAEDYIALETSQARILRLARPADSVVIGNPSIADA-VVQDAQTIVLTGKDFGVTNIV 86
Query: 87 VLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSS 131
V+ + +LD E+ N + T R+Y + LSCTP C +S
Sbjct: 87 VMDKQGEPILDRELVVSRNTRGTTRIYRQAEVQTLSCTPYCEKAS 131
>gi|114705461|ref|ZP_01438369.1| hypothetical protein FP2506_10991 [Fulvimarina pelagi HTCC2506]
gi|114540246|gb|EAU43366.1| hypothetical protein FP2506_10991 [Fulvimarina pelagi HTCC2506]
Length = 156
Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats.
Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
I ++ E + I IAV + ILQ D VI+G+ IVD+ L +E+ +V+TG
Sbjct: 15 AILVGSTPAVAEAKKDMIAIAVDHARILQIDRGAGTVIIGNPAIVDIEVLSEER-LVLTG 73
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
K+ G TN+I+L +N +L+D ++A E+STVRVY +C P+C P+
Sbjct: 74 KSYGITNVIILDRDNSVLMDEQVAVQTFEESTVRVYRQANRQTYACAPKCEPT 126
>gi|86355860|ref|YP_467752.1| hypothetical protein RHE_CH00201 [Rhizobium etli CFN 42]
gi|86279962|gb|ABC89025.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 102
Score = 136 bits (343), Expect = 8e-31, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 39 VGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDT 98
+ + +L+ D +VIVG+ ++ D + KT+V+TG++ G+TN+++L + + +LD
Sbjct: 1 MDHARVLKLDRPVSKVIVGNAQVADA-TVADAKTIVLTGRSFGTTNLVLLDADGNAILDE 59
Query: 99 EIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
I +E +TVRVY S LSCTP C
Sbjct: 60 RILVSIDEGNTVRVYRQTERSVLSCTPNCE 89
>gi|90419761|ref|ZP_01227670.1| possible pilus assembly protein (CpaC) [Aurantimonas manganoxydans
SI85-9A1]
gi|90335802|gb|EAS49550.1| possible pilus assembly protein (CpaC) [Aurantimonas manganoxydans
SI85-9A1]
Length = 157
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
D+ + + + V + I+Q D VIVG+ IVDV L + +V+TG++ G T
Sbjct: 22 GNAAAVDSRDVLPVEVDHARIVQIDNPAATVIVGNPAIVDVEVLSSNR-LVLTGRSYGIT 80
Query: 84 NIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
N+++L N DI++D ++A + E +TVRVY + +C P+C P+
Sbjct: 81 NLVILDANGDIVMDQQVAVQSFEDNTVRVYRQASRVTYACAPKCEPT 127
>gi|319785612|ref|YP_004145088.1| hypothetical protein Mesci_6031 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317171500|gb|ADV15038.1| hypothetical protein Mesci_6031 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 140
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 11 NETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKE 70
++ + +S P I + + Q+ I++ ++VG+ I D +++
Sbjct: 5 RSSILIAALLAVSSFVAPAMAGAGIEVTMNQAKIVKLSRPADTIVVGNPAIADA-SVQDA 63
Query: 71 KTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
T+V+TGK G TN++VL + ++D ++ S+VR+Y + +SCTP C S
Sbjct: 64 STIVLTGKGFGVTNLVVLDTDGSPIVDEQVTVVRQAASSVRIYRRAEIQTMSCTPYCESS 123
>gi|260461953|ref|ZP_05810198.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
gi|259032200|gb|EEW33466.1| conserved hypothetical protein [Mesorhizobium opportunistum
WSM2075]
Length = 141
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
P I + + Q+ I++ ++VG+ I D +++ T+V+TGK G TN++V
Sbjct: 22 PARAGTGIEVTMNQAKIVKLSRPADTIVVGNPSIADA-SVQDASTIVLTGKGFGVTNLVV 80
Query: 88 LGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
L ++D ++ S+VR+Y + +SCTP C S
Sbjct: 81 LDQEGSPIVDAQVTVVRQAASSVRIYRRAEVQTMSCTPYCESS 123
>gi|13474655|ref|NP_106224.1| hypothetical protein mll5591 [Mesorhizobium loti MAFF303099]
gi|14025410|dbj|BAB52010.1| mll5591 [Mesorhizobium loti MAFF303099]
Length = 129
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
S TP + I + + Q+ I++ ++VG+ I D +++ T+V+TGK
Sbjct: 4 AATSLITPARAAADIEVTMNQAKIVKLSRPADTIVVGNPAIADA-SVQDASTIVLTGKGF 62
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
G TN++VL ++D ++ S+VR+Y + +SCTP C S
Sbjct: 63 GVTNLVVLDQEGSPIVDAQVTVVRQAASSVRIYRRAEVQTMSCTPYCESS 112
>gi|110636420|ref|YP_676628.1| hypothetical protein Meso_4096 [Mesorhizobium sp. BNC1]
gi|110287404|gb|ABG65463.1| conserved hypothetical protein [Chelativorans sp. BNC1]
Length = 137
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
I I + Q+ I++ V++G+ +I D ++ +T+V+TGK G TNI+ L
Sbjct: 28 IGIVMNQAKIIKLVRPADTVVIGNPEIADA-VVQDAQTIVLTGKGFGVTNIVALDVEGRP 86
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
++D ++ +VR+Y + LSCTP C +
Sbjct: 87 IMDEQVRVSRQTVDSVRIYRRSDVQTLSCTPFCESA 122
>gi|300021849|ref|YP_003754460.1| hypothetical protein Hden_0314 [Hyphomicrobium denitrificans ATCC
51888]
gi|299523670|gb|ADJ22139.1| conserved hypothetical protein [Hyphomicrobium denitrificans ATCC
51888]
Length = 170
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 1 MHRKRQR---EIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVG 57
MHR ++ +R + + ++ + + QS +L +VIVG
Sbjct: 1 MHRGAKKIAASHAGSILRTGIVAAIVALSAAGASAGDLIVRYDQSQLLHLPRPASEVIVG 60
Query: 58 DDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGT 117
+ I DV L+ +V+TGK G TN+I L ++++ D + ++ TV ++ T
Sbjct: 61 NPSIADV-TLQDGNLLVVTGKTFGITNVIALDAAHNVIQDQRVMVERDDTRTVNLHKGST 119
Query: 118 LSFLSCTPRCLPS 130
+CTP C P+
Sbjct: 120 RFTYACTPNCEPT 132
>gi|307943136|ref|ZP_07658481.1| PilQ [Roseibium sp. TrichSKD4]
gi|307773932|gb|EFO33148.1| PilQ [Roseibium sp. TrichSKD4]
Length = 161
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+ + + V ++ + + VIVG+ I DV A+ TVVITGK+ GSTN+
Sbjct: 22 SSAIAQEGPVTVMVDRAKVFRIQEPASTVIVGNPFIADV-AMHDASTVVITGKSYGSTNL 80
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
++L NN+ ++D I A+++ TV V+ SC P C P+
Sbjct: 81 VILDDNNEPIIDEVITVKASDEGTVFVHRNTARQSYSCAPECEPT 125
>gi|118589699|ref|ZP_01547104.1| hypothetical protein SIAM614_04645 [Stappia aggregata IAM 12614]
gi|118437785|gb|EAV44421.1| hypothetical protein SIAM614_04645 [Stappia aggregata IAM 12614]
Length = 154
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
S + + V ++ + + + VIVG+ I DV A+ + TVVITGK+
Sbjct: 13 AVALSTTVAVAQDGPVLVTVDRAKVFRIEDGAAAVIVGNPFIADV-AMFDQNTVVITGKS 71
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLP 129
G+TN+++L +N ++D I A++ V VY + LSC P C P
Sbjct: 72 YGTTNLVILDGDNKPIVDETITVKASDDDVVSVYRKVSRESLSCNPACEP 121
>gi|27376555|ref|NP_768084.1| hypothetical protein blr1444 [Bradyrhizobium japonicum USDA 110]
gi|27349696|dbj|BAC46709.1| blr1444 [Bradyrhizobium japonicum USDA 110]
Length = 165
Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
E ++ I + V Q+ +++ ++VG+ I DV L+ +V+TGK G+TN I
Sbjct: 29 AESTADTIAVNVDQAKLVRLPGKVATIVVGNPLIADV-TLQPGGMIVVTGKGYGATNFIA 87
Query: 88 LGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
L +IL+D +I V VY SC P C
Sbjct: 88 LDRGGEILVDRQIQVEGPSDRLVTVYRGVERESYSCMPICQ 128
>gi|90425192|ref|YP_533562.1| hypothetical protein RPC_3708 [Rhodopseudomonas palustris BisB18]
gi|90107206|gb|ABD89243.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
Length = 165
Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A E + I + V Q+ +++F ++VG+ I DV L+ +V+TGK G+
Sbjct: 26 ALPAMAETANGIIAVNVDQAKLVRFPARIATIVVGNPLIADV-TLQPGGIIVVTGKGYGA 84
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
TN+I + ++LLD I V +Y SCTP C
Sbjct: 85 TNVIAMDRAGEVLLDRVIQVEGPTDQVVTIYRGVDRESYSCTPLCQ 130
>gi|75674503|ref|YP_316924.1| hypothetical protein Nwi_0305 [Nitrobacter winogradskyi Nb-255]
gi|74419373|gb|ABA03572.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
Length = 163
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 1/127 (0%)
Query: 3 RKRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIV 62
R R R I A+ E S I + V Q+ +++ ++VG+ I
Sbjct: 7 RGRSRVSVIGVSFAAAILLGAATAPAEVISEPISVNVDQAKLVRLPGPIATIVVGNPLIA 66
Query: 63 DVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLS 122
DV L+ VV+TGK G+TN+I + I++D I V VY S
Sbjct: 67 DV-TLQPGGLVVVTGKGYGATNMIAMDRAGSIMVDRVIQVEGPSDQVVTVYRGLERESYS 125
Query: 123 CTPRCLP 129
C P C
Sbjct: 126 CMPICQK 132
>gi|154250684|ref|YP_001411508.1| hypothetical protein Plav_0228 [Parvibaculum lavamentivorans DS-1]
gi|154154634|gb|ABS61851.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1]
Length = 172
Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 17 KGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
G+ +ASQ ++ + +S L V+VG+ I DV +E K + +
Sbjct: 24 AGLAVSASQAAD------FQVEMNKSKALHLGQPASTVMVGNPSIADV-TVEGSKLLYVM 76
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
G++ G TNII L + + +LD + + STV + G +CTPRC
Sbjct: 77 GRSYGRTNIIALDSSGETILDINVNVVSQSASTVTLTRGGGQYTYNCTPRCE 128
>gi|92116017|ref|YP_575746.1| hypothetical protein Nham_0395 [Nitrobacter hamburgensis X14]
gi|91798911|gb|ABE61286.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
Length = 161
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
+ E S+ I + V Q+ +++ ++VG+ I DV L+ VV+TGK G+T
Sbjct: 28 TAALAEVTSDPISVNVDQAKLVKLPGHIATIVVGNPLIADV-TLQPGGLVVVTGKGYGAT 86
Query: 84 NIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLP 129
N+I + IL+D I V VY SC P C
Sbjct: 87 NVIAMDRAGSILVDRVIQVEGPSDQVVTVYRGVERESYSCMPVCQK 132
>gi|148258230|ref|YP_001242815.1| hypothetical protein BBta_7025 [Bradyrhizobium sp. BTAi1]
gi|146410403|gb|ABQ38909.1| hypothetical protein BBta_7025 [Bradyrhizobium sp. BTAi1]
Length = 145
Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
I + V Q+ +++ ++VG+ I DV L+ +V+TGK+ G+TN I + +
Sbjct: 16 IAVNVDQAKLVKLPDRVATLVVGNPMIADV-TLQSGGIIVVTGKSYGATNFIAMDRGGQV 74
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
L+D +I V VY SC P C
Sbjct: 75 LVDRQIQVAGPTDRLVTVYRGVDRETYSCMPVCQ 108
>gi|304392391|ref|ZP_07374332.1| PilQ [Ahrensia sp. R2A130]
gi|303295495|gb|EFL89854.1| PilQ [Ahrensia sp. R2A130]
Length = 171
Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 17 KGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
+ A+ + + V ++ +++ VIVG+ IVD ++ +T+V+T
Sbjct: 29 ATVLPVAALADGHSAKKHLEVVVDRARVVRIAKPADTVIVGNPSIVDA-TIQDARTLVLT 87
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
G+ G TNIIVL + D ++D + E + V VY L+C P C +
Sbjct: 88 GRLFGVTNIIVLDSDGDPIVDETVVVKGEETNLVHVYRQANRETLACAPVCQTT 141
>gi|220922775|ref|YP_002498077.1| hypothetical protein Mnod_2823 [Methylobacterium nodulans ORS 2060]
gi|219947382|gb|ACL57774.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
Length = 161
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
A + + ++V + I++ V+VG+ I DV L++ V++TGK+
Sbjct: 25 SGVAQALEAGADPGMVVVSVDNAKIIRLPERTATVVVGNPIIADV-TLQRNGIVILTGKS 83
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
GSTN+I L +L ++ I+ A S V V SCTP C PS
Sbjct: 84 FGSTNLIALDAAGTMLAESFISVQAATSSVVTVQRGLERESYSCTPACQPS 134
>gi|85713500|ref|ZP_01044490.1| hypothetical protein NB311A_03149 [Nitrobacter sp. Nb-311A]
gi|85699404|gb|EAQ37271.1| hypothetical protein NB311A_03149 [Nitrobacter sp. Nb-311A]
Length = 163
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 2/129 (1%)
Query: 1 MHRKRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDK 60
+H + + ++ + + E S I + V Q+ +++ ++VG+
Sbjct: 6 LHGPSRASVIGMSLAAVMLLGPVAAPA-EVTSEPISVNVDQAKLVRLPGHIATIVVGNPL 64
Query: 61 IVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF 120
I DV L+ VV+TGK G+TN+I + IL+D I V VY
Sbjct: 65 IADV-TLQPGGLVVVTGKGYGATNVIAMDRAGSILVDRVIQVEGPSDQVVTVYRGLERES 123
Query: 121 LSCTPRCLP 129
SC P C
Sbjct: 124 YSCMPICQK 132
>gi|218530650|ref|YP_002421466.1| hypothetical protein Mchl_2699 [Methylobacterium chloromethanicum
CM4]
gi|218522953|gb|ACK83538.1| conserved hypothetical protein [Methylobacterium chloromethanicum
CM4]
Length = 159
Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
+ + + V + +++ + V+VG+ I D+ L+K VV+TGK+ G+T
Sbjct: 26 AHANEPVPQGIVSVQVDNAKVIRLPEKTQTVVVGNPMIADI-TLQKNGVVVLTGKSFGTT 84
Query: 84 NIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
N+I L +L ++ I+ A + S + V SCTP C PS
Sbjct: 85 NLIALDGKGAMLAESTISVQAPQASIITVQRGLDRESYSCTPNCQPS 131
>gi|254561617|ref|YP_003068712.1| hypothetical protein METDI3204 [Methylobacterium extorquens DM4]
gi|254268895|emb|CAX24856.1| conserved hypothetical protein; putative exported protein precursor
[Methylobacterium extorquens DM4]
Length = 160
Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + V + +++ + V+VG+ I D+ L+K VV+TGK+ G+TN+I L
Sbjct: 35 QGIVSVQVDNAKVIRLPEKTQTVVVGNPMIADI-TLQKNGVVVLTGKSFGTTNLIALDGK 93
Query: 92 NDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
+L ++ I+ A + S + V SCTP C PS
Sbjct: 94 GAMLAESTISVQAPQASIITVQRGLDRESYSCTPNCQPS 132
>gi|163851899|ref|YP_001639942.1| hypothetical protein Mext_2476 [Methylobacterium extorquens PA1]
gi|240139022|ref|YP_002963497.1| hypothetical protein MexAM1_META1p2441 [Methylobacterium extorquens
AM1]
gi|163663504|gb|ABY30871.1| conserved hypothetical protein [Methylobacterium extorquens PA1]
gi|240008994|gb|ACS40220.1| conserved hypothetical protein; putative exported protein precursor
[Methylobacterium extorquens AM1]
Length = 160
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + V + +++ + V+VG+ I D+ L+K VV+TGK+ G+TN+I L
Sbjct: 35 QGIVSVQVDNAKVIRLPEKTQTVVVGNPMIADI-TLQKNGVVVLTGKSFGTTNLIALDGK 93
Query: 92 NDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
+L ++ I+ A + S + V SCTP C PS
Sbjct: 94 GAMLAESTISVQAPQASIITVQRGLDRESYSCTPNCQPS 132
>gi|86748911|ref|YP_485407.1| hypothetical protein RPB_1788 [Rhodopseudomonas palustris HaA2]
gi|86571939|gb|ABD06496.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
Length = 164
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
T+ + I ++V Q+ +++ ++VG+ I DV A++ VV+TGK G
Sbjct: 23 TSLSVASAGTEDTISVSVDQAKLIRLPQNISTLVVGNPLIADV-AMQPGGMVVVTGKGYG 81
Query: 82 STNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
+TN+I + ++ D I V VY SCTP C
Sbjct: 82 ATNVIAMDRKGAVIADRLIQVEGPMDKVVTVYRGVDRESYSCTPLCQ 128
>gi|170749896|ref|YP_001756156.1| hypothetical protein Mrad2831_3496 [Methylobacterium radiotolerans
JCM 2831]
gi|170656418|gb|ACB25473.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM
2831]
Length = 164
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 1/127 (0%)
Query: 4 KRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVD 63
+R I + A+ D + + V + +L+ VIVG+ I +
Sbjct: 2 RRTLSIAGRAGLVVLLTGAAAAAGQPDLLPVVTVLVDNAKVLRLPEKTSTVIVGNPIIAE 61
Query: 64 VLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSC 123
V +K +V+TGK+ GSTN+I L + ++ +T I A+ ST+ V LSC
Sbjct: 62 VTP-QKNGVLVLTGKSFGSTNLIALDNGGAMIAETTIRVEASRDSTITVQRGLDRESLSC 120
Query: 124 TPRCLPS 130
TP C PS
Sbjct: 121 TPGCQPS 127
>gi|188581656|ref|YP_001925101.1| hypothetical protein Mpop_2404 [Methylobacterium populi BJ001]
gi|179345154|gb|ACB80566.1| conserved hypothetical protein [Methylobacterium populi BJ001]
Length = 160
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + V + +++ + V+VG+ I D+ L+K VV+TGK+ G+TN+I
Sbjct: 31 DPAPQGAVSVQVDNAKVIRLPEKTQTVVVGNPMIADI-TLQKNGVVVLTGKSFGTTNLIA 89
Query: 88 LGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
L +L ++ I+ A + S + V SCTP C P+
Sbjct: 90 LDGRGAMLAESTISVQAAQASIITVQRGLDRESYSCTPNCQPA 132
>gi|146338128|ref|YP_001203176.1| hypothetical protein BRADO1025 [Bradyrhizobium sp. ORS278]
gi|146190934|emb|CAL74939.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
Length = 145
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
I + V Q+ +++ ++VG+ I DV L+ +V+TGK+ G+TN I + +
Sbjct: 16 IAVNVDQAKLVKLPDRVATLVVGNPMIADV-TLQSGGIIVVTGKSYGATNFIAMDRGGQV 74
Query: 95 LLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
L+D +I V VY SC P C
Sbjct: 75 LIDRQIQVAGPTDRLVTVYRGVDRETYSCMPICQ 108
>gi|91977981|ref|YP_570640.1| hypothetical protein RPD_3516 [Rhodopseudomonas palustris BisB5]
gi|91684437|gb|ABE40739.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
Length = 161
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 1/122 (0%)
Query: 7 REIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLA 66
R ++ V + S + + + V Q+ +++ ++VG+ I DV
Sbjct: 7 RPVRAALVVSSFVIGLMSSAAMAAGEDTVSVNVDQAKLIRLPQNISTLVVGNPLIADV-T 65
Query: 67 LEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPR 126
L+ VV+TGK G+TN+I + ++ D I + V VY SC P
Sbjct: 66 LQPGGMVVVTGKGYGATNVIAMDRKGAVIADRLIQVEGPMDNVVTVYRGVERESYSCMPV 125
Query: 127 CL 128
C
Sbjct: 126 CQ 127
>gi|170740625|ref|YP_001769280.1| hypothetical protein M446_2388 [Methylobacterium sp. 4-46]
gi|168194899|gb|ACA16846.1| conserved hypothetical protein [Methylobacterium sp. 4-46]
Length = 158
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+ + ++V + I++ V+VG+ I DV +L++ V++TGK+ G+TN+I L
Sbjct: 33 DQATVVVSVDNAKIIRLPERTATVVVGNPIIADV-SLQRNGLVILTGKSFGTTNLIALDG 91
Query: 91 NNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
+ +L ++ I+ A S V V SCTP C P+
Sbjct: 92 SGAMLAESFISVQAATTSVVTVQRGLERESYSCTPACQPA 131
>gi|328545283|ref|YP_004305392.1| Possible pilus assembly protein (CpaC) [polymorphum gilvum
SL003B-26A1]
gi|326415025|gb|ADZ72088.1| Possible pilus assembly protein (CpaC) [Polymorphum gilvum
SL003B-26A1]
Length = 157
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 10 KNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEK 69
+ + T + + + V ++ + + + VIVG+ I DV +
Sbjct: 6 RPRFTLSAAVFATLLCGAAAAETEPVAVTVDRAKVFRIEAPADTVIVGNPSIADV-TMHD 64
Query: 70 EKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLP 129
TVV+TGK G+TN+++L ++ ++D I E V V SC+P C P
Sbjct: 65 RFTVVVTGKTFGTTNLVILDKDSQPIIDEVIVVRPPETDVVTVTRNLNRYSYSCSPTCEP 124
Query: 130 S 130
+
Sbjct: 125 T 125
>gi|316933043|ref|YP_004108025.1| hypothetical protein Rpdx1_1675 [Rhodopseudomonas palustris DX-1]
gi|315600757|gb|ADU43292.1| hypothetical protein Rpdx1_1675 [Rhodopseudomonas palustris DX-1]
Length = 162
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 1/113 (0%)
Query: 16 KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
+ S + I + V Q+ +++ ++VG+ I DV L+ VV+
Sbjct: 16 PSLLLGLLSASATAGTEDSISVNVDQAKLIRLPQDIATIVVGNPLIADV-TLQPGGMVVV 74
Query: 76 TGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
TGK G+TN+I + I+ D I V VY SC P C
Sbjct: 75 TGKGYGATNVIAMDRKGAIVADRLIQVEGPSDKVVTVYRGIDRESYSCAPICE 127
>gi|254473697|ref|ZP_05087092.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
gi|211957083|gb|EEA92288.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
Length = 173
Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
T GI T+ D + + Q+ + + + + +I+G+ I DV + T
Sbjct: 27 TAMIAGISATSIAPAYAD----VEVVADQAKVFRLEEPAETIILGNPSIADV-TVHDRLT 81
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
+VITGK+ G+TN++VL ++ +++ I A V + + SC P C
Sbjct: 82 IVITGKSYGTTNLVVLNDASEPVVEELITVTAEMAGYVAIQRNNSRFTYSCNPDC 136
>gi|254293210|ref|YP_003059233.1| hypothetical protein Hbal_0842 [Hirschia baltica ATCC 49814]
gi|254041741|gb|ACT58536.1| hypothetical protein Hbal_0842 [Hirschia baltica ATCC 49814]
Length = 166
Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
T S+ N I + + Q+ +L +IVG+ + V A+ T+++TG +
Sbjct: 53 TMVSEAANPAQENEIDVYIDQTQLLHLGTPMGSIIVGNPDVATV-AVHDNHTLLLTGLSF 111
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQ-STVRVYTPGTLSFLSCTPRCLP 129
G+TN+IVL + +++ T+ V + +C+ +C P
Sbjct: 112 GTTNLIVLDSVGRPIHKSQLMVSERTGSGTLTVARGQETNTYACSNKCRP 161
>gi|296444401|ref|ZP_06886366.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
gi|296258048|gb|EFH05110.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
Length = 155
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 19 IPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK 78
+ + + + + ++ +++ + +I+G+ + DV L+ + +V+TGK
Sbjct: 16 VAVMGATSRSFAEQRALYVDIDRARVVRMPDGAQTIIIGNPLVADVTMLKANRLLVVTGK 75
Query: 79 NLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
+ G+TN+I+L + +++ I V V +C+P C P+
Sbjct: 76 SFGTTNLILLDESGGEVVEQTITVTPASDKLV-VLRGSRRESYACSPDCSPA 126
>gi|254418061|ref|ZP_05031785.1| hypothetical protein BBAL3_371 [Brevundimonas sp. BAL3]
gi|196184238|gb|EDX79214.1| hypothetical protein BBAL3_371 [Brevundimonas sp. BAL3]
Length = 138
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
S + + + +S +Q + VIVG+ +I DV + T+ I GK G T ++ +
Sbjct: 27 SGALNVEIDRSARVQLNGAASSVIVGNPQIADV-TVVDANTLFIVGKGYGVTEVVAVDGV 85
Query: 92 NDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
L EI +VRV+ G + ++C+ C PS
Sbjct: 86 GRTLFQREIVVTGGSTGSVRVWRGGQATEMACSASCAPS 124
>gi|295690803|ref|YP_003594496.1| CpaC-related secretion pathway protein [Caulobacter segnis ATCC
21756]
gi|295432706|gb|ADG11878.1| CpaC-related secretion pathway protein [Caulobacter segnis ATCC
21756]
Length = 132
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
A+Q P + +A GQ++ L + V+VGD ++ DV ++ E+T+V+ GK G
Sbjct: 19 AAAQSRPAA----LPLATGQAISLSLGGAMRDVVVGDPEVADV-SIVNERTLVVLGKRPG 73
Query: 82 STNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
TN++V G L D ++ + V VY T S +C C
Sbjct: 74 VTNLLVFGAGGRALTDRQLIVSEAGGAAVTVYRGVTTSNYACPRECA 120
>gi|323137421|ref|ZP_08072499.1| hypothetical protein Met49242DRAFT_1887 [Methylocystis sp. ATCC
49242]
gi|322397408|gb|EFX99931.1| hypothetical protein Met49242DRAFT_1887 [Methylocystis sp. ATCC
49242]
Length = 180
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 18 GIPTTASQKTPEDNSNR-IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
G+ S T R IR+ + + I++ + +++G+ + DV L + +VIT
Sbjct: 39 GVFGLESMATDASAKERPIRVELDYARIVRIPPGAQTLVIGNPLVADVTMLRNSQLMVIT 98
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
GK+ G+TN+IVL + ++ + E V V SC PRC +
Sbjct: 99 GKSFGTTNLIVLDRTGAQVGESIVTVAPAEDKLV-VQRGMHRESYSCNPRCAKA 151
>gi|221235980|ref|YP_002518417.1| CpaC-like secretion pathway protein [Caulobacter crescentus NA1000]
gi|220965153|gb|ACL96509.1| CpaC-related secretion pathway protein [Caulobacter crescentus
NA1000]
Length = 143
Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
+++ + S + ++ GQ+ + + ++VGD I DV + +T+V+ GK G
Sbjct: 30 SAKTSGAAVSVDLPVSAGQASYVSLAGSVRDIVVGDPSIADVSVVND-RTLVVLGKRPGV 88
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
T+++ G N L D ++ N V VY T S +C +C
Sbjct: 89 TSLLAFGANGRPLADRQVVVSENGGGGVIVYRGATASNYACAAQC 133
>gi|114798749|ref|YP_761695.1| hypothetical protein HNE_3018 [Hyphomonas neptunium ATCC 15444]
gi|114738923|gb|ABI77048.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444]
Length = 147
Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 11 NETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKE 70
V+ + + + ++ + +++ L+ ++VG+ I DV A+ +
Sbjct: 2 KNAVKPALVALASLFLAGTAFAQQLSVEASKTVPLRLTGPAASIVVGNKNIADV-AVHDD 60
Query: 71 KTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
+ + +TGK+ G+TN++V + + E+ AN S V V G C P C
Sbjct: 61 RLIFVTGKSYGTTNLMVFNKAGEEVYSAEVVVTANSSSLVTVNRAGQNQTYDCAPVC 117
>gi|227818617|ref|YP_002822588.1| PilQ-like protein; component of type IV pilus [Sinorhizobium fredii
NGR234]
gi|36958873|gb|AAQ87298.1| CpaC [Sinorhizobium fredii NGR234]
gi|227337616|gb|ACP21835.1| PilQ-like protein; component of type IV pilus [Sinorhizobium fredii
NGR234]
Length = 172
Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
PTTA + T + +R+ V + L +I+G+ I L +KTV++TGK
Sbjct: 39 PTTALEPTRQT-EGVVRVIVDFARPLILARPASTLIIGNPTIAQA-TLSDDKTVILTGKT 96
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLP 129
GSTN+IV+ + + + A + V + SCT RC P
Sbjct: 97 PGSTNLIVMDAAGAEVANIILDVAAAGGRLITVDGGSGRATYSCTERCDP 146
>gi|302381761|ref|YP_003817584.1| CpaC-related secretion pathway protein [Brevundimonas subvibrioides
ATCC 15264]
gi|302192389|gb|ADK99960.1| CpaC-related secretion pathway protein [Brevundimonas subvibrioides
ATCC 15264]
Length = 139
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 1/105 (0%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+ + + + +S + VIVG+ I DV + T+ +TGK G T +
Sbjct: 24 AAGMAQAQSLNVGIDRSARVALRGSAASVIVGNPAIADV-TVVDANTLFVTGKGYGVTEV 82
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
I + + E+ +VRV+ + L+C C S
Sbjct: 83 IAVDGLGRTIYQGEVIVSGGSTGSVRVWRGARATELACAASCSAS 127
>gi|167648156|ref|YP_001685819.1| hypothetical protein Caul_4197 [Caulobacter sp. K31]
gi|167350586|gb|ABZ73321.1| conserved hypothetical protein [Caulobacter sp. K31]
Length = 131
Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 19 IPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK 78
+ A+ + ++ + ++ GQ+ + + V+VG+ + DV +L E+T+VI GK
Sbjct: 12 LSLGATAAGAQSLASPLSVSAGQAARISLSAPVRDVVVGNPAVADV-SLINERTLVILGK 70
Query: 79 NLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSSPPV 134
G+T ++ L D ++ TV V S +C RC + PV
Sbjct: 71 KAGATTVMAFDARGHALADRQVVVSDIPDGTVVVQRGVVASTYACGDRCSQLAAPV 126
>gi|83859353|ref|ZP_00952874.1| hypothetical protein OA2633_13150 [Oceanicaulis alexandrii
HTCC2633]
gi|83852800|gb|EAP90653.1| hypothetical protein OA2633_13150 [Oceanicaulis alexandrii
HTCC2633]
Length = 146
Score = 94.8 bits (234), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 37 IAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILL 96
+ Q+ +++ VIVG+ I D + L +T+ +TGK G TN+IVL +L
Sbjct: 26 VTADQAGLIRLPGDASGVIVGNPGIADAM-LYDSRTLFVTGKVFGRTNLIVLDEAGRVLY 84
Query: 97 DTEIATFANEQSTVRVYTPGTL-SFLSCTPRCL 128
+++ + TV+V+ + C P C
Sbjct: 85 TSDLVVTQPDSQTVQVFRSKSRPETFVCAPTCQ 117
>gi|110632963|ref|YP_673171.1| hypothetical protein Meso_0606 [Mesorhizobium sp. BNC1]
gi|110283947|gb|ABG62006.1| conserved hypothetical protein [Chelativorans sp. BNC1]
Length = 167
Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
Q + + +R+ + + +L D +IVG+ I +L ++T+++TG+ G+TN
Sbjct: 32 QTVAYERAGAVRLTIDFAELLVLDEPASTIIVGNSAIA-AASLTDDRTLILTGRTAGATN 90
Query: 85 IIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLP 129
+IVL + + + + A + V+ + +C RC P
Sbjct: 91 LIVLDAEGEEIANLVLEVVAAGNHLITVHQGQSRRTFACARRCEP 135
>gi|114568966|ref|YP_755646.1| hypothetical protein Mmar10_0415 [Maricaulis maris MCS10]
gi|114339428|gb|ABI64708.1| conserved hypothetical protein [Maricaulis maris MCS10]
Length = 152
Score = 93.6 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 15 RKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVV 74
R T A ++ + + V + +++ ++VG+ I D L + +T+V
Sbjct: 4 RIATAFTLAIVCVAPAAAHDLAVPVEHAEVIRLPAEASAIVVGNPSIADAL-VHDGRTLV 62
Query: 75 ITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLP 129
+TG+ G TN+I L ++ + +I + V ++ S LSC C
Sbjct: 63 VTGRLQGRTNVIALDRVGRVIYERDIVVSNPVEGQVALFRGPNQSTLSCGAVCDE 117
>gi|307318076|ref|ZP_07597512.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|306896117|gb|EFN26867.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
Length = 170
Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 1/121 (0%)
Query: 9 IKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
++ ++ Q+ R+ V + + VI+G+ I +L
Sbjct: 18 VRPAAADEQKTAIIPFQQRSTGAEGVERLVVDFAKTVALPRPASTVIIGNTGIAQA-SLS 76
Query: 69 KEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
++TV++TGK GSTN+IV+ + + + + A+ V V+ + +C RC
Sbjct: 77 DDRTVILTGKTPGSTNLIVIDSDGAEVANLVLDVVASSGRLVTVHQGARRATFTCARRCD 136
Query: 129 P 129
P
Sbjct: 137 P 137
>gi|329891000|ref|ZP_08269343.1| pilQ [Brevundimonas diminuta ATCC 11568]
gi|328846301|gb|EGF95865.1| pilQ [Brevundimonas diminuta ATCC 11568]
Length = 129
Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Query: 13 TVRKKGIPTTASQKTPEDNSNR-IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK 71
G+ P R + + + Q+ +Q VIV + +I DV + +
Sbjct: 4 ASLLTGLAALLVLTAPAVAQERPLDVKLDQATRVQLRAPAGSVIVANPRIADV-TVTDAR 62
Query: 72 TVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTL 118
T+ ITGK+ G T II + L ++A E +VRV+ G
Sbjct: 63 TLFITGKSYGLTEIIAVDALGRPLFQRQVAVSPGETGSVRVWRGGEA 109
>gi|307304369|ref|ZP_07584120.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
gi|306902571|gb|EFN33165.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
Length = 170
Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 1/121 (0%)
Query: 9 IKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
++ ++ Q+ R+ V + + VI+G+ I +L
Sbjct: 18 VRPAAADEQKTAIIPVQQRSTGAEGVERLVVDFAKTVALPRPASTVIIGNTGIAQA-SLS 76
Query: 69 KEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
++TV++TGK GSTN+IV+ + + + + A+ V V+ + +C RC
Sbjct: 77 DDRTVILTGKTPGSTNLIVIDSDGAEVANLVLDVVASSGRLVTVHQGARRATFTCARRCD 136
Query: 129 P 129
P
Sbjct: 137 P 137
>gi|16263312|ref|NP_436105.1| hypothetical protein SMa1580 [Sinorhizobium meliloti 1021]
gi|14523991|gb|AAK65517.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
Length = 170
Score = 90.9 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 1/121 (0%)
Query: 9 IKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
++ ++ Q+ R+ V + + VI+G+ I +L
Sbjct: 18 VRPAAADEQKTAIIPVQQRSTGAKGVERLVVDFAKTVALPRPASTVIIGNTGIAQA-SLS 76
Query: 69 KEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
++TV++TGK GSTN+IV+ + + + + A+ V V+ + +C RC
Sbjct: 77 DDRTVILTGKTPGSTNLIVIDSDGAEVANLVLDVVASSGRLVTVHQGARRATFTCARRCD 136
Query: 129 P 129
P
Sbjct: 137 P 137
>gi|150377244|ref|YP_001313839.1| hypothetical protein Smed_5129 [Sinorhizobium medicae WSM419]
gi|150031791|gb|ABR63906.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
Length = 170
Score = 90.1 bits (222), Expect = 8e-17, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
T ++ P Q+ R+ V + + VI+G+ I +L ++T
Sbjct: 22 TADEQKSPVVPVQQKSVGADGVERLVVDFAKTVTLPRPASTVIIGNTGIAQA-SLSDDRT 80
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLP 129
V++TGK GSTN+IV+ + + + + A V V+ + +C RC P
Sbjct: 81 VILTGKTPGSTNLIVIDRDGAEVANLILDVVAGSGRLVTVHQGLRRATFTCGRRCDP 137
>gi|144897438|emb|CAM74302.1| conserved hypothetical protein, secreted [Magnetospirillum
gryphiswaldense MSR-1]
Length = 138
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
++ + + GQS + QV++GD K+ DV +++ + + GK GST++
Sbjct: 15 AVSSARADTLELGAGQSRRVDAGRGVAQVVIGDPKVADV-SVDSAGRIQLFGKRAGSTSL 73
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF--------LSCTPRC 127
VLG N +LLD + A + TV V +C C
Sbjct: 74 TVLGRNGAVLLDHTVVVRAGGEGTVTVTYGAGKDVKPGGLTVIHACGQGC 123
>gi|315497470|ref|YP_004086274.1| hypothetical protein Astex_0428 [Asticcacaulis excentricus CB 48]
gi|315415482|gb|ADU12123.1| hypothetical protein Astex_0428 [Asticcacaulis excentricus CB 48]
Length = 141
Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 1/107 (0%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
T + +++I + S + VIVG+ ++ DV + +T+ I G+
Sbjct: 14 TALLSAGAAEAASKIVVEKNHSTRVVLPASAGSVIVGNPEVADV-TVVDSRTIYIMGRGF 72
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRC 127
G +++ V + D ++ + V VY S + C+ C
Sbjct: 73 GRSSVSVTDSAGRNIFDADVMVGTPVEGGVTVYKGLKPSTMICSRTC 119
>gi|329847248|ref|ZP_08262276.1| outer membrane channel protein [Asticcacaulis biprosthecum C19]
gi|328842311|gb|EGF91880.1| outer membrane channel protein [Asticcacaulis biprosthecum C19]
Length = 158
Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 1/108 (0%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
P + + +L + V+VG+ I DV + +T+ I GK GS+
Sbjct: 18 AAVPALAGQPVTVEKNHTLRVTLVAPAGTVVVGNPDIADV-TVVDSRTLYIVGKGFGSSA 76
Query: 85 IIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSSP 132
+ V G + L D E+ A ++ + VY S + CT C+ P
Sbjct: 77 VNVAGRDGRSLFDGEVTVTAPKRGAITVYKGLKPSLMVCTNVCISEEP 124
>gi|220923688|ref|YP_002498990.1| hypothetical protein Mnod_3781 [Methylobacterium nodulans ORS 2060]
gi|219948295|gb|ACL58687.1| hypothetical protein Mnod_3781 [Methylobacterium nodulans ORS 2060]
Length = 169
Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 17 KGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
+ + ++ + + VG S IL+ + +GD I D T+++T
Sbjct: 12 AAVALASLLPAMSQAADTLDLTVGHSQILRPGKAVGTIAIGDPDIADATT-AAGGTILVT 70
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFANEQS---TVRVYTPGTLSFLSCTPR--CLPSS 131
GK +G+TNII L +L + + ++ +V V G SC P C P+
Sbjct: 71 GKKIGTTNIIALDETGSEVLASTLRVVPIDRRPKYSVDVIKGGQRIEYSCGPELHCAPTK 130
>gi|23016187|ref|ZP_00055946.1| COG0304: 3-oxoacyl-(acyl-carrier-protein) synthase
[Magnetospirillum magnetotacticum MS-1]
Length = 142
Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
+ S + + +G +++L + V+VG+ I DV +++ +V + GK G+T
Sbjct: 15 AAPQAAQASEALELPLGGAIVLPMRGGVRTVVVGNPAIADV-SVDGPGSVTVFGKGPGAT 73
Query: 84 NIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLS 119
+++ L +L + ++ A ++V + +
Sbjct: 74 SLVALDAGGGVLAERQVVVLAGGANSVTLRYGTGKT 109
>gi|304320642|ref|YP_003854285.1| hypothetical protein PB2503_05347 [Parvularcula bermudensis
HTCC2503]
gi|303299544|gb|ADM09143.1| hypothetical protein PB2503_05347 [Parvularcula bermudensis
HTCC2503]
Length = 178
Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 40/108 (37%), Gaps = 1/108 (0%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
A+ P + + + + + + ++VG+ I DV + + +++ GK
Sbjct: 10 IAATALAPTAQAGEMWLTLNDARFHETAKPISSIVVGNPAIADV-TVRTKTNIILFGKMP 68
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
G+T I + +++ + + V + SCT C
Sbjct: 69 GATTITLFDARGEVIDRLALKVRNASNNVVTLQAGENRYTFSCTTVCE 116
>gi|114799376|ref|YP_761691.1| pilus assembly protein CpaC [Hyphomonas neptunium ATCC 15444]
gi|114739550|gb|ABI77675.1| pilus assembly protein CpaC [Hyphomonas neptunium ATCC 15444]
Length = 535
Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 14 VRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTV 73
G+ T+ ++ + S R+ + V +S+I+ + V++ + +I D ++ + +
Sbjct: 25 TIPNGMGTSITKPGDQAVSRRVTLGVDKSMIVDLEAPAADVVISNPEIADA-VVQTAQRI 83
Query: 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ G G TN ++ + LLD I +
Sbjct: 84 IFRGIKFGQTNALIFDRAGNTLLDLNIMVETD 115
>gi|220923702|ref|YP_002499004.1| hypothetical protein Mnod_3797 [Methylobacterium nodulans ORS 2060]
gi|219948309|gb|ACL58701.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
Length = 151
Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
T ++ + + GQ I++ + V+VGD I DV + E T+V+T K G T+++
Sbjct: 14 TSASAADSLALRPGQVEIVKTSRGARTVVVGDPDIADV-TVANESTIVVTAKENGVTDLV 72
Query: 87 VLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLS-CTP-RCLP 129
+L + L ++ + E TVRVY + + CT C+P
Sbjct: 73 LLDESGREFLRKQLQIGSPEL-TVRVYRTARETTEAVCTASSCMP 116
>gi|167589424|ref|ZP_02381812.1| type II and III secretion system protein [Burkholderia ubonensis
Bu]
Length = 460
Score = 71.6 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A + + D + +A G+ +L + V D I D+ + +TV + GK G+
Sbjct: 24 AQRASVPDAGAPLTLAAGKGDLLSLPEPAATMFVADPSIADIQ-VPSPRTVFVFGKKAGT 82
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTVRV 112
T +I LG N+ +L + A+ S RV
Sbjct: 83 TTLIALGANHRPILRRTVIVQADTPSLQRV 112
>gi|170703887|ref|ZP_02894570.1| type II and III secretion system protein [Burkholderia ambifaria
IOP40-10]
gi|170131202|gb|EDS99846.1| type II and III secretion system protein [Burkholderia ambifaria
IOP40-10]
Length = 460
Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A + D + IA G+ +L + V D I D+ + +TV + GK G+
Sbjct: 24 AQRAHAADAGAPLSIATGKGEMLSLSEPATAMFVADPSIADIQ-VPSPRTVFVFGKKAGT 82
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTVRV 112
T +I LG N+ +L + + S V
Sbjct: 83 TTLIALGANHRPILRRTVIVQVDTASLQTV 112
>gi|172062959|ref|YP_001810610.1| type II and III secretion system protein [Burkholderia ambifaria
MC40-6]
gi|171995476|gb|ACB66394.1| type II and III secretion system protein [Burkholderia ambifaria
MC40-6]
Length = 460
Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A + D + IA G+ +L + V D I D+ + +TV + GK G+
Sbjct: 24 AQRAHAADAGAPLSIATGKGEMLSLSEPATAMFVADPSIADIQ-VPSPRTVFVFGKKAGT 82
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTVRV 112
T +I LG N+ +L + + S V
Sbjct: 83 TTLIALGANHRPILRRTVIVQVDTASLQTV 112
>gi|114764946|ref|ZP_01444119.1| bacterial type II/III secretion system protein [Pelagibaca
bermudensis HTCC2601]
gi|114542658|gb|EAU45682.1| bacterial type II/III secretion system protein [Roseovarius sp.
HTCC2601]
Length = 471
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + + + ++++++ D ++ + + I D+ +L +T+ + GK G+T + +L N
Sbjct: 38 ESVLSVPMNRAVVVESDRPFAELSIANPAIADISSLSD-RTIYVLGKTPGTTTLTILDAN 96
Query: 92 NDILLDTEIATFANEQSTVRVYTPGTLSFLSCTP 125
++ + ++ A+ V + L P
Sbjct: 97 GRLITNVDVRVAAD----VTEFKERLRQILPNEP 126
>gi|197106459|ref|YP_002131836.1| pilus assembly protein CpaC [Phenylobacterium zucineum HLK1]
gi|196479879|gb|ACG79407.1| pilus assembly protein CpaC [Phenylobacterium zucineum HLK1]
Length = 484
Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 13 TVRKKGIPTTASQKTPEDN------SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLA 66
G T A Q S+ + + G+ +++ D V + D KI DV
Sbjct: 9 AALSVGAGTLAPQSALAAAAVVAGPSSELAVEAGKGRLIRLDRPAATVFIADPKIADVQ- 67
Query: 67 LEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQ 107
++ V + GK G+T++ L ++ D + +
Sbjct: 68 VKSPTLVYVLGKAPGATSLFALDAGERMIADLAVNVGIDTA 108
>gi|78062906|ref|YP_372814.1| type II and III secretion system protein [Burkholderia sp. 383]
gi|77970791|gb|ABB12170.1| type II and III secretion system protein [Burkholderia sp. 383]
Length = 460
Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
A D + IA G+ +L + V D I D+ + +TV + GK
Sbjct: 21 SAFAQGARAPDAGAALSIATGKGELLSLPEPATAMFVADPAIADIQ-VPSPRTVFVFGKK 79
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQS 108
G+T +I LG N+ +L + + S
Sbjct: 80 AGTTTLIALGANHRPILRKTVIVQVDTAS 108
>gi|260426909|ref|ZP_05780888.1| type II and III secretion system protein [Citreicella sp. SE45]
gi|260421401|gb|EEX14652.1| type II and III secretion system protein [Citreicella sp. SE45]
Length = 473
Score = 67.0 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + + + ++++++ D ++ + + I D+ +L E+T+ + GK G+T + +L N
Sbjct: 38 ESVLNVPMNRAVVVESDQPFAELSIANPAIADISSL-SERTIYVLGKTPGTTTLTILDGN 96
Query: 92 NDILLDTEIATFANEQSTVRVYTPGTLSFL 121
++ + ++ A+ V + L
Sbjct: 97 GRLITNVDVRVAAD----VTEFKERLRQIL 122
>gi|163738370|ref|ZP_02145785.1| bacterial type II/III secretion system protein [Phaeobacter
gallaeciensis BS107]
gi|161388291|gb|EDQ12645.1| bacterial type II/III secretion system protein [Phaeobacter
gallaeciensis BS107]
Length = 484
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + + ++++++ DV ++ + + I D+ +L +T+ + GK+ G T + +L + +
Sbjct: 57 LEVPMNRAVVVESDVPFSELSIANPSIADISSLSD-RTIYVLGKSPGLTTLTLLDASGRL 115
Query: 95 LLDTEIATFAN 105
+ + ++ A+
Sbjct: 116 ITNVDVRVAAD 126
>gi|163742213|ref|ZP_02149601.1| bacterial type II/III secretion system protein [Phaeobacter
gallaeciensis 2.10]
gi|161384543|gb|EDQ08924.1| bacterial type II/III secretion system protein [Phaeobacter
gallaeciensis 2.10]
Length = 484
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + + ++++++ DV ++ + + I D+ +L +T+ + GK+ G T + +L + +
Sbjct: 57 LEVPMNRAVVVESDVPFSELSIANPSIADISSLSD-RTIYVLGKSPGLTTLTLLDASGRL 115
Query: 95 LLDTEIATFAN 105
+ + ++ A+
Sbjct: 116 ITNVDVRVAAD 126
>gi|171320618|ref|ZP_02909638.1| type II and III secretion system protein [Burkholderia ambifaria
MEX-5]
gi|171094131|gb|EDT39218.1| type II and III secretion system protein [Burkholderia ambifaria
MEX-5]
Length = 460
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A + D + IA G+ +L + V D I D+ + +TV + GK G+
Sbjct: 24 AQRAHAADAGAALSIATGKGEMLSLSEPATAMFVADPSIADIQ-VPSPRTVFVFGKKAGT 82
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTVRV 112
T +I LG N+ +L + + S V
Sbjct: 83 TTLIALGANHRPILRRTVIVQVDTASLQTV 112
>gi|16520026|ref|NP_444146.1| outermembrane protein RhcC2; component of type III secretion
apparatus [Sinorhizobium fredii NGR234]
gi|2495099|sp|P55702|Y4XJ_RHISN RecName: Full=Uncharacterized protein y4xJ
gi|2182718|gb|AAB91933.1| outermembrane protein RhcC2; component of type III secretion
apparatus [Sinorhizobium fredii NGR234]
Length = 423
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
+ P + + ++ + + V D I D A +T+ + GK G T
Sbjct: 2 PRAAPNSINATLNLSSSLGKTVHLPAPAATIFVADPTIADYQA-PSNRTIFVFGKKFGRT 60
Query: 84 NIIVLGHNNDILLDTEIATFAN 105
++ L N + L + +
Sbjct: 61 SLFALDENGEALAELHVVVTQP 82
>gi|237800794|ref|ZP_04589255.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331023652|gb|EGI03709.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 432
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
Q + I +A+G+ +L F V+V + I D+ + + + GK G T+
Sbjct: 21 QTIAKGAEGTIDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVV-SPGVIYVFGKTAGQTS 79
Query: 85 IIVLGHNNDILLDTEIATFANEQSTVR 111
+I L +A + + R
Sbjct: 80 LIALDSEGRETAALSLAVSSGTAAVTR 106
>gi|254466441|ref|ZP_05079852.1| bacterial type II/III secretion system protein [Rhodobacterales
bacterium Y4I]
gi|206687349|gb|EDZ47831.1| bacterial type II/III secretion system protein [Rhodobacterales
bacterium Y4I]
Length = 468
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 12/90 (13%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + + + ++++++ ++ ++ + + I D+ +L +T+ + GK+ G T + +L +
Sbjct: 38 AATLDVPMNRAVVVESEIPFAELSIANPSIADISSLSD-RTIYVLGKSPGLTTLTLLDGS 96
Query: 92 NDILLDTEIATFANEQSTVRVYTPGTLSFL 121
++ + ++ A+ V + L
Sbjct: 97 GRLITNVDVRVAAD----VTEFKQRLRQIL 122
>gi|19749313|gb|AAL98683.1| Y4xJ [Sinorhizobium fredii]
Length = 411
Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 1/87 (1%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
+ P + + ++ + + V D I D A +T+ + GK G
Sbjct: 12 AVPRAAPNSINATLNLSSSLGKTVHLPAPAATIFVADPPIADYQA-PSNRTIFVFGKKFG 70
Query: 82 STNIIVLGHNNDILLDTEIATFANEQS 108
T++ L N + L + +
Sbjct: 71 RTSLFALDENGEALAELHVVVTQPIGD 97
>gi|254463467|ref|ZP_05076883.1| bacterial type II/III secretion system protein [Rhodobacterales
bacterium HTCC2083]
gi|206680056|gb|EDZ44543.1| bacterial type II/III secretion system protein [Rhodobacteraceae
bacterium HTCC2083]
Length = 474
Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+S+ + I + ++++++ DV ++ + + I D+ L +TV + GK+ G T + +L
Sbjct: 37 SSSTLPIPMNRAVVVESDVPFAELSIANPSIADISTLSD-RTVYVLGKSPGLTTLTLLDD 95
Query: 91 NNDILLDTEIATFAN 105
++ + ++ A+
Sbjct: 96 AGRLITNVDVRVSAD 110
>gi|149915642|ref|ZP_01904168.1| bacterial type II/III secretion system protein [Roseobacter sp.
AzwK-3b]
gi|149810534|gb|EDM70377.1| bacterial type II/III secretion system protein [Roseobacter sp.
AzwK-3b]
Length = 467
Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
Q + + + + ++++++ DV ++ + + I D L +T+ + GK G T
Sbjct: 31 QVVRNGAARDLNVTMNRAVVVESDVPFAELSIANPSIADFSTLSD-RTIYVLGKAPGRTT 89
Query: 85 IIVLGHNNDILLDTEIATFAN 105
+ +L + ++ + EI +
Sbjct: 90 LTLLDDSGRLITNVEIHVSTD 110
>gi|99082186|ref|YP_614340.1| type II and III secretion system protein [Ruegeria sp. TM1040]
gi|99038466|gb|ABF65078.1| Hypothetical 443 kDa protein y4xJ [Ruegeria sp. TM1040]
Length = 497
Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + + + ++++++ DV ++ + + I D+ +L +T+ + GK+ G T + +L +
Sbjct: 66 NAVLDVPMNRAVVVEADVPFAELSIANPSIADISSLSD-RTIYVLGKSPGLTTLTLLDGS 124
Query: 92 NDILLDTEIATFAN 105
++ + ++ A+
Sbjct: 125 GGLITNVDVRVAAD 138
>gi|126729098|ref|ZP_01744912.1| bacterial type II/III secretion system protein [Sagittula stellata
E-37]
gi|126710088|gb|EBA09140.1| bacterial type II/III secretion system protein [Sagittula stellata
E-37]
Length = 473
Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 14/95 (14%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 18 GIPTTASQKTPED-------NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKE 70
GI T + + + + + + ++++++ D ++ + + I D+ +L
Sbjct: 17 GIATMSPPAHADSIRVVRTGTESVLSVPMNRAVVVESDTPFAELSIANPSIADISSLSD- 75
Query: 71 KTVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+T+ + GK G+T + +L ++ + ++ A+
Sbjct: 76 RTIYVLGKQPGTTTLTILDPQGQLITNVDVRVAAD 110
>gi|257487975|ref|ZP_05642016.1| type III secretion component, putative [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 243
Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
+ ++ + + +A+G+ +L F V+V + I D+ + + + GK
Sbjct: 14 GSFAENIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVV-SPGVIYVFGKAA 72
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQSTVR 111
G T++I L +A ++ + R
Sbjct: 73 GQTSLIALDSEGRETAALSLAVSSSTAAVTR 103
>gi|330963695|gb|EGH63955.1| type III secretion component [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 195
Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
++ + + +A+G+ +L F V+V + I D+ + + + GK
Sbjct: 7 GACAETIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVV-SPGVIYVFGKAA 65
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQSTVR 111
G T++I L +A + + R
Sbjct: 66 GQTSLIALDSEGRETAALSLAVSSGTAAVTR 96
>gi|115358171|ref|YP_775309.1| type II and III secretion system protein [Burkholderia ambifaria
AMMD]
gi|115283459|gb|ABI88975.1| type II and III secretion system protein [Burkholderia ambifaria
AMMD]
Length = 460
Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A + + + IA G+ +L + V D I D+ + +TV + GK G+
Sbjct: 24 AQRAHAVEAGATLSIATGKGEMLSLSEPATAMFVADPSIADIQ-VPSPRTVFVFGKKAGT 82
Query: 83 TNIIVLGHNNDILLDTEIATFANEQS 108
T +I LG N+ +L + + S
Sbjct: 83 TTLIALGANHRPILRKTVIVQVDTVS 108
>gi|71733713|ref|YP_274717.1| type III secretion component [Pseudomonas syringae pv. phaseolicola
1448A]
gi|71554266|gb|AAZ33477.1| type III secretion component, putative [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 437
Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
+ ++ + + +A+G+ +L F V+V + I D+ + + + GK
Sbjct: 22 GSFAENIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVV-SPGVIYVFGKAA 80
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQSTVR 111
G T++I L + +A + + R
Sbjct: 81 GQTSLIALDSDGRETAALSLAVSSGTAAVTR 111
>gi|86137993|ref|ZP_01056569.1| bacterial type II/III secretion system protein [Roseobacter sp.
MED193]
gi|85825585|gb|EAQ45784.1| bacterial type II/III secretion system protein [Roseobacter sp.
MED193]
Length = 459
Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 11/72 (15%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+ + + ++++++ D ++ + + I D+ +L +T+ + GK+ G T + +L +
Sbjct: 34 TLDVPMNRAVVVESDDPFAELSIANPNIADISSLSD-RTIYVLGKSPGLTTLTLLDASGK 92
Query: 94 ILLDTEIATFAN 105
++ + + A+
Sbjct: 93 LITNVNVRVAAD 104
>gi|330876206|gb|EGH10355.1| type III secretion component [Pseudomonas syringae pv. morsprunorum
str. M302280PT]
Length = 437
Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
++ + + +A+G+ +L F V+V + I D+ + + + GK
Sbjct: 22 GACAETIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVV-SPGVIYVFGKAA 80
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQSTVR 111
G T++I L +A + + R
Sbjct: 81 GQTSLIALDSEGRETAALSLAVSSGTAAVTR 111
>gi|12620550|gb|AAG60826.1|AF322012_131 RhcC2 [Bradyrhizobium japonicum]
Length = 484
Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 1/82 (1%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
+ P + + I Q + + V D I D A T+ + GK G T
Sbjct: 56 PRAAPGSTTGTLNITSSQGKTVHLSAPAATIFVADPAIADYQA-PSSSTIFVFGKKSGRT 114
Query: 84 NIIVLGHNNDILLDTEIATFAN 105
++ L N + L + I
Sbjct: 115 SLFALNENGEALAELRIVVTQP 136
>gi|289624387|ref|ZP_06457341.1| type III secretion component, putative [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289646614|ref|ZP_06477957.1| type III secretion component, putative [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330868629|gb|EGH03338.1| type III secretion component [Pseudomonas syringae pv. aesculi str.
0893_23]
Length = 429
Score = 63.9 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
+ ++ + + +A+G+ +L F V+V + I D+ + + + GK
Sbjct: 14 VSFAENIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVV-SPGVIYVFGKAA 72
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQSTVR 111
G T++I L +A + + R
Sbjct: 73 GQTSLIALDSEGRETAALSLAVSSGTAAVTR 103
>gi|89068017|ref|ZP_01155434.1| Outer membrane general secretion pathway protein, Secretin
[Oceanicola granulosus HTCC2516]
gi|89046256|gb|EAR52313.1| Outer membrane general secretion pathway protein, Secretin
[Oceanicola granulosus HTCC2516]
Length = 482
Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S +++ + ++++++ D +V + + I D+ L +T+ + GK G T + +LG
Sbjct: 36 APSRALQVPMNRAVVVESDTPFTEVSIANPGIADISTLSD-RTLYVLGKEPGRTTLTLLG 94
Query: 90 HNNDILLDTEIATFAN 105
+ ++ + E+ +
Sbjct: 95 ADGRLITNVEVQVTPD 110
>gi|254501806|ref|ZP_05113957.1| Putative phospholipid-binding domain family [Labrenzia alexandrii
DFL-11]
gi|222437877|gb|EEE44556.1| Putative phospholipid-binding domain family [Labrenzia alexandrii
DFL-11]
Length = 483
Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 15/106 (14%), Positives = 40/106 (37%), Gaps = 4/106 (3%)
Query: 11 NETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKE 70
++ I A ++ + + + +G+S+++ V+V + +I D L
Sbjct: 42 SQEAFPSQIHVAAGERATDR---ILNVGIGRSVVINLAEDAADVLVSNPQIADA-VLRTP 97
Query: 71 KTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPG 116
+ + + G G +++ G + L +I + R+
Sbjct: 98 RRIFVLGNTAGQARLVLFGRSGRELASFDIRVEKDTSDITRIIRRL 143
>gi|167624205|ref|YP_001674499.1| type II and III secretion system protein [Shewanella halifaxensis
HAW-EB4]
gi|167354227|gb|ABZ76840.1| type II and III secretion system protein [Shewanella halifaxensis
HAW-EB4]
Length = 478
Score = 63.6 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A TP ++ RI + +S +L + +V VG+ I D+ L ++ + I GK LGS
Sbjct: 23 AGGPTPGARNDIQRIPIFKSRVLMLNGPIHRVSVGNPSIADIKLLPNDE-LYILGKQLGS 81
Query: 83 TNIIVLGHNNDI--LLDTEIA 101
TNI++ N + ++D E+
Sbjct: 82 TNIMIWDKNEQLARIMDIEVT 102
>gi|259417373|ref|ZP_05741292.1| type II and III secretion system protein [Silicibacter sp.
TrichCH4B]
gi|259346279|gb|EEW58093.1| type II and III secretion system protein [Silicibacter sp.
TrichCH4B]
Length = 442
Score = 63.6 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + + + ++++++ DV ++ + + I D+ +L +T+ + GK+ G T + +L +
Sbjct: 13 NAVLDVPMNRAVVVEADVPFAELSIANPGIADISSLSD-RTIYVLGKSPGMTTLTLLDGS 71
Query: 92 NDILLDTEIATFAN 105
++ + ++ A+
Sbjct: 72 GGLITNVDVRVAAD 85
>gi|126737254|ref|ZP_01752989.1| bacterial type II/III secretion system protein [Roseobacter sp.
SK209-2-6]
gi|126721839|gb|EBA18542.1| bacterial type II/III secretion system protein [Roseobacter sp.
SK209-2-6]
Length = 446
Score = 63.6 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 11/72 (15%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+ + + ++++++ D ++ + + I D+ +L +T+ + GK+ G T + +L
Sbjct: 24 TLDVPMNRAIVVESDAPFAELSIANPNIADISSLSD-RTIYVLGKSPGLTTLTLLDGAGK 82
Query: 94 ILLDTEIATFAN 105
++ + + A+
Sbjct: 83 LITNVNVRVAAD 94
>gi|27376953|ref|NP_768482.1| RhcC2 protein [Bradyrhizobium japonicum USDA 110]
gi|27350095|dbj|BAC47107.1| RhcC2 protein [Bradyrhizobium japonicum USDA 110]
Length = 430
Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 1/82 (1%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
+ P + + I Q + + V D I D A T+ + GK G T
Sbjct: 2 PRAAPGSTTGTLNITSSQGKTVHLSAPAATIFVADPAIADYQA-PSSSTIFVFGKKSGRT 60
Query: 84 NIIVLGHNNDILLDTEIATFAN 105
++ L N + L + I
Sbjct: 61 SLFALNENGEALAELRIVVTQP 82
>gi|302343419|ref|YP_003807948.1| type II and III secretion system protein [Desulfarculus baarsii DSM
2075]
gi|301640032|gb|ADK85354.1| type II and III secretion system protein [Desulfarculus baarsii DSM
2075]
Length = 466
Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
+ T AS + E + R+ +A G S ++ K+V V D+ + DVL + + + + G
Sbjct: 17 AVATPASARA-EARTGRLEVAAGHSRLVDLPAPLKRVSVADETVADVLVI-NPRQIYVNG 74
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ G+TNI V ++ + +
Sbjct: 75 RKPGNTNITVWDRAERVIAAYAVGVGRD 102
>gi|146276361|ref|YP_001166520.1| type II and III secretion system protein [Rhodobacter sphaeroides
ATCC 17025]
gi|145554602|gb|ABP69215.1| type II and III secretion system protein [Rhodobacter sphaeroides
ATCC 17025]
Length = 461
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 12/90 (13%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 16 KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
+ + S + + + ++++++ D ++ + + I D+ L E ++ +
Sbjct: 22 PMAVSAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTL-SETSIYV 80
Query: 76 TGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
GK G T + +LG + ++ + ++ +
Sbjct: 81 LGKAPGRTTLTLLGADGRLISNVDVHVTPD 110
>gi|330882763|gb|EGH16912.1| type III secretion component [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 215
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
+ ++ + + +A+G+ +L F V+V + I D+ + + + G+
Sbjct: 14 GSFAENIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVV-SPGVIYVFGQAA 72
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQSTVR 111
G T++I L + +A + + R
Sbjct: 73 GQTSLIALDSDGRETAALSLAVSSGTAAVTR 103
>gi|330953268|gb|EGH53528.1| type III secretion component [Pseudomonas syringae Cit 7]
Length = 438
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
++ + + +A+G+ +L F V+V + I D+ + + + GK
Sbjct: 23 GANAETIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVV-SPGVIYVFGKTA 81
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQSTVR 111
G T++I L +A + + R
Sbjct: 82 GQTSLIALDSEGRETATLSLAVSSGTAAVSR 112
>gi|84501676|ref|ZP_00999848.1| bacterial type II/III secretion system protein [Oceanicola
batsensis HTCC2597]
gi|84390297|gb|EAQ02856.1| bacterial type II/III secretion system protein [Oceanicola
batsensis HTCC2597]
Length = 474
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
++ +R+ +A+ ++++++ DV ++ + + +I D+ +L ++ + GK G T + +L
Sbjct: 36 NSESRLNVAINRAVVVESDVSFAELSIANPQIADISSLSDT-SIYVLGKTPGITTLTLLD 94
Query: 90 HNNDILLDTEIATFAN 105
++ + ++ A+
Sbjct: 95 AEGRLISNVDVVVSAD 110
>gi|83943939|ref|ZP_00956396.1| bacterial type II/III secretion system protein [Sulfitobacter sp.
EE-36]
gi|83954512|ref|ZP_00963223.1| bacterial type II/III secretion system protein [Sulfitobacter sp.
NAS-14.1]
gi|83840796|gb|EAP79967.1| bacterial type II/III secretion system protein [Sulfitobacter sp.
NAS-14.1]
gi|83845186|gb|EAP83066.1| bacterial type II/III secretion system protein [Sulfitobacter sp.
EE-36]
Length = 479
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + + + ++++++ D+ ++ + + I D+ +L +T+ + GK+ G T + +L
Sbjct: 42 NRVLEVPMNRAVVVESDIPFAELSIANPGIADISSLSD-RTIYVLGKSPGLTTLTLLDAA 100
Query: 92 NDILLDTEIATFAN 105
++ + ++ A+
Sbjct: 101 GQLITNVDVRVAAD 114
>gi|320324504|gb|EFW80581.1| type III secretion component, putative [Pseudomonas syringae pv.
glycinea str. B076]
gi|320328376|gb|EFW84379.1| type III secretion component, putative [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 429
Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
+ ++ + + +A+G+ +L F V+V + I D+ + + + G+
Sbjct: 14 GSFAENIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVV-SPGVIYVFGQAA 72
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQSTVR 111
G T++I L + +A + + R
Sbjct: 73 GQTSLIALDSDGRETAALSLAVSSGTAAVTR 103
>gi|90411206|ref|ZP_01219219.1| Flp pilus assembly protein [Photobacterium profundum 3TCK]
gi|90328052|gb|EAS44373.1| Flp pilus assembly protein [Photobacterium profundum 3TCK]
Length = 489
Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ I + +S +++ K++ VG+ I D+L L K + + GK G+TN+I+
Sbjct: 32 ATRTESISVPHNKSRLIEIPGRAKKISVGNPAIADILILRSNK-IYVLGKQFGTTNVIIW 90
Query: 89 GHNNDILLDTEIATFAN 105
+ ++ ++ +
Sbjct: 91 DSKDRLITVLDVEVTHD 107
>gi|330985203|gb|EGH83306.1| type III secretion component [Pseudomonas syringae pv. lachrymans
str. M301315]
Length = 429
Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
+ ++ + + +A+G+ +L F V+V + I D+ + + + GK
Sbjct: 14 GSFAENIAKGAKGTVDLAIGEGRVLHFSAPLDSVMVAEPGIADLQVV-SPGVIYVFGKAA 72
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQSTVR 111
G T++I L +A ++ + R
Sbjct: 73 GQTSLIALDSEGRETAALSLAVSSSTAAVTR 103
>gi|163745846|ref|ZP_02153205.1| bacterial type II/III secretion system protein [Oceanibulbus
indolifex HEL-45]
gi|161380591|gb|EDQ05001.1| bacterial type II/III secretion system protein [Oceanibulbus
indolifex HEL-45]
Length = 478
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/92 (15%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 18 GIPTTASQKT----PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTV 73
+P++A T ++ + + + ++++++ D+ ++ + + I D+ +L +T+
Sbjct: 24 TLPSSAGADTLRVVKRGTNSSLDVPMNRAVVVESDIPFAELSIANPGIADISSLSD-RTI 82
Query: 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ GK+ G T + +L ++ + ++ A+
Sbjct: 83 YVLGKSPGLTTLTLLDAGGQLITNVDVRVAAD 114
>gi|114705456|ref|ZP_01438364.1| exporter protein, cpaC [Fulvimarina pelagi HTCC2506]
gi|114540241|gb|EAU43361.1| exporter protein, cpaC [Fulvimarina pelagi HTCC2506]
Length = 544
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
RI + + +S +L ++V + I D L + + + GK +G TN+IV N
Sbjct: 57 RIELGLDKSKVLVLSADAHDILVANPSIADALT-RDRRHIYLFGKQVGQTNLIVFDQANR 115
Query: 94 ILLDTEIATFANEQS 108
+ +I +
Sbjct: 116 QIASIDIQIERDIAG 130
>gi|254440636|ref|ZP_05054129.1| Putative phospholipid-binding domain family [Octadecabacter
antarcticus 307]
gi|198250714|gb|EDY75029.1| Putative phospholipid-binding domain family [Octadecabacter
antarcticus 307]
Length = 474
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 52/99 (52%), Gaps = 13/99 (13%)
Query: 8 EIKNETVR-KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLA 66
+++ ET+R +G P++A + + + ++++++ DV ++ + + I D+ +
Sbjct: 24 QLQAETLRVMRGAPSSA-----------LNVPMNRAVVVESDVPFTELSIANPSIADISS 72
Query: 67 LEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
L +T+ + GK G T + +LG + ++ + E+ +
Sbjct: 73 LSD-RTIYVLGKEPGRTTLTLLGGDGRLITNVEVHVTPD 110
>gi|220922544|ref|YP_002497846.1| hypothetical protein Mnod_2580 [Methylobacterium nodulans ORS 2060]
gi|219947151|gb|ACL57543.1| hypothetical protein Mnod_2580 [Methylobacterium nodulans ORS 2060]
Length = 217
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
+Q+ + +RI G I V+VG+ +I DV + + + +T K G T
Sbjct: 41 AQEPVNIPKDILRINAGSVEIFAVPEPMSDVLVGESRIADVAIISD-RRIAVTAKAPGRT 99
Query: 84 NIIVLGHNNDILLDTEIATFANE---QSTVRVYTPGTLSFL 121
NII++G N +L ++ F E + +R + ++
Sbjct: 100 NIILMGENRKLLSKLDVLVFKAEDENGNPIRKQSGKQINTY 140
>gi|126725970|ref|ZP_01741812.1| Outer membrane general secretion pathway protein, Secretin
[Rhodobacterales bacterium HTCC2150]
gi|126705174|gb|EBA04265.1| Outer membrane general secretion pathway protein, Secretin
[Rhodobacterales bacterium HTCC2150]
Length = 466
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
SN + + + ++++++ + +V V + I D+ L KT+ + GK G T + +L
Sbjct: 27 SNSLNVPMNRAIVVETETSFGEVSVANPSIADISTLSD-KTIYVLGKAPGRTTLTLLDGT 85
Query: 92 NDILLDTEIATFAN 105
++ + ++ +
Sbjct: 86 GRLISNVDVHVTPD 99
>gi|332560337|ref|ZP_08414659.1| Type II and III secretion system protein precursor [Rhodobacter
sphaeroides WS8N]
gi|332278049|gb|EGJ23364.1| Type II and III secretion system protein precursor [Rhodobacter
sphaeroides WS8N]
Length = 466
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 21 TTASQKT----PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
T A+ +T S + + + ++++++ D ++ + + I D+ L E ++ +
Sbjct: 28 TPAAAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTL-SETSIYVL 86
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFAN 105
GK G T + +LG + ++ + ++ +
Sbjct: 87 GKAPGRTTLTLLGADGRLISNVDVHVTPD 115
>gi|260574616|ref|ZP_05842619.1| type II and III secretion system protein [Rhodobacter sp. SW2]
gi|259023033|gb|EEW26326.1| type II and III secretion system protein [Rhodobacter sp. SW2]
Length = 470
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
T + + + S + + + ++++++ DV ++ + + I D+ L K+
Sbjct: 18 TTALSPVAAQSLRVMEGSASRALEVPLNRAVVVESDVPFAELSIANPGIADISTLSD-KS 76
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ + GK G T + +LG + ++ + E+ +
Sbjct: 77 IYVLGKAPGRTTLTLLGPDGRLISNVEVQVSPD 109
>gi|294676059|ref|YP_003576674.1| type II and III secretion system protein [Rhodobacter capsulatus SB
1003]
gi|294474879|gb|ADE84267.1| type II and III secretion system protein [Rhodobacter capsulatus SB
1003]
Length = 469
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + + ++++++ D ++ + + I DV L KT+ + GK G T + +LG + +
Sbjct: 40 LAVPMNRAVVVESDQPFSELSIANPGIADVTTLSD-KTIYVLGKVPGRTTMTILGADGTL 98
Query: 95 LLDTEIATFAN 105
L + E+ +
Sbjct: 99 LSNVEVQVTPD 109
>gi|298487093|ref|ZP_07005143.1| type II/III secretion system protein [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298158336|gb|EFH99406.1| type II/III secretion system protein [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 437
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
+ ++ + + +A+G+ +L F V+V + I D+ + + + GK
Sbjct: 22 VSFAENIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVV-SPGVIYVFGKAA 80
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQSTVR 111
G T++I LG +A + + R
Sbjct: 81 GQTSLIALGSEGRETAALSLAVSSGTAAVTR 111
>gi|77462453|ref|YP_351957.1| Outer membrane general secretion pathway protein, secretin
[Rhodobacter sphaeroides 2.4.1]
gi|77386871|gb|ABA78056.1| Outer membrane general secretion pathway protein, Secretin
[Rhodobacter sphaeroides 2.4.1]
Length = 461
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 21 TTASQKT----PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
T A+ +T S + + + ++++++ D ++ + + I D+ L E ++ +
Sbjct: 23 TPAAAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTL-SETSIYVL 81
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFAN 105
GK G T + +LG + ++ + ++ +
Sbjct: 82 GKAPGRTTLTLLGADGRLISNVDVHVTPD 110
>gi|254487886|ref|ZP_05101091.1| bacterial type II/III secretion system protein [Roseobacter sp.
GAI101]
gi|214044755|gb|EEB85393.1| bacterial type II/III secretion system protein [Roseobacter sp.
GAI101]
Length = 486
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 10/92 (10%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 14 VRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTV 73
+ + + + + + ++++++ D+ ++ + + I D+ +L +T+
Sbjct: 31 AAPTAVQADTLRVVNRGTNRALEVPMNRAVVVESDIPFAELSIANPGIADISSLSD-RTI 89
Query: 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ GK+ G T + +L ++ + ++ ++
Sbjct: 90 YVLGKSPGLTTLTLLDAAGQLITNVDVRVASD 121
>gi|221638316|ref|YP_002524578.1| Type II and III secretion system protein [Rhodobacter sphaeroides
KD131]
gi|221159097|gb|ACM00077.1| Type II and III secretion system protein precursor [Rhodobacter
sphaeroides KD131]
Length = 461
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 21 TTASQKT----PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
T A+ +T S + + + ++++++ D ++ + + I D+ L E ++ +
Sbjct: 23 TPAAAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTL-SETSIYVL 81
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFAN 105
GK G T + +LG + ++ + ++ +
Sbjct: 82 GKAPGRTTLTLLGADGRLISNVDVHVTPD 110
>gi|54302290|ref|YP_132283.1| Flp pilus assembly protein [Photobacterium profundum SS9]
gi|46915712|emb|CAG22483.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
SS9]
Length = 296
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ I + +S +++ K++ VG+ I D+L L K + + GK G+TN+I+
Sbjct: 32 ATRTESISVPHNKSRLIEIPGRAKKISVGNPAIADILILRSNK-IYVLGKQFGTTNVIIW 90
Query: 89 GHNNDILLDTEIATFAN 105
+ ++ ++ +
Sbjct: 91 DSRDQLITVLDVEVTHD 107
>gi|126461331|ref|YP_001042445.1| type II and III secretion system protein [Rhodobacter sphaeroides
ATCC 17029]
gi|126102995|gb|ABN75673.1| type II and III secretion system protein [Rhodobacter sphaeroides
ATCC 17029]
Length = 461
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 21 TTASQKT----PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
T A+ +T S + + + ++++++ D ++ + + I D+ L E ++ +
Sbjct: 23 TPAAAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTL-SETSIYVL 81
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFAN 105
GK G T + +LG + ++ + ++ +
Sbjct: 82 GKAPGRTTLTLLGADGRLISNVDVHVTPD 110
>gi|46201037|ref|ZP_00207939.1| COG4964: Flp pilus assembly protein, secretin CpaC
[Magnetospirillum magnetotacticum MS-1]
Length = 480
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 14 VRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTV 73
++ G P + T + ++ VG+S+ L ++V++G+ I DV+ + V
Sbjct: 33 AQRAGTPRSLLGATAASAESM-QVPVGKSVDLTLPGAVREVVIGNSDIADVM-VRSPNLV 90
Query: 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
ITG+ +G TN+ ++ ++ ++ + Q+
Sbjct: 91 HITGRAVGQTNVFLVDRAGRVMRRIDLNVSIDSQAV 126
>gi|260461949|ref|ZP_05810194.1| type II and III secretion system protein [Mesorhizobium
opportunistum WSM2075]
gi|259032196|gb|EEW33462.1| type II and III secretion system protein [Mesorhizobium
opportunistum WSM2075]
Length = 505
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 19 IPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK 78
+ ++Q T S R+++ + +S+++ ++V + + D + + + + GK
Sbjct: 28 VEAKSTQVTATTASQRVKLGLNKSVVIDLPSDAYDILVANPSVADAVT-RTARRIYLFGK 86
Query: 79 NLGSTNIIVLGHNNDILLDTEIATFANEQS 108
+G TNI V G N + + ++A +
Sbjct: 87 AVGETNIFVFGPNGEQIASLDLAVERDVAG 116
>gi|126733573|ref|ZP_01749320.1| bacterial type II/III secretion system protein [Roseobacter sp.
CCS2]
gi|126716439|gb|EBA13303.1| bacterial type II/III secretion system protein [Roseobacter sp.
CCS2]
Length = 476
Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
P + S+ + + + ++++++ DV ++ + + I D+ +L +T
Sbjct: 20 AAAPSIAPAETLRVLRGAASSALSVPMSRAVVVESDVPFTELSIANPGIADISSLSD-RT 78
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ + GK G T + +LG N ++ + EI +
Sbjct: 79 IYVLGKEPGRTTLTLLGENGRLITNVEIHVSPD 111
>gi|262275469|ref|ZP_06053279.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Grimontia hollisae CIP 101886]
gi|262220714|gb|EEY72029.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Grimontia hollisae CIP 101886]
Length = 454
Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ I + G + L+F+ + V + D I D ++ K +V+ G+ LG+T +IV
Sbjct: 26 ASAAGVINLGTGDARSLEFNAVIGTVFISDPDIADYQVIDSNK-LVVFGRKLGTTTLIVF 84
Query: 89 GHNNDILLDTEIAT 102
++ L +I
Sbjct: 85 DEDSQTLSHRKIVV 98
>gi|10956078|ref|NP_052165.1| exporter protein [Chlorobium limicola]
gi|1688247|gb|AAB36938.1| exporter protein [Chlorobium limicola]
Length = 461
Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
D + R+ +G+S I +F K+V VGD ++ D + + + + + + GK LGSTN++V
Sbjct: 2 DTPSIYRVPLGESRIYRFAQPIKRVAVGDPQVADYIMMNRSE-IYLLGKKLGSTNLVVWD 60
Query: 90 HNNDILLDTEIATFANEQS 108
++ T + +
Sbjct: 61 QKGNV-TSTPVQVSRGTTA 78
>gi|167836689|ref|ZP_02463572.1| RhcC2 [Burkholderia thailandensis MSMB43]
Length = 460
Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
+ + + +A G +L+ V + D + DV + ++V + GK
Sbjct: 24 VPGAHVHADPVGPVLTVAAGGGEMLKLPEPAGAVFIADPDVADVH-VPTPQSVFVLGKKA 82
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQSTVRV 112
G+T + LG NN +L I A+ + R+
Sbjct: 83 GTTTLFALGSNNRTILRETIVVNADTPTLQRI 114
>gi|167719684|ref|ZP_02402920.1| type II/III secretion system protein [Burkholderia pseudomallei
DM98]
gi|167902788|ref|ZP_02489993.1| type II/III secretion system protein [Burkholderia pseudomallei
NCTC 13177]
Length = 448
Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
G+ D + + G +++ V V D + DV + + V + G
Sbjct: 9 GMAVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVH-VPTPQAVFVLG 67
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRV 112
K G+T + LG NN +L + + S R+
Sbjct: 68 KKAGTTTLFALGANNRTILRETVVVDVDTPSLQRI 102
>gi|319785608|ref|YP_004145084.1| type II and III secretion system protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317171496|gb|ADV15034.1| type II and III secretion system protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 506
Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 19 IPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK 78
+ +Q T + R+++ + +S+++ ++V + + D + + + + GK
Sbjct: 29 VEAKNAQVTASTATQRVKLGLNKSVVIDLPSDAYDILVANPAVADAVT-RTARRIYLFGK 87
Query: 79 NLGSTNIIVLGHNNDILLDTEIATFANEQS 108
+G TNI V G N + ++ ++A +
Sbjct: 88 AVGETNIFVFGPNGEQIVSLDLAVERDVAG 117
>gi|255262444|ref|ZP_05341786.1| outer membrane general secretion pathway protein, Secretin
[Thalassiobium sp. R2A62]
gi|255104779|gb|EET47453.1| outer membrane general secretion pathway protein, Secretin
[Thalassiobium sp. R2A62]
Length = 480
Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
+ + + S+ + + + ++++++ DV ++ + + I D+ L +T
Sbjct: 36 SSVPAAVSAETLRVMRGAPSSALNVPMNRAVVVESDVPFAELSIANPGIADISTLSD-RT 94
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ + GK G T + +LG + ++ + ++ +
Sbjct: 95 IYVLGKLPGRTTLTLLGPDGRLITNVDVHVTPD 127
>gi|84516633|ref|ZP_01003992.1| Outer membrane general secretion pathway protein, Secretin
[Loktanella vestfoldensis SKA53]
gi|84509669|gb|EAQ06127.1| Outer membrane general secretion pathway protein, Secretin
[Loktanella vestfoldensis SKA53]
Length = 476
Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 16/104 (15%), Positives = 45/104 (43%), Gaps = 13/104 (12%)
Query: 14 VRKKGIPTTASQKTPE------------DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKI 61
G+ + + P SN + + + ++++++ DV ++ + + I
Sbjct: 9 AALAGVALSMTAAAPAMAQDSTLRVLRGAASNALDVPMNRAVVVESDVPFTELSIANPGI 68
Query: 62 VDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
D+ +L +T+ + GK G T + +L + ++ + E+ +
Sbjct: 69 ADISSLSD-RTIYVLGKEPGRTTLTLLSADGRLITNVEVHVSPD 111
>gi|328545279|ref|YP_004305388.1| Pilus assembly protein [polymorphum gilvum SL003B-26A1]
gi|326415021|gb|ADZ72084.1| Pilus assembly protein [Polymorphum gilvum SL003B-26A1]
Length = 470
Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 40/99 (40%), Gaps = 4/99 (4%)
Query: 10 KNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEK 69
+ + K + A ++ +R+ +G+S+++ V+V + +I D + K
Sbjct: 27 RADDGFPKTVHVAAGERATAR---LLRVGLGRSVVVNVAEDVADVLVSNPEIADAVVRSK 83
Query: 70 EKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQS 108
+ V+ G G N+++ G N L + +
Sbjct: 84 NRVFVL-GNKAGQANLVLFGRNGRELASFNLRVEPDTSD 121
>gi|76811933|ref|YP_333435.1| RhcC2 [Burkholderia pseudomallei 1710b]
gi|126441311|ref|YP_001058908.1| type II/III secretion system protein [Burkholderia pseudomallei
668]
gi|126453026|ref|YP_001066150.1| type II/III secretion system protein [Burkholderia pseudomallei
1106a]
gi|134282366|ref|ZP_01769071.1| type II/III secretion system protein [Burkholderia pseudomallei
305]
gi|217421397|ref|ZP_03452901.1| type II/III secretion system protein [Burkholderia pseudomallei
576]
gi|226196310|ref|ZP_03791892.1| type II/III secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|242314528|ref|ZP_04813544.1| type II/III secretion system protein [Burkholderia pseudomallei
1106b]
gi|254179872|ref|ZP_04886471.1| type II/III secretion system protein [Burkholderia pseudomallei
1655]
gi|254188722|ref|ZP_04895233.1| type II/III secretion system protein [Burkholderia pseudomallei
Pasteur 52237]
gi|254197611|ref|ZP_04904033.1| type II/III secretion system protein [Burkholderia pseudomallei
S13]
gi|254261104|ref|ZP_04952158.1| type II/III secretion system protein [Burkholderia pseudomallei
1710a]
gi|254297713|ref|ZP_04965166.1| type II/III secretion system protein [Burkholderia pseudomallei
406e]
gi|76581386|gb|ABA50861.1| RhcC2 [Burkholderia pseudomallei 1710b]
gi|126220804|gb|ABN84310.1| type II/III secretion system protein [Burkholderia pseudomallei
668]
gi|126226668|gb|ABN90208.1| type II/III secretion system protein [Burkholderia pseudomallei
1106a]
gi|134246404|gb|EBA46493.1| type II/III secretion system protein [Burkholderia pseudomallei
305]
gi|157806781|gb|EDO83951.1| type II/III secretion system protein [Burkholderia pseudomallei
406e]
gi|157936401|gb|EDO92071.1| type II/III secretion system protein [Burkholderia pseudomallei
Pasteur 52237]
gi|169654352|gb|EDS87045.1| type II/III secretion system protein [Burkholderia pseudomallei
S13]
gi|184210412|gb|EDU07455.1| type II/III secretion system protein [Burkholderia pseudomallei
1655]
gi|217395139|gb|EEC35157.1| type II/III secretion system protein [Burkholderia pseudomallei
576]
gi|225931527|gb|EEH27532.1| type II/III secretion system protein [Burkholderia pseudomallei
Pakistan 9]
gi|242137767|gb|EES24169.1| type II/III secretion system protein [Burkholderia pseudomallei
1106b]
gi|254219793|gb|EET09177.1| type II/III secretion system protein [Burkholderia pseudomallei
1710a]
Length = 482
Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
G+ D + + G +++ V V D + DV + + V + G
Sbjct: 43 GMAVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVH-VPTPQAVFVLG 101
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRV 112
K G+T + LG NN +L + + S R+
Sbjct: 102 KKAGTTTLFALGANNRTILRETVVVDVDTPSLQRI 136
>gi|167824270|ref|ZP_02455741.1| type II/III secretion system protein [Burkholderia pseudomallei 9]
gi|167919049|ref|ZP_02506140.1| type II/III secretion system protein [Burkholderia pseudomallei
BCC215]
Length = 444
Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
G+ D + + G +++ V V D + DV + + V + G
Sbjct: 5 GMAVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVH-VPTPQAVFVLG 63
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRV 112
K G+T + LG NN +L + + S R+
Sbjct: 64 KKAGTTTLFALGANNRTILRETVVVDVDTPSLQRI 98
>gi|241518288|ref|YP_002978916.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240862701|gb|ACS60365.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 512
Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
+ + +T + + + I + ++LI++ ++V D + D + + +T
Sbjct: 49 ATYCRAENVISVTETGVNVTRHVSIGLNKTLIVELPQDAHDIVVSDPGVSDAI-VRATRT 107
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQS 108
+ + GK +G TNI +L N +++ +IA +
Sbjct: 108 IFLFGKKVGQTNIFILDANKRPIVNIDIAVERDIAG 143
>gi|294012239|ref|YP_003545699.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
UT26S]
gi|292675569|dbj|BAI97087.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
UT26S]
Length = 543
Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
+ + +++ ++ + + +S +L D + +VG+ +I DVL + ++V + GK +
Sbjct: 23 VASLNVSNANHAGQLDVPLNKSQVLTVDRPFAKALVGNAEIADVLPMT-NRSVYVLGKKM 81
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGT 117
G+T++ + N ++ ++A + V + +
Sbjct: 82 GTTSLTLYDSRNMMIAVVDVAVGPD---VVTLKRQLS 115
>gi|159043678|ref|YP_001532472.1| type II and III secretion system protein [Dinoroseobacter shibae
DFL 12]
gi|157911438|gb|ABV92871.1| type II and III secretion system protein [Dinoroseobacter shibae
DFL 12]
Length = 474
Score = 60.9 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+ +++ + ++++++ D+ ++ V + I D+ L +++ + GK+ G T + +LG
Sbjct: 37 ADSTLQVPMNRAVVVESDIPFAELSVANPGIADIATLSD-RSIYVLGKSQGRTTMTLLGA 95
Query: 91 NNDILLDTEIATFAN 105
+ ++ + ++ +
Sbjct: 96 DGRLITNVDVQVTPD 110
>gi|269105132|ref|ZP_06157826.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Photobacterium damselae subsp. damselae
CIP 102761]
gi|268160582|gb|EEZ39081.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Photobacterium damselae subsp. damselae
CIP 102761]
Length = 442
Score = 60.9 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + ++ G + + D V + D I D ++K K VVI GK +G TN+ +
Sbjct: 21 ASAESLLNLSEGDAATVPVDTEIDSVFISDPAIADYQVIDKNK-VVIFGKKIGHTNLFIF 79
Query: 89 GHNNDILLDTEIAT 102
+ + L + ++
Sbjct: 80 DNEGNELANRKVIV 93
>gi|312621080|ref|YP_003993808.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp
pilus assembly [Photobacterium damselae subsp. damselae]
gi|311872801|emb|CBX86892.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
pilus assembly [Photobacterium damselae subsp. damselae]
Length = 438
Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + ++ G + + D V + D I D ++K K VVI GK +G TN+ +
Sbjct: 17 ASAESLLNLSEGDAATVPVDTEIDSVFISDPAIADYQVIDKNK-VVIFGKKIGHTNLFIF 75
Query: 89 GHNNDILLDTEIAT 102
+ + L + ++
Sbjct: 76 DNEGNELANRKVIV 89
>gi|254510970|ref|ZP_05123037.1| bacterial type II/III secretion system protein [Rhodobacteraceae
bacterium KLH11]
gi|221534681|gb|EEE37669.1| bacterial type II/III secretion system protein [Rhodobacteraceae
bacterium KLH11]
Length = 476
Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 10/90 (11%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + + V ++++++ + + + + I D+ L +T+ + G+ G T + +
Sbjct: 46 AESLDVPVNRAIVVESEQPFADISIANAGIADISTLSD-RTIYVLGRAPGITTLTMFDGA 104
Query: 92 NDILLDTEIATFANEQSTVRVYTPGTLSFL 121
+++ + + + V + L
Sbjct: 105 GNLITNVRVRVSPD----VTEFKERLRQIL 130
>gi|13475294|ref|NP_106858.1| type II secretion system protein [Mesorhizobium loti MAFF303099]
gi|14026045|dbj|BAB52644.1| type II secretion system protein [Mesorhizobium loti MAFF303099]
Length = 432
Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 1/83 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A + + ++ + + V D I D A T+ + GK G
Sbjct: 6 APRAASNSIDGTLNLSSSLGKTVHLPAPATTIFVADPTIADYQA-ASNTTIFVFGKKSGR 64
Query: 83 TNIIVLGHNNDILLDTEIATFAN 105
T++ L + L I
Sbjct: 65 TSLFALDDKGEALAALRIVVTQP 87
>gi|209515951|ref|ZP_03264812.1| type II and III secretion system protein [Burkholderia sp. H160]
gi|209503609|gb|EEA03604.1| type II and III secretion system protein [Burkholderia sp. H160]
Length = 431
Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
+ IA G +L V V D + DV + +TV + GK G+T
Sbjct: 2 HGALAASGDPSLAIAAGGGEMLHLPEAAVAVFVADPDVADVH-VPTPETVFVLGKKAGTT 60
Query: 84 NIIVLGHNNDILLDTEIATFANEQSTVRV 112
+ LG +N +L + A+ S R+
Sbjct: 61 TLFALGAHNRTILRETVVVSADTPSIQRM 89
>gi|193213115|ref|YP_001999068.1| type II and III secretion system protein [Chlorobaculum parvum NCIB
8327]
gi|193086592|gb|ACF11868.1| type II and III secretion system protein [Chlorobaculum parvum NCIB
8327]
Length = 472
Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 15/108 (13%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ R++ G+S + + K+V VG+ +I D + L + + GK G+TN+IV
Sbjct: 31 AAPSTYRVSEGESRVYRMGSPIKRVAVGNPEIADYIIL-NPTELYLLGKKTGATNLIVWD 89
Query: 90 HNND-------------ILLDTEIATFANEQSTVRVYTPGTLSFLSCT 124
N + + D NE + +Y+ G L+ T
Sbjct: 90 QNGNSASTPLQVSRNVEPIKDLIRTVLPNETD-IHIYSSGPALVLAGT 136
>gi|84687277|ref|ZP_01015157.1| Outer membrane general secretion pathway protein, Secretin
[Maritimibacter alkaliphilus HTCC2654]
gi|84664710|gb|EAQ11194.1| Outer membrane general secretion pathway protein, Secretin
[Rhodobacterales bacterium HTCC2654]
Length = 474
Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + + + ++++++ D ++ + + I D+ L +T+ + GK+ G T + +L +
Sbjct: 38 AETLNVPMNRAVVVESDQPFAEISIANPGIADISTLSD-RTIYVLGKSQGRTTLTLLAPD 96
Query: 92 NDILLDTEIATFAN 105
++ + E+ +
Sbjct: 97 GTLISNVEVQVTPD 110
>gi|149200847|ref|ZP_01877822.1| bacterial type II/III secretion system protein [Roseovarius sp.
TM1035]
gi|149145180|gb|EDM33206.1| bacterial type II/III secretion system protein [Roseovarius sp.
TM1035]
Length = 472
Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 4 KRQREIKNETVRKKGIPTTASQKTPEDN--------SNRIRIAVGQSLILQFDVLPKQVI 55
K +R I + + A Q ++ S+ + +A+ ++++++ D ++
Sbjct: 2 KLRRHICAALLGLALVAGHAPQPAQAESIRVVRNGTSSALSVAMNRAVVVESDSPFAELS 61
Query: 56 VGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ + I D L E+T+ + GK G T + + ++ + ++ +
Sbjct: 62 IANPAIADFSTL-SERTIYVLGKTPGRTTLSLFDGLGKLITNIDVHVSTD 110
>gi|87199534|ref|YP_496791.1| type II and III secretion system protein [Novosphingobium
aromaticivorans DSM 12444]
gi|87135215|gb|ABD25957.1| type II and III secretion system protein [Novosphingobium
aromaticivorans DSM 12444]
Length = 517
Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 12 ETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK 71
R +GI ++ + + V +S ++ D + +VG+D I DVL + +
Sbjct: 24 NATRAQGIT------AENLHAGTLEVPVNKSQVVSTDRTIAKALVGNDDIADVLPVT-TR 76
Query: 72 TVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQS 108
++ + GK +G+T++ + +L ++A + +
Sbjct: 77 SIYVLGKKMGTTSLTLYDATGRVLSIMDVAVGPDVEG 113
>gi|56697919|ref|YP_168290.1| type II/III secretion system protein [Ruegeria pomeroyi DSS-3]
gi|56679656|gb|AAV96322.1| bacterial type II/III secretion system protein [Ruegeria pomeroyi
DSS-3]
Length = 475
Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 8/75 (10%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+ + + + ++++++ + ++ + + I D+ +L +T+ + GK+ G T + +
Sbjct: 44 AAETLDVPMNRAIVVESETPFAELSIANAGIADISSLSD-RTIYVLGKSPGLTTLSLFDA 102
Query: 91 NNDILLDTEIATFAN 105
++ + + +
Sbjct: 103 GGRLITNVNVRVSFD 117
>gi|307294424|ref|ZP_07574268.1| type II and III secretion system protein [Sphingobium
chlorophenolicum L-1]
gi|306880575|gb|EFN11792.1| type II and III secretion system protein [Sphingobium
chlorophenolicum L-1]
Length = 503
Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+ +++ ++ + + +S +L D + +VG+ +I DVL + ++V + GK +G+T++
Sbjct: 37 SNANHAGQLDVPLNKSQVLTADRPFAKALVGNAEIADVLPMT-NRSVYVLGKKMGTTSLT 95
Query: 87 VLGHNNDILLDTEIATFANEQSTVRVYTPGT 117
+ N ++ ++A + V + +
Sbjct: 96 LYDSRNIMIAVVDVAVGPD---VVTLKRQLS 123
>gi|323137425|ref|ZP_08072503.1| type II and III secretion system protein [Methylocystis sp. ATCC
49242]
gi|322397412|gb|EFX99935.1| type II and III secretion system protein [Methylocystis sp. ATCC
49242]
Length = 504
Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ RI + VG+S+I+ +V+VG+ K+ D + + + + I G + G T I + +
Sbjct: 45 ARRISMGVGKSIIVDLPRDATEVVVGNPKVADAI-VRSARKLYIMGMDAGQTTIFAVDSS 103
Query: 92 NDILLDTEIATFANEQ 107
+ + EI+ +
Sbjct: 104 GRQVANLEISIGRDVG 119
>gi|237678812|emb|CAQ57539.1| RhcC2 protein [Bradyrhizobium elkanii]
Length = 484
Score = 59.3 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 1/82 (1%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
+ P S + + Q + + V D I D A T+ + GK G T
Sbjct: 56 PRAAPGGTSGTLNLTSSQGKTVHLTAAATSIFVADPTIADYQA-PSNTTIFVFGKKSGRT 114
Query: 84 NIIVLGHNNDILLDTEIATFAN 105
++ L N + L + +
Sbjct: 115 SLFALNENGEALAELRVVVTQP 136
>gi|157961834|ref|YP_001501868.1| type II and III secretion system protein [Shewanella pealeana ATCC
700345]
gi|157846834|gb|ABV87333.1| type II and III secretion system protein [Shewanella pealeana ATCC
700345]
Length = 478
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A T ++ I + +S +L +V VG+ I D+ L ++ + I GK LGS
Sbjct: 23 AGGPTAGARNDVQLIPIFKSRVLMLKGPVHRVSVGNPSIADIKLLPNDE-LYILGKQLGS 81
Query: 83 TNIIVLGHNNDI--LLDTEIATFANEQSTVRVYT 114
TN+++ N + ++D E+ N T R+Y
Sbjct: 82 TNVMIWDKNEQLARIMDIEVTHDLNGLKT-RLYQ 114
>gi|167581961|ref|ZP_02374835.1| type II/III secretion system protein [Burkholderia thailandensis
TXDOH]
Length = 441
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
G + + + + G +++ V V D + DV + + V + G
Sbjct: 2 GAAVEPRLARAAEPAAVLAVPAGGGEMVKLPQPAVAVFVADPDVADVH-VPTPQAVFVLG 60
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRV 112
K G+T + LG N+ +L + + S R+
Sbjct: 61 KKAGTTTLFALGANDRTILRETVVVNVDTPSLQRI 95
>gi|260775653|ref|ZP_05884549.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
gi|260608069|gb|EEX34238.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
Length = 442
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 1/100 (1%)
Query: 15 RKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVV 74
+ S T S + +A G + V V + + D ++K K VV
Sbjct: 7 FTGALSPLLSVATTVAASEYLPMAEGDARPFATQQEIGTVFVSNPAVADYQVIDKHK-VV 65
Query: 75 ITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYT 114
I K+ G +++IV + + +L I + S R
Sbjct: 66 IYSKSTGKSSLIVFDQSGNTILSRRIQVNKSADSIQRYLR 105
>gi|167841781|ref|ZP_02468465.1| type II/III secretion system protein [Burkholderia thailandensis
MSMB43]
Length = 433
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A++ P + + G +++ V V D + DV + + V + GK G+
Sbjct: 4 AAEPAP-----VLAVPAGGGEMVKLPEPAVAVFVADPDVADVH-VPTPQAVFVLGKKAGT 57
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTVRV 112
T + LG NN +L + + S R+
Sbjct: 58 TTLFALGANNRTILRETVVVDVDTPSLQRI 87
>gi|13474660|ref|NP_106229.1| exporter protein, cpaC [Mesorhizobium loti MAFF303099]
gi|14025415|dbj|BAB52015.1| exporter protein; CpaC [Mesorhizobium loti MAFF303099]
Length = 471
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
T + R+++ + +S+++ ++V + + D + + + + GK++G TNI
Sbjct: 2 TATTATQRVKLGLNKSVVIDLPSDAYDILVANPTVADAVT-RTARRIYLFGKSVGETNIF 60
Query: 87 VLGHNNDILLDTEIATFANEQS 108
V G N + + ++A +
Sbjct: 61 VFGPNGEQIASLDLAVERDVAG 82
>gi|260431084|ref|ZP_05785055.1| bacterial type II/III secretion system protein [Silicibacter
lacuscaerulensis ITI-1157]
gi|260414912|gb|EEX08171.1| bacterial type II/III secretion system protein [Silicibacter
lacuscaerulensis ITI-1157]
Length = 452
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 10/90 (11%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + + + ++++++ + ++ + + I D+ +L +T+ + GK G T + +
Sbjct: 22 AETLDVPMNRAIVVESETPFAELSIANAGIADISSLSD-RTIYVLGKAPGLTTLTLFDGA 80
Query: 92 NDILLDTEIATFANEQSTVRVYTPGTLSFL 121
+++ + + + V + L
Sbjct: 81 GNLIANVRVRVAPD----VTEFKERLRQIL 106
>gi|118589703|ref|ZP_01547108.1| pilus assembly protein [Stappia aggregata IAM 12614]
gi|118437789|gb|EAV44425.1| pilus assembly protein [Stappia aggregata IAM 12614]
Length = 483
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/107 (13%), Positives = 39/107 (36%), Gaps = 4/107 (3%)
Query: 10 KNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEK 69
+ E + A ++ + + VG+S+++ V+V + +I D L
Sbjct: 41 QAEGNFPSQVHIAAGERATGR---ILNVGVGRSVVINLAEDAADVLVSNPEIADA-VLRT 96
Query: 70 EKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPG 116
+ + + G G + +++ + L ++ + R+
Sbjct: 97 PRRIFVIGNTAGQSRLVLFSRSGRELASFDVRVEKDTSDITRIIRKL 143
>gi|83950066|ref|ZP_00958799.1| bacterial type II/III secretion system protein [Roseovarius
nubinhibens ISM]
gi|83837965|gb|EAP77261.1| bacterial type II/III secretion system protein [Roseovarius
nubinhibens ISM]
Length = 429
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 39 VGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDT 98
+ ++++++ DV ++ V + I D L +T+ + GK G T + +L ++ +
Sbjct: 1 MNRAIVVESDVPFAELSVANASIADFSTLSD-RTIYLLGKAPGRTTLTLLDEAGRLITNV 59
Query: 99 EIATFAN 105
EI A+
Sbjct: 60 EIHVSAD 66
>gi|148253058|ref|YP_001237643.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1]
gi|146405231|gb|ABQ33737.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1]
Length = 496
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
I + +S ++ D +VG I DVL + + V I GK +G+TN+ + + ++
Sbjct: 42 ISVTRDKSRTIKLDKPFASALVGAPDIADVLPMSD-RIVYIQGKKIGTTNVTLFDQDKNV 100
Query: 95 LLDTEIATFANEQSTVRVYTPGTLS 119
+ + + Q+ GT S
Sbjct: 101 IGVIGLEVTIDIQNIASKIRSGTNS 125
>gi|121600042|ref|YP_993006.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
gi|124383335|ref|YP_001026338.1| type II secretion system protein [Burkholderia mallei NCTC 10229]
gi|126450127|ref|YP_001080388.1| RhcC2 [Burkholderia mallei NCTC 10247]
gi|237812165|ref|YP_002896616.1| type II/III secretion system protein [Burkholderia pseudomallei
MSHR346]
gi|254178619|ref|ZP_04885274.1| RhcC2 [Burkholderia mallei ATCC 10399]
gi|254358540|ref|ZP_04974813.1| RhcC2 [Burkholderia mallei 2002721280]
gi|121228852|gb|ABM51370.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
gi|124291355|gb|ABN00624.1| putative type II secretion system protein [Burkholderia mallei NCTC
10229]
gi|126242997|gb|ABO06090.1| RhcC2 [Burkholderia mallei NCTC 10247]
gi|148027667|gb|EDK85688.1| RhcC2 [Burkholderia mallei 2002721280]
gi|160699658|gb|EDP89628.1| RhcC2 [Burkholderia mallei ATCC 10399]
gi|237503093|gb|ACQ95411.1| type II/III secretion system protein [Burkholderia pseudomallei
MSHR346]
Length = 482
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
Query: 19 IPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK 78
+ D + + G +++ V V D + DV + + V + GK
Sbjct: 44 MAVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVH-VPTPQAVFVLGK 102
Query: 79 NLGSTNIIVLGHNNDILLDTEIATFANEQSTVRV 112
G+T + LG NN +L + + S R+
Sbjct: 103 KAGTTTLFALGANNRTILRETVVVDVDTPSLQRI 136
>gi|304392384|ref|ZP_07374325.1| type II and III secretion system protein [Ahrensia sp. R2A130]
gi|303295488|gb|EFL89847.1| type II and III secretion system protein [Ahrensia sp. R2A130]
Length = 544
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 33 NRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNN 92
+R+ + +SL++ + V+V + + D + + + + GK +G TN+ V +
Sbjct: 101 KLVRLGLDKSLVVDLPSVANDVLVANPGVADA-VMRTSQRLYLFGKQVGQTNVFVFDNGG 159
Query: 93 DILLDTEIATFAN 105
+ + EI +
Sbjct: 160 NQIAALEILIERD 172
>gi|212635453|ref|YP_002311978.1| Flp pilus assembly protein [Shewanella piezotolerans WP3]
gi|212556937|gb|ACJ29391.1| Flp pilus assembly protein [Shewanella piezotolerans WP3]
Length = 479
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
T + S+ +I + +S +L + +V VG+ I D+ L ++ + I GK LGSTNI
Sbjct: 26 PTAKVRSDIQKIPIFKSRVLMLEGPVHRVSVGNPSIADIKLLPNDE-LYILGKQLGSTNI 84
Query: 86 IVLGHNNDI--LLDTEIA 101
++ + + ++D E+
Sbjct: 85 MIWDKDEQLSKIMDIEVT 102
>gi|83312848|ref|YP_423112.1| hypothetical protein amb3749 [Magnetospirillum magneticum AMB-1]
gi|82947689|dbj|BAE52553.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
Length = 150
Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 33 NRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNN 92
+ I +G + +L + + V+VG+ I DV ++ +T+ + GK G T + VL
Sbjct: 26 EALEIPLGGATLLPMRGVARSVVVGNPAIADV-TVDGPRTITVFGKAPGGTTLAVLDAGG 84
Query: 93 DILLDTEIATFANEQSTVRVYTPGTLS--------FLSCTP-RCLPSS 131
+L+ ++ A +++V + + + C P C P++
Sbjct: 85 GVLVQRQVVVLAGGETSVTLRYGTGKTWVPGGATAIVDCGPTACAPAN 132
>gi|53719431|ref|YP_108417.1| putative fimbriae assembly-related protein [Burkholderia
pseudomallei K96243]
gi|167815898|ref|ZP_02447578.1| RhcC2 [Burkholderia pseudomallei 91]
gi|167845816|ref|ZP_02471324.1| RhcC2 [Burkholderia pseudomallei B7210]
gi|52209845|emb|CAH35817.1| putative fimbriae assembly-related protein [Burkholderia
pseudomallei K96243]
Length = 439
Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
Query: 19 IPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK 78
+ D + + G +++ V V D + DV + + V + GK
Sbjct: 1 MAVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVH-VPTPQAVFVLGK 59
Query: 79 NLGSTNIIVLGHNNDILLDTEIATFANEQSTVRV 112
G+T + LG NN +L + + S R+
Sbjct: 60 KAGTTTLFALGANNRTILRETVVVDVDTPSLQRI 93
>gi|167738675|ref|ZP_02411449.1| type II/III secretion system protein [Burkholderia pseudomallei 14]
Length = 434
Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
D + + G +++ V V D + DV + + V + GK G+T +
Sbjct: 3 ARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVH-VPTPQAVFVLGKKAGTTTL 61
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRV 112
LG NN +L + + S R+
Sbjct: 62 FALGANNRTILRETVVVDVDTPSLQRI 88
>gi|110636321|ref|YP_676529.1| type II and III secretion system protein [Mesorhizobium sp. BNC1]
gi|110287305|gb|ABG65364.1| type II and III secretion system protein [Chelativorans sp. BNC1]
Length = 516
Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ R+++ + ++L+L ++V + + D + + + + GK +G TNI V G
Sbjct: 43 AGTERLKLGLNKTLVLDLPSDAYDILVANPAVADAVT-RTARRIYLFGKQVGETNIFVFG 101
Query: 90 HNNDILLDTEIATFANEQS 108
+ + ++A +
Sbjct: 102 AGGEQIARIDVAVERDVAG 120
>gi|167911033|ref|ZP_02498124.1| type II/III secretion system protein [Burkholderia pseudomallei
112]
Length = 438
Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
D + + G +++ V V D + DV + + V + GK G+T +
Sbjct: 7 ARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVH-VPTPQAVFVLGKKAGTTTL 65
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRV 112
LG NN +L + + S R+
Sbjct: 66 FALGANNRTILRETVVVDVDTPSLQRI 92
>gi|90419764|ref|ZP_01227673.1| Flp pilus assembly protein, secretin CpaC (type II and type III
secretion system) [Aurantimonas manganoxydans SI85-9A1]
gi|90335805|gb|EAS49553.1| Flp pilus assembly protein, secretin CpaC (type II and type III
secretion system) [Aurantimonas manganoxydans SI85-9A1]
Length = 540
Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 6/106 (5%)
Query: 18 GIPTTASQKTPE--DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
+P A Q S I + + ++ ++ + ++V + + D + + + I
Sbjct: 39 TLPAQAEQTVVNVRQGSQSINLGLNKTKVIVLEADAHDILVANPAVADAVT-RDARRIYI 97
Query: 76 TGKNLGSTNIIVLGHNNDILLDTEIATFANEQS---TVRVYTPGTL 118
GK +G TNI+V N + ++ + T+R Y P ++
Sbjct: 98 FGKQIGQTNIVVFDRQNRQIASIDLKIERDINGLEATIRKYVPSSV 143
>gi|89053488|ref|YP_508939.1| type II and III secretion system protein [Jannaschia sp. CCS1]
gi|88863037|gb|ABD53914.1| type II and III secretion system protein [Jannaschia sp. CCS1]
Length = 466
Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+++ +R+ + ++++++ ++L ++ V + I D+ L E+++ + G+ G T + +LG
Sbjct: 36 ESTGTLRVPMNRAVVVEAEMLFAELSVANPAIADIATL-SERSIYVLGRAPGRTTMTLLG 94
Query: 90 HNNDILLDTEIATFAN 105
+ ++ + EI +
Sbjct: 95 ADGSLIANVEIQVVPD 110
>gi|150398541|ref|YP_001329008.1| type II and III secretion system protein [Sinorhizobium medicae
WSM419]
gi|150030056|gb|ABR62173.1| type II and III secretion system protein [Sinorhizobium medicae
WSM419]
Length = 524
Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
I + + +++++ ++V D + D + + + + GK++G TNI V G
Sbjct: 63 ARKTINLGLNKAVVVDLPSDAHDILVADPSLADAIT-RTSRRIYLFGKSVGQTNIFVFGP 121
Query: 91 NNDILLDTEIATFANEQS 108
+ ++ E+A +
Sbjct: 122 GGEEIVSLEVAVERDVAG 139
>gi|83719085|ref|YP_442980.1| type II/III secretion system protein [Burkholderia thailandensis
E264]
gi|257139204|ref|ZP_05587466.1| type II/III secretion system protein [Burkholderia thailandensis
E264]
gi|83652910|gb|ABC36973.1| type II/III secretion system protein [Burkholderia thailandensis
E264]
Length = 492
Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+ + + + G +++ V V D + DV + + V + GK G+T +
Sbjct: 61 ARAAEPAAVLAVPAGGGEMVKLPQPAVAVFVADPDVADVH-VPTPQAVFVLGKKAGTTTL 119
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRV 112
LG N+ +L + + S R+
Sbjct: 120 FALGANDRTILRETVVVNVDTPSLQRI 146
>gi|167894387|ref|ZP_02481789.1| type II/III secretion system protein [Burkholderia pseudomallei
7894]
Length = 426
Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+ + G +++ V V D + DV + + V + GK G+T + LG NN
Sbjct: 3 VLAVPAGGGEMVKLPAPAVAVFVADPDVADVH-VPTPQAVFVLGKKAGTTTLFALGANNR 61
Query: 94 ILLDTEIATFANEQSTVRV 112
+L + + S R+
Sbjct: 62 TILRETVVVDVDTPSLQRI 80
>gi|15963894|ref|NP_384247.1| putative pilus assembly transmembrane protein [Sinorhizobium
meliloti 1021]
gi|307315791|ref|ZP_07595305.1| type II and III secretion system protein [Sinorhizobium meliloti
BL225C]
gi|307320426|ref|ZP_07599843.1| type II and III secretion system protein [Sinorhizobium meliloti
AK83]
gi|15073069|emb|CAC41528.1| Pilus assembly protein [Sinorhizobium meliloti 1021]
gi|306893992|gb|EFN24761.1| type II and III secretion system protein [Sinorhizobium meliloti
AK83]
gi|306898559|gb|EFN29232.1| type II and III secretion system protein [Sinorhizobium meliloti
BL225C]
Length = 511
Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
I + + +++++ ++V D + D + + + + GK++G TNI V G
Sbjct: 50 ARKTINLGLNKAVVVDLPSDAHDILVADPSLADAIT-RTSRRIYLFGKSVGQTNIFVFGP 108
Query: 91 NNDILLDTEIATFANEQS 108
+ ++ E+A +
Sbjct: 109 GGEEIVSLEVAVERDVAG 126
>gi|167620125|ref|ZP_02388756.1| type II/III secretion system protein [Burkholderia thailandensis
Bt4]
Length = 427
Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + + G +++ V V D + DV + + V + GK G+T + LG N
Sbjct: 2 AAVLAVPAGGGEMVKLPQPAVAVFVADPDVADVH-VPTPQAVFVLGKKAGTTTLFALGAN 60
Query: 92 NDILLDTEIATFANEQSTVRV 112
+ +L + + S R+
Sbjct: 61 DRTILRETVVVNVDTPSLQRI 81
>gi|149909547|ref|ZP_01898201.1| general secretion pathway protein D [Moritella sp. PE36]
gi|149807452|gb|EDM67403.1| general secretion pathway protein D [Moritella sp. PE36]
Length = 432
Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ ++ G++ ++ V + D +I D + VV+ GK +GST+IIV
Sbjct: 8 TALAQKIVNLSEGEAKTIKSIKEIASVFIADPEIADYQVI-DANKVVVFGKKIGSTSIIV 66
Query: 88 LGHNNDILLDTEIATFANEQSTVRVYTPGTL 118
N D + + ++ S V + L
Sbjct: 67 FDENGDTITNNKLVINK---SLVHIQQQIQL 94
>gi|83312840|ref|YP_423104.1| Flp pilus assembly protein, secretin CpaC [Magnetospirillum
magneticum AMB-1]
gi|82947681|dbj|BAE52545.1| Flp pilus assembly protein, secretin CpaC [Magnetospirillum
magneticum AMB-1]
Length = 495
Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 16 KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
+G+ + A++ +++ VG+S+ L K+V++G+ I DV+ + V I
Sbjct: 58 LRGLSSAAAES--------MQVPVGKSIDLPLPGAVKEVVIGNSDIADVI-VRTPHMVHI 108
Query: 76 TGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
TG+ +G TN+ ++ + ++ ++A + Q+
Sbjct: 109 TGRAVGQTNVFLMDRSGRVMRRIDLAVAIDSQAV 142
>gi|78186671|ref|YP_374714.1| type II secretion system protein [Chlorobium luteolum DSM 273]
gi|78166573|gb|ABB23671.1| type II secretion system protein [Chlorobium luteolum DSM 273]
Length = 486
Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 36 RIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDIL 95
R+ VG+S + + +V VGD ++ D + L + + GK GSTN+ V +
Sbjct: 38 RVPVGESRVYRLPQPVTRVAVGDPEVADYIML-NPSEIYLLGKKTGSTNLTVWDRKGKV- 95
Query: 96 LDTEIATFAN 105
+ N
Sbjct: 96 SSRSLRVSRN 105
>gi|110679396|ref|YP_682403.1| type II/III secretion system protein, putative [Roseobacter
denitrificans OCh 114]
gi|109455512|gb|ABG31717.1| type II/III secretion system protein, putative [Roseobacter
denitrificans OCh 114]
Length = 463
Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 11/92 (11%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 14 VRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTV 73
A + + S + ++ ++++++ ++ ++ + + I D+ +L +++
Sbjct: 24 TAPLSAQAEALRIIARETSETLNVSQNRAVVVESEIPFAELSIANPGIADISSLSD-RSI 82
Query: 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ GK G T + +L ++ + E+ +
Sbjct: 83 YVLGKVPGITTLTLLDAAGQLITNVEVRVAPD 114
>gi|163733542|ref|ZP_02140985.1| type II/III secretion system protein, putative [Roseobacter
litoralis Och 149]
gi|161393330|gb|EDQ17656.1| type II/III secretion system protein, putative [Roseobacter
litoralis Och 149]
Length = 440
Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 11/90 (12%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 16 KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
A + + S + ++ ++++++ ++ ++ + + I D+ +L +++ +
Sbjct: 3 PLTAQAEALRIIARETSETLNVSQNRAVVVESEIPFAELSIANPGIADISSLSD-RSIYV 61
Query: 76 TGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
GK G T + +L ++ + E+ +
Sbjct: 62 LGKVPGITTLTLLDAAGQLITNVEVRVAPD 91
>gi|149911409|ref|ZP_01900027.1| Flp pilus assembly protein, secretin CpaC [Moritella sp. PE36]
gi|149805517|gb|EDM65522.1| Flp pilus assembly protein, secretin CpaC [Moritella sp. PE36]
Length = 489
Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 19 IPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK 78
+ T + + + +RI + +S LQ D +V VG+ I D+L L + + + I GK
Sbjct: 29 VSTAFAGGPTALDDDSVRIPIFKSKTLQMDKAIHRVSVGNSDIADILIL-RSRELYIVGK 87
Query: 79 NLGSTNIIVLGHNNDILLDTEIATFAN 105
LG+TN++V +++++ + +
Sbjct: 88 RLGTTNMMVWDKDDNLVHVQNLEVTHD 114
>gi|39936740|ref|NP_949016.1| type II and III secretion system protein [Rhodopseudomonas
palustris CGA009]
gi|192292566|ref|YP_001993171.1| type II and III secretion system protein [Rhodopseudomonas
palustris TIE-1]
gi|39650596|emb|CAE29119.1| putative exporter protein, cpaC [Rhodopseudomonas palustris CGA009]
gi|192286315|gb|ACF02696.1| type II and III secretion system protein [Rhodopseudomonas
palustris TIE-1]
Length = 480
Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 1/97 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
+ N+ I + +G+S+++ K V+V D KI + + + I G
Sbjct: 42 AAPVPPASSGLNAQSISLGIGKSMVIDLPRDIKDVLVADPKIANA-VVRSAQRAYIIGAA 100
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPG 116
+G TNI+ + +IA +
Sbjct: 101 VGQTNIVFFDSAGRQIAAYDIAVTRDLNGLRTALKQT 137
>gi|85705151|ref|ZP_01036251.1| bacterial type II/III secretion system protein [Roseovarius sp.
217]
gi|85670473|gb|EAQ25334.1| bacterial type II/III secretion system protein [Roseovarius sp.
217]
Length = 428
Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 9/67 (13%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 39 VGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDT 98
+ ++++++ D ++ + + I D L +T+ + GK G T + + ++ +
Sbjct: 1 MNRAVVVESDSPFAELSIANPAIADFSTLSD-RTIYVLGKTPGRTTLSLFDGAGQLITNI 59
Query: 99 EIATFAN 105
++ +
Sbjct: 60 DVHVSTD 66
>gi|315121891|ref|YP_004062380.1| putative pilus assembly protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495293|gb|ADR51892.1| putative pilus assembly protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 471
Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
S +I I +G+ +IL + V+V D DV + KTV I GK++G N+I++GH+
Sbjct: 47 SKKINIGLGKVVILHLPSRVQDVLVSDPTKADV-VVHSSKTVYIFGKSVGQANVILIGHD 105
Query: 92 NDILLDTEIATFANEQSTVRVYTP 115
LL+ +I + ++ +
Sbjct: 106 EKQLLNIDIFIERDIRNLEMTFRR 129
>gi|218509314|ref|ZP_03507192.1| pilus assembly secretion protein [Rhizobium etli Brasil 5]
Length = 177
Score = 57.0 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
+T D R+++ + +++++ ++V D + D + + + + GK +G TN
Sbjct: 50 AQTGPDAHRRLKLGLNKAVVVDLPEDAHDILVSDPSMADAVT-RTSRRIYLFGKKVGQTN 108
Query: 85 IIVLGHNNDILLDTEIATFANEQS 108
I V G +++ +I +
Sbjct: 109 IFVFGAGGQEIINLDIEIERDVSG 132
>gi|82703477|ref|YP_413043.1| type II and III secretion system protein [Nitrosospira multiformis
ATCC 25196]
gi|82411542|gb|ABB75651.1| type II and III secretion system protein [Nitrosospira multiformis
ATCC 25196]
Length = 574
Score = 57.0 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
A ++ + + G+S +L+ ++ VG+ + DV L + + GK+
Sbjct: 75 AKPAGPVEGLLAASDMDVTYGKSALLRLPAPVTRISVGNPDVADV-TLISPGEIYVLGKS 133
Query: 80 LGSTNIIVLGHNN 92
+G+TN+I+
Sbjct: 134 IGTTNVILWTRGG 146
>gi|320158383|ref|YP_004190761.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
pilus assembly [Vibrio vulnificus MO6-24/O]
gi|319933695|gb|ADV88558.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
pilus assembly [Vibrio vulnificus MO6-24/O]
Length = 441
Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+++ + + G + + V VGD +I D +++ K VV+ G G+T++IV
Sbjct: 21 NSNELMNLNQGSAKTISLKRQISTVFVGDPEIADYKIIDETK-VVVYGVGQGATSVIVYD 79
Query: 90 HNNDILLDTEIATFANEQSTVRVYTPG 116
+ L + E+ ++R+
Sbjct: 80 RAGNELYNAEVVVNK----SLRLVKQT 102
>gi|239833237|ref|ZP_04681566.1| type II and III secretion system protein [Ochrobactrum intermedium
LMG 3301]
gi|239825504|gb|EEQ97072.1| type II and III secretion system protein [Ochrobactrum intermedium
LMG 3301]
Length = 507
Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
S I++ + +S++L V+V + I D + + + + GK +G TNI V G N
Sbjct: 48 SQTIKLGLNKSVVLDLPQDAYDVLVSNPTIADAVT-RTSRRIYLFGKQVGQTNIFVFGQN 106
Query: 92 NDILLDTEIATFANEQS 108
+ + ++ +
Sbjct: 107 GEQVASIDVEIERDVSG 123
>gi|209551759|ref|YP_002283676.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|209537515|gb|ACI57450.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length = 499
Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+T D R+++ + +++++ ++V D + D + + + + GK +G TNI
Sbjct: 51 QTGRDAHRRLKLGLNKAVVVDLPEDAHDILVSDPTMADAVT-RTSRRIYLFGKKVGQTNI 109
Query: 86 IVLGHNNDILLDTEIATFANEQST-VRVYT 114
V G +++ +I + V ++
Sbjct: 110 FVFGAGGQEIVNLDIEIERDVSGLEVNLHR 139
>gi|148258235|ref|YP_001242820.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1]
gi|146410408|gb|ABQ38914.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1]
Length = 497
Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
TA+ + N+ + + VG+S+++ K V+V D KI + + + I G
Sbjct: 50 AVTAAAADGQINARFLALGVGKSVVIDLPRDIKDVLVADPKIANA-VVRSSQRAYIIGAT 108
Query: 80 LGSTNIIVLGHNNDILLDTEIATFAN 105
+G TNI+ + +IA +
Sbjct: 109 VGQTNIVFFDAQGQQIAAYDIAVKRD 134
>gi|83859357|ref|ZP_00952878.1| pilus assembly protein CpaC [Oceanicaulis alexandrii HTCC2633]
gi|83852804|gb|EAP90657.1| pilus assembly protein CpaC [Oceanicaulis alexandrii HTCC2633]
Length = 529
Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 13/95 (13%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Query: 11 NETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKE 70
T + + S +++ +GQ+ ++ V++ +D++ +
Sbjct: 29 GRTEANNTLQVHIREPGAGPASESLQLPLGQAAVIHLPEDAADVVIANDEVASA-VVRTT 87
Query: 71 KTVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ + G+ +G TNI + ++LD + +
Sbjct: 88 RRAFVMGQAVGRTNIFFFNADGGLILDLNVRVERD 122
>gi|78186537|ref|YP_374580.1| type II secretion system protein [Chlorobium luteolum DSM 273]
gi|78166439|gb|ABB23537.1| type II secretion system protein [Chlorobium luteolum DSM 273]
Length = 461
Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ + VG+S + + + K+V VG+ ++ D + L + + GK G+TN+I+
Sbjct: 18 AAPSTYLVPVGESRVYRLEQPIKRVAVGNPEVADYIML-NSSELYLLGKKTGATNLILWD 76
Query: 90 HNND 93
+
Sbjct: 77 QKGN 80
>gi|323495637|ref|ZP_08100708.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp
pilus assembly [Vibrio sinaloensis DSM 21326]
gi|323319272|gb|EGA72212.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp
pilus assembly [Vibrio sinaloensis DSM 21326]
Length = 440
Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A + + + + G++ + V + + +I D ++K K +V+ GK +GS
Sbjct: 13 AVWSSLASSQVLVNLGEGEAKAITTKQEIASVFISNPEIADYQVVDKNK-LVVFGKKVGS 71
Query: 83 TNIIVLGHNNDILLDTEIAT 102
+++ N++ ++ ++
Sbjct: 72 VSLLAFDDNSNTIVSRKLVV 91
>gi|292491519|ref|YP_003526958.1| type II and III secretion system protein [Nitrosococcus halophilus
Nc4]
gi|291580114|gb|ADE14571.1| type II and III secretion system protein [Nitrosococcus halophilus
Nc4]
Length = 565
Score = 56.2 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
D ++ + +S +++ + K++ VG+ I D+L L + + + GK LG+TN++V
Sbjct: 57 SDIEGDFQVPLYKSGVIELEERAKRISVGNPGIADILMLH-SRQLYVVGKALGTTNVVVW 115
Query: 89 GHNNDILLDTEIATFAN 105
N + I +
Sbjct: 116 DKNERVFASFNIEVVHD 132
>gi|240139026|ref|YP_002963501.1| putative pilus assembly protein; putative precursor
[Methylobacterium extorquens AM1]
gi|240008998|gb|ACS40224.1| putative pilus assembly protein; putative precursor
[Methylobacterium extorquens AM1]
Length = 502
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 44/117 (37%), Gaps = 9/117 (7%)
Query: 9 IKNETVRKKGIPTTASQKTPEDNSN----RIRIAVGQSLILQFDVLPKQVIVGDDKIVDV 64
+ + G+ + T N R+ ++ G+SLI+ K+V V + + +
Sbjct: 25 LSGPASAQAGLSGASPVLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVANA 84
Query: 65 LALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFL 121
+ + + + G + G+T+I V+ + ++ + + V L
Sbjct: 85 -VVRSSRKLFLIGIDNGATSIFVMDGEGRQIAALDVTIARD----INVLRQSLQQSL 136
>gi|153834055|ref|ZP_01986722.1| Flp pilus assembly protein [Vibrio harveyi HY01]
gi|148869610|gb|EDL68600.1| Flp pilus assembly protein [Vibrio harveyi HY01]
Length = 486
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
+ P + + +A QS L K+V +GD +++D++ L + + + GK LG+
Sbjct: 17 SVNAAPAQSGKVVSVAHHQSTQLMISGKAKKVTLGDPEVLDIIVLRSNE-LFLVGKKLGT 75
Query: 83 TNIIVLGHNNDILLDTEIATFAN 105
TN+ V ++ + +
Sbjct: 76 TNVSVWDSRGRLIEQFNVEVTHD 98
>gi|190889881|ref|YP_001976423.1| pilus assembly secretion protein [Rhizobium etli CIAT 652]
gi|190695160|gb|ACE89245.1| pilus assembly secretion protein [Rhizobium etli CIAT 652]
gi|327194694|gb|EGE61540.1| pilus assembly secretion protein [Rhizobium etli CNPAF512]
Length = 499
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
+T D R+++ + +++++ ++V D + D + + + + GK +G TN
Sbjct: 50 AQTGPDAHRRLKLGLNKAVVVDLPEDAHDILVSDPSMADAVT-RTSRRIYLFGKKVGQTN 108
Query: 85 IIVLGHNNDILLDTEIATFANEQS 108
I V G +++ +I +
Sbjct: 109 IFVFGAGGQEIINLDIEIERDVSG 132
>gi|163851903|ref|YP_001639946.1| type II and III secretion system protein [Methylobacterium
extorquens PA1]
gi|163663508|gb|ABY30875.1| type II and III secretion system protein [Methylobacterium
extorquens PA1]
Length = 502
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 44/117 (37%), Gaps = 9/117 (7%)
Query: 9 IKNETVRKKGIPTTASQKTPEDNSN----RIRIAVGQSLILQFDVLPKQVIVGDDKIVDV 64
+ + G+ + T N R+ ++ G+SLI+ K+V V + + +
Sbjct: 25 LSGPASAQAGLSGASPVLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVANA 84
Query: 65 LALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFL 121
+ + + + G + G+T+I V+ + ++ + + V L
Sbjct: 85 -VVRSSRKLFLIGIDNGATSIFVMDGEGRQIAALDVTIARD----INVLRQSLQQSL 136
>gi|316933039|ref|YP_004108021.1| type II and III secretion system protein [Rhodopseudomonas
palustris DX-1]
gi|315600753|gb|ADU43288.1| type II and III secretion system protein [Rhodopseudomonas
palustris DX-1]
Length = 478
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
A + N+ + + +G+S+++ K V+V D KI + + + I G +G
Sbjct: 42 AAPAASGGLNAQSVALGIGKSMVIDLPRDIKDVLVADPKIANA-VIRSAQRAYIIGAAVG 100
Query: 82 STNIIVLGHNNDILLDTEIATFANEQSTVRVYTPG 116
TNI+ + +IA +
Sbjct: 101 QTNIVFFDSTGRQIAAYDIAVTRDLNGIRTALKQT 135
>gi|254418362|ref|ZP_05032086.1| Putative phospholipid-binding domain family [Brevundimonas sp.
BAL3]
gi|196184539|gb|EDX79515.1| Putative phospholipid-binding domain family [Brevundimonas sp.
BAL3]
Length = 517
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 1/96 (1%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
G+ T + + I + G S + + VIV + ++ + + L +
Sbjct: 22 AAPVAGLAQTRAAVSMGAAPQLINLPRGTSFAVDLPADARDVIVANPQVAEAM-LHSPRR 80
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQS 108
+ + G G T+ + L +L + A +
Sbjct: 81 ITVIGIAPGETDAVFLDAAGRTILSLRVRVDAGTSA 116
>gi|90409526|ref|ZP_01217562.1| type II secretion system protein [Psychromonas sp. CNPT3]
gi|90309367|gb|EAS37616.1| type II secretion system protein [Psychromonas sp. CNPT3]
Length = 98
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + + + Q+ +L K + + D++ D L K ++I GK +GST++ VL
Sbjct: 17 SAQAKTLNVTLDQAKLLVLPKTAKSIFIASDRVADYQTLTNTK-IMIFGKRVGSTSLYVL 75
Query: 89 GHNNDILLDTEIATFAN 105
+++ + N
Sbjct: 76 DARENVIYSATVKVNHN 92
>gi|27378611|ref|NP_770140.1| hypothetical protein blr3500 [Bradyrhizobium japonicum USDA 110]
gi|27351759|dbj|BAC48765.1| blr3500 [Bradyrhizobium japonicum USDA 110]
Length = 550
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Query: 10 KNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEK 69
+ E ++G + ++ R+R+ V +S + D +I G IVDV +L
Sbjct: 34 RAEAADRRGSSGGVF-VSEMNDVQRVRVVVNKSRTFKVDTAFATIIAGSPDIVDVKSLSD 92
Query: 70 EKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQS 108
+ + GK G+TN+I+ + ++ + +
Sbjct: 93 -HMIYVQGKQTGTTNVILFDSAMKQIGVLDVEVVIDTGN 130
>gi|261251281|ref|ZP_05943855.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio orientalis CIP 102891]
gi|260938154|gb|EEX94142.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio orientalis CIP 102891]
Length = 441
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
P S + + G + + V V + +I D ++ K VV+ G GST++
Sbjct: 17 ALPSYASQLMSLDQGAAKTINLKRQIATVFVANQQIADYKIIDDNK-VVVYGVGQGSTSV 75
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRVYTPG 116
IV + + + E+ ++R+
Sbjct: 76 IVYDRGGNEIYNAELVV----NQSLRLLKQT 102
>gi|145219384|ref|YP_001130093.1| type II and III secretion system protein [Prosthecochloris
vibrioformis DSM 265]
gi|145205548|gb|ABP36591.1| type II and III secretion system protein [Chlorobium
phaeovibrioides DSM 265]
Length = 472
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 6/94 (6%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
I A P + VG+S + + + K+V VG+ ++ D + L
Sbjct: 19 AALLSSIAPVAGLAAPSTYF----VPVGESRVYRLEQPIKRVAVGNPEVADYIML-NSSE 73
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFANE 106
+ + GK G+TN+I+ T + N
Sbjct: 74 LYLLGKKTGATNLILWNQQGK-FTSTLLQVSRNS 106
>gi|153008059|ref|YP_001369274.1| type II and III secretion system protein [Ochrobactrum anthropi
ATCC 49188]
gi|151559947|gb|ABS13445.1| type II and III secretion system protein [Ochrobactrum anthropi
ATCC 49188]
Length = 507
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
S I++ + +S++L V+V + I D + + + + GK +G TNI V G N
Sbjct: 48 SQTIKLGLNKSVVLDLPQDAYDVLVSNPTIADAVT-RTSRRIYLFGKQVGQTNIFVFGPN 106
Query: 92 NDILLDTEIATFANEQS 108
+ + ++ +
Sbjct: 107 GEQVASIDVEIERDVSG 123
>gi|90406750|ref|ZP_01214943.1| RhcC2 protein [Psychromonas sp. CNPT3]
gi|90312203|gb|EAS40295.1| RhcC2 protein [Psychromonas sp. CNPT3]
Length = 459
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + + + Q+ +L K + + D++ D L K ++I GK +GST++ VL
Sbjct: 17 SAQAKTLNVTLDQAKLLVLPKTAKSIFIASDRVADYQTLTNTK-IMIFGKRVGSTSLYVL 75
Query: 89 GHNNDILLDTEIATFAN 105
+++ + N
Sbjct: 76 DARENVIYSATVKVNHN 92
>gi|254561621|ref|YP_003068716.1| pilus assembly protein [Methylobacterium extorquens DM4]
gi|254268899|emb|CAX24860.1| putative pilus assembly protein; putative precursor
[Methylobacterium extorquens DM4]
Length = 502
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 43/115 (37%), Gaps = 9/115 (7%)
Query: 11 NETVRKKGIPTTASQKTPEDNSN----RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLA 66
+ G+ + T N R+ ++ G+SLI+ K+V V + + +
Sbjct: 27 GPASAQAGLSGASPVLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVANA-V 85
Query: 67 LEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFL 121
+ + + + G + G+T+I V+ + ++ + + V L
Sbjct: 86 VRSSRKLFLIGIDNGATSIFVMDGEGRQIAALDVTIARD----INVLRQSLQQSL 136
>gi|304320647|ref|YP_003854290.1| putative exporter protein, cpaC [Parvularcula bermudensis HTCC2503]
gi|303299549|gb|ADM09148.1| putative exporter protein, cpaC [Parvularcula bermudensis HTCC2503]
Length = 494
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 7 REIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLA 66
++ ET G AS++ + + +G++ I++ +IV D IV+
Sbjct: 34 TPLEFETTYDAGGNGLASRE--------VLLPLGKAAIIELPRPATDIIVSDPDIVEA-V 84
Query: 67 LEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVR 111
+ + V + G+ G N N+ +L+ EI + T+R
Sbjct: 85 IRTPQRVFLMGREAGQANAFFFDRANNQILNLEIRVE-QDADTIR 128
>gi|220922779|ref|YP_002498081.1| type II and III secretion system protein [Methylobacterium nodulans
ORS 2060]
gi|219947386|gb|ACL57778.1| type II and III secretion system protein [Methylobacterium nodulans
ORS 2060]
Length = 494
Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
P + D S RI + G+SL++ K+V V + K+ + + + V I G
Sbjct: 41 PVLSVGPQEADISRRIDLTQGRSLVVDLPRDAKEVFVANPKVANA-VVRSTRKVFIIGVE 99
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFL 121
G+T+I V+ + ++ + + V S +
Sbjct: 100 NGATSIFVMDAEGRQIAALDVTVGRD----LNVLRQTLASSI 137
>gi|307943145|ref|ZP_07658490.1| type II and III secretion system protein [Roseibium sp. TrichSKD4]
gi|307773941|gb|EFO33157.1| type II and III secretion system protein [Roseibium sp. TrichSKD4]
Length = 482
Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 12/107 (11%)
Query: 16 KKGIPTTASQKTP-----------EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDV 64
G+P A+ + +S + + VG+S+I+ V+V + + D
Sbjct: 30 LAGVPEPAAAQGAFEKRVHVASGERVSSRLLSVGVGRSVIIDTAEAVADVLVSNPGVADA 89
Query: 65 LALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVR 111
+ + + G G N+++ L + + VR
Sbjct: 90 -VVRTPNRIFVLGNKAGQANLVLFSRTGRELASFNLRVEPDTSDLVR 135
>gi|254780727|ref|YP_003065140.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040404|gb|ACT57200.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 474
Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 33 NRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNN 92
+I I + + +ILQ V + V+V D DV + +T+ + GKN+G N+I++GH+
Sbjct: 48 KKISIGLNKVIILQVPVDVQDVLVSDPTKADV-VVHSPRTMYLFGKNVGQANVILIGHDG 106
Query: 93 DILLDTEIATFAN 105
+L+ +I +
Sbjct: 107 KQMLNLDILIERD 119
>gi|37676253|ref|NP_936649.1| rough colony protein RcpA [Vibrio vulnificus YJ016]
gi|326424174|ref|NP_762071.2| type II/IV secretion system secretin RcpA/CpaC [Vibrio vulnificus
CMCP6]
gi|37200794|dbj|BAC96619.1| rough colony protein RcpA [Vibrio vulnificus YJ016]
gi|319999557|gb|AAO07061.2| Type II/IV secretion system secretin RcpA/CpaC, associated with Flp
pilus assembly [Vibrio vulnificus CMCP6]
Length = 441
Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+++ + + G + + V VG +I D +++ K VV+ G LG+T++IV
Sbjct: 21 NSNELMNLNQGSAKTISLKRQISTVFVGAPEIADYKIIDETK-VVVYGVGLGATSVIVYD 79
Query: 90 HNNDILLDTEIATFANEQSTVRVYTPG 116
+ L + E+ ++R+
Sbjct: 80 RAGNELYNAEVVVNK----SLRLVKQT 102
>gi|92116013|ref|YP_575742.1| type II and III secretion system protein [Nitrobacter hamburgensis
X14]
gi|91798907|gb|ABE61282.1| type II and III secretion system protein [Nitrobacter hamburgensis
X14]
Length = 486
Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Query: 14 VRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTV 73
V A+ + ++ + + +G+S+++ K V+V D KI + + +
Sbjct: 35 VFASDYRVPAATAGAKMHAQSLSLGIGKSVVVDLPRDVKDVLVADPKIANA-VVRSAQRA 93
Query: 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
I G +G TNII + + +IA +
Sbjct: 94 YIIGAAVGQTNIIFFDGSGQQISAYDIAVTRD 125
>gi|218458719|ref|ZP_03498810.1| pilus assembly secretion protein [Rhizobium etli Kim 5]
Length = 258
Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
+T D R+++ + +++++ ++V D + D + + + + GK +G TN
Sbjct: 50 AQTGPDAHRRLKLGLNKAVVVDLPEDAHDILVSDPSMADAVT-RTSRRIYLFGKKVGQTN 108
Query: 85 IIVLGHNNDILLDTEIATFANEQS 108
I V G +++ +I +
Sbjct: 109 IFVFGAGGQEIINLDIEIERDVSG 132
>gi|296444395|ref|ZP_06886360.1| type II and III secretion system protein [Methylosinus
trichosporium OB3b]
gi|296258042|gb|EFH05104.1| type II and III secretion system protein [Methylosinus
trichosporium OB3b]
Length = 485
Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+ S R+ + VG+S+I+ +++VG+ K+ + + + + I G G T I
Sbjct: 39 SDAIMSRRVAMGVGKSIIVDLPADAAEIVVGNPKVANA-VVRSTRKLYIMGVETGQTTIF 97
Query: 87 VLGHNNDILLDTEIATFANEQ 107
L + + + EI+ +
Sbjct: 98 ALDRSGRQIANLEISIGRDVG 118
>gi|254506218|ref|ZP_05118362.1| general secretion pathway protein D [Vibrio parahaemolyticus 16]
gi|219551036|gb|EED28017.1| general secretion pathway protein D [Vibrio parahaemolyticus 16]
Length = 431
Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+ + G++ + V + D +I D ++K K +VI GK +G+ +++ N++
Sbjct: 11 LMNLGEGEAKAINTKAEIASVFISDPQIADYQVVDKNK-LVIFGKKVGTVSLLAFDDNSE 69
Query: 94 ILLDTEIATFANEQSTVRVYTPGT 117
++ ++ QS + +
Sbjct: 70 TIISRKLVV---NQSLIHIQQQVQ 90
>gi|222147182|ref|YP_002548139.1| component of type IV pilus [Agrobacterium vitis S4]
gi|221734172|gb|ACM35135.1| component of type IV pilus [Agrobacterium vitis S4]
Length = 525
Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 12/85 (14%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
+Q P + +++ + +++++ ++V D ++ D + + + + GK +G T
Sbjct: 56 AQTGPGVRRD-LKLGLNKAIVVDLPEDAHDILVADPELADAVT-RTSRRIYLFGKKVGQT 113
Query: 84 NIIVLGHNNDILLDTEIATFANEQS 108
NI + G + ++ ++ + +
Sbjct: 114 NIFIFGADGREIVSLDLQIERDIEG 138
>gi|325291659|ref|YP_004277523.1| component of type IV pilus [Agrobacterium sp. H13-3]
gi|325059512|gb|ADY63203.1| component of type IV pilus [Agrobacterium sp. H13-3]
Length = 527
Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
R+++ + ++L++ ++V D + D + K + + GK +G TNI + G
Sbjct: 63 RKRLKLGLNKALVIDLPEDAHDILVADPSLADAVT-RTSKRIYLFGKTVGQTNIFIFGDG 121
Query: 92 NDILLDTEIATFAN 105
++ ++ +
Sbjct: 122 GREIVSLDLEVERD 135
>gi|209886530|ref|YP_002290387.1| type II and III secretion system protein [Oligotropha
carboxidovorans OM5]
gi|209874726|gb|ACI94522.1| type II and III secretion system protein [Oligotropha
carboxidovorans OM5]
Length = 486
Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
N+ +R+ + +SL++ K V+V D KI + + + I G ++G TNII
Sbjct: 47 NARALRLGISKSLVVDLPRDVKDVLVADPKIANA-VVRSSRRAYIIGASVGQTNIIFFDA 105
Query: 91 NNDILLDTEIATFAN 105
+ + ++A +
Sbjct: 106 DGQQMAAYDVAVTRD 120
>gi|315497465|ref|YP_004086269.1| type II and iii secretion system protein [Asticcacaulis excentricus
CB 48]
gi|315415477|gb|ADU12118.1| type II and III secretion system protein [Asticcacaulis excentricus
CB 48]
Length = 476
Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 5/107 (4%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
P T +T + + +A G+S ++ V V V + + D L + + + G
Sbjct: 38 PMTVQTQTSGARTQVLNLAKGRSAVVDLPVDAADVFVSNPAVADA-VLRTPRRIFVLGVA 96
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQ---STV-RVYTPGTLSFLS 122
G ++ I +L+ +I + TV ++Y + S
Sbjct: 97 AGQSDAIFFDATGRQILNLQIRVGVSTDQLSDTVQKLYPQSDVQVQS 143
>gi|241207157|ref|YP_002978253.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240861047|gb|ACS58714.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 499
Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 14/83 (16%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+T + R+++ + +++++ ++V D + D + + + + GK +G TNI
Sbjct: 51 QTGSNAHRRLKLGLNKAVVVDLPEDAHDILVSDPTMADAVT-RTSRRIYLFGKKVGQTNI 109
Query: 86 IVLGHNNDILLDTEIATFANEQS 108
V G +++ +I +
Sbjct: 110 FVFGAGGQEIVNLDIEIERDVSG 132
>gi|312883308|ref|ZP_07743034.1| Flp pilus assembly protein [Vibrio caribbenthicus ATCC BAA-2122]
gi|309368924|gb|EFP96450.1| Flp pilus assembly protein [Vibrio caribbenthicus ATCC BAA-2122]
Length = 440
Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ + I + + V + + I D ++ K +VI G +GST++IV G
Sbjct: 26 SAAEILNIDQDSAKTINLKNSISTVFLVNPTIADYKIIDDNK-LVIFGVGVGSTSVIVYG 84
Query: 90 HNNDILLDTEIATFANEQSTVRVYTPG 116
+ +TE+ ++R+
Sbjct: 85 KGGSEIYNTELIVNK----SLRLLKQT 107
>gi|227326302|ref|ZP_03830326.1| hypothetical protein PcarcW_02904 [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 479
Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
T T A+ + ++ +R+ V Q +L + LP V+V D I L
Sbjct: 34 TTMMLPATTLAAGVSVAPVTDEVRLTVNQGRLLHLNALPDSVLVADPNIASFE-LPSPGN 92
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ + K++G+T + + N +++ + + +
Sbjct: 93 LFVYAKSVGTTTLYAMDENGNVINAIRLVSEHD 125
>gi|116249981|ref|YP_765819.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115254629|emb|CAK05703.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 501
Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 14/83 (16%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+T + R+++ + +++++ ++V D + D + + + + GK +G TNI
Sbjct: 53 QTGSNAHRRLKLGLNKAVVVDLPEDAHDILVSDPTMADAVT-RTSRRIYLFGKKVGQTNI 111
Query: 86 IVLGHNNDILLDTEIATFANEQS 108
V G +++ +I +
Sbjct: 112 FVFGAGGQEIVNLDIEIERDVSG 134
>gi|91977985|ref|YP_570644.1| type II and III secretion system protein [Rhodopseudomonas
palustris BisB5]
gi|91684441|gb|ABE40743.1| type II and III secretion system protein [Rhodopseudomonas
palustris BisB5]
Length = 480
Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 1/96 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
T A N+ + + +G+S+++ K V+V D KI + + + I G +
Sbjct: 43 TPARMGNSGLNARPLALGIGKSVVIDLPRDIKDVLVADPKIANA-VVRSAQRAYIIGAAV 101
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPG 116
G TNI+ + +IA +
Sbjct: 102 GQTNIVFFDSTGQQIAAYDIAVTRDLNGIRTALRQS 137
>gi|307944371|ref|ZP_07659712.1| putative type III secretion component [Roseibium sp. TrichSKD4]
gi|307772717|gb|EFO31937.1| putative type III secretion component [Roseibium sp. TrichSKD4]
Length = 411
Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+ + + I + G ++L+F+ V +G ++I +V A+ EK + ++G G+TN++
Sbjct: 15 SSSNAAPPINLTKGFGILLRFNEPVASVFIGSNEIAEVQAV-NEKAIYVSGLTAGTTNLL 73
Query: 87 VLGHNNDILLDTEIAT 102
V+ ++NDI+ I
Sbjct: 74 VMNYDNDIIRSHAIVV 89
>gi|75674499|ref|YP_316920.1| type II and III secretion system protein [Nitrobacter winogradskyi
Nb-255]
gi|74419369|gb|ABA03568.1| type II and III secretion system protein [Nitrobacter winogradskyi
Nb-255]
Length = 493
Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
A+ ++ + + +G+S+++ K V+V D KI + + + I G +G
Sbjct: 45 AATAGANMHAQSLSLGIGKSVVVDLPRDVKDVLVADPKIANA-VVRSAQRAYIIGAAVGQ 103
Query: 83 TNIIVLGHNNDILLDTEIATFANEQSTVRVYTPG 116
TNII + + +IA +
Sbjct: 104 TNIIFFDSSGQQISAYDIAVTRDLNGLRTALKQL 137
>gi|134295595|ref|YP_001119330.1| type II and III secretion system protein [Burkholderia
vietnamiensis G4]
gi|134138752|gb|ABO54495.1| type II and III secretion system protein [Burkholderia
vietnamiensis G4]
Length = 443
Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL--EKEKTVVITGKNLGST 83
+ S I +AVG + ++V VGD I DVL + + +V++T K G+T
Sbjct: 18 ASMASASGTIELAVGAQRQIAAGRALQRVAVGDPAIADVLIMKGSRAGSVLLTAKAPGTT 77
Query: 84 NIIVLGHNNDILLDTEIATFANEQSTV 110
N++V +D + V
Sbjct: 78 NVMVWERGHDEPTVWNVEVVDAAAQAV 104
>gi|227823971|ref|YP_002827944.1| pilus assembly protein CpaC, contains signal peptide [Sinorhizobium
fredii NGR234]
gi|227342973|gb|ACP27191.1| pilus assembly protein CpaC, contains signal peptide [Sinorhizobium
fredii NGR234]
Length = 515
Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
T + ++ ++ + + +++++ ++V D + D + +
Sbjct: 32 TAQAAASSVVRIVESGPGVKRKVNLGLNKAVVVDLPTDAHDILVADPVLADAVT-RTSRR 90
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQS 108
+ + GK +G TNI V G N + ++ E+A +
Sbjct: 91 IYLFGKTVGQTNIFVFGPNGEEIVSLEVAVERDVAG 126
>gi|148974885|ref|ZP_01811865.1| rough colony protein RcpA [Vibrionales bacterium SWAT-3]
gi|145965394|gb|EDK30643.1| rough colony protein RcpA [Vibrionales bacterium SWAT-3]
Length = 441
Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
+A P S + + G + + V V + +I D +++ K VV+ G G
Sbjct: 13 SAILSCPLLASELMNLDQGAAKTINLKRQISTVFVANQEIADYKIIDENK-VVVYGVGQG 71
Query: 82 STNIIVLGHNNDILLDTEIATFANEQSTVRVYTPG 116
+T++IV + + + E+ ++R+
Sbjct: 72 TTSVIVYDRGGNEIYNAELVV----NQSLRLLKQT 102
>gi|294012433|ref|YP_003545893.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
UT26S]
gi|292675763|dbj|BAI97281.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
UT26S]
Length = 499
Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 20 PTTASQKTPEDNSN-RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK 78
PT+A P + I ++VG S ++ V++GD +VDV + + + + K
Sbjct: 31 PTSALNAAPASMQDNAILLSVGGSKVINLPAKMSDVVIGDPDVVDVH-VRSQNQLYLIAK 89
Query: 79 NLGSTNIIVLGHNNDILLDTEIAT 102
G T + N +L +
Sbjct: 90 KAGETTVFATATNGKVLFSGTVRV 113
>gi|194335913|ref|YP_002017707.1| type II and III secretion system protein [Pelodictyon
phaeoclathratiforme BU-1]
gi|194308390|gb|ACF43090.1| type II and III secretion system protein [Pelodictyon
phaeoclathratiforme BU-1]
Length = 510
Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+ + + +G+S + +F K+V +GD K+ D + L + + V + GK +GSTN+
Sbjct: 49 SEMTAPSIYLVPLGESRVYRFAQPIKRVAMGDPKVADYIMLNRFE-VYLLGKKMGSTNLA 107
Query: 87 VLGHNNDILLDTEIATFANEQS 108
V N + L + + +
Sbjct: 108 VWDQNGN-LTSSPVQVSRGTTA 128
>gi|308050059|ref|YP_003913625.1| type II and III secretion system protein [Ferrimonas balearica DSM
9799]
gi|307632249|gb|ADN76551.1| type II and III secretion system protein [Ferrimonas balearica DSM
9799]
Length = 487
Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + +S + ++V VG+ I D+L + K + I G+ LGSTNI+V + +
Sbjct: 48 FPVPIHKSKTMSLANAAERVSVGNPAIADILLI-NPKELYILGRQLGSTNIMVWDDQDRL 106
Query: 95 --LLDTEIA 101
++D EI
Sbjct: 107 VDIVDIEIT 115
>gi|149912019|ref|ZP_01900613.1| putative membrane protein [Moritella sp. PE36]
gi|149804918|gb|EDM64952.1| putative membrane protein [Moritella sp. PE36]
Length = 473
Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + + + ++ +++ K + + I D L K +++ GK GST++ VL
Sbjct: 25 AQTLDVVLNKARLIELPKTAKSIFIASSSIADYQTLTNTK-IMVFGKKTGSTSLYVLDAK 83
Query: 92 NDILLDTEIATFAN 105
+++ + N
Sbjct: 84 ENVIYSATVKVSHN 97
>gi|86144318|ref|ZP_01062650.1| Flp pilus assembly protein [Vibrio sp. MED222]
gi|85837217|gb|EAQ55329.1| Flp pilus assembly protein [Vibrio sp. MED222]
Length = 441
Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
P S + + G + + V V + +I D +++ K VV+ G G+T++IV
Sbjct: 19 PLLASELMNLDQGAAKTINLKRQISTVFVANQEIADYKIIDENK-VVVYGVGQGTTSVIV 77
Query: 88 LGHNNDILLDTEIATFANEQSTVRVYTPG 116
+ + + E+ ++R+
Sbjct: 78 YDRGGNEIYNAELVV----NQSLRLLKQT 102
>gi|86355864|ref|YP_467756.1| pilus assembly secretion protein [Rhizobium etli CFN 42]
gi|86279966|gb|ABC89029.1| pilus assembly secretion protein [Rhizobium etli CFN 42]
Length = 498
Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+T D R+++ + +++++ ++V D + D + + + + GK +G TNI
Sbjct: 50 QTGPDAHRRLKLGLNKAVVVDLPEDAHDILVSDPTMADAVT-RTSRRIYLFGKKVGQTNI 108
Query: 86 IVLGHNNDILLDTEIATFANEQS 108
V G +++ +I +
Sbjct: 109 FVFGAGGQEVVNLDIEIERDVSG 131
>gi|46204251|ref|ZP_00050268.2| COG4964: Flp pilus assembly protein, secretin CpaC
[Magnetospirillum magnetotacticum MS-1]
Length = 472
Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 17/102 (16%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
P + + S R+ ++ G+SLI+ K+V V + + + + + + + G
Sbjct: 37 PRSDDRAERSGQSRRVELSKGRSLIVDLPRDAKEVFVANPAVANA-VVRSSRKLFLIGIE 95
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFL 121
G+T+I V+ + ++ + + V L
Sbjct: 96 NGATSIFVMDAEGRQIAALDVTIARD----INVLRQSLQQSL 133
>gi|121534343|ref|ZP_01666167.1| type II and III secretion system protein [Thermosinus
carboxydivorans Nor1]
gi|121307113|gb|EAX48031.1| type II and III secretion system protein [Thermosinus
carboxydivorans Nor1]
Length = 408
Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
++ + +AV QS +L F ++V V + +I DVL + + +V+ GK G T +
Sbjct: 20 AATALANDILTVAVNQSRVLGFSG-VQRVAVANPEIADVLVVSGTEVLVV-GKAPGLTTM 77
Query: 86 IVLGHNNDILLDTEIAT 102
V + E+
Sbjct: 78 HVWTEAGRATYEVEVGV 94
>gi|269966892|ref|ZP_06180965.1| Flp pilus assembly protein [Vibrio alginolyticus 40B]
gi|269828559|gb|EEZ82820.1| Flp pilus assembly protein [Vibrio alginolyticus 40B]
Length = 487
Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
+ + + +A QS L K+V +GD +++D+L L + + + GK LG+
Sbjct: 17 SVNAATAQSGKVVTVAHHQSTQLMISGQAKKVTLGDPEVLDILVLRSNE-LFLIGKKLGT 75
Query: 83 TNIIVLGHNNDILLDTEIATFAN 105
TN+ V ++ + +
Sbjct: 76 TNVSVWDRRGRLIEQFNVEVTHD 98
>gi|170740621|ref|YP_001769276.1| type II and III secretion system protein [Methylobacterium sp.
4-46]
gi|168194895|gb|ACA16842.1| type II and III secretion system protein [Methylobacterium sp.
4-46]
Length = 501
Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 5/112 (4%)
Query: 10 KNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEK 69
+ E P + + + RI + G+SL++ K+V V + K+ + +
Sbjct: 44 RAEKAPAIAAPVLSIGPQEAEIARRIDLTQGRSLVIDLPRDAKEVFVANPKVANA-VVRS 102
Query: 70 EKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFL 121
+ V I G G+T+I V+ + ++ + + + + L
Sbjct: 103 TRKVFIIGVENGATSIFVMDAEGRQIASLDVTVGRD----LNILRQTLATSL 150
>gi|329847253|ref|ZP_08262281.1| bacterial type II and III secretion system family protein
[Asticcacaulis biprosthecum C19]
gi|328842316|gb|EGF91885.1| bacterial type II and III secretion system family protein
[Asticcacaulis biprosthecum C19]
Length = 535
Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 3/105 (2%)
Query: 12 ETVRKKGIPTTASQ-KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKE 70
+++ G A Q +T + +R+ G+S ++ V V + + D L
Sbjct: 38 NSLKSGGGGGMAVQTQTSQARVQVLRLPKGRSAVVDLPTDAADVFVSNPAVADA-VLRTP 96
Query: 71 KTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQS-TVRVYT 114
+ + + G G ++ I +L+ I A T V+
Sbjct: 97 RRIFVLGVEGGQSDAIFFDAQGRQILNLSIRVEAATDELTDTVHR 141
>gi|294139870|ref|YP_003555848.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12]
gi|293326339|dbj|BAJ01070.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12]
Length = 442
Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+ + + ++ ++Q K + + + I D AL K +++ GK G+T++ VL + +
Sbjct: 2 TLAVTLNKAELVQLPKTAKSIFISSNTIADYQALTNTK-IMVFGKRAGTTSLYVLDADEN 60
Query: 94 ILLDTEIATFAN 105
++ + N
Sbjct: 61 VIYSASVKVSHN 72
>gi|50119734|ref|YP_048901.1| hypothetical protein ECA0789 [Pectobacterium atrosepticum SCRI1043]
gi|49610260|emb|CAG73703.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043]
Length = 478
Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
T T A+ + +N + + V Q +LQ D LP V+V D I L
Sbjct: 34 TTMMLPATTMAAGVSEVAETNVVHLTVHQGRLLQLDALPDSVLVADPNIASFE-LPSPGN 92
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ + K++G+T + + N +++ + + +
Sbjct: 93 LFVYAKSVGTTTLYAMDENGNVINAIRLVSEHD 125
>gi|220922532|ref|YP_002497834.1| type II and III secretion system protein [Methylobacterium nodulans
ORS 2060]
gi|219947139|gb|ACL57531.1| type II and III secretion system protein [Methylobacterium nodulans
ORS 2060]
Length = 479
Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
+A R+R+ V +S ++ +++G KI +V+ L +T+ I GK +G
Sbjct: 4 SAPAAGETITVTRVRVPVNKSQTMRVVAPFSDILIGASKIAEVIPLSD-QTLYILGKEVG 62
Query: 82 STNIIVLGHNNDILLDTEIATFANEQS 108
+TN+ ++ N ++ ++ + +
Sbjct: 63 TTNVSLVDANKKVIGVVDVEVGLDAGN 89
>gi|15887573|ref|NP_353254.1| component of type IV pilus [Agrobacterium tumefaciens str. C58]
gi|15155110|gb|AAK86039.1| component of type IV pilus [Agrobacterium tumefaciens str. C58]
Length = 527
Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
R+++ + ++L++ ++V D + D + + + + GK +G TNI + G
Sbjct: 63 RKRLKLGLNKALVIDLPEDAHDILVADPSLADAVT-RTSRRIYLFGKMVGQTNIFIFGDG 121
Query: 92 NDILLDTEIATFAN 105
++ ++ +
Sbjct: 122 GREIVSLDLEVERD 135
>gi|21673269|ref|NP_661334.1| type II secretion system protein [Chlorobium tepidum TLS]
gi|21646357|gb|AAM71676.1| type II secretion system protein [Chlorobium tepidum TLS]
Length = 445
Score = 53.5 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 40 GQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
G+S + + V K+V VGD I D + + + + ++GK G+TN+IV G N +
Sbjct: 16 GESRVYRLAVPAKRVAVGDPAIADFIMISPSE-LYLSGKKTGATNLIVWGKNGN 68
>gi|188581660|ref|YP_001925105.1| type II and III secretion system protein [Methylobacterium populi
BJ001]
gi|179345158|gb|ACB80570.1| type II and III secretion system protein [Methylobacterium populi
BJ001]
Length = 502
Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 44/117 (37%), Gaps = 9/117 (7%)
Query: 9 IKNETVRKKGIPTTAS----QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDV 64
+ + G+P + S ++ ++ G+SLI+ K+V V + + +
Sbjct: 25 LSGPASAQPGLPGASPVLTIGPNETAVSRKVELSKGRSLIIDLPRDAKEVFVANPAVANA 84
Query: 65 LALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFL 121
+ + + + G + G+T+I V+ + ++ + + V L
Sbjct: 85 -VVRSSRKLFLIGIDNGATSIFVMDAEGRQIAALDVTIARD----INVLRQSLQQSL 136
>gi|323493934|ref|ZP_08099051.1| Flp pilus assembly protein [Vibrio brasiliensis LMG 20546]
gi|323311875|gb|EGA65022.1| Flp pilus assembly protein [Vibrio brasiliensis LMG 20546]
Length = 441
Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
P S + + G + + V V + +I D +++ K VV+ G GST++IV
Sbjct: 19 PSYASQLMSLDQGAAKTINLKRQIATVFVANQQIADYKIIDENK-VVVYGVGQGSTSVIV 77
Query: 88 LGHNNDILLDTEIATFANEQSTVRVYTPG 116
+ + + E+ ++R+
Sbjct: 78 YDRGGNEIYNAELVV----NQSLRLLKQT 102
>gi|299132286|ref|ZP_07025481.1| type II and III secretion system protein [Afipia sp. 1NLS2]
gi|298592423|gb|EFI52623.1| type II and III secretion system protein [Afipia sp. 1NLS2]
Length = 490
Score = 53.5 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
N+ +R+ + +SL++ K V+V D KI + + + I G +G TNII
Sbjct: 53 NARSLRLGISKSLVVDLPRDVKDVLVADPKIANA-VVRSSRRAYIIGAAVGQTNIIFFDA 111
Query: 91 NNDILLDTEIATFAN 105
+ + ++A +
Sbjct: 112 DGQQMAAYDVAVTRD 126
>gi|218530654|ref|YP_002421470.1| type II and III secretion system protein [Methylobacterium
chloromethanicum CM4]
gi|218522957|gb|ACK83542.1| type II and III secretion system protein [Methylobacterium
chloromethanicum CM4]
Length = 499
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 44/117 (37%), Gaps = 9/117 (7%)
Query: 9 IKNETVRKKGIPTTASQKTPEDNSN----RIRIAVGQSLILQFDVLPKQVIVGDDKIVDV 64
+ + G+ + T N R+ ++ G+SLI+ K+V V + + +
Sbjct: 25 LSGPASAQAGLSGASPVLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVANA 84
Query: 65 LALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFL 121
+ + + + G + G+T+I V+ + ++ + + V L
Sbjct: 85 -VVRSSRKLFLIGIDNGATSIFVMDGEGRQIAALDVTIARD----INVLRQSLQLSL 136
>gi|85713505|ref|ZP_01044495.1| type II and III secretion system protein [Nitrobacter sp. Nb-311A]
gi|85699409|gb|EAQ37276.1| type II and III secretion system protein [Nitrobacter sp. Nb-311A]
Length = 477
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 14 VRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTV 73
V +A+ + ++ + + +G+S+++ K V+V D KI + + +
Sbjct: 13 VFASDYRVSAATTGAKMHTQSLSLGIGKSVVVDLPRDVKDVLVADPKIANA-VVRSAQRA 71
Query: 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
I G +G TNII + + +IA +
Sbjct: 72 YIIGAAVGQTNIIFFDSSGQQISAYDIAVTRD 103
>gi|253687068|ref|YP_003016258.1| type II and III secretion system protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251753646|gb|ACT11722.1| type II and III secretion system protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 478
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
T T A+ + ++ + + V Q +LQ P V+V D I L
Sbjct: 34 TTMMLPATTLAAGVSTAPITDEVHLTVNQGRLLQLADTPDSVLVADPNIASFE-LPSPGN 92
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ + K++G T + + N +++ + + +
Sbjct: 93 LFVYAKSVGVTTLYAMDENGNVINAIRLVSEHD 125
>gi|283787693|ref|YP_003367558.1| tight adherence secretin RcpA [Citrobacter rodentium ICC168]
gi|282951147|emb|CBG90838.1| putative tight adherence secretin RcpA [Citrobacter rodentium
ICC168]
Length = 482
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ + + GQS F + + D ++ D + K +++ KN G+T++IV G
Sbjct: 31 AAAGALYMKHGQSRNFHFTGDLDTIFISDPRVADYKVV-NNKNIIVYAKNTGTTDLIVYG 89
Query: 90 HNNDILLDTEIAT 102
NN +LL I+
Sbjct: 90 RNNTVLLKHSISV 102
>gi|254475652|ref|ZP_05089038.1| type II and III secretion system protein:Transport-associated
[Ruegeria sp. R11]
gi|214029895|gb|EEB70730.1| type II and III secretion system protein:Transport-associated
[Ruegeria sp. R11]
Length = 452
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + + ++++++ DV ++ + + I D+ +L +T+ + GK+ G + G +
Sbjct: 25 LEVPMNRAVVVESDVPFSELSIANPSIADISSLSD-RTIYVLGKSPGPDHPHAFGCVGRL 83
Query: 95 LLDTEIATFAN 105
+ + ++ A+
Sbjct: 84 ITNVDVRVAAD 94
>gi|294140774|ref|YP_003556752.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12]
gi|293327243|dbj|BAJ01974.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12]
Length = 484
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 10/88 (11%)
Query: 16 KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
K G PT AS + + I + +S IL +V VG+ I D+ L + V+
Sbjct: 28 KAGGPTGAS-------RDIMLIPIFKSRILNLKQTVHRVSVGNPNIGDIKLLPNNELYVL 80
Query: 76 TGKNLGSTNIIVLGHNNDI--LLDTEIA 101
GK LGSTNI++ N + ++D EI
Sbjct: 81 -GKKLGSTNIMIWDENERLVDVIDIEIT 107
>gi|115525749|ref|YP_782660.1| type II and III secretion system protein [Rhodopseudomonas
palustris BisA53]
gi|115519696|gb|ABJ07680.1| type II and III secretion system protein [Rhodopseudomonas
palustris BisA53]
Length = 486
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 41/105 (39%), Gaps = 7/105 (6%)
Query: 7 REIKNETVRKKGIPTTASQKTPEDNSN------RIRIAVGQSLILQFDVLPKQVIVGDDK 60
+ +++ +P A+ P + + + + +S+++ K V+V D K
Sbjct: 21 TAVAALSLQPAALPVIAADYRPAVANEGQMNAHFLALGISKSVVIDLPRDIKDVLVADPK 80
Query: 61 IVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
I + + I G ++G TNI+ + +IA +
Sbjct: 81 IATA-VIRSAQRAYIIGASVGQTNIVFFDAAGQQIAAYDIAVTRD 124
>gi|163751744|ref|ZP_02158962.1| Flp pilus assembly protein, secretin CpaC [Shewanella benthica
KT99]
gi|161328396|gb|EDP99555.1| Flp pilus assembly protein, secretin CpaC [Shewanella benthica
KT99]
Length = 484
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 16 KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
K G PT AS + ++I + +S I+ +V VG+ I D+ L + V+
Sbjct: 28 KAGGPTGAS-------RDIMQIPIFKSRIINLKHAVHRVSVGNPNIGDIKLLPNNELYVL 80
Query: 76 TGKNLGSTNIIVLGHNNDI--LLDTEIA 101
GK LGSTNI++ N + ++D EI
Sbjct: 81 -GKKLGSTNIMIWDENERLVDVIDIEIT 107
>gi|209809170|ref|YP_002264708.1| type II/III secretion system protein [Aliivibrio salmonicida
LFI1238]
gi|208010732|emb|CAQ81123.1| type II/III secretion system protein [Aliivibrio salmonicida
LFI1238]
Length = 445
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
I ++ G + + + V + D KI D + ++ +VI GK++GS+++++ G
Sbjct: 26 AVGIINMSEGGAKTISVEQDISSVFLSDPKIADYQVI-DKRKIVIYGKSIGSSSVLIFGE 84
Query: 91 NNDILLDTEIAT 102
+ L + +I
Sbjct: 85 KGNTLSNKKIMV 96
>gi|28899193|ref|NP_798798.1| putative pilus assembly transmembrane protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|153836824|ref|ZP_01989491.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810]
gi|260361569|ref|ZP_05774596.1| Flp pilus assembly protein [Vibrio parahaemolyticus K5030]
gi|260876726|ref|ZP_05889081.1| Flp pilus assembly protein [Vibrio parahaemolyticus AN-5034]
gi|260898195|ref|ZP_05906691.1| Flp pilus assembly protein [Vibrio parahaemolyticus Peru-466]
gi|260900397|ref|ZP_05908792.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ4037]
gi|28807417|dbj|BAC60682.1| putative pilus assembly transmembrane protein [Vibrio
parahaemolyticus RIMD 2210633]
gi|149749970|gb|EDM60715.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810]
gi|308089085|gb|EFO38780.1| Flp pilus assembly protein [Vibrio parahaemolyticus Peru-466]
gi|308091468|gb|EFO41163.1| Flp pilus assembly protein [Vibrio parahaemolyticus AN-5034]
gi|308109123|gb|EFO46663.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ4037]
gi|308114031|gb|EFO51571.1| Flp pilus assembly protein [Vibrio parahaemolyticus K5030]
gi|328474270|gb|EGF45075.1| pilus assembly protein CpaC [Vibrio parahaemolyticus 10329]
Length = 487
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
+ + + +A QS L K+V +GD +++D++ L + + + GK LG+
Sbjct: 17 SVHAATAQSGRVVSVAHHQSTQLVISGKAKKVTLGDPEVLDIVVLRSNE-LFLIGKKLGT 75
Query: 83 TNIIVLGHNNDILLDTEIATFAN 105
TN+ V ++ + +
Sbjct: 76 TNVSVWDSRGRLIEQFNVEVTHD 98
>gi|27376550|ref|NP_768079.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
gi|27349691|dbj|BAC46704.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
Length = 496
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
P + N+ + + VG+S+++ K V+V D KI + + + I G
Sbjct: 47 PAAPVAADGQMNARFLSLGVGKSIVIDLPRDIKDVLVADPKIANA-VVRSSQRAYIIGAA 105
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQST 109
+G TNI+ + +IA +
Sbjct: 106 VGQTNIVFFDSAGQQIAAYDIAVKRDLNGV 135
>gi|84385704|ref|ZP_00988735.1| rough colony protein RcpA [Vibrio splendidus 12B01]
gi|84379684|gb|EAP96536.1| rough colony protein RcpA [Vibrio splendidus 12B01]
Length = 447
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
P S + + G + + V V + +I D + K +VI G G+T+I
Sbjct: 18 ALPSYASELLSLDQGGAKTINIKRNIDTVFVANSQIADYKIIANGK-LVIYGIGRGATSI 76
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFL 121
I + + + E+ ++R+ ++
Sbjct: 77 IAYDRAGNEIYNAEVVVNK----SLRLLKQTLVARY 108
>gi|222084469|ref|YP_002542998.1| pilus assembly secretion protein [Agrobacterium radiobacter K84]
gi|221721917|gb|ACM25073.1| pilus assembly secretion protein [Agrobacterium radiobacter K84]
Length = 505
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+++ + ++L++ ++V D K+ D + + + + GK +G TNI V G N
Sbjct: 64 TLKLGLNKALVVDLPADAHDILVSDPKMADAVT-RTSRRIYLFGKTVGQTNIFVFGANGQ 122
Query: 94 ILLDTEIATFAN 105
++ ++ +
Sbjct: 123 EIVSLDLQIERD 134
>gi|197337022|ref|YP_002157812.1| general secretion pathway protein D [Vibrio fischeri MJ11]
gi|197314274|gb|ACH63723.1| general secretion pathway protein D [Vibrio fischeri MJ11]
Length = 440
Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
N I ++ G S ++ + V V D KI D +EK+K +V GK +G ++++V
Sbjct: 23 AGNIINMSEGDSQVILANKDVGSVFVSDPKIADYQVIEKKKVIVY-GKKIGQSSVMVFDR 81
Query: 91 NNDILLDTEIATFANEQS 108
N L + ++ + S
Sbjct: 82 NGHTLANKKVIVNKSLDS 99
>gi|170750189|ref|YP_001756449.1| type II and III secretion system protein [Methylobacterium
radiotolerans JCM 2831]
gi|170656711|gb|ACB25766.1| type II and III secretion system protein [Methylobacterium
radiotolerans JCM 2831]
Length = 546
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
P + + R+ + G+S+I+ K+V V + + + + + V + G
Sbjct: 52 PVLTVGAAEANTTRRVELTAGRSVIVDLPRDAKEVFVANPAVANA-VVRSTRKVFVIGMA 110
Query: 80 LGSTNIIVLGHNNDILLDTEIATFAN 105
G+T+I ++ + ++ +
Sbjct: 111 DGATSIFIMDAEGRQIAALDVTVARD 136
>gi|254229332|ref|ZP_04922749.1| putative phospholipid-binding domain family [Vibrio sp. Ex25]
gi|262393417|ref|YP_003285271.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio sp. Ex25]
gi|151938140|gb|EDN56981.1| putative phospholipid-binding domain family [Vibrio sp. Ex25]
gi|262337011|gb|ACY50806.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio sp. Ex25]
Length = 487
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
+ + + +A QS L K+V +GD +++D+L L + + + GK LG+
Sbjct: 17 SVNAATVQSGKVVTVAHHQSTQLMISGQAKKVTLGDPEVLDILVLRSNE-LFLIGKKLGT 75
Query: 83 TNIIVLGHNNDILLDTEIATFAN 105
TN+ V ++ + +
Sbjct: 76 TNVSVWDRRGRLIEQFNVEVTHD 98
>gi|224824213|ref|ZP_03697321.1| type II and III secretion system protein [Lutiella nitroferrum
2002]
gi|224603632|gb|EEG09807.1| type II and III secretion system protein [Lutiella nitroferrum
2002]
Length = 520
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 33/125 (26%)
Query: 15 RKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDK-------------- 60
R P+T + +++ + + VG+S L+ V ++++G+ +
Sbjct: 40 RLAATPSTVAPCNAIESAPLVNVTVGKSFRLKTPVPISRILLGNPEGSQAAQPKESTDAN 99
Query: 61 ---------------IVDVLA-LEKEKTVVITGKNLGSTNIIVLGHNND-ILLDTEIATF 103
+ DV L + + GK++GSTNII+LG N L+D +A
Sbjct: 100 ADKGKPSAGGSTKSGVADVDVILLSPSEIYLLGKSVGSTNIILLGRNGQCTLVD--VAVG 157
Query: 104 ANEQS 108
A+ S
Sbjct: 158 ADTAS 162
>gi|218516388|ref|ZP_03513228.1| pilus assembly secretion protein [Rhizobium etli 8C-3]
Length = 436
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 39 VGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDT 98
+ +++++ ++V D + D + + + + GK +G TNI V G +++
Sbjct: 1 MNKAVVVDLPEDAHDILVSDPSMADAVT-RTSRRIYLFGKKVGQTNIFVFGAGGQEIINL 59
Query: 99 EIATFANEQS 108
+I +
Sbjct: 60 DIEIERDVSG 69
>gi|218513620|ref|ZP_03510460.1| pilus subunit transmembrane protein [Rhizobium etli 8C-3]
Length = 44
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 98 TEIATFANEQSTVRVYTPGTLSFLSCTPRCLPSS 131
I +E +TVRVY S LSCTP C +
Sbjct: 1 ERILVSIDEGNTVRVYRQTERSVLSCTPNCEQHA 34
>gi|260771478|ref|ZP_05880403.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio furnissii CIP 102972]
gi|260613604|gb|EEX38798.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio furnissii CIP 102972]
gi|315181060|gb|ADT87974.1| Flp pilus assembly protein, secretin CpaC [Vibrio furnissii NCTC
11218]
Length = 489
Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 13/108 (12%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+ + + +S ++ +V +GD +++D++ L K + + GK LGSTN++
Sbjct: 20 AANQSGKVVTVPHHKSTYVKLQGAASRVSLGDPEVLDIVML-KADELFLIGKRLGSTNLM 78
Query: 87 VLGHNNDILLDTEIATFANEQS------------TVRVYTPGTLSFLS 122
+L I + S T+ V++ LS
Sbjct: 79 AWDRRGQLLESINIEVTHDVNSLKAKLYEFLPNETISVHSAQNRLILS 126
>gi|251789646|ref|YP_003004367.1| type II and III secretion system protein [Dickeya zeae Ech1591]
gi|247538267|gb|ACT06888.1| type II and III secretion system protein [Dickeya zeae Ech1591]
Length = 474
Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 16 KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
+ T + ++ IR+ + Q +LQ D +P V++ D I L V +
Sbjct: 26 LSATTLPVAAVTQIEATSEIRLNINQGRMLQLDHIPDSVLIADPAIASFE-LPSPGNVFV 84
Query: 76 TGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
K +G+T + + + ++ + +
Sbjct: 85 FAKGVGNTTLYAMDVDGQVVSAIHLVVEHD 114
>gi|217978832|ref|YP_002362979.1| type II and III secretion system protein [Methylocella silvestris
BL2]
gi|217504208|gb|ACK51617.1| type II and III secretion system protein [Methylocella silvestris
BL2]
Length = 530
Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Query: 12 ETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK 71
ET K + Q P R+ + +S + + +VG I DVL + +
Sbjct: 46 ETQPAKSQAGSTIQYEPAQVR-RVAVTRYKSRTFRMETPFSSAVVGSADIADVLPMSD-R 103
Query: 72 TVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGT 117
+ I GK +G+TN+ + + ++ ++ + Q+ GT
Sbjct: 104 VIYIQGKRVGTTNVSIFDKDKKLIGVIDLEVTLDIQNIAAKVRSGT 149
>gi|153848715|ref|ZP_01993991.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810]
gi|149744675|gb|EDM56143.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810]
Length = 132
Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
+ + + +A QS L K+V +GD +++D++ L + + + GK LG
Sbjct: 1 MSVHAATAQSGRVVSVAHHQSTQLVISGKAKKVTLGDPEVLDIVVLRSNE-LFLIGKKLG 59
Query: 82 STNIIVLGHNNDILLDTEIATFAN 105
+TN+ V ++ + +
Sbjct: 60 TTNVSVWDSRGRLIEQFNVEVTHD 83
>gi|116748930|ref|YP_845617.1| type II and III secretion system protein [Syntrophobacter
fumaroxidans MPOB]
gi|116697994|gb|ABK17182.1| type II and III secretion system protein [Syntrophobacter
fumaroxidans MPOB]
Length = 482
Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
T E + +I + VG+S+I++ + +G + D++AL + + ITGK
Sbjct: 32 AGPVKVVTGEHAARKIHLQVGKSVIVRSGAPVVRTTLGSPDVADIVALSPTQ-IYITGKA 90
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANE 106
G TN+ + ++ + +I +
Sbjct: 91 TGVTNLTLWQSDDKVSAIYDIEVAPDT 117
>gi|90425197|ref|YP_533567.1| type II and III secretion system protein [Rhodopseudomonas
palustris BisB18]
gi|90107211|gb|ABD89248.1| type II and III secretion system protein [Rhodopseudomonas
palustris BisB18]
Length = 492
Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
A+ + N+ + + V +S+++ K V+V D KI + + + I G +G
Sbjct: 42 MAAAADGQLNARFLALGVSKSVVIDLPRDIKDVLVADPKIANA-VVRSAQRAYIIGAAIG 100
Query: 82 STNIIVLGHNNDILLDTEIATFAN 105
TNI+ + +IA +
Sbjct: 101 QTNIVFFDAAGLQIAAYDIAVTRD 124
>gi|46580524|ref|YP_011332.1| type II/III secretion system protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|120602159|ref|YP_966559.1| type II and III secretion system protein [Desulfovibrio vulgaris
DP4]
gi|46449943|gb|AAS96592.1| type II/III secretion system protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|120562388|gb|ABM28132.1| type II and III secretion system protein [Desulfovibrio vulgaris
DP4]
gi|311234263|gb|ADP87117.1| type II and III secretion system protein [Desulfovibrio vulgaris
RCH1]
Length = 484
Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S+ +++A G+S ++ ++ + D+ I V+ L ++ V +TGK G+T + +
Sbjct: 38 AASSELQVATGKSSVVSTSRPVGRLAIADEAIAGVVVLSPQQ-VYVTGKKAGTTTLTLWD 96
Query: 90 HNNDILLDTEIATFAN 105
++ ++ +
Sbjct: 97 GGGAVIGVYDVQVTPD 112
>gi|218676249|ref|YP_002395068.1| Flp pilus assembly protein [Vibrio splendidus LGP32]
gi|218324517|emb|CAV25991.1| Flp pilus assembly protein [Vibrio splendidus LGP32]
Length = 446
Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
P S + + G + + V V + ++ D +++ K VV+ G G+T++IV
Sbjct: 24 PLLASELMNLDQGAAKTINLKRQISTVFVANQEVADYKIIDENK-VVVYGVGQGATSVIV 82
Query: 88 LGHNNDILLDTEIATFANEQSTVRVYTPG 116
+ + + E+ ++R+
Sbjct: 83 YDRGGNEIYNAELVV----NQSLRLLKQT 107
>gi|157375508|ref|YP_001474108.1| flp pilus assembly protein, secretin CpaC [Shewanella sediminis
HAW-EB3]
gi|157317882|gb|ABV36980.1| flp pilus assembly protein, secretin CpaC [Shewanella sediminis
HAW-EB3]
Length = 483
Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + I + +S +L+ +V VG+ I D+ L + V+ GK LGSTNI+V
Sbjct: 33 TGASRDIKHIPIFKSRVLKLKQAIHRVSVGNPNIGDIKLLPNNELYVL-GKKLGSTNIMV 91
Query: 88 LGHNNDILLD 97
N+ L+D
Sbjct: 92 WDK-NEQLVD 100
>gi|146338123|ref|YP_001203171.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. ORS278]
gi|146190929|emb|CAL74934.1| putative Pilus assembly protein cpaC; putative signal peptide
[Bradyrhizobium sp. ORS278]
Length = 500
Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
N+ + + VG+S+++ K V+V D KI + + + I G +G TNI+
Sbjct: 62 NARFLALGVGKSVVIDLPRDIKDVLVADPKIANA-VVRSSQRAYIIGAAVGQTNIVFFDA 120
Query: 91 NNDILLDTEIATFAN 105
+ +IA +
Sbjct: 121 QGQQIAAYDIAVKRD 135
>gi|59713403|ref|YP_206178.1| general secretion pathway protein D [Vibrio fischeri ES114]
gi|59481651|gb|AAW87290.1| general secretion pathway protein D [Vibrio fischeri ES114]
Length = 440
Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
N I ++ G S ++ + V V D KI D +EK+K +V GK +G ++++V
Sbjct: 23 AGNIINMSEGDSQVILANKDVGSVFVSDPKIADYQVIEKKKVIVY-GKKIGQSSVMVFDR 81
Query: 91 NNDILLDTEIATFANEQS 108
N L + ++ + S
Sbjct: 82 NGHTLANKKLIVNKSLDS 99
>gi|152989020|ref|YP_001350207.1| putative type II secretion system protein [Pseudomonas aeruginosa
PA7]
gi|150964178|gb|ABR86203.1| probable type II secretion system protein [Pseudomonas aeruginosa
PA7]
Length = 408
Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ +A GQ L+ V K++ +GD +I DV L++ +V TGK GST++++ +
Sbjct: 34 VSVAQGQQNDLRLAVPIKRLAIGDPQIADVQLLDRSSLLV-TGKEQGSTSLLIWTACSAE 92
Query: 95 LLDTEIATFANEQ 107
L +++A
Sbjct: 93 PLRSQVAVEGRGS 105
>gi|261820214|ref|YP_003258320.1| type II and III secretion system protein [Pectobacterium wasabiae
WPP163]
gi|261604227|gb|ACX86713.1| type II and III secretion system protein [Pectobacterium wasabiae
WPP163]
Length = 475
Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
T A+ + ++ + + V Q +L D LP V+V D I L + + KN
Sbjct: 38 ATQAAGVSVAPVTDEVHLTVHQGRLLHLDALPDSVLVADPNIASFE-LPSPGNLFVYAKN 96
Query: 80 LGSTNIIVLGHNNDILLDTEIATFAN 105
+G+T + + N ++ + + +
Sbjct: 97 VGTTTLYAMDENGKVINAIRLVSEHD 122
>gi|114568970|ref|YP_755650.1| type II and III secretion system protein [Maricaulis maris MCS10]
gi|114339432|gb|ABI64712.1| type II and III secretion system protein [Maricaulis maris MCS10]
Length = 491
Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
T R + + S + + + ++ ++ V V+V + +V+ + + +
Sbjct: 29 TERGNTMQVYIREPGNGPVSETLDLPLSKAAVVHLPVDVADVLVTNPAVVEAI-VRTPRR 87
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
I G +G TN N ++LD ++ +
Sbjct: 88 AYIMGMGIGQTNAFFFDANGQLILDLDLRVERD 120
>gi|172060495|ref|YP_001808147.1| type II and III secretion system protein [Burkholderia ambifaria
MC40-6]
gi|171993012|gb|ACB63931.1| type II and III secretion system protein [Burkholderia ambifaria
MC40-6]
Length = 461
Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL--EKEKTVVITGKNLGST 83
+ S I +AVG + ++V VGD I DVL + + +V++T K G+T
Sbjct: 36 ASIASASGTIELAVGAQRQISAGRALQRVAVGDPTIADVLIMKGSRSGSVLLTAKAPGAT 95
Query: 84 NIIVLGHNND 93
N+++ +D
Sbjct: 96 NVMLWERGHD 105
>gi|325518465|gb|EGC98164.1| pilus assembly protein [Burkholderia sp. TJI49]
Length = 429
Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 18/111 (16%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL--EKEKTVVITGKNLGST 83
+ S I +AVG + ++V VGD I DVL + + +V++T K G+T
Sbjct: 4 ASLASASGTIELAVGTQRQISAGRSLQRVAVGDPAIADVLIMKGSRSGSVLLTAKAPGAT 63
Query: 84 NII---------------VLGHNNDILLDTEIATFANEQSTVRVYTPGTLS 119
N++ V+ +LD N V + S
Sbjct: 64 NVMLWERGRDEPTVWSVEVVDAAAHAVLDDS-TPRVNAYGGTAVLRGTSAS 113
>gi|94497254|ref|ZP_01303826.1| type II and III secretion system protein [Sphingomonas sp. SKA58]
gi|94423359|gb|EAT08388.1| type II and III secretion system protein [Sphingomonas sp. SKA58]
Length = 486
Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 11 NETVRKKGIPTTA-SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEK 69
V +PT+A + T N I ++VG S ++ V++ D ++VDV +
Sbjct: 12 GLAVACAAVPTSALNAATSSMQDNAILLSVGGSRVINLPAKMSDVVIADPEVVDVH-VRS 70
Query: 70 EKTVVITGKNLGSTNIIVLGHNNDILLDTEIAT 102
+ + + K G T + N +L +
Sbjct: 71 QNQLYLIAKKAGETTVFATAPNGKVLFSGTVRV 103
>gi|218680971|ref|ZP_03528868.1| putative pilus assembly protein [Rhizobium etli CIAT 894]
Length = 434
Score = 51.2 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 36 RIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDIL 95
++ + +++++ ++V D + D + + + + GK +G TNI V G +
Sbjct: 1 KLGLNKAVVVDLPEDAHDILVSDPTMADAVT-RTSRRIYLFGKKVGQTNIFVFGAGGQEI 59
Query: 96 LDTEIATFANEQS 108
++ +I +
Sbjct: 60 VNLDIEIERDVSG 72
>gi|302037439|ref|YP_003797761.1| putative pilus assembly protein CpaC [Candidatus Nitrospira
defluvii]
gi|300605503|emb|CBK41836.1| putative Pilus assembly protein CpaC [Candidatus Nitrospira
defluvii]
Length = 485
Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 13 TVRKKGIPTTASQKTPEDNSNR---IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEK 69
+ + +P+ + + + G+SL+L + + + + I D L L
Sbjct: 21 ALFLVTVAQAHEVASPDIQTRVPRSLSLITGKSLVLDSPIPFSRASIANPDIADTLVL-S 79
Query: 70 EKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
K + + GK G+TN+ + + ++A +
Sbjct: 80 PKQLYVIGKAAGTTNLTLWDAEGSVYALYDLAVSPD 115
>gi|167841773|ref|ZP_02468457.1| type II/III secretion system protein [Burkholderia thailandensis
MSMB43]
Length = 484
Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND- 93
+ + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G +
Sbjct: 23 VSVPLGKSLLVPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGMSVGTTNMIVQGKSGAC 81
Query: 94 ILLDTEIATFANEQSTVRVYTPG 116
++D +A A+
Sbjct: 82 QIID--VAVGADADGLQTSLRQL 102
>gi|91788411|ref|YP_549363.1| type II and III secretion system protein [Polaromonas sp. JS666]
gi|91697636|gb|ABE44465.1| type II and III secretion system protein [Polaromonas sp. JS666]
Length = 514
Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 10 KNETVRKKGIPTTASQKTPEDNS--NRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL 67
+ T + K + T A +I ++ G+S +++ ++ VGD +IVDV+ L
Sbjct: 55 QAATAQPKAVVTQARAPITGKVELAPQINLSEGKSTLMRLPSPATRLSVGDARIVDVILL 114
Query: 68 EKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLS 122
+ + GK++GSTN+I+ N D I A TV + + F S
Sbjct: 115 -NPSELYMLGKSVGSTNLILWNKAN----DATIIDIAVGMDTVALRSRLEQMFAS 164
>gi|167574003|ref|ZP_02366877.1| type II/III secretion system protein [Burkholderia oklahomensis
C6786]
Length = 548
Score = 51.2 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 93 REATSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGLSVGTTNMIVQG 151
Query: 90 HNND-ILLDTEIATFANEQSTVRVYTPG 116
+ ++D +A A+
Sbjct: 152 RSGACQIID--VAVGADAGGLQTSLRQL 177
>gi|171921001|gb|ACB59184.1| RcpA [Actinobacillus suis ATCC 33415]
Length = 460
Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+ + + GQS +++ D V V I D L+ T ++ K G I+
Sbjct: 22 SHTAAAKTFTLEQGQSQLIKTDAKIDTVFVSSPDIADYEILDDN-TFMLYAKAEGRAEIV 80
Query: 87 VLGHNNDILLD 97
+ L +
Sbjct: 81 AFDVDGTPLTE 91
>gi|332188377|ref|ZP_08390102.1| bacterial type II and III secretion system family protein
[Sphingomonas sp. S17]
gi|332011606|gb|EGI53686.1| bacterial type II and III secretion system family protein
[Sphingomonas sp. S17]
Length = 511
Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+ + I G++ ++ + V DD I DV + + I GK G T I
Sbjct: 43 ADAGSGAGVLEINTGRARLITLPRPMTDLFVADDTIADVQ-VRSPTQLYIFGKKPGETTI 101
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRVYT 114
++ T + N S R+
Sbjct: 102 SATARGGAVVYATTVRIGNNLDSIGRMLR 130
>gi|299067807|emb|CBJ39018.1| pilus assembly secretion protein [Ralstonia solanacearum CMR15]
Length = 635
Score = 50.8 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 10 KNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEK 69
+ +T R+ + P + + + + VG+S ++Q + VG+ IV + L
Sbjct: 74 RADTARENTVKGPNC-TGPMRDHSEVTVPVGKSTMVQLSEPVRSRTVGNPNIVQAM-LVS 131
Query: 70 EKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQS 108
+T+ + G+++G+TN+IV G + + +++ A+
Sbjct: 132 PQTLYLLGQDVGTTNMIVQGRSGSCSV-IDVSVGADPGG 169
>gi|296284552|ref|ZP_06862550.1| type II and III secretion system protein [Citromicrobium
bathyomarinum JL354]
Length = 502
Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
+PT A ++ + I +++G+ ++ V + +D I D+ ++ ++
Sbjct: 9 AAPLSIVPTMADAQSVVRPTQDIVLSIGKGELINVPGSMADVFIANDSIADIQ-VKSQRQ 67
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQS 108
+ + GK+ G T + D++ + +N S
Sbjct: 68 LYLFGKSGGETTVYASNAAGDVIWAANVRVGSNIGS 103
>gi|320156053|ref|YP_004188432.1| flp pilus assembly protein, secretin CpaC [Vibrio vulnificus
MO6-24/O]
gi|319931365|gb|ADV86229.1| flp pilus assembly protein, secretin CpaC [Vibrio vulnificus
MO6-24/O]
Length = 462
Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ +I + VGQS ++ + V + D I DV ++ ++ G +G T+++++
Sbjct: 20 AHAAKQIDLEVGQSRLIPLSQEMRSVYIVDSTIADVKT-PSARSALVFGAKVGKTDLVIV 78
Query: 89 GHNNDILLDTEIATFANE 106
G + + + +
Sbjct: 79 GKEGEAIAHYRLNVKNSG 96
>gi|28900576|ref|NP_800231.1| rough colony protein RcpA [Vibrio parahaemolyticus RIMD 2210633]
gi|153836379|ref|ZP_01989046.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ3810]
gi|260877521|ref|ZP_05889876.1| rough colony protein RcpA [Vibrio parahaemolyticus AN-5034]
gi|260901740|ref|ZP_05910135.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ4037]
gi|308095456|ref|ZP_05906034.2| rough colony protein RcpA [Vibrio parahaemolyticus Peru-466]
gi|308125917|ref|ZP_05777993.2| rough colony protein RcpA [Vibrio parahaemolyticus K5030]
gi|28808956|dbj|BAC62064.1| rough colony protein RcpA [Vibrio parahaemolyticus RIMD 2210633]
gi|149750281|gb|EDM61026.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ3810]
gi|308087133|gb|EFO36828.1| rough colony protein RcpA [Vibrio parahaemolyticus Peru-466]
gi|308090527|gb|EFO40222.1| rough colony protein RcpA [Vibrio parahaemolyticus AN-5034]
gi|308108872|gb|EFO46412.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ4037]
gi|308114419|gb|EFO51959.1| rough colony protein RcpA [Vibrio parahaemolyticus K5030]
Length = 447
Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 5/111 (4%)
Query: 11 NETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKE 70
N+ + + + + G + + V V D +I D +
Sbjct: 3 NKNILLVTLGVALLLPASVSAGELLSLDKGAAKTINVKRNIDTVFVADTQIADYKVIANG 62
Query: 71 KTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFL 121
K +VI G G+T+II + + + E+ ++R+ ++
Sbjct: 63 K-LVIYGIGRGATSIIAYDRAGNEIYNAEVVVNK----SLRLLKQTIIARY 108
>gi|328470518|gb|EGF41429.1| rough colony protein RcpA [Vibrio parahaemolyticus 10329]
Length = 447
Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 5/111 (4%)
Query: 11 NETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKE 70
N+ + + + + G + + V V D +I D +
Sbjct: 3 NKNILLVTLGVALLLPASVSAGELLSLDKGAAKTINVKRNIDTVFVADTQIADYKVIANG 62
Query: 71 KTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFL 121
K +VI G G+T+II + + + E+ ++R+ ++
Sbjct: 63 K-LVIYGIGRGATSIIAYDRAGNEIYNAEVVVNK----SLRLLKQTIIARY 108
>gi|307730006|ref|YP_003907230.1| type II and III secretion system protein [Burkholderia sp.
CCGE1003]
gi|307584541|gb|ADN57939.1| type II and III secretion system protein [Burkholderia sp.
CCGE1003]
Length = 490
Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
G +Q+ + + VG L ++V +GD + DVL ++ +KT
Sbjct: 11 AASPAGFAAGGAQQ--------LELLVGSQQSLASGHTLRRVAIGDPSVADVLIIKGDKT 62
Query: 73 --VVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTV 110
V++ GK+ GSTN+++ D L + + ++
Sbjct: 63 GGVLLVGKSPGSTNVMLWEQGKDAPLSYVVNVSSPAAKSL 102
>gi|16127175|ref|NP_421739.1| pilus assembly protein CpaC [Caulobacter crescentus CB15]
gi|221235976|ref|YP_002518413.1| outer membrane pilus secretion channel cpaC [Caulobacter crescentus
NA1000]
gi|7208425|gb|AAF40192.1|AF229646_4 CpaC [Caulobacter crescentus CB15]
gi|13424571|gb|AAK24907.1| pilus assembly protein CpaC [Caulobacter crescentus CB15]
gi|220965149|gb|ACL96505.1| outer membrane pilus secretion channel cpaC [Caulobacter crescentus
NA1000]
Length = 560
Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
T + + + +A G+S I++ + ++V + +I D L ++ + I G G+T+
Sbjct: 80 TADQTAATLELAKGKSAIVELPSEVRDLLVTNPQIADA-VLRDKRRIYIVGLAEGTTDAA 138
Query: 87 VLGHNNDILLDTEIATFAN 105
+L I
Sbjct: 139 FFDTAGRRILSLSIRVSQP 157
>gi|167566934|ref|ZP_02359850.1| outer membrane protein [Burkholderia oklahomensis EO147]
Length = 550
Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 95 REATSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGLSVGTTNMIVQG 153
Query: 90 HNND-ILLDTEIATFANEQSTVRVYTPG 116
+ ++D +A A+
Sbjct: 154 RSGACQIID--VAVGADAGGLQTSLRQL 179
>gi|227114876|ref|ZP_03828532.1| hypothetical protein PcarbP_18025 [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 479
Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
T T A+ + ++ + + V Q +LQ + LP V+V D I L
Sbjct: 34 TTMMLPATTLAAGVSVAPVTDEVHLTVHQGRLLQLNELPDSVLVADPNIASFE-LPSPGN 92
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ + K++G+T + + N +++ + + +
Sbjct: 93 LFVYAKSVGTTTLYAMDENGNVINAIRLVSEHD 125
>gi|312116090|ref|YP_004013686.1| type II and III secretion system protein [Rhodomicrobium vannielii
ATCC 17100]
gi|311221219|gb|ADP72587.1| type II and III secretion system protein [Rhodomicrobium vannielii
ATCC 17100]
Length = 519
Score = 50.8 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
G ++ +R+ + +S ++ + + +V + I DV+ L ++ I G
Sbjct: 57 GAAAPLYHLNTQNERIDVRVVLNRSENVKVEYPFTEALVTNSDIADVVPLTNA-SINILG 115
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYT 114
K +G+T + +L + ++ +I + RV
Sbjct: 116 KKIGNTRLSLLDQDKRVIGIVDIEVSHDVDMLRRVMR 152
>gi|86748907|ref|YP_485403.1| type II and III secretion system protein [Rhodopseudomonas
palustris HaA2]
gi|86571935|gb|ABD06492.1| type II and III secretion system protein [Rhodopseudomonas
palustris HaA2]
Length = 479
Score = 50.8 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
T +Q N+ + + +G+S+++ K V+V D KI + + + I G +
Sbjct: 42 ATTTQTGGGMNARPLALGIGKSVVIDLPRDIKDVLVADPKIANA-VVRSSQRAYIIGAAV 100
Query: 81 GSTNIIVLGHNNDILLDTEIATFAN 105
G TNI+ + +IA +
Sbjct: 101 GQTNIVFFDSTGQQIAAYDIAVTRD 125
>gi|167908129|ref|ZP_02495334.1| type II/III secretion system protein [Burkholderia pseudomallei
NCTC 13177]
Length = 460
Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL+L D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 22 RESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGMSVGTTNMIVQG 80
Query: 90 HNNDI-LLDTEIATFANEQS 108
+ ++D +A A+
Sbjct: 81 KSGACRIID--VAVGADAGG 98
>gi|107100112|ref|ZP_01364030.1| hypothetical protein PaerPA_01001133 [Pseudomonas aeruginosa PACS2]
Length = 408
Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV-L 88
+ R+ + GQ L+ V +++ +GD KI DV L++ +V TGK GST++++
Sbjct: 29 AQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLV-TGKEQGSTSLLIWT 87
Query: 89 GHNNDILLDTEIATFANEQSTV 110
G + + L + +V
Sbjct: 88 GCSPEPL---RSLVEVEGRGSV 106
>gi|313106823|ref|ZP_07793035.1| RcpA [Pseudomonas aeruginosa 39016]
gi|310879537|gb|EFQ38131.1| RcpA [Pseudomonas aeruginosa 39016]
Length = 416
Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV-L 88
+ R+ + GQ L+ V +++ +GD KI DV L++ +V TGK GST++++
Sbjct: 37 AQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLV-TGKEQGSTSLLIWT 95
Query: 89 GHNNDILLDTEIATFANEQSTV 110
G + + L + +V
Sbjct: 96 GCSPEPL---RSLVEVEGRGSV 114
>gi|218893396|ref|YP_002442265.1| RcpA [Pseudomonas aeruginosa LESB58]
gi|254239026|ref|ZP_04932349.1| hypothetical protein PACG_05203 [Pseudomonas aeruginosa C3719]
gi|296391003|ref|ZP_06880478.1| putative type II secretion system protein [Pseudomonas aeruginosa
PAb1]
gi|126170957|gb|EAZ56468.1| hypothetical protein PACG_05203 [Pseudomonas aeruginosa C3719]
gi|218773624|emb|CAW29438.1| RcpA [Pseudomonas aeruginosa LESB58]
Length = 416
Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV-L 88
+ R+ + GQ L+ V +++ +GD KI DV L++ +V TGK GST++++
Sbjct: 37 AQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLV-TGKEQGSTSLLIWT 95
Query: 89 GHNNDILLDTEIATFANEQSTV 110
G + + L + +V
Sbjct: 96 GCSPEPL---RSLVEVEGRGSV 114
>gi|161524905|ref|YP_001579917.1| type II and III secretion system protein [Burkholderia multivorans
ATCC 17616]
gi|189350345|ref|YP_001945973.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
gi|160342334|gb|ABX15420.1| type II and III secretion system protein [Burkholderia multivorans
ATCC 17616]
gi|189334367|dbj|BAG43437.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
Length = 443
Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 18/111 (16%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK--TVVITGKNLGST 83
+ S I +AVG + ++V VGD I DVL ++ + +V++ K G+T
Sbjct: 18 ASLASASGTIELAVGAQRQISAGRPLQRVAVGDPAIADVLIMKGSRSSSVLLIAKAPGAT 77
Query: 84 NII---------------VLGHNNDILLDTEIATFANEQSTVRVYTPGTLS 119
N++ V+ +LD A N V + S
Sbjct: 78 NVMLWERGRDEPTVWSVEVVDAAAHAVLDDS-APRVNAYGGTAVLRGTSAS 127
>gi|78066131|ref|YP_368900.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383]
gi|77966876|gb|ABB08256.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383]
Length = 443
Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK-TVVITGKN 79
D S I +AVG L ++V VGD + DV+ ++ + V++ K+
Sbjct: 16 AMPPLSGAADTSGTISLAVGAQRQLATGRALQRVAVGDPSVADVMVVKGGRGGVLLIAKS 75
Query: 80 LGSTNIIVLGHNNDILLDTEIATFA--------NEQSTVRVYTPGTL 118
G+TN+++ +D ++ + S+V Y T+
Sbjct: 76 AGATNVMIWERGHDEPTVYNVSVTSGAARALLDGGTSSVNTYGGTTV 122
>gi|15599500|ref|NP_252994.1| RcpA [Pseudomonas aeruginosa PAO1]
gi|254244885|ref|ZP_04938207.1| hypothetical protein PA2G_05758 [Pseudomonas aeruginosa 2192]
gi|9950526|gb|AAG07692.1|AE004846_9 RcpA [Pseudomonas aeruginosa PAO1]
gi|126198263|gb|EAZ62326.1| hypothetical protein PA2G_05758 [Pseudomonas aeruginosa 2192]
Length = 416
Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV-L 88
+ R+ + GQ L+ V +++ +GD KI DV L++ +V TGK GST++++
Sbjct: 37 AQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLV-TGKEQGSTSLLIWT 95
Query: 89 GHNNDILLDTEIATFANEQSTV 110
G + + L + +V
Sbjct: 96 GCSPEPL---RSLVEVEGRGSV 114
>gi|167851182|ref|ZP_02476690.1| Putative phospholipid-binding domain family protein [Burkholderia
pseudomallei B7210]
Length = 449
Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL+L D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 17 RESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGMSVGTTNMIVQG 75
Query: 90 HNNDI-LLDTEIATFANEQS 108
+ ++D +A A+
Sbjct: 76 KSGACRIID--VAVGADAGG 93
>gi|52425834|ref|YP_088971.1| GspD protein [Mannheimia succiniciproducens MBEL55E]
gi|52307886|gb|AAU38386.1| GspD protein [Mannheimia succiniciproducens MBEL55E]
Length = 458
Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + G S ++ D + V ++ D ++ +V GK G+T++ N +I
Sbjct: 21 MYLEQGTSKYIELDKKIDTIFVSSSEVADYEIVDDYSFMVY-GKQEGTTDVTAFDANGNI 79
Query: 95 LLDTEIATFANEQSTVRVYTP 115
L + A + V
Sbjct: 80 LYTDTLNVNALINNIVDTNKQ 100
>gi|170696786|ref|ZP_02887895.1| type II and III secretion system protein [Burkholderia graminis
C4D1M]
gi|170138302|gb|EDT06521.1| type II and III secretion system protein [Burkholderia graminis
C4D1M]
Length = 479
Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT--VVITGKNLGSTNIIVLG 89
+ ++ IAVG L ++V +GD + DVL ++ +KT V++ GK+ G+TN+++
Sbjct: 31 AEQLDIAVGSQQSLAGGHTLRRVAIGDPSVADVLIIKGDKTGGVLLIGKSPGTTNVMLWE 90
Query: 90 HNNDILLDTEIATFANEQSTV 110
D L + + ++
Sbjct: 91 QGKDAPLSYVVNVSSPAAKSL 111
>gi|167829715|ref|ZP_02461186.1| Putative phospholipid-binding domain family protein [Burkholderia
pseudomallei 9]
Length = 510
Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 75 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGMSVGTTNMIVQG 133
Query: 90 HNNDI-LLDTEIATFANEQS 108
+ ++D +A A+
Sbjct: 134 KSGACRIID--VAVGADAGG 151
>gi|239908021|ref|YP_002954762.1| bacterial type II and III secretion system protein family protein
[Desulfovibrio magneticus RS-1]
gi|239797887|dbj|BAH76876.1| bacterial type II and III secretion system protein family protein
[Desulfovibrio magneticus RS-1]
Length = 528
Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 1/94 (1%)
Query: 14 VRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTV 73
I + R+ + +G+S+ILQ D +V V + D L + +
Sbjct: 24 AAPAQIVWGGVAPVAVRAAPRLALTIGKSVILQSDADIARVSVAQPDVAD-FVLLSPRQI 82
Query: 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFANEQ 107
+TG+ G TN+ + + I ++ +
Sbjct: 83 YVTGRAPGITNLTLWDKGDKIRAVYDLDVAPDAS 116
>gi|116052338|ref|YP_792649.1| putative type II secretion system protein [Pseudomonas aeruginosa
UCBPP-PA14]
gi|115587559|gb|ABJ13574.1| putative type II secretion system protein [Pseudomonas aeruginosa
UCBPP-PA14]
Length = 416
Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV-L 88
+ R+ + GQ L+ V +++ +GD KI DV L++ +V TGK GST++++
Sbjct: 37 AQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLV-TGKEQGSTSLLIWT 95
Query: 89 GHNNDILLDTEIATFANEQSTV 110
G + + L + +V
Sbjct: 96 GCSPEPL---RSLVEVEGRGSV 114
>gi|303248302|ref|ZP_07334564.1| type II and III secretion system protein [Desulfovibrio
fructosovorans JJ]
gi|302490327|gb|EFL50239.1| type II and III secretion system protein [Desulfovibrio
fructosovorans JJ]
Length = 528
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ R+ + +G+S+ILQ D +V V +I D L + + +TG+ G TN+ +
Sbjct: 39 RTAPRLSLTIGKSVILQSDADVSRVSVAQPEIAD-FVLLSPRQIYVTGRAPGITNLTLWD 97
Query: 90 HNNDI 94
+ +
Sbjct: 98 KGDKV 102
>gi|254293214|ref|YP_003059237.1| type II and III secretion system protein [Hirschia baltica ATCC
49814]
gi|254041745|gb|ACT58540.1| type II and III secretion system protein [Hirschia baltica ATCC
49814]
Length = 535
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
I ++ S + ++ ++ +L+F+ ++V + +I DVLA K + V+
Sbjct: 41 TIRVRVTEPGQSATSRTLNLSQNKTAVLEFEEDVDDILVANPEIADVLARSKRRIAVL-A 99
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQS 108
K G ++II +L ++ S
Sbjct: 100 KGKGESSIIFTNAQGKEILSLDVIVAGQGVS 130
>gi|37680194|ref|NP_934803.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016]
gi|37198941|dbj|BAC94774.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016]
Length = 462
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ +I + VGQS ++ + V + D + DV ++ ++ G +G T+++++
Sbjct: 20 AHAAKQIDLEVGQSRLIPLSKEMRSVYIVDSTVADVKT-PSARSALVFGAKVGKTDLVIV 78
Query: 89 GHNNDILLDTEIATFANE 106
G + + + +
Sbjct: 79 GKEGEAIAHYRLNVKNSG 96
>gi|167899813|ref|ZP_02487214.1| Putative phospholipid-binding domain family protein [Burkholderia
pseudomallei 7894]
Length = 473
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 39 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGMSVGTTNMIVQG 97
Query: 90 HNNDI-LLDTEIATFANEQS 108
+ ++D +A A+
Sbjct: 98 KSGACRIID--VAVGADAGG 115
>gi|17545374|ref|NP_518776.1| outer membrane channel protein [Ralstonia solanacearum GMI1000]
gi|17427666|emb|CAD14185.1| probable pilus assembly protein, secretin cpac [Ralstonia
solanacearum GMI1000]
Length = 634
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 10 KNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEK 69
+ +T R+ + P + + + + VG+S ++Q + VG+ IV + L
Sbjct: 74 RADTARENTVKGPNC-TGPMRDHSEVTVPVGKSTMVQLTEPVRSRTVGNPNIVQAM-LVS 131
Query: 70 EKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQS 108
+T+ + G+++G+TN+IV G + + +++ A+
Sbjct: 132 PQTLYLLGQDVGTTNMIVQGRSGSCSV-IDVSVGADPGG 169
>gi|258620803|ref|ZP_05715838.1| Flp pilus assembly protein [Vibrio mimicus VM573]
gi|258587001|gb|EEW11715.1| Flp pilus assembly protein [Vibrio mimicus VM573]
Length = 444
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + + G + + V V D+ + D +++ K VV+ G G+T++IV
Sbjct: 23 AELMNLDQGAAKTINLKRQIDTVFVADNTVADYRIVDQNK-VVVYGVGQGATSVIVYDRG 81
Query: 92 NDILLDTEIATFANEQSTVRVYTPG 116
+ + ++E+ ++R+
Sbjct: 82 GNEIYNSEVVV----NQSLRLLKQT 102
>gi|167924333|ref|ZP_02511424.1| Putative phospholipid-binding domain family protein [Burkholderia
pseudomallei BCC215]
Length = 438
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 2 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGMSVGTTNMIVQG 60
Query: 90 HNNDI-LLDTEIATFANEQS 108
+ ++D +A A+
Sbjct: 61 KSGACRIID--VAVGADAGG 78
>gi|167821374|ref|ZP_02453054.1| Putative phospholipid-binding domain family protein [Burkholderia
pseudomallei 91]
Length = 494
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 66 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGMSVGTTNMIVQG 124
Query: 90 HNNDI-LLDTEIATFANEQS 108
+ ++D +A A+
Sbjct: 125 KSGACRIID--VAVGADAGG 142
>gi|262164949|ref|ZP_06032687.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio mimicus VM223]
gi|262027329|gb|EEY45996.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio mimicus VM223]
Length = 444
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + + G + + V V D+ + D +++ K VV+ G G+T++IV
Sbjct: 23 AELMNLDQGAAKTINLKRQIDTVFVADNTVADYRIVDQNK-VVVYGVGQGATSVIVYDRG 81
Query: 92 NDILLDTEIATFANEQSTVRVYTPG 116
+ + ++E+ ++R+
Sbjct: 82 GNEIYNSEVVV----NQSLRLLKQT 102
>gi|323525746|ref|YP_004227899.1| type II and III secretion system protein [Burkholderia sp.
CCGE1001]
gi|323382748|gb|ADX54839.1| type II and III secretion system protein [Burkholderia sp.
CCGE1001]
Length = 474
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT--VVITGK 78
+ + + I VG L ++V +GD + DVL + ++T V++ GK
Sbjct: 11 AVSPAGFAAGGAQALDIVVGSQQSLASGHTLRRVAIGDPSVADVLVIRGDRTGGVLLIGK 70
Query: 79 NLGSTNIIVLGHNNDILLDTEIATFANEQSTV 110
+ GSTN+++ D L + + ++
Sbjct: 71 SPGSTNVMLWEQGKDAPLSYVVNVSSPAAKSL 102
>gi|27365651|ref|NP_761179.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus CMCP6]
gi|27361799|gb|AAO10706.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus CMCP6]
Length = 462
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ +I + VGQS ++ + V + D + DV ++ ++ G +G T+++++
Sbjct: 20 AHAAKQIDLEVGQSRLIPLSKEMRSVYIVDSTVADVKT-PSARSALVFGAKVGKTDLVIV 78
Query: 89 GHNNDILLDTEIATFANE 106
G + + + +
Sbjct: 79 GKEGEAIAHYRLNVKNSG 96
>gi|167744175|ref|ZP_02416949.1| Putative phospholipid-binding domain family protein [Burkholderia
pseudomallei 14]
Length = 439
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 9 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGMSVGTTNMIVQG 67
Query: 90 HNNDI-LLDTEIATFANEQS 108
+ ++D +A A+
Sbjct: 68 KSGACRIID--VAVGADAGG 85
>gi|167725247|ref|ZP_02408483.1| Putative phospholipid-binding domain family protein [Burkholderia
pseudomallei DM98]
Length = 448
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 17 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGMSVGTTNMIVQG 75
Query: 90 HNNDI-LLDTEIATFANEQS 108
+ ++D +A A+
Sbjct: 76 KSGACRIID--VAVGADAGG 93
>gi|167916476|ref|ZP_02503567.1| Putative phospholipid-binding domain family protein [Burkholderia
pseudomallei 112]
Length = 452
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 17 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGMSVGTTNMIVQG 75
Query: 90 HNNDI-LLDTEIATFANEQS 108
+ ++D +A A+
Sbjct: 76 KSGACRIID--VAVGADAGG 93
>gi|254252520|ref|ZP_04945838.1| type II and III secretion system protein [Burkholderia dolosa
AUO158]
gi|124895129|gb|EAY69009.1| type II and III secretion system protein [Burkholderia dolosa
AUO158]
Length = 200
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 18/111 (16%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL--EKEKTVVITGKNLGST 83
+ S I +AVG + ++V VGD + DVL + + +V++ K G+T
Sbjct: 18 ASLAGASGTIELAVGAQRQISAGRALQRVAVGDPAVADVLIMKGSRSGSVLLVAKAPGAT 77
Query: 84 NII---------------VLGHNNDILLDTEIATFANEQSTVRVYTPGTLS 119
N++ V+ +LD N V S
Sbjct: 78 NVMLWERGRDEPTVWNVEVVDAAAQAVLDGS-TPRVNAYGGTAVLRGTAAS 127
>gi|33152386|ref|NP_873739.1| rough colony protein A [Haemophilus ducreyi 35000HP]
gi|21326707|gb|AAL92467.1| RcpA [Haemophilus ducreyi]
gi|33148609|gb|AAP96128.1| rough colony protein A [Haemophilus ducreyi 35000HP]
Length = 456
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + GQ+ +++ + V ++ D L+ + ++ K G T I+V
Sbjct: 26 AKTFNLEQGQTKLIKTKTKIDTIFVSSPEVADYQILDDN-SFMLYAKGEGKTEIVVFDFE 84
Query: 92 NDILLDTEIAT 102
+ L + ++
Sbjct: 85 GNALTEDVVSV 95
>gi|167617230|ref|ZP_02385861.1| Bacterial type II and III secretion system protein domain protein
[Burkholderia thailandensis Bt4]
Length = 468
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G +
Sbjct: 23 VSVPLGKSLLVPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGMSVGTTNMIVQGKSGAC 81
Query: 95 -LLDTEIATFANEQS 108
++D +A A+
Sbjct: 82 RIID--VAVGADAGG 94
>gi|167579115|ref|ZP_02371989.1| Bacterial type II and III secretion system protein domain protein
[Burkholderia thailandensis TXDOH]
Length = 462
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G +
Sbjct: 23 VSVPLGKSLLVPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGMSVGTTNMIVQGKSGAC 81
Query: 95 -LLDTEIATFANEQS 108
++D +A A+
Sbjct: 82 RIID--VAVGADAGG 94
>gi|126445563|ref|YP_001064076.1| type II/III secretion system protein [Burkholderia pseudomallei
668]
gi|126225054|gb|ABN88559.1| type II/III secretion system protein [Burkholderia pseudomallei
668]
Length = 690
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 97 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGMSVGTTNMIVQG 155
Query: 90 HNNDI-LLDTEIATFANEQS 108
+ ++D +A A+
Sbjct: 156 KSGACRIID--VAVGADAGG 173
>gi|254182583|ref|ZP_04889177.1| type II/III secretion system protein [Burkholderia pseudomallei
1655]
gi|184213118|gb|EDU10161.1| type II/III secretion system protein [Burkholderia pseudomallei
1655]
Length = 690
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 97 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGMSVGTTNMIVQG 155
Query: 90 HNNDI-LLDTEIATFANEQS 108
+ ++D +A A+
Sbjct: 156 KSGACRIID--VAVGADAGG 173
>gi|237509564|ref|ZP_04522279.1| type II/III secretion system protein [Burkholderia pseudomallei
MSHR346]
gi|235001769|gb|EEP51193.1| type II/III secretion system protein [Burkholderia pseudomallei
MSHR346]
Length = 690
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 97 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGMSVGTTNMIVQG 155
Query: 90 HNNDI-LLDTEIATFANEQS 108
+ ++D +A A+
Sbjct: 156 KSGACRIID--VAVGADAGG 173
>gi|323499921|ref|ZP_08104880.1| pilus assembly protein CpaC [Vibrio sinaloensis DSM 21326]
gi|323315162|gb|EGA68214.1| pilus assembly protein CpaC [Vibrio sinaloensis DSM 21326]
Length = 487
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
I + S + + +++ +S + K+V +GD +++D++ L+ ++ V + G
Sbjct: 11 SISFSLSAVSATQSGKIVKVPHHKSTHVTLAAKAKRVSLGDPEVLDIVMLKSDE-VFLIG 69
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFAN 105
K LGSTN++ ++ I +
Sbjct: 70 KKLGSTNLMAWDSRGRLIESINIEVTHD 97
>gi|149188863|ref|ZP_01867153.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1]
gi|148837283|gb|EDL54230.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1]
Length = 456
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 37 IAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILL 96
I + +Q + +V + + I D + T+V+ +G + +IV G NND+LL
Sbjct: 35 ITLNDGQHIQLKMPIGKVFISNPAIADYKIINDN-TLVVFANGVGQSRLIVYGTNNDVLL 93
Query: 97 DTEIATFAN 105
I +
Sbjct: 94 SDRIIVDLD 102
>gi|134281876|ref|ZP_01768583.1| type II/III secretion system protein [Burkholderia pseudomallei
305]
gi|134246938|gb|EBA47025.1| type II/III secretion system protein [Burkholderia pseudomallei
305]
Length = 685
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL+L D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 97 RESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGMSVGTTNMIVQG 155
Query: 90 HNNDI-LLDTEIATFANEQS 108
+ ++D +A A+
Sbjct: 156 KSGACRIID--VAVGADAGG 173
>gi|76819084|ref|YP_336469.1| phospholipid-binding domain-containing protein [Burkholderia
pseudomallei 1710b]
gi|254264517|ref|ZP_04955382.1| type II/III secretion system protein [Burkholderia pseudomallei
1710a]
gi|76583557|gb|ABA53031.1| Putative phospholipid-binding domain family [Burkholderia
pseudomallei 1710b]
gi|254215519|gb|EET04904.1| type II/III secretion system protein [Burkholderia pseudomallei
1710a]
Length = 690
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 97 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGMSVGTTNMIVQG 155
Query: 90 HNNDI-LLDTEIATFANEQS 108
+ ++D +A A+
Sbjct: 156 KSGACRIID--VAVGADAGG 173
>gi|288956969|ref|YP_003447310.1| pilus assembly protein [Azospirillum sp. B510]
gi|288909277|dbj|BAI70766.1| pilus assembly protein [Azospirillum sp. B510]
Length = 491
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + VG S +++ V V D +I DV A + + G+ G T + L + +
Sbjct: 66 MTLDVGTSEMVRLSAPATNVYVADPEIADVQA-ASGTVIFVLGRKPGRTTVYALTEGDRV 124
Query: 95 LLDTEIAT 102
+L +I
Sbjct: 125 VLHRDIRV 132
>gi|153006805|ref|YP_001381130.1| type II and III secretion system protein [Anaeromyxobacter sp.
Fw109-5]
gi|152030378|gb|ABS28146.1| type II and III secretion system protein [Anaeromyxobacter sp.
Fw109-5]
Length = 490
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/102 (17%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Query: 2 HRKRQREIKNETVRKKGIPTTASQKTPEDNSNR-------IRIAVGQSLILQFDVLPKQV 54
HR R + + +Q TP +R + + GQ+ +L ++
Sbjct: 4 HRARALLVTLLVAAGPAVAQEQAQATPALRIDREMGAAREMSLEAGQNRLLIISEQIARI 63
Query: 55 IVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILL 96
V + + D+ + + + +T K +G+T++ + +N L+
Sbjct: 64 AVANPDVADLKVVTPTQVL-LTAKGVGTTDLTLWNRDNQPLV 104
>gi|307293450|ref|ZP_07573296.1| type II and III secretion system protein [Sphingobium
chlorophenolicum L-1]
gi|306881516|gb|EFN12732.1| type II and III secretion system protein [Sphingobium
chlorophenolicum L-1]
Length = 499
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
N I ++VG S ++ V++GD +VDV + + + + K G T + N
Sbjct: 44 DNAILLSVGGSKVINLPAKMSDVVIGDPDVVDVH-VRSQNQLYLIAKKAGETTVFATAIN 102
Query: 92 NDILLDTEIAT 102
+L +
Sbjct: 103 GKVLFSGTVRV 113
>gi|85707702|ref|ZP_01038768.1| type II secretion system protein [Erythrobacter sp. NAP1]
gi|85689236|gb|EAQ29239.1| type II secretion system protein [Erythrobacter sp. NAP1]
Length = 576
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
S+ I I++G+ ++Q V V ++ + DV ++ ++ + + G++ G T I
Sbjct: 65 SDEIVISIGRGELVQVPGTMTDVFVANENVADVQ-IKSQRQLYVFGRSGGETTIYASDAR 123
Query: 92 NDILLDTEIATFANEQS 108
+++ + +N S
Sbjct: 124 GEVIFSANVRVGSNIGS 140
>gi|126456485|ref|YP_001076989.1| type II/III secretion system protein [Burkholderia pseudomallei
1106a]
gi|242311194|ref|ZP_04810211.1| type II/III secretion system protein [Burkholderia pseudomallei
1106b]
gi|126230253|gb|ABN93666.1| type II/III secretion system protein [Burkholderia pseudomallei
1106a]
gi|242134433|gb|EES20836.1| type II/III secretion system protein [Burkholderia pseudomallei
1106b]
Length = 690
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 97 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGMSVGTTNMIVQG 155
Query: 90 HNNDI-LLDTEIATFANEQS 108
+ ++D +A A+
Sbjct: 156 KSGACRIID--VAVGADAGG 173
>gi|53723207|ref|YP_112192.1| outer membrane protein [Burkholderia pseudomallei K96243]
gi|52213621|emb|CAH39675.1| putative outer membrane protein [Burkholderia pseudomallei K96243]
Length = 690
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 97 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGMSVGTTNMIVQG 155
Query: 90 HNNDI-LLDTEIATFANEQS 108
+ ++D +A A+
Sbjct: 156 KSGACRIID--VAVGADAGG 173
>gi|85373131|ref|YP_457193.1| type II secretion system protein [Erythrobacter litoralis HTCC2594]
gi|84786214|gb|ABC62396.1| type II secretion system protein [Erythrobacter litoralis HTCC2594]
Length = 574
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 42/111 (37%), Gaps = 7/111 (6%)
Query: 4 KRQREIKNETVRKKGIPTTASQKTPEDNSNRIR------IAVGQSLILQFDVLPKQVIVG 57
KR+ K +P A + ++ +++G+ ++ V +
Sbjct: 28 KRRLIAKALVASLAALPVAAGPAQVAHAQSIVKPSQDVVLSIGRGELISVPGAMADVFIA 87
Query: 58 DDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQS 108
+D + DV ++ ++ + + GK+ G T I D++ + N S
Sbjct: 88 NDAVADVQ-IKSQRQLYVFGKSGGETTIYASNSAGDVIWAANVRVANNIDS 137
>gi|295700370|ref|YP_003608263.1| type II and III secretion system protein [Burkholderia sp.
CCGE1002]
gi|295439583|gb|ADG18752.1| type II and III secretion system protein [Burkholderia sp.
CCGE1002]
Length = 634
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 11 NETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKE 70
V + D SN + +AVG+S+++ + +G+ + L +
Sbjct: 81 GRMVAPAQLTGPNCTGEIRDESN-VSVAVGKSILVPLVEPARNRTLGNPVVAQA-TLVSQ 138
Query: 71 KTVVITGKNLGSTNIIVLGHNND-ILLDTEIATFANE 106
+T+ + G ++G+TN+IV G + ++D + A
Sbjct: 139 RTLYVVGMSVGTTNMIVQGRSGACQIIDVSVGVDAEG 175
>gi|217424167|ref|ZP_03455666.1| outer membrane protein [Burkholderia pseudomallei 576]
gi|217392632|gb|EEC32655.1| outer membrane protein [Burkholderia pseudomallei 576]
Length = 673
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 97 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGMSVGTTNMIVQG 155
Query: 90 HNNDI-LLDTEIATFANEQS 108
+ ++D +A A+
Sbjct: 156 KSGACRIID--VAVGADAGG 173
>gi|254192422|ref|ZP_04898861.1| type II/III secretion system protein [Burkholderia pseudomallei
S13]
gi|169649180|gb|EDS81873.1| type II/III secretion system protein [Burkholderia pseudomallei
S13]
Length = 690
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 97 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGMSVGTTNMIVQG 155
Query: 90 HNNDI-LLDTEIATFANEQS 108
+ ++D +A A+
Sbjct: 156 KSGACRIID--VAVGADAGG 173
>gi|329890996|ref|ZP_08269339.1| bacterial type II and III secretion system family protein
[Brevundimonas diminuta ATCC 11568]
gi|328846297|gb|EGF95861.1| bacterial type II and III secretion system family protein
[Brevundimonas diminuta ATCC 11568]
Length = 522
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 1/95 (1%)
Query: 11 NETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKE 70
T + T + + G S + + VI+ + + + + L
Sbjct: 24 GSAASDGARAQTRAAITAGSAPQMVNLPRGTSFAVDLPADARDVIISNPAVAEAM-LHSP 82
Query: 71 KTVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ + + G G T+ + L + +L + A
Sbjct: 83 RRITMIGLAGGETDAVFLDASGRTILALRVRVDAG 117
>gi|227820510|ref|YP_002824481.1| type II and III secretion system protein RhcC2 [Sinorhizobium
fredii NGR234]
gi|227339509|gb|ACP23728.1| type II and III secretion system protein RhcC2 [Sinorhizobium
fredii NGR234]
Length = 447
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 8/106 (7%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
+A K N + + VG+ IL+FD + V + D I DV + V I
Sbjct: 32 SASAQVKVDAINGQVLELTVGEGTILRFDEPVESVFLADTAIADVRVV-SPGVVYIYATK 90
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTP 125
G TN+I L + ++ N S L+ P
Sbjct: 91 TGDTNLIALSADQMTRGTVQVRVSGNP-------RAAEQSALALQP 129
>gi|284048526|ref|YP_003398865.1| type II and III secretion system protein [Acidaminococcus
fermentans DSM 20731]
gi|283952747|gb|ADB47550.1| type II and III secretion system protein [Acidaminococcus
fermentans DSM 20731]
Length = 590
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 7/101 (6%)
Query: 12 ETVRKKGIPTTAS---QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
++ G+ TA+ + + +AV S ++ ++ VG+ +I DV L
Sbjct: 3 NYSKRMGLLVTAAILGMTGQALAATTLSVAVNGSRYME-ASGITRLAVGNPEIADVRLLS 61
Query: 69 KEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+ + GK GST ++V N + + ++ T
Sbjct: 62 GNDFL-LVGKKPGSTTLLVWSDNGRE--EYNVFVSGSDAGT 99
>gi|197106489|ref|YP_002131866.1| Flp pilus assembly protein, secretin CpaC [Phenylobacterium
zucineum HLK1]
gi|196479909|gb|ACG79437.1| Flp pilus assembly protein, secretin CpaC [Phenylobacterium
zucineum HLK1]
Length = 438
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
S+ P + I + +SL + +++V +I V A ++ + G GST
Sbjct: 32 SEPAPRRS---IHVPRDKSLSFRLAQPAARIVVSQPEIAKVTATSD-RSFYVQGLEFGST 87
Query: 84 NIIVLGHNNDILLDTEIATFANEQS 108
N++V G +L +I + +
Sbjct: 88 NMLVYGPGGRLLEVLDIRVGYDAEG 112
>gi|257141104|ref|ZP_05589366.1| type II and III secretion system protein [Burkholderia
thailandensis E264]
Length = 826
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G +
Sbjct: 102 VSVPLGKSLLVPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGMSVGTTNMIVQGKSGAC 160
Query: 95 -LLDTEIATFANEQS 108
++D +A A+
Sbjct: 161 RIID--VAVGADAGG 173
>gi|163757627|ref|ZP_02164716.1| putative pilus assembly transmembrane protein [Hoeflea
phototrophica DFL-43]
gi|162285129|gb|EDQ35411.1| putative pilus assembly transmembrane protein [Hoeflea
phototrophica DFL-43]
Length = 496
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 13 TVRKKGIPTTASQ------KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLA 66
T + P ASQ K+ S R+++ + +++++ ++V D + D +
Sbjct: 33 TTGRLATPAQASQNIIKIKKSGPGVSKRVKLGLNKAIVVDLPTDAHDILVADPALADAVT 92
Query: 67 LEKEKTVVITGKNLGSTNIIVLGHNN 92
+ + + GK +G TNI V G N
Sbjct: 93 -RTSRRLYLFGKTVGQTNIFVFGPNG 117
>gi|167648152|ref|YP_001685815.1| type II and III secretion system protein [Caulobacter sp. K31]
gi|167350582|gb|ABZ73317.1| type II and III secretion system protein [Caulobacter sp. K31]
Length = 545
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + +A G+S I++ V + ++V + + D L + + + G G T+ +
Sbjct: 63 TASGAQSLTLARGKSAIVELPVDVRDMLVTNPAVADA-VLRGPRRIYVLGMGQGVTDAVF 121
Query: 88 LGHNNDILLDTEIATFANEQS 108
+L I + +
Sbjct: 122 FDAAGRKILSLAIRVDQDSSA 142
>gi|260776715|ref|ZP_05885610.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
gi|260607938|gb|EEX34203.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
Length = 476
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+S +++ +S + K+V +GD +++D++ L K V + GK LGSTN++
Sbjct: 9 AATQSSKVVKVPHHKSTHVTLVGKAKRVSLGDPEVLDIVML-KSNEVFLIGKKLGSTNLM 67
Query: 87 VLGHNNDILLDTEIATFAN 105
++ I +
Sbjct: 68 AWDSRGRLIESINIEVTHD 86
>gi|254245567|ref|ZP_04938888.1| Flp pilus assembly protein, secretin CpaC [Burkholderia
cenocepacia PC184]
gi|124870343|gb|EAY62059.1| Flp pilus assembly protein, secretin CpaC [Burkholderia
cenocepacia PC184]
Length = 443
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL--EKEKTVVITGKNLGST 83
+ S I +AVG + ++V VGD I DVL + + +V++T K G+T
Sbjct: 18 ASFASASATIELAVGAQRQISAGRTLQRVAVGDPAIADVLIMKGSRSGSVLLTAKAPGAT 77
Query: 84 NIIVLGHN 91
N+++
Sbjct: 78 NVMLWERG 85
>gi|322514180|ref|ZP_08067245.1| rough colony protein A [Actinobacillus ureae ATCC 25976]
gi|322119966|gb|EFX91968.1| rough colony protein A [Actinobacillus ureae ATCC 25976]
Length = 162
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+ + + GQS +++ D V V + D L+ T ++ K G I+
Sbjct: 22 SHTAVAKTFALEQGQSQLIKTDAKIDTVFVSSPDVADYEILDDN-TFMLYTKAEGRAEIV 80
Query: 87 VLGHNNDILLD 97
+ L +
Sbjct: 81 AFDVDGTPLTE 91
>gi|86147467|ref|ZP_01065779.1| Flp pilus assembly protein [Vibrio sp. MED222]
gi|85834760|gb|EAQ52906.1| Flp pilus assembly protein [Vibrio sp. MED222]
Length = 485
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
+ I + + + + +S + +V +GD ++D++ L K
Sbjct: 6 ALFLSLICFSTASVAALQTGKTVTVPHHKSTHVVLSGKASKVSLGDPDVLDIVIL-KSNE 64
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
V + GK LG+TN++ ++ I +
Sbjct: 65 VFLIGKKLGATNLMAWDSRGQLIESINIEVTHD 97
>gi|146342078|ref|YP_001207126.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. ORS278]
gi|146194884|emb|CAL78909.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. ORS278]
Length = 492
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+ + +G+S+++ F K V+V D KI + + K I G +G TN++
Sbjct: 58 YLSLGIGKSVVVDFPQDVKDVLVADPKIANA-VVRSAKRAYIIGAAIGQTNVVFFDGEGQ 116
Query: 94 ILLDTEIATFANEQST 109
+ +IA +
Sbjct: 117 QVAAYDIAIKRDLNGV 132
>gi|84385684|ref|ZP_00988715.1| hypothetical Flp pilus assembly protein [Vibrio splendidus 12B01]
gi|84379664|gb|EAP96516.1| hypothetical Flp pilus assembly protein [Vibrio splendidus 12B01]
Length = 456
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 37 IAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILL 96
I + +Q QV + + IVD + T+V+ +G + +IV G + D+LL
Sbjct: 35 ITLNDGQHIQLKSPIGQVFINNPDIVDYKIINDN-TIVVFANAIGQSRLIVYGIDGDVLL 93
Query: 97 DTEIATFANEQSTVR 111
I + R
Sbjct: 94 SDRIIVDLDLTDIRR 108
>gi|83716099|ref|YP_440456.1| type II and III secretion system protein [Burkholderia
thailandensis E264]
gi|83649924|gb|ABC33988.1| Bacterial type II and III secretion system protein domain protein
[Burkholderia thailandensis E264]
Length = 679
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G +
Sbjct: 102 VSVPLGKSLLVPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGMSVGTTNMIVQGKSGAC 160
Query: 95 -LLDTEIATFANEQS 108
++D +A A+
Sbjct: 161 RIID--VAVGADAGG 173
>gi|188592032|ref|YP_001796630.1| type II secretion system protein; precursor [Cupriavidus
taiwanensis LMG 19424]
gi|170938406|emb|CAP63393.1| putative Type II secretion system protein; putative precursor
[Cupriavidus taiwanensis LMG 19424]
Length = 475
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL--EKEKTVVITGK 78
+Q + ++R+ G L+ ++V VG+ + D L L +V++ K
Sbjct: 40 APRAQAQDAATARQLRLMAGAQKELRSAQPVERVAVGNPAVADALILRTRGAPSVLLVAK 99
Query: 79 NLGSTNIIVLGHNNDILLDTEIATFA 104
G T+++V + + A
Sbjct: 100 QPGVTDVMVWTRGGAEPQNYSVQVDA 125
>gi|154250689|ref|YP_001411513.1| type II and III secretion system protein [Parvibaculum
lavamentivorans DS-1]
gi|154154639|gb|ABS61856.1| type II and III secretion system protein [Parvibaculum
lavamentivorans DS-1]
Length = 491
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+S I + + ++ I++ + + V+V + IVD + K + G +G TN
Sbjct: 55 SSRSIVLGLNKAAIVELPIAARDVLVSNPAIVDA-VVRTNKRTYLIGLAVGQTNAFFFNE 113
Query: 91 NNDILLDTEIATFANEQS 108
+L+ EI +
Sbjct: 114 AGQQILNLEIRVARDLTG 131
>gi|152994347|ref|YP_001339182.1| type II and III secretion system protein [Marinomonas sp. MWYL1]
gi|150835271|gb|ABR69247.1| type II and III secretion system protein [Marinomonas sp. MWYL1]
Length = 463
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 3 RKRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIV 62
R E N T + + T++ + E S + + V + +L +V++ + I
Sbjct: 24 RAAYLEPMNNTSESQSVIGTSAYQQVE-VSGNVNLVVNRGKLLTLPQNAAKVLIANPDIA 82
Query: 63 DVLALEKEKTVVITGKNLGSTNIIVLGHNNDILL 96
+ V + K GST++ L N ++L
Sbjct: 83 -SFQMPSPDNVFVFAKKSGSTSLYALDDENQVIL 115
>gi|254506750|ref|ZP_05118890.1| Flp pilus assembly protein, secretin CpaC [Vibrio parahaemolyticus
16]
gi|219550331|gb|EED27316.1| Flp pilus assembly protein, secretin CpaC [Vibrio parahaemolyticus
16]
Length = 487
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
S + +++ +S + K+V +GD +++D++ L+ ++ V + GK LGST
Sbjct: 17 SATAATQSGKIVKVPHHKSTHVTLAGKAKRVSLGDPEVLDIVMLKSDE-VFLIGKKLGST 75
Query: 84 NIIVLGHNNDILLDTEIATFAN 105
N++ ++ I +
Sbjct: 76 NLMAWDRRGQLIESINIEVTHD 97
>gi|86147184|ref|ZP_01065500.1| general secretion pathway protein D [Vibrio sp. MED222]
gi|85835068|gb|EAQ53210.1| general secretion pathway protein D [Vibrio sp. MED222]
Length = 439
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 8/89 (8%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+A G++ V + I D ++ K VV+ GKN+GS + I
Sbjct: 20 AQGSTNLAQGEAKTFSIRGEIASVFISGKNIADYQVIDSNK-VVVFGKNIGSASFIAFDA 78
Query: 91 NNDILLDTEIATFANEQSTVRVYTPGTLS 119
L + + + Y
Sbjct: 79 KGRELFNRLLLVNKS-------YREIEQQ 100
>gi|218708107|ref|YP_002415728.1| putative bacterial type II secretion system protein D; rcpA, CpaC
[Vibrio splendidus LGP32]
gi|218321126|emb|CAV17076.1| putative bacterial type II secretion system protein D; rcpA, CpaC
[Vibrio splendidus LGP32]
Length = 435
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 8/89 (8%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+A G++ V + I D ++ K VV+ GKN+GS + I
Sbjct: 16 AQGSTNLAQGEAKTFSIRGEIASVFISGKNIADYQVIDSNK-VVVFGKNIGSASFIAFDA 74
Query: 91 NNDILLDTEIATFANEQSTVRVYTPGTLS 119
L + + + Y
Sbjct: 75 KGRELFNRLLLVNKS-------YREIEQQ 96
>gi|226193920|ref|ZP_03789521.1| outer membrane protein [Burkholderia pseudomallei Pakistan 9]
gi|225933865|gb|EEH29851.1| outer membrane protein [Burkholderia pseudomallei Pakistan 9]
Length = 566
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ D + +G+ + + +T+ + G ++G+TN+IV G
Sbjct: 97 RESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQA-TMVSPRTLYLVGMSVGTTNMIVQG 155
Query: 90 HNNDI-LLDTEIATFANEQS 108
+ ++D +A A+
Sbjct: 156 KSGACRIID--VAVGADAGG 173
>gi|262173894|ref|ZP_06041571.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio mimicus MB-451]
gi|261891252|gb|EEY37239.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio mimicus MB-451]
Length = 419
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + G + + V V D+ + D +++ K VV+ G G+T++IV +
Sbjct: 1 MNLDQGAAKTINLKRQIDTVFVADNTVADYRIVDQNK-VVVYGVGQGATSVIVYDRGGNE 59
Query: 95 LLDTEIATFANEQSTVRVYTPG 116
+ ++E+ ++R+
Sbjct: 60 IYNSEVVV----NQSLRLLKQT 77
>gi|171317113|ref|ZP_02906316.1| type II and III secretion system protein [Burkholderia ambifaria
MEX-5]
gi|171097747|gb|EDT42574.1| type II and III secretion system protein [Burkholderia ambifaria
MEX-5]
Length = 443
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL--EKEKTVVITGKNLGST 83
+ S I +AVG + ++V VGD + DVL + + +V++T K G+T
Sbjct: 18 ASLASASGTIELAVGAQRQISAGRTLQRVAVGDPAVADVLIMKGSRSGSVLLTAKAPGAT 77
Query: 84 NIIV 87
N+++
Sbjct: 78 NVML 81
>gi|148976662|ref|ZP_01813349.1| Flp pilus assembly protein, secretin CpaC [Vibrionales bacterium
SWAT-3]
gi|145964013|gb|EDK29271.1| Flp pilus assembly protein, secretin CpaC [Vibrionales bacterium
SWAT-3]
Length = 456
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 41 QSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEI 100
+S + +V +GD +++D++ L K V + GK LG+TN++ ++ I
Sbjct: 5 KSTHVVLSGKASKVSLGDPEVLDIVIL-KSNEVFLIGKKLGATNLMAWDARGQLIESINI 63
Query: 101 ATFAN 105
+
Sbjct: 64 EVTHD 68
>gi|283852073|ref|ZP_06369347.1| type II and III secretion system protein [Desulfovibrio sp.
FW1012B]
gi|283572463|gb|EFC20449.1| type II and III secretion system protein [Desulfovibrio sp.
FW1012B]
Length = 527
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + +G+S+ILQ D +V V +I D L + V +TG+ G TN+ + + I
Sbjct: 44 LSLTIGKSVILQSDADVSRVSVAQPEIAD-FVLLSPRQVYVTGRAPGVTNLTLWDKGDKI 102
>gi|300021854|ref|YP_003754465.1| type II and III secretion system protein [Hyphomicrobium
denitrificans ATCC 51888]
gi|299523675|gb|ADJ22144.1| type II and III secretion system protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 550
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
I+I +G+S++++F + V+ + +VD + L + V + GK G +N +
Sbjct: 69 RKSIKIGLGKSVLIEFPNGVRDVMASNPAVVDAVVLSSNR-VFLLGKAPGQSNAFFFSNK 127
Query: 92 NDILLDTEIATFANEQSTVRVYTPG 116
+ L E+ +
Sbjct: 128 GEQLALIELNVDQEGDGLEMLLRRV 152
>gi|323491532|ref|ZP_08096711.1| pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546]
gi|323314108|gb|EGA67193.1| pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546]
Length = 485
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 17 KGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
G+ ASQ + +++ +S + K+V +GD ++D++ L+ ++ + +
Sbjct: 15 SGVTYAASQ-----SGKVVKVPHHKSTHVTLAGKAKRVSLGDPDVLDIVMLKSDE-LFLI 68
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFAN 105
GK LGSTN++ ++ I +
Sbjct: 69 GKKLGSTNLMAWDSRGQLIESINIEVTHD 97
>gi|194288836|ref|YP_002004743.1| pilus assembly secretion protein [Cupriavidus taiwanensis LMG
19424]
gi|193222671|emb|CAQ68674.1| pilus assembly secretion protein [Cupriavidus taiwanensis LMG
19424]
Length = 621
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ + + + VG+S ++ + +G+ +V + +T+ + G+ +G+TN+IV G
Sbjct: 88 RSESSVVVPVGKSQLITLQEPVRNRTLGNPSVVQA-TMVSPQTLYVLGRTVGTTNMIVQG 146
Query: 90 HNNDILLDTEIATFANEQS 108
+ + + A+
Sbjct: 147 RSGSCSI-INVVVNADSGG 164
>gi|330816715|ref|YP_004360420.1| Type II and III secretion system protein [Burkholderia gladioli
BSR3]
gi|327369108|gb|AEA60464.1| Type II and III secretion system protein [Burkholderia gladioli
BSR3]
Length = 477
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGS 82
+S + + +AVG + ++V VGD + D+L ++ V++ GK+ G+
Sbjct: 18 SSWASAAGPEAGVDLAVGAQRQIASGRNLQRVAVGDPAVADILIIKGGGGVMLIGKSAGT 77
Query: 83 TNIIVLGHNNDILLDTEIATFANE------QSTVRVYTPGTLSFLSCTPR 126
TN+++ + + +T RV T G + +S +
Sbjct: 78 TNVMLWERGRSEPTVYTVHVTSGAAHALLNDATPRVDTYGDTTVISGSAN 127
>gi|163801677|ref|ZP_02195575.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4]
gi|159174594|gb|EDP59396.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4]
Length = 456
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ I + + +V + + I D + T+V+ K +G + ++V
Sbjct: 26 TNTYAADRSITLNDGKHISVKQPIGKVFISNPDIADYKVINDT-TLVVFAKGVGHSRLLV 84
Query: 88 LGHNNDILLDTEIATFAN 105
G N D+LL I +
Sbjct: 85 YGANEDVLLSDRIIVDLD 102
>gi|254473733|ref|ZP_05087128.1| type II and III secretion system protein [Pseudovibrio sp. JE062]
gi|211957119|gb|EEA92324.1| type II and III secretion system protein [Pseudovibrio sp. JE062]
Length = 456
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/101 (14%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Query: 12 ETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK 71
+T + + T+ + + G+S++L + + V+V + KI D +
Sbjct: 16 QTNFEATVEVTSQHSVKVRQ---LNVGEGRSIVLNTNEEVRDVLVSNPKIADA-VVRTRN 71
Query: 72 TVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRV 112
V + G G ++++ G+ L + + + +
Sbjct: 72 RVFVFGNETGQASLVLFGNGGKQLASFNLNVQPDPSGLIEL 112
>gi|320155489|ref|YP_004187868.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
pilus assembly [Vibrio vulnificus MO6-24/O]
gi|319930801|gb|ADV85665.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
pilus assembly [Vibrio vulnificus MO6-24/O]
Length = 488
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 14 VRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTV 73
V G+ + + + + +S + K+V +GD +++D++ L+ ++ +
Sbjct: 7 VFTLGVLSVFTAYGATQTGKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSDE-L 65
Query: 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ G+ LGSTN++ +++ I +
Sbjct: 66 FLIGRKLGSTNLMAWDSRGNLIESINIEVTHD 97
>gi|27365106|ref|NP_760634.1| type II/IV secretion system secretin RcpA/CpaC [Vibrio vulnificus
CMCP6]
gi|27361252|gb|AAO10161.1| Type II/IV secretion system secretin RcpA/CpaC, associated with Flp
pilus assembly [Vibrio vulnificus CMCP6]
Length = 488
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 14 VRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTV 73
V G+ + + + + +S + K+V +GD +++D++ L+ ++ +
Sbjct: 7 VFTLGVLSVFTAYGATQTGKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSDE-L 65
Query: 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ G+ LGSTN++ +++ I +
Sbjct: 66 FLIGRKLGSTNLMAWDSRGNLIESINIEVTHD 97
>gi|37680844|ref|NP_935453.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016]
gi|37199593|dbj|BAC95424.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016]
Length = 488
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 14 VRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTV 73
V G+ + + + + +S + K+V +GD +++D++ L+ ++ +
Sbjct: 7 VFTLGVLSVFTAYGATQTGKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSDE-L 65
Query: 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ G+ LGSTN++ +++ I +
Sbjct: 66 FLIGRKLGSTNLMAWDSRGNLIESINIEVTHD 97
>gi|116694140|ref|YP_728351.1| flp pilus assembly protein, secretin [Ralstonia eutropha H16]
gi|113528639|emb|CAJ94986.1| flp pilus assembly protein, secretin [Ralstonia eutropha H16]
Length = 470
Score = 48.1 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL--EKEKTVVITGK 78
+Q N+ ++R+ G ++ ++V VG+ + D L L +V++ K
Sbjct: 35 APRAQAQEAVNARQLRLLAGAQKEIRSAQPVERVAVGNPAVADALVLRTRGAPSVLLVAK 94
Query: 79 NLGSTNIIVLGHNNDILLDTEIATFA 104
G T+++V L + A
Sbjct: 95 QPGVTDVMVWTRGGAEPLTYNVQVDA 120
>gi|302381756|ref|YP_003817579.1| type II and III secretion system protein [Brevundimonas
subvibrioides ATCC 15264]
gi|302192384|gb|ADK99955.1| type II and III secretion system protein [Brevundimonas
subvibrioides ATCC 15264]
Length = 520
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 17 KGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
G T A+ P I + G S + + VIV + + + + + + +
Sbjct: 34 AGSQTVAAGSGPR----LINLPRGTSFAVDLPADARDVIVSNPAVAEAN-VHSPRRITVI 88
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFAN 105
G G T+ + L +L + A
Sbjct: 89 GIAPGETDAVFLDAAGRSILTLRVRVDAG 117
>gi|148256957|ref|YP_001241542.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1]
gi|146409130|gb|ABQ37636.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1]
Length = 489
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+ + +G+S+++ F K V+V D KI + + + I G +G TN++
Sbjct: 56 YLSLGIGKSVVVDFPQDVKDVLVADPKIANA-VVRSARRAYIIGAAVGQTNVVFFDGEGQ 114
Query: 94 ILLDTEIATFANEQST 109
+ +IA +
Sbjct: 115 QVAAYDIAIKRDLNGV 130
>gi|260462607|ref|ZP_05810813.1| type II and III secretion system protein [Mesorhizobium
opportunistum WSM2075]
gi|259031513|gb|EEW32783.1| type II and III secretion system protein [Mesorhizobium
opportunistum WSM2075]
Length = 478
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
R+ + + QS+ +Q + ++VGD+KI D + +T+ + GK G+T + + +
Sbjct: 42 RVFLPMSQSVTIQVNANLGDIVVGDEKIADAQPMTD-RTLYVIGKGAGTTTVNLFSTDKR 100
Query: 94 ILLDTEIATFANEQSTVRVYTPGT 117
L +I + + +
Sbjct: 101 SLGVIQIEVGVDVSDMAQAIRQVS 124
>gi|84387245|ref|ZP_00990266.1| Flp pilus assembly protein [Vibrio splendidus 12B01]
gi|84377892|gb|EAP94754.1| Flp pilus assembly protein [Vibrio splendidus 12B01]
Length = 484
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
+ + + + +S + +V +GD +++D++ L K + + GK LG
Sbjct: 15 STASVAALQTGKTVTVPHHKSTHVVLSGKAAKVSLGDPEVLDIVIL-KSNELFLIGKKLG 73
Query: 82 STNIIVLGHNNDILLDTEIATFAN 105
+TN++ ++ I +
Sbjct: 74 ATNLMAWDSRGQLIESINIEVTHD 97
>gi|83718419|ref|YP_443059.1| type II/III secretion system protein [Burkholderia thailandensis
E264]
gi|167582062|ref|ZP_02374936.1| type II/III secretion system protein [Burkholderia thailandensis
TXDOH]
gi|167620224|ref|ZP_02388855.1| type II/III secretion system protein [Burkholderia thailandensis
Bt4]
gi|257139289|ref|ZP_05587551.1| type II/III secretion system protein [Burkholderia thailandensis
E264]
gi|83652244|gb|ABC36307.1| type II/III secretion system protein [Burkholderia thailandensis
E264]
Length = 441
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK-TVVITGKNLGSTN 84
I +A G + ++V +GD + DV+ ++ + V++ K GSTN
Sbjct: 19 AARAAEMGTIELATGAQRQIAVGRGVQRVAIGDPSVADVVVIKGGRGGVLLVAKAAGSTN 78
Query: 85 IIVLGHN 91
++V
Sbjct: 79 LMVWERG 85
>gi|149927033|ref|ZP_01915291.1| type II/III secretion system protein [Limnobacter sp. MED105]
gi|149824254|gb|EDM83474.1| type II/III secretion system protein [Limnobacter sp. MED105]
Length = 473
Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 6/111 (5%)
Query: 16 KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE------K 69
+ + ++ G ++ +P +V +GD I V L+ K
Sbjct: 26 PQVAVGQTPAAPSSAAPFVLTLSTGFQKVISLPGIPARVSIGDPTIASVTVLKPTDRGGK 85
Query: 70 EKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF 120
V++TG GST++++ + ++ T+ L
Sbjct: 86 NAGVLVTGLKTGSTSLLIWDRGASMARVITVSVTGKAAETISTLKDLNLET 136
>gi|27375777|ref|NP_767306.1| hypothetical protein bll0666 [Bradyrhizobium japonicum USDA 110]
gi|27348915|dbj|BAC45931.1| bll0666 [Bradyrhizobium japonicum USDA 110]
Length = 505
Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 17 KGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
+ T A KT + + VG+S+++ K V+V D KI + + + I
Sbjct: 58 ASVGTIAPAKTR-----FLSLGVGKSVVIDLPREVKDVLVADPKIANA-VIRSAQRAYII 111
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPG 116
G +G TN++ + + +IA +
Sbjct: 112 GGQVGQTNVVFFTADGQQVAAYDIAVKRDLNGMRAALRQS 151
>gi|221213139|ref|ZP_03586115.1| bacterial type II/III secretion system protein [Burkholderia
multivorans CGD1]
gi|221167352|gb|EED99822.1| bacterial type II/III secretion system protein [Burkholderia
multivorans CGD1]
Length = 443
Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 18/111 (16%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT--VVITGKNLGST 83
+ I +AVG + ++V VGD I DVL ++ ++ V++ K G+T
Sbjct: 18 ASLASAGGTIELAVGAQRQISAGRALQRVAVGDPAIADVLIMKGSRSGAVLVIAKAPGAT 77
Query: 84 NII---------------VLGHNNDILLDTEIATFANEQSTVRVYTPGTLS 119
N++ V+ +LD N V S
Sbjct: 78 NVMLWERGRDEPTVWNVEVVDAAAHAVLDDS-TPRVNTYGGTSVLRGTAAS 127
>gi|319782173|ref|YP_004141649.1| type II and III secretion system protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317168061|gb|ADV11599.1| type II and III secretion system protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 481
Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
RI + + QS+ +Q ++VGD+KI D + +T+ + GK G+T + + +
Sbjct: 42 RIFLPMSQSVTIQVSANLGDIVVGDEKIADAQPMTD-RTLYVIGKGAGTTTVNLFSTDKR 100
Query: 94 ILLDTEIATFANEQSTVRVYTPG 116
L +I + +
Sbjct: 101 SLGALQIEVGVDVSDMAQAIRQV 123
>gi|221197781|ref|ZP_03570827.1| bacterial type II/III secretion system protein [Burkholderia
multivorans CGD2M]
gi|221204661|ref|ZP_03577678.1| bacterial type II/III secretion system protein [Burkholderia
multivorans CGD2]
gi|221175518|gb|EEE07948.1| bacterial type II/III secretion system protein [Burkholderia
multivorans CGD2]
gi|221181713|gb|EEE14114.1| bacterial type II/III secretion system protein [Burkholderia
multivorans CGD2M]
Length = 443
Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 18/111 (16%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT--VVITGKNLGST 83
+ I +AVG + ++V VGD I DVL ++ ++ V++ K G+T
Sbjct: 18 ASLASAGGTIELAVGAQRQISAGRALQRVAVGDPAIADVLIMKGSRSGAVLVIAKAPGAT 77
Query: 84 NII---------------VLGHNNDILLDTEIATFANEQSTVRVYTPGTLS 119
N++ V+ +LD N V S
Sbjct: 78 NVMLWERGRDEPTVWNVEVVDAAAHAVLDDS-TPRVNTYGGTSVLRGTAAS 127
>gi|148975962|ref|ZP_01812751.1| hypothetical Flp pilus assembly protein [Vibrionales bacterium
SWAT-3]
gi|145964707|gb|EDK29960.1| hypothetical Flp pilus assembly protein [Vibrionales bacterium
SWAT-3]
Length = 456
Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
T + I + +QF QV + + IVD + T+V+ ++G + +
Sbjct: 24 STTNTFAADRSITLNDGQHIQFKSPIGQVFINNPSIVDYKIINDN-TLVVFANSVGQSRL 82
Query: 86 IVLGHNNDILLDTEIATFANEQSTVR 111
IV G ++D+LL I N R
Sbjct: 83 IVYGVDDDVLLSDRIIVDLNLTDIRR 108
>gi|148557761|ref|YP_001265343.1| type II and III secretion system protein [Sphingomonas wittichii
RW1]
gi|148502951|gb|ABQ71205.1| type II and III secretion system protein [Sphingomonas wittichii
RW1]
Length = 526
Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 1/101 (0%)
Query: 14 VRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTV 73
VR T S +++G ++ + V DDKI DV + +
Sbjct: 28 VRPSRGAAAVRTATIGKPSETTTLSIGSGQMIALSAPISDLFVADDKIADVQ-VRSTTQL 86
Query: 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYT 114
+ GK G T + +++ + + +N S +
Sbjct: 87 YLFGKGAGETAVYATDKAGNVVWSSIVRVGSNITSVDTMLK 127
>gi|83749638|ref|ZP_00946621.1| GspD-related protein; cpaC1 [Ralstonia solanacearum UW551]
gi|83723699|gb|EAP70894.1| GspD-related protein; cpaC1 [Ralstonia solanacearum UW551]
Length = 401
Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + VG+S ++Q + VG+ IV + L +T+ + G+ +G+TN+IV G +
Sbjct: 100 VTVPVGKSTMVQLPEPVRNRTVGNPHIVQAM-LVSPQTLYLLGQEVGTTNMIVQGRSGSC 158
Query: 95 LLDTEIATFANEQS 108
+ +++ A+
Sbjct: 159 SV-IDVSVGADPGG 171
>gi|150377247|ref|YP_001313842.1| type II and III secretion system protein [Sinorhizobium medicae
WSM419]
gi|150031794|gb|ABR63909.1| type II and III secretion system protein [Sinorhizobium medicae
WSM419]
Length = 466
Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 18 GIPTTASQKTPEDNSN---RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVV 74
G +A+ + E +SN IR+A G+++ ++ ++++GD +I V L ++
Sbjct: 25 GSSASANGDSVEISSNFSRSIRVAKGKTVTIRAVQRFDEIVIGDPEIATVTPLTD-RSFY 83
Query: 75 ITGKNLGSTNIIVLGHNNDILLDTEIATFANE---QSTVR 111
I G LGST++ + + + +I + ST+R
Sbjct: 84 ILGNELGSTSVTIFDAEKNPVGIIDIEVTLDTKLLSSTIR 123
>gi|261252087|ref|ZP_05944660.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio orientalis CIP 102891]
gi|260935478|gb|EEX91467.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio orientalis CIP 102891]
Length = 480
Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 17 KGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
GI A+Q + + + +S + K+V +GD ++D++ L+ ++ V +
Sbjct: 8 SGISFAATQ-----SGKIVTVPHHKSTHVTLAGKAKRVSLGDPDVLDIVMLKSDE-VFLI 61
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFAN 105
GK LGSTN++ ++ I +
Sbjct: 62 GKKLGSTNLMAWDSRGQLIESINIEVTHD 90
>gi|207744158|ref|YP_002260550.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
IPO1609]
gi|206595562|emb|CAQ62489.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
IPO1609]
Length = 626
Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + VG+S ++Q + VG+ IV + L +T+ + G+ +G+TN+IV G +
Sbjct: 100 VTVPVGKSTMVQLPEPVRNRTVGNPHIVQAM-LVSPQTLYLLGQEVGTTNMIVQGRSGSC 158
Query: 95 LLDTEIATFANEQS 108
+ +++ A+
Sbjct: 159 SV-IDVSVGADPGG 171
>gi|197335194|ref|YP_002155269.1| general secretion pathway protein D [Vibrio fischeri MJ11]
gi|197316684|gb|ACH66131.1| general secretion pathway protein D [Vibrio fischeri MJ11]
Length = 436
Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
++ G + + V + + K+ D ++K K VV+ G+ +G + I
Sbjct: 21 RAKEIENLSAGDAKSITTTTEIGSVFISNPKVADYKIIDKYK-VVLFGREVGDSVFIAFD 79
Query: 90 HNNDILLDTEIATFANEQS 108
LL+ +I N
Sbjct: 80 VQGRELLNKKIIVSRNYSG 98
>gi|187923645|ref|YP_001895287.1| type II and III secretion system protein [Burkholderia phytofirmans
PsJN]
gi|187714839|gb|ACD16063.1| type II and III secretion system protein [Burkholderia phytofirmans
PsJN]
Length = 468
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT--VVITGKNLGSTNIIVLGHNN 92
I + VG + ++V +GD + DVL ++ +K V++ GK G+TN+++ +
Sbjct: 54 IDLTVGAQRQIAVGHTLQRVAIGDPSVADVLIIKGDKRGGVLLVGKAAGTTNLMLWSRDR 113
Query: 93 DILLDTEIATFANEQSTV 110
D L + +++
Sbjct: 114 DAPLQYTVNVTTPAAASL 131
>gi|296156489|ref|ZP_06839327.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
gi|295893088|gb|EFG72868.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
Length = 599
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
P + + I VG+S ++ K VG+ IV + L +T+ + G ++G+TN+IV
Sbjct: 112 PVAEHSSVTIPVGKSAMVDVREPVKSRTVGNPSIVQAM-LVSPQTLYLLGSDVGTTNMIV 170
Query: 88 LGHNND-ILLDTEIATFANEQS 108
G + ++D ++ A+
Sbjct: 171 QGRSGSCTIID--VSVGADPGG 190
>gi|296158794|ref|ZP_06841623.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
gi|295890999|gb|EFG70788.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
Length = 474
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT--VVITGKNLGSTNIIVLGHN 91
RI + VG L ++V +GD + DVL ++ +K V++ GK G+TN+++ +
Sbjct: 59 RIALTVGAQQQLAVGHTLQRVAIGDPSVADVLIIKGDKRGGVLLVGKAAGTTNLMLWARD 118
Query: 92 NDILLDTEIATFANEQSTV 110
D L + +++
Sbjct: 119 RDAPLQYTVDVTTPAAASL 137
>gi|254255254|ref|ZP_04948570.1| Flp pilus assembly protein secretin CpaC [Burkholderia dolosa
AUO158]
gi|124900991|gb|EAY71741.1| Flp pilus assembly protein secretin CpaC [Burkholderia dolosa
AUO158]
Length = 682
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+S + + +G+SL++ + +G+ + + +T+ I G ++G+TN+IV G
Sbjct: 95 RDSTSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQA-TMVSPQTLYILGMSVGTTNMIVQG 153
Query: 90 HNNDILLDTEIATFANEQS 108
+ + ++A A+
Sbjct: 154 KSGACRV-IDVAVGADAAG 171
>gi|167570105|ref|ZP_02362979.1| type II/III secretion system protein [Burkholderia oklahomensis
C6786]
Length = 434
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK-TVVITGKNLGSTN 84
I +A G + ++V VGD + DVL ++ + +V++ K GST+
Sbjct: 12 AARAAEMGTIELATGAQRQVSVGRNVQRVAVGDPNVADVLVVKGGRGSVLLVAKAAGSTS 71
Query: 85 IIVLGHNNDILLDTEIATFANEQSTV 110
++V D + + +
Sbjct: 72 LMVWERGRDEPAVYTVNVVSGAARAL 97
>gi|86159249|ref|YP_466034.1| type II and III secretion system protein [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85775760|gb|ABC82597.1| type II and III secretion system protein [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 487
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 13/88 (14%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Query: 9 IKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE 68
+ + + T + + + GQ+ +L ++ V + + D+ +
Sbjct: 13 VAGRAAAAQDVVPTMRIDREVGAARSMSLEAGQNRLLVVSDQIGRIAVANPDVADLKVVT 72
Query: 69 KEKTVVITGKNLGSTNIIVLGHNNDILL 96
+ + +T K +GST++ + +N L+
Sbjct: 73 PYQVL-LTAKGIGSTDLTLWDRDNHPLV 99
>gi|207728106|ref|YP_002256500.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
MolK2]
gi|206591351|emb|CAQ56963.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
MolK2]
Length = 626
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + VG+S ++Q + VG+ IV + L +T+ + G+ +G+TN+IV G +
Sbjct: 100 VTVPVGKSTMVQLPEPVRNRTVGNPHIVQAM-LVSPQTLYLLGQEVGTTNMIVQGRSGSC 158
Query: 95 LLDTEIATFANEQS 108
+ +++ A+
Sbjct: 159 SV-IDVSVGADPGG 171
>gi|167562915|ref|ZP_02355831.1| type II/III secretion system protein [Burkholderia oklahomensis
EO147]
Length = 432
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK-TVVITGKNLGSTN 84
I +A G + ++V VGD + DVL ++ + +V++ K GST+
Sbjct: 10 AARAAEMGTIELATGAQRQVSVGRNVQRVAVGDPNVADVLVVKGGRGSVLLVAKAAGSTS 69
Query: 85 IIVLGHNNDILLDTEIATFANEQSTV 110
++V D + + +
Sbjct: 70 LMVWERGRDEPAVYTVNVVSGAARAL 95
>gi|326797327|ref|YP_004315147.1| type II and III secretion system protein [Marinomonas mediterranea
MMB-1]
gi|326548091|gb|ADZ93311.1| type II and III secretion system protein [Marinomonas mediterranea
MMB-1]
Length = 464
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S ++++ V Q +L +V++ + ++ + V + K G T + L
Sbjct: 46 AVSGQVKLHVNQGTLLNLPKAASKVLIANPEVA-SFQMPSPDNVFVFAKAPGDTTLYALD 104
Query: 90 HNNDILLDTEIATFANEQSTVR 111
NND+++ + + + + R
Sbjct: 105 ENNDVIIAVTLTSGYDLEGLTR 126
>gi|328953626|ref|YP_004370960.1| type II and III secretion system protein [Desulfobacca acetoxidans
DSM 11109]
gi|328453950|gb|AEB09779.1| type II and III secretion system protein [Desulfobacca acetoxidans
DSM 11109]
Length = 503
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Query: 9 IKNETVRKKGIPTTASQK-----TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVD 63
I A+Q ED IR+ VG+S +L+ ++ V D ++ D
Sbjct: 27 ILGSAAVYSPPSVLAAQALLERVKDEDLEQVIRLRVGRSKVLRTSFTISRISVADPEVAD 86
Query: 64 VLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
++ + E+ V I G G TNI + G ++ A+
Sbjct: 87 IIMI-SEREVYINGNAPGVTNISLWGK--RSFSSAKVTVEAD 125
>gi|206559894|ref|YP_002230658.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
gi|198035935|emb|CAR51827.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
Length = 443
Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK-TVVITGKN 79
D S I +A+G + ++V VGD + DVL ++ + V++ KN
Sbjct: 16 AMPPLSDAADTSGTISLAIGAQRQIATGRALQRVAVGDPSVADVLVVKGGRGGVLLVAKN 75
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQSTV 110
G+TN+++ D + + +
Sbjct: 76 AGATNVMIWERGRDEPTVYNVNVTSGAARAL 106
>gi|107022594|ref|YP_620921.1| type II and III secretion system protein [Burkholderia cenocepacia
AU 1054]
gi|116689543|ref|YP_835166.1| type II and III secretion system protein [Burkholderia cenocepacia
HI2424]
gi|170732847|ref|YP_001764794.1| type II and III secretion system protein [Burkholderia cenocepacia
MC0-3]
gi|105892783|gb|ABF75948.1| type II and III secretion system protein [Burkholderia cenocepacia
AU 1054]
gi|116647632|gb|ABK08273.1| type II and III secretion system protein [Burkholderia cenocepacia
HI2424]
gi|169816089|gb|ACA90672.1| type II and III secretion system protein [Burkholderia cenocepacia
MC0-3]
Length = 443
Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK-TVVITGKN 79
D S I +A+G + ++V VGD + DVL ++ + V++ KN
Sbjct: 16 AMPPLSDAADTSGTISLAIGAQRQIATGRALQRVAVGDPSVADVLVVKGGRGGVLLVAKN 75
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQSTV 110
G+TN+++ D + + +
Sbjct: 76 AGATNVMIWERGRDEPTVYNVNVTSGAARAL 106
>gi|220918104|ref|YP_002493408.1| type II and III secretion system protein [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219955958|gb|ACL66342.1| type II and III secretion system protein [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 477
Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + GQ+ +L +V V D + D+ + + + +T K+ G+T++ + +N+
Sbjct: 41 LALEAGQNRLLIISEEIGRVAVADPSVADLKVVTTNQLL-LTAKSSGTTDLTLWNRSNEP 99
Query: 95 LL 96
L+
Sbjct: 100 LV 101
>gi|258621447|ref|ZP_05716481.1| Flp pilus assembly protein [Vibrio mimicus VM573]
gi|262171232|ref|ZP_06038910.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio mimicus MB-451]
gi|258586835|gb|EEW11550.1| Flp pilus assembly protein [Vibrio mimicus VM573]
gi|261892308|gb|EEY38294.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio mimicus MB-451]
Length = 488
Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/92 (15%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 14 VRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTV 73
+ G+ + + + + + +S + K+V +GD +++D++ L+ ++ +
Sbjct: 7 IFTLGVLSAFTAQGAIQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSDE-L 65
Query: 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ G+ LGSTN++ +++ + +
Sbjct: 66 FLIGRKLGSTNLMAWDSRGNLIESLNVEVTHD 97
>gi|258627504|ref|ZP_05722285.1| Flp pilus assembly protein [Vibrio mimicus VM603]
gi|258580310|gb|EEW05278.1| Flp pilus assembly protein [Vibrio mimicus VM603]
Length = 488
Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/92 (15%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 14 VRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTV 73
+ G+ + + + + + +S + K+V +GD +++D++ L+ ++ +
Sbjct: 7 IFTLGVLSAFTAQGAIQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSDE-L 65
Query: 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ G+ LGSTN++ +++ + +
Sbjct: 66 FLIGRKLGSTNLMAWDSRGNLIESLNVEVTHD 97
>gi|262165919|ref|ZP_06033656.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio mimicus VM223]
gi|262025635|gb|EEY44303.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
pilus assembly [Vibrio mimicus VM223]
Length = 488
Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/92 (15%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 14 VRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTV 73
+ G+ + + + + + +S + K+V +GD +++D++ L+ ++ +
Sbjct: 7 IFTLGVLSAFTARGAIQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSDE-L 65
Query: 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ G+ LGSTN++ +++ + +
Sbjct: 66 FLIGRKLGSTNLMAWDSRGNLIESLNVEVTHD 97
>gi|113866744|ref|YP_725233.1| flp pilus assembly protein secretin [Ralstonia eutropha H16]
gi|113525520|emb|CAJ91865.1| flp pilus assembly protein secretin [Ralstonia eutropha H16]
Length = 618
Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ + + + VG+S ++ + +G+ +V + +T+ + G+ +G+TN+IV G
Sbjct: 89 RSESSVMVPVGKSQLITLQEPVRNRTLGNPNVVQA-TMVSPQTLYVLGRAVGTTNMIVQG 147
Query: 90 HNNDILLDTEIATFANEQS 108
+ + + A+
Sbjct: 148 RSGSCSI-INVVVNADAGG 165
>gi|197123317|ref|YP_002135268.1| type II and III secretion system protein [Anaeromyxobacter sp. K]
gi|196173166|gb|ACG74139.1| type II and III secretion system protein [Anaeromyxobacter sp. K]
Length = 484
Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 12/66 (18%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+ + + GQ+ +L ++ V + + D+ + + + +T K +GST++ +
Sbjct: 35 AARSMSLEAGQNRLLVVSDQIGRIAVANPDVADLKVVTPYQVL-LTAKGIGSTDLTLWDR 93
Query: 91 NNDILL 96
+N L+
Sbjct: 94 DNHPLV 99
>gi|325525578|gb|EGD03368.1| flp type pilus assembly protein [Burkholderia sp. TJI49]
Length = 545
Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S+ + + +G+SL++ + +G+ + + +T+ I G ++G+TN+IV G
Sbjct: 94 RESSSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQA-TMVSPQTLYILGLSVGTTNMIVQG 152
Query: 90 HNNDILLDTEIATFANEQS 108
+ + ++A A+
Sbjct: 153 RSGACRV-IDVAVGADAGG 170
>gi|307300715|ref|ZP_07580490.1| type II and III secretion system protein [Sinorhizobium meliloti
BL225C]
gi|306904249|gb|EFN34834.1| type II and III secretion system protein [Sinorhizobium meliloti
BL225C]
Length = 466
Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 18/122 (14%)
Query: 18 GIPTTASQKTPE-----DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
G+ AS + S I++A G+++ ++ ++++GD +I V L ++
Sbjct: 23 GVSPPASANGDSVEISSNFSRSIKVAKGKTVTIRAVQRFDEIVIGDPEIATVTPLTD-RS 81
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFANE------------QSTVRVYTPGTLSF 120
I G LGST++ + + + +I + S+V+V +
Sbjct: 82 FYILGNELGSTSVTIFDAEKNPVGIIDIEVTLDTKLLSSTIRQSVPGSSVKVTSANGRIV 141
Query: 121 LS 122
LS
Sbjct: 142 LS 143
>gi|218710406|ref|YP_002418027.1| Flp pilus assembly protein [Vibrio splendidus LGP32]
gi|218323425|emb|CAV19602.1| Flp pilus assembly protein [Vibrio splendidus LGP32]
Length = 484
Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 33 NRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNN 92
+ + +S + +V +GD ++D++ L K + + GK LG+TN++
Sbjct: 26 KTVTVPHHKSTHVVLSGKASKVSLGDPDVLDIVML-KSSELFLIGKKLGATNLMAWDSRG 84
Query: 93 DILLDTEIATFAN 105
++ I +
Sbjct: 85 QLIESINIEVTHD 97
>gi|114799407|ref|YP_759869.1| type II/III secretion system protein [Hyphomonas neptunium ATCC
15444]
gi|114739581|gb|ABI77706.1| type II/III secretion system protein [Hyphomonas neptunium ATCC
15444]
Length = 432
Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
+Q++ ++++ + G+S +++ D ++V D +I + + ++ + GK G T
Sbjct: 25 TQRSAPAGADQLELRRGKSAVVEADAAFATIVVADPEIAEAMP-TSNRSFFVRGKKPGGT 83
Query: 84 NIIVLGHNNDILLDTEIATF 103
+++ I E+
Sbjct: 84 TVLIYDEAGAIAELIEVEVK 103
>gi|172065273|ref|YP_001815985.1| type II and III secretion system protein [Burkholderia ambifaria
MC40-6]
gi|171997515|gb|ACB68432.1| type II and III secretion system protein [Burkholderia ambifaria
MC40-6]
Length = 656
Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
++ + + +G+SL++ + +G+ + + +T+ I G ++G+TN+IV G
Sbjct: 95 RDATSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQA-TMVSPQTLYILGLSVGTTNMIVQG 153
Query: 90 HNNDILLDTEIATFANEQS 108
+ + ++A A+
Sbjct: 154 RSGACRV-IDVAVGADAGG 171
>gi|238782881|ref|ZP_04626910.1| Type II/III secretion system protein [Yersinia bercovieri ATCC
43970]
gi|238716304|gb|EEQ08287.1| Type II/III secretion system protein [Yersinia bercovieri ATCC
43970]
Length = 426
Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ N+ + I+ G+S I++ + V V + D + K +V K+ G+T II+
Sbjct: 16 KANAKSVYISPGESYIIKTEAEIDTVFVSSAAVADYELVNKNSIIVY-AKSEGTTEIILF 74
Query: 89 GHNNDILLDTEIAT 102
+ +L I
Sbjct: 75 DDKHQVLAKKTILV 88
>gi|193782542|ref|NP_435332.2| PilQ2 pilus assembly protein [Sinorhizobium meliloti 1021]
gi|307319126|ref|ZP_07598556.1| type II and III secretion system protein [Sinorhizobium meliloti
AK83]
gi|193072997|gb|AAK64744.2| PilQ2 pilus assembly protein [Sinorhizobium meliloti 1021]
gi|306895233|gb|EFN25989.1| type II and III secretion system protein [Sinorhizobium meliloti
AK83]
Length = 466
Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 18/122 (14%)
Query: 18 GIPTTASQKTPE-----DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
G+ AS + S I++A G+++ ++ ++++GD +I V L ++
Sbjct: 23 GVSPPASANGDSVEISSNFSRSIKVAKGKTVTIRAVQRFDEIVIGDPEIATVTPLTD-RS 81
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFANE------------QSTVRVYTPGTLSF 120
I G LGST++ + + + +I + S+V+V +
Sbjct: 82 FYILGNELGSTSVTIFDAEKNPVGIIDIEVTLDTKLLSSTIRQSVPGSSVKVTSANGRIV 141
Query: 121 LS 122
LS
Sbjct: 142 LS 143
>gi|300694111|ref|YP_003750084.1| pilus assembly protein (cpac) [Ralstonia solanacearum PSI07]
gi|299076148|emb|CBJ35461.2| putative pilus assembly protein (cpaC) [Ralstonia solanacearum
PSI07]
Length = 462
Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE---KEKTVVIT 76
P +Q P D + + + G ++ +++ +G+ ++ D L L+ +++I
Sbjct: 23 PGVHAQSMPADQA--LHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGHGAAGSLLIV 80
Query: 77 GKNLGSTNIIVLGHNNDIL 95
K G+ NI+V +
Sbjct: 81 AKKPGAANIMVWTQGGTAI 99
>gi|167584957|ref|ZP_02377345.1| type II and III secretion system protein [Burkholderia ubonensis
Bu]
Length = 536
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+S+++ + +G+ + + +T+ I G ++G+TN+IV G
Sbjct: 84 RESTSVSVPLGKSMLVPMPEPVRNRTIGNPAVAQA-TMVSPQTLYILGLSVGTTNMIVQG 142
Query: 90 HNNDI-LLDTEIATFANEQS 108
+ ++D +A A+
Sbjct: 143 KSGACRIID--VAVGADAGG 160
>gi|145299828|ref|YP_001142669.1| flp pilus assembly protein FlpC [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142852600|gb|ABO90921.1| flp pilus assembly protein FlpC [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 461
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 19 IPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK 78
+ T A + + + QS +L FD + V + ++V V + ++ + I G+
Sbjct: 2 LRTLAMVPLWAVAAESLTLTPEQSTLLNFDEPVRDAFVANSELVRVHSPSDQQLL-IYGR 60
Query: 79 NLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTP 115
+G T+++V + L + A+ ++
Sbjct: 61 KVGRTDLVVTAQDGRTLGHYRVQVVADLAPLKQLARQ 97
>gi|91783011|ref|YP_558217.1| putative outer membrane channel signal peptide protein, CpaC like
[Burkholderia xenovorans LB400]
gi|91686965|gb|ABE30165.1| Putative outer membrane channel signal peptide protein, CpaC like
protein [Burkholderia xenovorans LB400]
Length = 454
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT--VVITGKNLGSTNIIVLG 89
+ RI + VG L +++ +GD + DVL ++ +K V++ GK G+TN+++
Sbjct: 37 AQRIALTVGAQQQLAVGHTLQRIAIGDPSVADVLIIKGDKRGGVLLVGKAAGTTNLMLWA 96
Query: 90 HNNDILLDTEIATFANEQSTV 110
+ D L + +++
Sbjct: 97 RDRDAPLQYTVDVTTPAAASL 117
>gi|299069498|emb|CBJ40767.1| putative pilus assembly protein (cpaC) [Ralstonia solanacearum
CMR15]
Length = 467
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE---KEKTVVITG 77
A+ + + G ++ +++ +G+ ++ D L L+ +++I
Sbjct: 35 APAAHAQGMPAGQVLHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGHGAAGSLLIIA 94
Query: 78 KNLGSTNIIVLGHNNDIL 95
K G+ NI+V L
Sbjct: 95 KKPGAANILVWTQGGTAL 112
>gi|300704930|ref|YP_003746533.1| pilus assembly secretion protein [Ralstonia solanacearum CFBP2957]
gi|299072594|emb|CBJ43944.1| pilus assembly secretion protein [Ralstonia solanacearum CFBP2957]
Length = 622
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+ + VG+S ++Q + VG+ IV + L +T+ + G+ +G+TN+IV G +
Sbjct: 100 VTVPVGKSTMVQLPEPVRNRTVGNPHIVQAM-LVSPQTLYLLGQEVGTTNMIVQGRSGS 157
>gi|59711120|ref|YP_203896.1| general secretion pathway protein D [Vibrio fischeri ES114]
gi|59479221|gb|AAW85008.1| general secretion pathway protein D [Vibrio fischeri ES114]
Length = 436
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
++ G + + V + + K+ D ++K K VV+ G+ +G + I
Sbjct: 21 RAKEIENLSAGDAKSITTTTEIGSVFISNPKVADYKIIDKYK-VVLFGREVGDSVFIAFD 79
Query: 90 HNNDILLDTEIATFANEQS 108
LL+ +I N
Sbjct: 80 VQGRELLNKKIIVSKNYSG 98
>gi|73542329|ref|YP_296849.1| type II and III secretion system protein:transport-associated
[Ralstonia eutropha JMP134]
gi|72119742|gb|AAZ62005.1| type II and III secretion system protein:Transport-associated
[Ralstonia eutropha JMP134]
Length = 633
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ + + VG+S ++ K +G+ +V + +T+ + G+ +G+TN+IV G
Sbjct: 89 RQESSVIVPVGKSQLITLQEPVKNRTLGNPNVVQA-TMVSAQTLYVLGRTVGTTNMIVQG 147
Query: 90 HNNDILLDTEIATFANEQS 108
+ + + A+
Sbjct: 148 RSGSCSI-INVVVNADAGG 165
>gi|115361033|ref|YP_778170.1| type II and III secretion system protein [Burkholderia ambifaria
AMMD]
gi|115286361|gb|ABI91836.1| type II and III secretion system protein [Burkholderia ambifaria
AMMD]
Length = 657
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
++ + + +G+SL++ + +G+ + + +T+ I G ++G+TN+IV G
Sbjct: 95 RDATSVTVPLGKSLLVPMPEPVRNRTIGNPAVAQA-TMVSPQTLYILGLSVGTTNMIVQG 153
Query: 90 HNNDILLDTEIATFANEQS 108
+ + ++A A+
Sbjct: 154 RSGACRV-IDVAVGADAGG 171
>gi|118581113|ref|YP_902363.1| type II and III secretion system protein [Pelobacter propionicus
DSM 2379]
gi|118503823|gb|ABL00306.1| type II and III secretion system protein [Pelobacter propionicus
DSM 2379]
Length = 386
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
R ++ V +S+++ ++V + + I D+L + + + + G LG+T++IV +
Sbjct: 31 RTQVIVNKSVLVNLKNPAERVSIANPAIADLLLIT-PRQIQLNGLALGATSLIVWEKGGE 89
Query: 94 ILLDTEIATFANE 106
L ++ N
Sbjct: 90 KPLFFDVNVVGNT 102
>gi|94309592|ref|YP_582802.1| type II and III secretion system protein [Cupriavidus metallidurans
CH34]
gi|93353444|gb|ABF07533.1| Flp pilus assembly protein secretin CpaC [Cupriavidus metallidurans
CH34]
Length = 620
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
N + + + +G+S ++ + +G+ +V + +T+ + G+++G+TN+IV G
Sbjct: 87 RNESSVIVPIGKSQLIPLPEPVRNRTLGNPNVVQA-TMVSPQTLYVLGRSVGTTNMIVQG 145
Query: 90 HNNDILLDTEIATFANEQS 108
+ + + A+
Sbjct: 146 RSGGCSI-INVVVNADSNG 163
>gi|297581608|ref|ZP_06943530.1| flp pilus assembly protein [Vibrio cholerae RC385]
gi|297534015|gb|EFH72854.1| flp pilus assembly protein [Vibrio cholerae RC385]
Length = 469
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+ + + V Q+ I+ D + V V D KIV V+ + V+++GK++GST+++++G
Sbjct: 21 AESPLVLHVNQNQIITVDGDIQDVFVSDPKIV-VVHAPSSRHVMVSGKDIGSTDLLIMGE 79
Query: 91 NNDILLDTEIATFAN 105
N L ++ A+
Sbjct: 80 NAQTLAHYKLNVNAD 94
>gi|238790280|ref|ZP_04634054.1| Flp pilus assembly protein, secretin CpaC [Yersinia frederiksenii
ATCC 33641]
gi|238721630|gb|EEQ13296.1| Flp pilus assembly protein, secretin CpaC [Yersinia frederiksenii
ATCC 33641]
Length = 463
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
S I + G++ L+ + V + + + D + EK VVI + G ++ +
Sbjct: 32 SAFSQDIYMEKGEARTLKVNAAVDTVFISNPDVADYEVI-DEKQVVIFARENGRASLEIY 90
Query: 89 GHNNDI-LLDTEIAT 102
G +N+ L+ I
Sbjct: 91 GGDNNATLMTMSIIV 105
>gi|317491683|ref|ZP_07950118.1| type II and III secretion system protein [Enterobacteriaceae
bacterium 9_2_54FAA]
gi|316920117|gb|EFV41441.1| type II and III secretion system protein [Enterobacteriaceae
bacterium 9_2_54FAA]
Length = 467
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+ + + + G+S ++Q + + + K+ D + E+ V++ K+ G T++I
Sbjct: 34 SVHTRAQELYMDAGESQVIQVNGNIDTIFISAPKVADYEII-GERGVMVYAKSEGKTDLI 92
Query: 87 VLGHNNDILLDTEIAT 102
N D L+ T +
Sbjct: 93 AFDKNGDQLVKTTLVV 108
>gi|88866586|gb|ABD57354.1| FlpC [Aeromonas salmonicida subsp. salmonicida A449]
Length = 479
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 19 IPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK 78
+ T A + + + QS +L FD + V + ++V V + ++ + I G+
Sbjct: 20 LRTLAMVPLWAVAAESLTLTPEQSTLLNFDEPVRDAFVANSELVRVHSPSDQQLL-IYGR 78
Query: 79 NLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTP 115
+G T+++V + L + A+ ++
Sbjct: 79 KVGRTDLVVTAQDGRTLGHYRVQVVADLAPLKQLARQ 115
>gi|307548787|dbj|BAJ19109.1| RcpA [Aggregatibacter actinomycetemcomitans]
gi|307548802|dbj|BAJ19123.1| RcpA [Aggregatibacter actinomycetemcomitans]
Length = 460
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 30/107 (28%), Gaps = 5/107 (4%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
+ + + + G + ++Q + V I D L+ T +I K
Sbjct: 17 AVLGAVFSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDN-TFIIYAKE 75
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPR 126
G T + G + L + S V S P
Sbjct: 76 EGRTEVTAFGADGRPLTSDTVNV----DSVVTSIADTNKQLKSRFPN 118
>gi|307133496|dbj|BAJ19008.1| RcpA [Aggregatibacter actinomycetemcomitans]
Length = 460
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 30/107 (28%), Gaps = 5/107 (4%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
+ + + + G + ++Q + V I D L+ T +I K
Sbjct: 17 AVLGAVFSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDN-TFIIYAKE 75
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPR 126
G T + G + L + S V S P
Sbjct: 76 EGRTEVTAFGADGRPLTSDTVNV----DSVVTSIADTNKQLKSRFPN 118
>gi|26000712|gb|AAN75208.1| RcpA [Aggregatibacter actinomycetemcomitans]
Length = 460
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 30/107 (28%), Gaps = 5/107 (4%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
+ + + + G + ++Q + V I D L+ T +I K
Sbjct: 17 AVLGAVFSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDN-TFIIYAKE 75
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPR 126
G T + G + L + S V S P
Sbjct: 76 EGRTEVTAFGADGRPLTSDTVNV----DSVVTSIADTNKQLKSRFPN 118
>gi|78060314|ref|YP_366889.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383]
gi|77964864|gb|ABB06245.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383]
Length = 652
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ + +G+ + + +T+ I G ++G+TN+IV G
Sbjct: 95 RESTSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQA-TMVSPQTLYILGLSVGTTNMIVQG 153
Query: 90 HNNDILLDTEIATFANEQS 108
+ + ++A A+
Sbjct: 154 RSGACRV-IDVAVGADAGG 171
>gi|154250526|ref|YP_001411350.1| type II and III secretion system protein [Parvibaculum
lavamentivorans DS-1]
gi|154154476|gb|ABS61693.1| type II and III secretion system protein [Parvibaculum
lavamentivorans DS-1]
Length = 461
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 17/102 (16%), Positives = 40/102 (39%), Gaps = 10/102 (9%)
Query: 1 MHRKRQREIKNETVRKKGIPTTASQKT---------PEDNSNRIRIAVGQSLILQFDVLP 51
M R+R ++ R + + P + + I++G IL+
Sbjct: 1 MMRERGGSVRQVFHRLRTVRWPMLAVLLTALLLPQGPVLAAETLSISIGGQRILKLGQTV 60
Query: 52 KQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
++ + + IVDV + + + I G++ G+T++ +
Sbjct: 61 DRIAIANPSIVDVKVI-SSRELRILGQSEGTTDLDIWFAGGA 101
>gi|4768955|gb|AAD29695.1| rough colony protein A [Aggregatibacter actinomycetemcomitans]
Length = 460
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 30/107 (28%), Gaps = 5/107 (4%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
+ + + + G + ++Q + V I D L+ T +I K
Sbjct: 17 AVLGAVFSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDN-TFIIYAKE 75
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPR 126
G T + G + L + S V S P
Sbjct: 76 EGRTEVTAFGADGRPLTSDTVNV----DSVVTSIADTNKQLKSRFPN 118
>gi|8096202|dbj|BAA96101.1| unnamed protein product [Actinobacillus actinomycetemcomitans]
Length = 460
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 30/107 (28%), Gaps = 5/107 (4%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
+ + + + G + ++Q + V I D L+ T +I K
Sbjct: 17 AVLGAVFSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDN-TFIIYAKE 75
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPR 126
G T + G + L + S V S P
Sbjct: 76 EGRTEVTAFGADGRPLTSDTVNV----DSVVTSIADTNKQLKSRFPN 118
>gi|300692331|ref|YP_003753326.1| pilus assembly secretion protein [Ralstonia solanacearum PSI07]
gi|299079391|emb|CBJ52062.1| pilus assembly secretion protein [Ralstonia solanacearum PSI07]
Length = 644
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ + + VG+S ++Q + VG+ +V + L +T+ + G+ +G+TN+IV G
Sbjct: 122 RAHSEVTVPVGKSTMVQLPEPVRNRTVGNPNVVQAM-LVSPQTLYLLGQEVGTTNMIVQG 180
Query: 90 HNNDILLDTEIATFANEQS 108
+ + ++A A+
Sbjct: 181 RSGSCSV-IDVAVGADPGG 198
>gi|323493503|ref|ZP_08098625.1| Flp pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546]
gi|323312326|gb|EGA65468.1| Flp pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546]
Length = 458
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 10/72 (13%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + + Q+ ++ K + + + + D + K +++ G GS I +L +
Sbjct: 27 LEVTINQAKMINLPQDAKSIFISNTHVADYQPMTNTK-IMVFGLQAGSATITILNAQERV 85
Query: 95 LLDTEIATFANE 106
+ + +I +
Sbjct: 86 IYNNKIRVTHDT 97
>gi|107028248|ref|YP_625343.1| type II and III secretion system protein [Burkholderia cenocepacia
AU 1054]
gi|116687159|ref|YP_840406.1| type II and III secretion system protein [Burkholderia cenocepacia
HI2424]
gi|105897412|gb|ABF80370.1| type II and III secretion system protein [Burkholderia cenocepacia
AU 1054]
gi|116652874|gb|ABK13513.1| type II and III secretion system protein [Burkholderia cenocepacia
HI2424]
Length = 642
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ + +G+ + + +T+ I G +G+TN+IV G
Sbjct: 95 RESTSVAVPLGKSLLVPMPEPVRNRTIGNPAVAQA-TMVSPQTLYILGLAVGTTNMIVQG 153
Query: 90 HNNDILLDTEIATFANEQS 108
+ + ++A A+
Sbjct: 154 RSGACRV-IDVAVGADAGG 171
>gi|326388864|ref|ZP_08210446.1| type II and III secretion system protein [Novosphingobium
nitrogenifigens DSM 19370]
gi|326206464|gb|EGD57299.1| type II and III secretion system protein [Novosphingobium
nitrogenifigens DSM 19370]
Length = 565
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 5/99 (5%)
Query: 14 VRKKGIP----TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEK 69
+ + + T + + I++G+ ++ V V ++ I DV ++
Sbjct: 51 AKPRALAVLHTTPPMTPGVTAPARSLAISIGRGELVTLPGNMTDVFVANENIADVQ-VKS 109
Query: 70 EKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQS 108
+ I GK G T + D++ I N S
Sbjct: 110 GNQLYIFGKAGGETTVYASNGRGDVIWSANIRVGNNLDS 148
>gi|170734868|ref|YP_001773982.1| type II and III secretion system protein [Burkholderia cenocepacia
MC0-3]
gi|169820906|gb|ACA95487.1| type II and III secretion system protein [Burkholderia cenocepacia
MC0-3]
Length = 646
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ + +G+ + + +T+ I G +G+TN+IV G
Sbjct: 95 RESTSVAVPLGKSLLVPMPEPVRNRTIGNPAVAQA-TMVSPQTLYILGLAVGTTNMIVQG 153
Query: 90 HNNDILLDTEIATFANEQS 108
+ + ++A A+
Sbjct: 154 RSGACRV-IDVAVGADAGG 171
>gi|309780760|ref|ZP_07675501.1| type II and III secretion system protein:Transport-associated
[Ralstonia sp. 5_7_47FAA]
gi|308920442|gb|EFP66098.1| type II and III secretion system protein:Transport-associated
[Ralstonia sp. 5_7_47FAA]
Length = 603
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
P + + + + VG+S ++Q + VG+ +V + L +T+ + G +GSTN+IV
Sbjct: 91 PMRSHSEVTVPVGKSTMVQLPEPVRSRTVGNPNVVQAM-LVSPQTLYVLGLEVGSTNMIV 149
Query: 88 LGHNND-ILLDTEIATFANEQS 108
G + ++D +A A+
Sbjct: 150 QGRSGSCSVVD--VAVGADPGG 169
>gi|241662165|ref|YP_002980525.1| type II and III secretion system protein [Ralstonia pickettii 12D]
gi|240864192|gb|ACS61853.1| type II and III secretion system protein [Ralstonia pickettii 12D]
Length = 603
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
P + + + + VG+S ++Q + VG+ +V + L +T+ + G +GSTN+IV
Sbjct: 91 PMRSHSEVTVPVGKSTMVQLPEPVRSRTVGNPNVVQAM-LVSPQTLYVLGLEVGSTNMIV 149
Query: 88 LGHNND-ILLDTEIATFANEQS 108
G + ++D +A A+
Sbjct: 150 QGRSGSCSVVD--VAVGADPGG 169
>gi|187926427|ref|YP_001892772.1| type II and III secretion system protein [Ralstonia pickettii 12J]
gi|241665914|ref|YP_002984273.1| type II and III secretion system protein [Ralstonia pickettii 12D]
gi|187728181|gb|ACD29345.1| type II and III secretion system protein [Ralstonia pickettii 12J]
gi|240867941|gb|ACS65601.1| type II and III secretion system protein [Ralstonia pickettii 12D]
Length = 454
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 43/113 (38%), Gaps = 10/113 (8%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT---VVITG 77
+++ + + G ++ +++ +G+ +I D L L+ T V+I
Sbjct: 22 VSSAFAETAPTGQTLHLLTGSQREIRLGKPLERIAIGNPEIADALLLKGRGTATSVLIIA 81
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQSTV----RVYTPGTLSFLSCTPR 126
K G+ N++V + T + + V V G + +S P+
Sbjct: 82 KKPGAANVMVWTQGG---VATTYNVQVDAAAPVPGDPAVVAQGDTAVVSGQPK 131
>gi|187919324|ref|YP_001888355.1| type II and III secretion system protein [Burkholderia phytofirmans
PsJN]
gi|187717762|gb|ACD18985.1| type II and III secretion system protein [Burkholderia phytofirmans
PsJN]
Length = 595
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
P + + I VG+S ++ K VG+ IV + L +T+ + G ++G+TN+IV
Sbjct: 108 PVAEHSSVTIPVGKSTMVDVREPVKSRSVGNPAIVQAM-LVSPQTLYLLGSDVGTTNMIV 166
Query: 88 LGHNND-ILLDTEIATFANEQS 108
G + ++D ++ A+
Sbjct: 167 QGRSGSCTIID--VSVGADPGG 186
>gi|309778769|ref|ZP_07673542.1| roadblock/LC7 domain protein [Ralstonia sp. 5_7_47FAA]
gi|308922477|gb|EFP68101.1| roadblock/LC7 domain protein [Ralstonia sp. 5_7_47FAA]
Length = 454
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 43/113 (38%), Gaps = 10/113 (8%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT---VVITG 77
+++ + + G ++ +++ +G+ +I D L L+ T V+I
Sbjct: 22 VSSAFAETAPTGQTLHLLTGSQREIRLGKPLERIAIGNPEIADALLLKGRGTATSVLIIA 81
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQSTV----RVYTPGTLSFLSCTPR 126
K G+ N++V + T + + V V G + +S P+
Sbjct: 82 KKPGAANVMVWTQGG---VATTYNVQVDAAAPVPGDPAVVAQGDTAVVSGQPK 131
>gi|187927687|ref|YP_001898174.1| type II and III secretion system protein [Ralstonia pickettii 12J]
gi|187724577|gb|ACD25742.1| type II and III secretion system protein [Ralstonia pickettii 12J]
Length = 663
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ + + VG+S ++ + +G+ +V + +++ + G+++G+TN+IV G
Sbjct: 101 RGESSVVVPVGKSSLISLPEPVRNRTLGNPAVVQA-TMVSPQSMYLLGRSVGTTNMIVQG 159
Query: 90 HNNDILLDTEIATFANEQS 108
+ + + A+
Sbjct: 160 RSGACSI-VNVVVNADAGG 177
>gi|197295153|ref|YP_002153694.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
gi|195944632|emb|CAR57236.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
Length = 644
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
S + + +G+SL++ + +G+ + + +T+ I G +G+TN+IV G
Sbjct: 95 RESTSVAVPLGKSLLVPMPEPVRNRTIGNPAVAQA-TMVSPQTLYILGLAVGTTNMIVQG 153
Query: 90 HNNDILLDTEIATFANEQS 108
+ + ++A A+
Sbjct: 154 KSGACRV-IDVAVGADAGG 171
>gi|312882144|ref|ZP_07741893.1| pilus assembly protein CpaC [Vibrio caribbenthicus ATCC BAA-2122]
gi|309370190|gb|EFP97693.1| pilus assembly protein CpaC [Vibrio caribbenthicus ATCC BAA-2122]
Length = 456
Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 37 IAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILL 96
I + +Q ++ +V + + ++ D + E T+V+ +G + +IV G ++ +LL
Sbjct: 35 ITLNDGQHIQVNMPIGKVFISNPEVADYKVI-NENTLVVYANEVGQSRLIVYGTDSSVLL 93
Query: 97 DTEIATFAN 105
I N
Sbjct: 94 SDRIVVDLN 102
>gi|255658704|ref|ZP_05404113.1| putative type II/III secretion system protein [Mitsuokella
multacida DSM 20544]
gi|260849091|gb|EEX69098.1| putative type II/III secretion system protein [Mitsuokella
multacida DSM 20544]
Length = 548
Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ I + QS L +V + + KI DV +L ++ + G + G+T + V N
Sbjct: 31 LSIDLNQSYYLNTGRNITRVAIANPKIADV-SLLDGTSLNVIGISPGTTTLNVWASNGYR 89
Query: 95 LLDTEIATFANEQSTVRV 112
+ I + ++
Sbjct: 90 -YEYRITVSDQDSGLAKI 106
>gi|13475417|ref|NP_106981.1| pilus assembly protein [Mesorhizobium loti MAFF303099]
gi|14026169|dbj|BAB52767.1| pilus assembly protein [Mesorhizobium loti MAFF303099]
Length = 481
Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
R+ + + QS+ + + ++VGD+KI D + +T+ + GK G+T + +
Sbjct: 42 RVFLPMSQSVTIAVNATLGDIVVGDEKIADAQPMTD-RTLYVIGKGAGTTTVNLFSPEKR 100
Query: 94 ILLDTEIATFANEQSTVRVYTPG 116
L +I + +
Sbjct: 101 SLGVIQIEVGVDVSDMAQAIRQV 123
>gi|238027562|ref|YP_002911793.1| type II and III secretion system protein [Burkholderia glumae
BGR1]
gi|237876756|gb|ACR29089.1| Type II and III secretion system protein [Burkholderia glumae
BGR1]
Length = 476
Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE-KEKTVVITGKNL 80
++ + +AVG + ++V +GD + DVL ++ V++ GK+
Sbjct: 17 ASAVANAAGLDAGVDLAVGAQRQIATGRSLQRVAIGDPAVADVLVVKGNGGGVLLIGKSA 76
Query: 81 GSTNIIVLGHN 91
G+TN+++
Sbjct: 77 GTTNVMLWERG 87
>gi|293391332|ref|ZP_06635666.1| type II/IV secretion system secretin RcpA/CpaC [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|32452623|gb|AAP43985.1| RcpA [Aggregatibacter actinomycetemcomitans]
gi|290951866|gb|EFE01985.1| type II/IV secretion system secretin RcpA/CpaC [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 460
Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 29/107 (27%), Gaps = 5/107 (4%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
+ + + + G + ++Q + V I D L+ + I K
Sbjct: 17 AVLGAMSSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNSFI-IYAKE 75
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPR 126
G T + G + L + S V S P
Sbjct: 76 EGRTEVTAFGVDGRPLTSDTVNV----DSVVTSIADTNKQLKSHFPN 118
>gi|255624862|ref|XP_002540535.1| conserved hypothetical protein [Ricinus communis]
gi|223495099|gb|EEF21848.1| conserved hypothetical protein [Ricinus communis]
Length = 150
Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 16 KKGIPTTASQKTPE-----DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKE 70
G ++ P ++ + VG+S +++ + VG+ +V L + +
Sbjct: 41 PTGAAPLRAEAGPNCKGEAAKPAQLALQVGKSSLMRLPEPVQHRSVGNPLVVQALMVAPD 100
Query: 71 KTVVITGKNLGSTNIIVLGHNN-DILLDTEIATFANE 106
T+ I G ++G+TN+I+ G + +LD +A +
Sbjct: 101 -TLYIAGVDVGTTNMIIQGKSGLCSVLDITVAMDPSA 136
>gi|85705572|ref|ZP_01036670.1| type II and III secretion system protein [Roseovarius sp. 217]
gi|85669997|gb|EAQ24860.1| type II and III secretion system protein [Roseovarius sp. 217]
Length = 441
Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
+ +P R+ + G+S++L V V D + D ++ V + GK +G
Sbjct: 23 PSVLSSPASAQERLTVEQGKSILLPVGDNVDTVFVSDTTVADA-SISSNNRVFVFGKEVG 81
Query: 82 STNIIVLGHNNDILLDTEIATF 103
T++I D + +
Sbjct: 82 ETSLIATSTYADSDMTFTVVVT 103
>gi|134291857|ref|YP_001115626.1| type II and III secretion system protein [Burkholderia
vietnamiensis G4]
gi|134135046|gb|ABO59371.1| type II and III secretion system protein [Burkholderia
vietnamiensis G4]
Length = 647
Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+S + + +G+SL++ + +G+ + + +T+ I G ++G+TN+IV G
Sbjct: 95 RDSTSVSVPLGKSLLVPMPEAVRNRTIGNPAVAQA-TMVSPQTLYILGLSVGTTNMIVQG 153
Query: 90 HNNDILLDTEIATFANEQS 108
+ + ++A A+
Sbjct: 154 KSGACRV-IDVAVGADAGG 171
>gi|323529413|ref|YP_004231565.1| type II and III secretion system protein [Burkholderia sp.
CCGE1001]
gi|323386415|gb|ADX58505.1| type II and III secretion system protein [Burkholderia sp.
CCGE1001]
Length = 616
Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 12 ETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK 71
T++ A +T + S + + VG+S ++Q + +G+ + + +
Sbjct: 69 NTMQSAAARGPACTRTQSEQSTVV-VPVGKSTLMQTAEPVRNRTLGNPLVAQA-TMVSPQ 126
Query: 72 TVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQS 108
T+ + G +G+TN+IV G + + + A+
Sbjct: 127 TLYVVGMAVGTTNMIVQGKSGACEV-INVVVNADSGG 162
>gi|170692564|ref|ZP_02883726.1| type II and III secretion system protein [Burkholderia graminis
C4D1M]
gi|170142220|gb|EDT10386.1| type II and III secretion system protein [Burkholderia graminis
C4D1M]
Length = 614
Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + + + VG+S ++Q + +G+ I + KT+ + G +G+TN+IV
Sbjct: 84 TQSEQSTVVVPVGKSTLMQTAEPVRNRTLGNPLIAQA-TMVSPKTLYVVGMAVGTTNMIV 142
Query: 88 LGHNNDILLDTEIATFANEQS 108
G + + + A+
Sbjct: 143 QGKSGACEV-INVVVNADAGG 162
>gi|17549308|ref|NP_522648.1| outer membrane channel signal peptide protein [Ralstonia
solanacearum GMI1000]
gi|17431560|emb|CAD18238.1| probable pilus assembly, secretin cpac signal peptide protein
[Ralstonia solanacearum GMI1000]
Length = 454
Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE---KEKTVVITGKNLGSTNIIV 87
+ + G ++ +++ +G+ ++ D L L+ +++I K G+ NI+V
Sbjct: 32 ADQALHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGHGAAGSLLIIAKKPGAANIMV 91
Query: 88 LGHNNDIL 95
L
Sbjct: 92 WTQGGTAL 99
>gi|162147491|ref|YP_001601952.1| type II and III secretion system protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209545598|ref|YP_002277827.1| type II and III secretion system protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786068|emb|CAP55650.1| type II and III secretion system protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209533275|gb|ACI53212.1| type II and III secretion system protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 473
Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 1/104 (0%)
Query: 17 KGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
+ AS + I G +++ D + + V D K+V+V A ++ +
Sbjct: 26 RSTHPAASGSVAHGAHAVLGIEEGAGKLVKLDGIATNIFVADPKVVEVRA-ASPDSMFVF 84
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF 120
G G T +I + ++ + + +
Sbjct: 85 GVGAGQTTVIATSRSGGVVARYTVVVLPSSYRASALRRDVGQQN 128
>gi|167836794|ref|ZP_02463677.1| type II/III secretion system protein [Burkholderia thailandensis
MSMB43]
Length = 423
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 9/106 (8%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK-TVVITGKNLGSTN 84
I + G + ++V +GD + DVL ++ + V++ K GST+
Sbjct: 1 AAQAAEMGAIELTTGAQRQIAVGRGVQRVAIGDPNVADVLVIKGGRGGVLLVAKAAGSTS 60
Query: 85 IIVLGHNNDILLDTEIATFANEQST--------VRVYTPGTLSFLS 122
++V D + + VR Y + S
Sbjct: 61 LMVWERGRDEPAVYTVDVVSGAARALLDGGAPGVRAYDGTAVVSGS 106
>gi|319941902|ref|ZP_08016223.1| hypothetical protein HMPREF9464_01442 [Sutterella wadsworthensis
3_1_45B]
gi|319804555|gb|EFW01425.1| hypothetical protein HMPREF9464_01442 [Sutterella wadsworthensis
3_1_45B]
Length = 485
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ +++ Q L F+ V V I + + VV+ G G T+++VLG +
Sbjct: 1 MSVSLYQGKALSFNEQIGAVFVAQPSIASYQVV-GNRKVVVFGSYPGKTSLMVLGTDGRT 59
Query: 95 LLDTEIATFANEQS 108
L + + + S
Sbjct: 60 LYNGLVEVAYDVSS 73
>gi|253996769|ref|YP_003048833.1| type II and III secretion system protein [Methylotenera mobilis
JLW8]
gi|253983448|gb|ACT48306.1| type II and III secretion system protein [Methylotenera mobilis
JLW8]
Length = 513
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 23 ASQKTPEDNS--NRIRIAVGQSLILQFDVLPK--QVIVGDDKIVDVLALEKEKTVVITGK 78
A++ TP + +++GQS +++ +V V DDKIV V + + VV+ K
Sbjct: 61 AARPTPSSTEIVPSVELSLGQSHLVRLPAGVNLQRVKVDDDKIVQVD-VTSPREVVLHAK 119
Query: 79 NLGSTNIIVLGHNN-DILLDTEIATFANEQSTVRVYTPGTL 118
+GST +I+L + ++D + A + T
Sbjct: 120 TIGSTMVIILDKSGQSAVMDVRVVAAATAMDAASLQTKLQQ 160
>gi|330830432|ref|YP_004393384.1| protein transporter, outer membrane secretin (secretin) family
[Aeromonas veronii B565]
gi|328805568|gb|AEB50767.1| Protein transporter, outer bacterial membrane secretin (Secretin)
family [Aeromonas veronii B565]
Length = 465
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 15/87 (17%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + + QS +L FD V + ++V V + ++ + I G+ +G T+++V
Sbjct: 16 AAAAESLTLTPEQSTLLNFDEPVLDAFVANSELVRVHSPSDQQLL-IYGRKVGHTDLVVT 74
Query: 89 GHNNDILLDTEIATFANEQSTVRVYTP 115
+ L + A+ ++
Sbjct: 75 ALDGRTLGHYRVTVVADLAPLEQLARQ 101
>gi|156977409|ref|YP_001448315.1| Flp pilus assembly protein, secretin CapC [Vibrio harveyi ATCC
BAA-1116]
gi|156529003|gb|ABU74088.1| hypothetical protein VIBHAR_06196 [Vibrio harveyi ATCC BAA-1116]
Length = 456
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
I + GQ + L+ +V + + + D + T+V+ +G +IV
Sbjct: 28 THAADRSITLHDGQHISLK--QPIGKVFISNPDVADYKVINDT-TLVVFANGIGQARLIV 84
Query: 88 LGHNNDILLDTEIATFANEQSTVR 111
G + D+LL I + R
Sbjct: 85 YGIDEDVLLSDRIIVDLDLTDVRR 108
>gi|307245412|ref|ZP_07527500.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307254367|ref|ZP_07536205.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307258825|ref|ZP_07540557.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307261005|ref|ZP_07542687.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306853753|gb|EFM85970.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306862666|gb|EFM94622.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306867176|gb|EFM99032.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306869307|gb|EFN01102.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 462
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + GQS +++ + + V ++ D L+ + ++ K G + +I
Sbjct: 24 SAMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDN-SFMLYAKAEGRSEVIAF 82
Query: 89 GHNNDILLD 97
N L +
Sbjct: 83 DANGTPLTE 91
>gi|190149865|ref|YP_001968390.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|307249759|ref|ZP_07531737.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|307256574|ref|ZP_07538355.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307263189|ref|ZP_07544810.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|189914996|gb|ACE61248.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|306858174|gb|EFM90252.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306864984|gb|EFM96886.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306871551|gb|EFN03274.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 462
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + GQS +++ + + V ++ D L+ + ++ K G + +I
Sbjct: 24 SAMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDN-SFMLYAKAEGRSEVIAF 82
Query: 89 GHNNDILLD 97
N L +
Sbjct: 83 DANGTPLTE 91
>gi|165975974|ref|YP_001651567.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|165876075|gb|ABY69123.1| Flp pilus assembly protein, secretin [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
Length = 462
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + GQS +++ + + V ++ D L+ + ++ K G + +I
Sbjct: 24 SAMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDN-SFMLYAKAEGRSEVIAF 82
Query: 89 GHNNDILLD 97
N L +
Sbjct: 83 DANGTPLTE 91
>gi|46143341|ref|ZP_00204447.1| COG4964: Flp pilus assembly protein, secretin CpaC
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|126208037|ref|YP_001053262.1| rough colony protein A [Actinobacillus pleuropneumoniae L20]
gi|126096829|gb|ABN73657.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar
5b str. L20]
Length = 462
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ + GQS +++ + + V ++ D L+ + ++ K G + +I
Sbjct: 24 SAMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDN-SFMLYAKAEGRSEVIAF 82
Query: 89 GHNNDILLD 97
N L +
Sbjct: 83 DANGTPLTE 91
>gi|153833257|ref|ZP_01985924.1| general secretion pathway protein D [Vibrio harveyi HY01]
gi|148870528|gb|EDL69443.1| general secretion pathway protein D [Vibrio harveyi HY01]
Length = 456
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 37 IAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILL 96
I + + +V + + + D + T+V+ +G + +IV G + D+LL
Sbjct: 35 ITLNDGQHISVKQPIGKVFISNPDVADYKVINDT-TLVVFANGIGQSRLIVYGIDEDVLL 93
Query: 97 DTEIATFAN 105
I +
Sbjct: 94 SDRIIVDLD 102
>gi|307726375|ref|YP_003909588.1| type II and III secretion system protein [Burkholderia sp.
CCGE1003]
gi|307586900|gb|ADN60297.1| type II and III secretion system protein [Burkholderia sp.
CCGE1003]
Length = 616
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 20/141 (14%)
Query: 2 HRKRQREIKNETVRKKGIPTTASQKT-------PEDNSNRIRIAVGQSLILQFDVLPKQV 54
H Q I + S + + + + VG+S ++ +
Sbjct: 51 HGPVQMTISMNAAPPQPASAMQSAAARGPACTRTQSDQRTVVVPVGKSTLMPTAEPVRNR 110
Query: 55 IVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYT 114
+G+ + + +T+ + G +G+TN+IV G + I N S
Sbjct: 111 TLGNPLVAQA-TMVSPQTLYVVGMAVGTTNMIVQGKSGAC---EVINVVVNADS------ 160
Query: 115 PGTLSFLSCTPRCLPSSPPVR 135
G + LS + +P P +R
Sbjct: 161 GGLQTSLS---QLMPDEPNIR 178
>gi|167587316|ref|ZP_02379704.1| type II and III secretion system protein [Burkholderia ubonensis
Bu]
Length = 477
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL--EKEKTVVITGKNLGSTNIIVLGHNN 92
I +AVG + ++V VGD + DVL + + V++ K GSTN+++
Sbjct: 30 IDLAVGSQRQIAAGRALQRVAVGDPSVADVLIMKGSRAGAVLLVAKAPGSTNVMLWERGR 89
Query: 93 DILLDTEIATFANEQSTV 110
D + + V
Sbjct: 90 DEPMVWNVNVVDAAAHAV 107
>gi|85859139|ref|YP_461341.1| flp pilus assembly protein, secretin [Syntrophus aciditrophicus SB]
gi|85722230|gb|ABC77173.1| flp pilus assembly protein, secretin [Syntrophus aciditrophicus SB]
Length = 503
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 15 RKKGIPTTASQKTP----EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKE 70
+P A+ ++ + VG+S I++ K+V + D+L L
Sbjct: 23 FLIALPCVAAGPDRVVVNTSRPQKLTLTVGKSTIVECPQNLKRVSIAAPDYADILTL-SP 81
Query: 71 KTVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
+ + +TGK G+TN+ + +N ++ ++ +
Sbjct: 82 RQIYLTGKMAGNTNLTLWRSDNSVMSVIDVEVLPD 116
>gi|110632971|ref|YP_673179.1| type II and III secretion system protein [Mesorhizobium sp. BNC1]
gi|110283955|gb|ABG62014.1| type II and III secretion system protein [Chelativorans sp. BNC1]
Length = 464
Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ IR+A G+ L ++ ++++GD +I + L V+ G+ LG+T I +
Sbjct: 46 AKDSAIRVARGKPLTVEIAEAFDEIVIGDPEIATINPLTDHSFYVL-GQGLGTTGIALYD 104
Query: 90 HNNDILLDTEIATFANE---QSTVR 111
+ ++ ++ + T+R
Sbjct: 105 ESKRLIGTFDVEVTLDTKMLAGTIR 129
>gi|83747917|ref|ZP_00944949.1| GspD-related protein; CpaC2 [Ralstonia solanacearum UW551]
gi|207739458|ref|YP_002257851.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
IPO1609]
gi|83725450|gb|EAP72596.1| GspD-related protein; CpaC2 [Ralstonia solanacearum UW551]
gi|206592834|emb|CAQ59740.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
IPO1609]
Length = 462
Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 14/93 (15%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE---KEKTVVIT 76
P +Q P+ + + G ++ +++ +G+ ++ D L L+ +++I
Sbjct: 23 PGVHAQSMPDGP--VLHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGRGAAGSLLIV 80
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
K G+ +I+V + + A +
Sbjct: 81 AKKPGAASIMVWTQGGTAIT-YNVQVEAEARGA 112
>gi|117618977|ref|YP_855991.1| protein transporter, outer bacterial membrane secretin (secretin)
family protein [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|117560384|gb|ABK37332.1| protein transporter, outer bacterial membrane secretin (secretin)
family [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 465
Score = 43.1 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
+ + + QS +L FD V + ++V V + ++ + I G+ +G T+++V
Sbjct: 18 AAESLTLTPEQSTLLNFDEPVLDAFVANSELVRVHSPSDQQLL-IYGRKVGRTDLVVTAL 76
Query: 91 NNDILLDTEIATFANEQSTVRVYTP 115
+ L + A+ ++
Sbjct: 77 DGRTLGHYRVQVVADLAPLKQLARQ 101
>gi|149186255|ref|ZP_01864569.1| type II secretion system protein [Erythrobacter sp. SD-21]
gi|148830286|gb|EDL48723.1| type II secretion system protein [Erythrobacter sp. SD-21]
Length = 522
Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 14/83 (16%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
++ S I +++G+ ++ V + ++ + DV ++ + + + GK+ G T +
Sbjct: 30 QSVTSPSQEIVLSIGRGELVNVPGNMADVFISNENVADVQ-VKSRRQLYLFGKSGGETTV 88
Query: 86 IVLGHNNDILLDTEIATFANEQS 108
DI+ + +N S
Sbjct: 89 YASNAAGDIIWAANVRVGSNIGS 111
>gi|260463894|ref|ZP_05812090.1| type II and III secretion system protein [Mesorhizobium
opportunistum WSM2075]
gi|259030269|gb|EEW31549.1| type II and III secretion system protein [Mesorhizobium
opportunistum WSM2075]
Length = 481
Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ I++A G+ + Q+++GD +I +V L K+ + G NLG+T I +
Sbjct: 48 ATKNASIKVAKGKPKTIITSAAFYQIVIGDPEIANVNPLTD-KSFYVLGNNLGTTGIALF 106
Query: 89 GHNNDIL--LDTEIATFANE-QSTVR 111
++ +D E+ +E +T+R
Sbjct: 107 DDKKQLVGTVDIEVTLDTDELANTIR 132
>gi|293606490|ref|ZP_06688848.1| roadblock/LC7 domain protein [Achromobacter piechaudii ATCC 43553]
gi|292815113|gb|EFF74236.1| roadblock/LC7 domain protein [Achromobacter piechaudii ATCC 43553]
Length = 458
Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL----EKEKTVVIT 76
TTA + + QSL+L P ++ +GD ++ DV L ++ ++++
Sbjct: 29 TTAPGANAAARDIAVAVKGQQSLMLD-GAAPSRIAIGDPEVADVKILPASGKRAGSLLLY 87
Query: 77 GKNLGSTNIIVLGHNN 92
GK G+T + + NN
Sbjct: 88 GKKAGTTQLQIWTGNN 103
>gi|261867455|ref|YP_003255377.1| RcpA [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261412787|gb|ACX82158.1| RcpA [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 420
Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 44 ILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIAT 102
++Q + V I D L+ T +I K G T + G + L +
Sbjct: 1 MVQTKEKIDTIFVSSPNIADYEILDDN-TFIIYAKEEGRTEVTAFGADGRPLTSDTVNV 58
>gi|186474103|ref|YP_001861445.1| type II and III secretion system protein [Burkholderia phymatum
STM815]
gi|184196435|gb|ACC74399.1| type II and III secretion system protein [Burkholderia phymatum
STM815]
Length = 700
Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLG 89
+ + I +G+S ++ K VG+ IV + L +T+ + G ++G+TN+IV G
Sbjct: 113 ADHQTVTIPIGKSTMVNVRESVKTRTVGNPSIVQAM-LVSPQTLYLLGTDVGTTNMIVQG 171
Query: 90 HNNDIL------------LDTEIATFANEQSTVRVYTPGTLSFLSCT 124
+ L +A E+S V+V L+ T
Sbjct: 172 RSGSCTVIDVAVGADPGGLQQTLAVLMPEESGVQVKAAADTLVLTGT 218
>gi|319940440|ref|ZP_08014785.1| type II and III secretion system protein [Sutterella wadsworthensis
3_1_45B]
gi|319806066|gb|EFW02815.1| type II and III secretion system protein [Sutterella wadsworthensis
3_1_45B]
Length = 530
Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+R+ + + +LQ +V+V I + V G GST L +
Sbjct: 76 LRVFLKEGALLQLPSAAAKVLVATPGIA-SYQMPSPDQVFFFGTAAGSTTFYALDEAGAV 134
Query: 95 LLDTEIATFAN 105
+ ++ N
Sbjct: 135 IAAVQVTVEHN 145
>gi|253701800|ref|YP_003022989.1| type II and III secretion system protein [Geobacter sp. M21]
gi|251776650|gb|ACT19231.1| type II and III secretion system protein [Geobacter sp. M21]
Length = 451
Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
+ T + V + ++L + V + D ++DV + ++I GK +GSTN
Sbjct: 22 EATNATAGVPTTVIVNRGVVLNLKNPARYVNITDKDVIDVPDPLRRNQLLINGKKIGSTN 81
Query: 85 IIVLGHNND--ILLDTEIA 101
+IV NN+ D +
Sbjct: 82 LIVWEENNENPTFFDVRVV 100
>gi|317403496|gb|EFV84000.1| hypothetical protein HMPREF0005_03138 [Achromobacter xylosoxidans
C54]
Length = 458
Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK----TV 73
+ TA + I +AV L D P ++ +GD + DV L +V
Sbjct: 25 SLAQTAPAAGASAPARDIAVAVKGQQALMLDGAPVRIAIGDPDVADVKVLAASGKRQASV 84
Query: 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
++ GK G+T + + N + N
Sbjct: 85 LLYGKKAGTTQLQIWTGANAAPQVWTVRVAGN 116
>gi|300697742|ref|YP_003748403.1| pilus assembly protein (cpaC) [Ralstonia solanacearum CFBP2957]
gi|299074466|emb|CBJ54016.1| putative pilus assembly protein (cpaC) [Ralstonia solanacearum
CFBP2957]
Length = 462
Score = 42.8 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE---KEKTVVIT 76
P +Q PE + + G ++ +++ +G+ ++ D L L+ +++I
Sbjct: 31 PGVHAQSMPEGP--VVHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGRGAAGSLLIV 88
Query: 77 GKNLGSTNIIVLGHNNDIL 95
K G+ +I+V +
Sbjct: 89 AKKPGAASIMVWTQGGTAI 107
>gi|77456876|ref|YP_346381.1| type II and III secretion system protein [Pseudomonas fluorescens
Pf0-1]
gi|77380879|gb|ABA72392.1| putative Flp pilus assembly protein, secretin [Pseudomonas
fluorescens Pf0-1]
Length = 422
Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+ + G +Q V +V VGD KI DV + + +TG G+T +++
Sbjct: 41 VLEVGEGLQQAVQSPVAITRVAVGDPKIADVRVTGDQGVL-LTGVGPGATTLMIWTACAS 99
Query: 94 ILLDTEIATFA 104
+ +
Sbjct: 100 TPRQSMVFVQG 110
>gi|78357403|ref|YP_388852.1| type II/III secretion system protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78219808|gb|ABB39157.1| type II/III secretion system protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 482
Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 16 KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
+ +A +++A G+S++L+ ++V V ++ VL L + V +
Sbjct: 20 LAAVLLSAVCAQAAIVPAAVQLAAGKSVVLETASPVRRVSVAAPEVAQVLVLSPTQ-VYV 78
Query: 76 TGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
TG G T + + + +I +
Sbjct: 79 TGVKPGGTTLTLWNAAGAVSHVFDIQVSPD 108
>gi|207724789|ref|YP_002255186.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
MolK2]
gi|206590014|emb|CAQ36975.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
MolK2]
Length = 447
Score = 42.4 bits (98), Expect = 0.024, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE---KEKTVVIT 76
P +Q P+ + + G ++ +++ +G+ ++ D L L+ +++I
Sbjct: 8 PGVHAQNMPDGP--VLHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGRGAAGSLLIV 65
Query: 77 GKNLGSTNIIVLGHNNDIL 95
K G+ +I+V +
Sbjct: 66 AKKPGAASIMVWTQGGTAI 84
>gi|197117446|ref|YP_002137873.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem]
gi|197086806|gb|ACH38077.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem]
Length = 451
Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
+ + V + ++L + V + D ++DV + ++I GK +GSTN
Sbjct: 22 EAATATAGVPTTVIVNRGVVLNLKNPARYVNITDKDVIDVPDPLRRNQLLINGKKIGSTN 81
Query: 85 IIVLGHNND--ILLDTEIA 101
+IV NND D +
Sbjct: 82 LIVWEENNDKPTFFDVRVV 100
>gi|115351456|ref|YP_773295.1| type II and III secretion system protein [Burkholderia ambifaria
AMMD]
gi|115281444|gb|ABI86961.1| type II and III secretion system protein [Burkholderia ambifaria
AMMD]
Length = 444
Score = 42.0 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEK--EKTVVITGKNLGSTNI 85
+ I +AVG + +++ VGD +VDVL ++ +V++ K GSTN+
Sbjct: 23 AAGTNASIDLAVGSQRQVAAGRTLQRIAVGDPAVVDVLVMKGSHAGSVLLVAKAPGSTNV 82
Query: 86 IVLGHN 91
++
Sbjct: 83 LLWERG 88
>gi|13471032|ref|NP_102601.1| secretory protein [Mesorhizobium loti MAFF303099]
gi|14021776|dbj|BAB48387.1| probable secretory protein [Mesorhizobium loti MAFF303099]
Length = 461
Score = 42.0 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ I++A G+ + + Q+++GD +I +V L K+ + G NLG+T I +
Sbjct: 28 ATKNASIKVAKGKPKTIVTNAAFYQIVIGDPEIANVNPLTD-KSFYVLGNNLGTTGIALF 86
Query: 89 GHNNDILLDTEIATFANEQSTVRVYT 114
++ +I +
Sbjct: 87 DEKKQLVGTVDIEVTLDTDQLASTIR 112
>gi|229588195|ref|YP_002870314.1| putative type II secretion system protein [Pseudomonas fluorescens
SBW25]
gi|229360061|emb|CAY46915.1| putative type II secretion system protein [Pseudomonas fluorescens
SBW25]
Length = 405
Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 11/122 (9%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPK--QVIVGDDKIVDVLALEKE 70
+ G+ A + VG+ L + ++ +GD KI DV + +
Sbjct: 19 SSLPVGMALAAPGNCSALGQLPAVVEVGEGLQQELQSPVAITRLAIGDPKIADVR-VNGD 77
Query: 71 KTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLPS 130
+ ++TG G+T+++V + + S + LS +P P
Sbjct: 78 RHFLLTGVASGATSLMVWTACASTPRQSMVFVKGRATSALT--------SLSLSPSEDPL 129
Query: 131 SP 132
P
Sbjct: 130 LP 131
>gi|302391029|ref|YP_003826849.1| type II and III secretion system protein [Acetohalobium
arabaticum DSM 5501]
gi|302203106|gb|ADL11784.1| type II and III secretion system protein [Acetohalobium
arabaticum DSM 5501]
Length = 414
Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 21 TTASQKTPEDNSNRIRIAVGQS---LILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
++ + +++ G+S ++ + V D ++ D++ + +E+ + I G
Sbjct: 20 ISSGLLAHKSQQKILQLGTGKSELLKVVDLERAA----VADPEVADIVTISQEELL-ING 74
Query: 78 KNLGSTNIIVLGHNN 92
K+ G+T + +
Sbjct: 75 KSEGTTTLHLWDQKG 89
>gi|170701752|ref|ZP_02892688.1| type II and III secretion system protein [Burkholderia ambifaria
IOP40-10]
gi|170133335|gb|EDT01727.1| type II and III secretion system protein [Burkholderia ambifaria
IOP40-10]
Length = 444
Score = 41.6 bits (96), Expect = 0.039, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEK--EKTVVITGKNLGSTNI 85
+ I +AVG + +++ VGD +VDVL ++ +V++ K GSTN+
Sbjct: 23 AAGTNASIDLAVGSQRQIAAGRTLQRIAVGDPAVVDVLVMKGSHAGSVLLVAKAPGSTNV 82
Query: 86 IVLGHN 91
++
Sbjct: 83 LLWERG 88
>gi|322434104|ref|YP_004216316.1| type II and III secretion system protein [Acidobacterium sp.
MP5ACTX9]
gi|321161831|gb|ADW67536.1| type II and III secretion system protein [Acidobacterium sp.
MP5ACTX9]
Length = 484
Score = 41.2 bits (95), Expect = 0.042, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + VG S++L K++ VG+ ++ +V+T K G ++++V
Sbjct: 59 DETLHLLVGHSMVLHSTSNIKRIFVGNPTVLQSYT-GGPSEIVLTAKATGVSSLVVWDTQ 117
Query: 92 ND 93
Sbjct: 118 GQ 119
>gi|104779900|ref|YP_606398.1| type II/IV secretion system protein D [Pseudomonas entomophila
L48]
gi|95108887|emb|CAK13583.1| Putative type II/IV secretion system protein D [Pseudomonas
entomophila L48]
Length = 426
Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 16 KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
+ + T + I + G L+ V +V VG+ K+ DV A E+ V++
Sbjct: 22 PQALATGKGCAAFDQMPTVIEMDQGLQQELRLPVAITRVAVGEPKVADVQA-SGERAVLL 80
Query: 76 TGKNLGSTNIIV 87
TG G+T++++
Sbjct: 81 TGVGQGNTSLML 92
>gi|39937141|ref|NP_949417.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris CGA009]
gi|39650999|emb|CAE29522.1| possible pilus assembly protein cpaB [Rhodopseudomonas palustris
CGA009]
Length = 270
Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 14/93 (15%)
Query: 43 LILQFDVLPKQ-----VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLD 97
+L D LPK+ V+VG K + + V+ + G+ ++ + + D
Sbjct: 183 RVLAIDQLPKEREGQNVVVG--KTATLELTGDQAEVLTRARQSGTLSLAL-----RSIAD 235
Query: 98 TEIATFANEQS--TVRVYTPGTLSFLSCTPRCL 128
I A++Q + VY SC P C
Sbjct: 236 ARIVAEASDQGDKQITVYRGTDKELYSCAPLCE 268
>gi|330811024|ref|YP_004355486.1| type II secretion system protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327379132|gb|AEA70482.1| putative type II secretion system protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 407
Score = 41.2 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+ G L+ ++ VGD KI DV ++TG G+T+++V +
Sbjct: 42 TFEVGQGLQSELRILAPVTKLAVGDPKIADVQP-SGNDAFILTGLAPGATSLMVWTDCSK 100
Query: 94 ILLDTEIATFANEQSTVR 111
I + + +
Sbjct: 101 IPRQSMVFVKGRATEALT 118
>gi|260914312|ref|ZP_05920781.1| type II/IV secretion system secretin RcpA/CpaC [Pasteurella
dagmatis ATCC 43325]
gi|260631413|gb|EEX49595.1| type II/IV secretion system secretin RcpA/CpaC [Pasteurella
dagmatis ATCC 43325]
Length = 465
Score = 41.2 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
+ + G + ++Q + V I D L+ + I K G I N
Sbjct: 30 AKTFNLEQGGTQLIQTKEKIDTIFVSSPAIADYEILDDNSFI-IYAKEQGRAEISAFDAN 88
Query: 92 NDILLDTEIAT 102
L + +
Sbjct: 89 GKTLTNDVVNV 99
>gi|149188846|ref|ZP_01867136.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1]
gi|148837266|gb|EDL54213.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1]
Length = 453
Score = 41.2 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+ S I V + ++ +V V D IVD + E ++VI K +G ++
Sbjct: 22 SSMAYSGETYITVNDAKNIELSERITKVFVSDPDIVDYNVI-NENSIVIFSKAVGQARLM 80
Query: 87 VLGHNNDILLDTEIATFAN 105
+ G + +L I +
Sbjct: 81 IYGESEKLLYSERIIADID 99
>gi|319783874|ref|YP_004143350.1| type II and III secretion system protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317169762|gb|ADV13300.1| type II and III secretion system protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 482
Score = 41.2 bits (95), Expect = 0.052, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
+ I++A G+ + Q+++GD +I +V L K+ + G NLG+T I +
Sbjct: 49 STKNASIKVAKGKPKTIITSAAFYQIVIGDPEIANVNPLTD-KSFYVLGNNLGTTGIALF 107
Query: 89 GHNNDILLDTEIATFANEQSTVRVYT 114
++ +I +
Sbjct: 108 DEKKQLVGTVDIEVTLDTDQLASTIR 133
>gi|110632479|ref|YP_672687.1| Flp pilus assembly protein secretin CpaC-like [Mesorhizobium sp.
BNC1]
gi|110283463|gb|ABG61522.1| Flp pilus assembly protein secretin CpaC-like protein
[Chelativorans sp. BNC1]
Length = 473
Score = 40.8 bits (94), Expect = 0.059, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
+Q +P R+ I +G+ L L + + V D I D+ + I GK+ G T
Sbjct: 75 AQASPA-YGQRLIIEIGKGLQLSGTENAESLFVADPTIADIKE-SPGEAHFIYGKSAGET 132
Query: 84 NIIVLGHNNDILLDTEIAT 102
+ + L ++
Sbjct: 133 TVTGVDLGGRTLFQYDMVV 151
>gi|192292976|ref|YP_001993581.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1]
gi|192286725|gb|ACF03106.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1]
Length = 270
Score = 40.8 bits (94), Expect = 0.062, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 14/93 (15%)
Query: 43 LILQFDVLPKQ-----VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLD 97
+L D LPK+ V+VG K + + V+ + G+ ++ + + D
Sbjct: 183 RVLAIDQLPKEREGQNVVVG--KTATLELTGDQAEVLTRARQSGTLSLAL-----RSIAD 235
Query: 98 TEIATFANEQS--TVRVYTPGTLSFLSCTPRCL 128
+ A++Q + VY SC P C
Sbjct: 236 ARVVAEASDQGDKQITVYRGTDKELYSCAPLCE 268
>gi|294102189|ref|YP_003554047.1| type II and III secretion system protein [Aminobacterium
colombiense DSM 12261]
gi|293617169|gb|ADE57323.1| type II and III secretion system protein [Aminobacterium
colombiense DSM 12261]
Length = 384
Score = 40.8 bits (94), Expect = 0.064, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 37 IAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILL 96
+ VG S +L++ K++ VG+ ++D + L+ + + +TGK G +IV +
Sbjct: 33 LDVGDSAVLKYQN-VKRMSVGNPDVLDAIPLDNNQVL-LTGKVEGGAALIVWDAAGMHM- 89
Query: 97 DTEIATFAN 105
+I +
Sbjct: 90 -EKILVHPS 97
>gi|320101627|ref|YP_004177218.1| type II and III secretion system protein [Isosphaera pallida ATCC
43644]
gi|319748909|gb|ADV60669.1| type II and III secretion system protein [Isosphaera pallida ATCC
43644]
Length = 712
Score = 40.4 bits (93), Expect = 0.077, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIV-------DVLALE------KEKTVVI 75
+D S + + VG+ ++Q P + I+G+ +I DV +L + V+
Sbjct: 168 QDPSVELSVVVGRGKVIQLREQPLRFILGNPRIATLSFPPSDVQSLAQLDRPSDARLFVV 227
Query: 76 TGKNLGSTNIIVLGHNNDI 94
G G+T + + NN
Sbjct: 228 YGIQAGTTTLTIWDKNNVP 246
>gi|317154605|ref|YP_004122653.1| type II and III secretion system protein [Desulfovibrio
aespoeensis Aspo-2]
gi|316944856|gb|ADU63907.1| type II and III secretion system protein [Desulfovibrio
aespoeensis Aspo-2]
Length = 478
Score = 40.4 bits (93), Expect = 0.082, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ I + V +S IL D +V + + V+ L + + ITG+ LG+T + +
Sbjct: 38 EAPGVISLVVSKSTILTADAPVSRVSLAQPETASVVVLSPTQ-IYITGRKLGTTTLTL 94
>gi|218887827|ref|YP_002437148.1| type II and III secretion system protein [Desulfovibrio vulgaris
str. 'Miyazaki F']
gi|218758781|gb|ACL09680.1| type II and III secretion system protein [Desulfovibrio vulgaris
str. 'Miyazaki F']
Length = 493
Score = 40.1 bits (92), Expect = 0.096, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ +AVG+S++++ +V + D+ I V+ L ++ V +TGK G + + I
Sbjct: 47 VPLAVGKSMVVRTAQPAARVSMSDEAIAGVVVLSPQQ-VYVTGKKAGGATLTLWNGAGAI 105
Query: 95 LLDTEIATFAN 105
+I +
Sbjct: 106 TQVYDIQVTPD 116
>gi|198284413|ref|YP_002220734.1| type II and III secretion system protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218666419|ref|YP_002427081.1| bacterial type II/III secretion system protein [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198248934|gb|ACH84527.1| type II and III secretion system protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218518632|gb|ACK79218.1| bacterial type II/III secretion system protein [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 478
Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL--EKEKTVVI 75
G + + I VG L F +V VG+ K V L + +I
Sbjct: 31 GGAHPSWAAHQSGGYRALNIPVGTQQTLSFTEPAYRVAVGNPKTASVAPLPRSGGRQFLI 90
Query: 76 TGKNLGSTNIIV 87
TG + G+T+++V
Sbjct: 91 TGLSTGTTSLLV 102
>gi|215433395|gb|ACJ66663.1| outer bacterial membrane secretin family protein [Myxococcus fulvus
HW-1]
Length = 482
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + VG ++ L +V +GD I DV L ++ITG+ G T ++V +
Sbjct: 31 VSLGVGSQKVITIPGL-SRVALGDPSIADVKTL-GSGQLLITGQAEGKTTLLVWKSSGQR 88
Query: 95 LLDTEIATFANEQSTV 110
+ +A + + V
Sbjct: 89 -VSYLVAVRKQDPNEV 103
>gi|311107631|ref|YP_003980484.1| type II and III secretion system family protein 2 [Achromobacter
xylosoxidans A8]
gi|310762320|gb|ADP17769.1| bacterial type II and III secretion system family protein 2
[Achromobacter xylosoxidans A8]
Length = 453
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL----EKEKTVVITGKNLGSTNIIVLGH 90
+ + QSL+L P ++ +GD + DV L ++ +V++ GK G+T + +
Sbjct: 45 MAVKGQQSLVLD-GGAPARIAIGDPDVADVKVLPATGKRAASVLLYGKKPGTTQLQIWTG 103
Query: 91 NNDI 94
NN
Sbjct: 104 NNAA 107
>gi|227819321|ref|YP_002823292.1| CpaC pilus assembly protein [Sinorhizobium fredii NGR234]
gi|227338320|gb|ACP22539.1| CpaC pilus assembly protein [Sinorhizobium fredii NGR234]
Length = 496
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ +A ++ ++ +++G +++DV+ L +++ I GK G+TNI V N +
Sbjct: 52 VTLAPNDTITVRTGKPFGDLVIGSAEMIDVVPLSD-QSLFIRGKQTGATNISVYDDNKAL 110
Query: 95 LLDTEIATFAN 105
+ ++ A+
Sbjct: 111 VGVIDVRVAAD 121
>gi|115526291|ref|YP_783202.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisA53]
gi|115520238|gb|ABJ08222.1| putative pilus assembly protein cpaB [Rhodopseudomonas palustris
BisA53]
Length = 268
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 93 DILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCL 128
++D+ + + V +Y SCTP C
Sbjct: 231 RSMVDSNVVATVTDDKQVTIYKGSEKEQYSCTPLCE 266
>gi|116620532|ref|YP_822688.1| type II and III secretion system protein [Candidatus Solibacter
usitatus Ellin6076]
gi|116223694|gb|ABJ82403.1| type II and III secretion system protein [Candidatus Solibacter
usitatus Ellin6076]
Length = 529
Score = 40.1 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
+ P ++ + VG+SLI+ + +++ V + ++++ +A+ K V+I GK
Sbjct: 49 GASQDVQPAPGPGKLMVTVGKSLIIDSPMNIQRISVANGELIEAVAV-NPKEVLINGKAA 107
Query: 81 GSTNIIVLGHNNDILL-DTEIATFANEQSTVR 111
G T +I+ + LL D + VR
Sbjct: 108 GETTLIIWQQGGNRLLYDLTVRISPVRLDVVR 139
>gi|92113782|ref|YP_573710.1| type II and III secretion system protein [Chromohalobacter
salexigens DSM 3043]
gi|91796872|gb|ABE59011.1| type II and III secretion system protein [Chromohalobacter
salexigens DSM 3043]
Length = 483
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
+P A Q + +R+ +G L F+ + +GD I + + +++TG
Sbjct: 56 AVPGLAQQ-----GESTLRLDIGDQQRLVFERPVSRTALGDGDIASAQMV-DARQLLLTG 109
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFANEQ 107
G+T++ V D ++
Sbjct: 110 LAAGTTSLSVWRDGRDAPQRYRVSVRPRGA 139
>gi|330862295|emb|CBX72456.1| hypothetical protein YEW_HH31880 [Yersinia enterocolitica W22703]
Length = 158
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 5/111 (4%)
Query: 1 MHRKRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDK 60
M R R + + + N+ + ++ GQS +++ V V
Sbjct: 1 MKVARTRYLNQIVLFLVCMIIACFIAVNRANAEPVYLSTGQSYMIKTQEEIDTVFVSAAA 60
Query: 61 IVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVR 111
I D + K +V K G+ I+ N+ + + I +T+
Sbjct: 61 IADYELVGKNSIIVY-AKQEGTAEFILFNQNHHPIKKSAILV----DNTIT 106
>gi|89899603|ref|YP_522074.1| type II and III secretion system protein [Rhodoferax ferrireducens
T118]
gi|89344340|gb|ABD68543.1| type II and III secretion system protein [Rhodoferax ferrireducens
T118]
Length = 571
Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 43/125 (34%), Gaps = 41/125 (32%)
Query: 9 IKNETVRKKGIPTTASQKTPEDNSNR-----------IRIAVGQSLILQFDVLPKQVIVG 57
++ +P A+ + S + I VG+S +L+ ++++G
Sbjct: 28 VQAGKATAAKLPAPATAPARQALSTTGLCSRVNIAPAVLIPVGKSTVLRPSSPVTRILLG 87
Query: 58 DDK-----------------------------IVDVLALEKEKT-VVITGKNLGSTNIIV 87
+ + + DV L T V + GK +G+TN+++
Sbjct: 88 NPENARAARPADTPEGKKEEGVKTPSVNTRPGVADVDVLLLAPTEVYLLGKTIGTTNVVM 147
Query: 88 LGHNN 92
L +
Sbjct: 148 LDRDG 152
>gi|87199101|ref|YP_496358.1| type II and III secretion system protein [Novosphingobium
aromaticivorans DSM 12444]
gi|87134782|gb|ABD25524.1| type II and III secretion system protein [Novosphingobium
aromaticivorans DSM 12444]
Length = 539
Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
+ + + I++G+ ++ V V D+++ DV ++ + + GK
Sbjct: 40 APLHAQGMTSPARTVTISIGRGELVTVPGRMADVFVADERVADVQ-VKSTNQLYVFGKAG 98
Query: 81 GSTNIIVLGHNNDILLDTEIATFANEQS 108
G T I D++ + N S
Sbjct: 99 GETTIYASNAKGDVVWSANVRVGNNLDS 126
>gi|319779649|ref|YP_004130562.1| Type II/IV secretion system secretin RcpA/CpaC [Taylorella
equigenitalis MCE9]
gi|317109673|gb|ADU92419.1| Type II/IV secretion system secretin RcpA/CpaC [Taylorella
equigenitalis MCE9]
Length = 508
Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 24 SQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST 83
+ + I++ +GQ +L F +V VG+ K+++ +K +V+ G + G T
Sbjct: 25 AYAQTTNTPKAIKMEIGQIEVLNF-QSIGRVAVGNSKLLNATT-SDDKELVLFGLSEGFT 82
Query: 84 NIIVLGHNNDILLDTEIATFANE 106
+ V + AN+
Sbjct: 83 TLQVWDKGGSSSSYRVVIESANQ 105
>gi|254523433|ref|ZP_05135488.1| type II and III secretion system protein:Transport-associated
[Stenotrophomonas sp. SKA14]
gi|219721024|gb|EED39549.1| type II and III secretion system protein:Transport-associated
[Stenotrophomonas sp. SKA14]
Length = 433
Score = 39.7 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 9/85 (10%), Positives = 31/85 (36%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
++ + + + ++V + D + D++ L ++ ++ GK G+T
Sbjct: 6 APATSVAADDLVLQAREQRPWSLPADLERVAIADPGVADIVMLRGQRQALLVGKAPGTTT 65
Query: 85 IIVLGHNNDILLDTEIATFANEQST 109
+++ ++ + Q
Sbjct: 66 LLLWHRKQAEPQRVQVRVQSAVQGA 90
>gi|73539231|ref|YP_299598.1| type II and III secretion system protein [Ralstonia eutropha
JMP134]
gi|72122568|gb|AAZ64754.1| type II and III secretion system protein [Ralstonia eutropha
JMP134]
Length = 469
Score = 39.7 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL---EKEKTVVITG 77
TA + P + +R+ G ++ ++V VG+ + D L + V++
Sbjct: 41 ATAQEAAPAPS--TLRLMAGAQKEIRPAQPIERVAVGNPAVADALLIKQRSGPPGVLVVA 98
Query: 78 KNLGSTNIIV 87
K G T++++
Sbjct: 99 KQPGVTDLMI 108
>gi|330959995|gb|EGH60255.1| type II and III secretion system protein [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 416
Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPK--QVIVGDDKIVDVLALEKEKTVVITGKN 79
A + + + Q + ++ VGD KI DV + + +TG
Sbjct: 28 AAPGSCSTLAAMPAAVEIDQGIQQNISSPVAITRIAVGDPKIADVHVSGNDGFL-LTGVA 86
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQST 109
G+T+++V + + + ++
Sbjct: 87 QGTTSLMVWTACSSAPRQSMVFVRGRATAS 116
>gi|197118220|ref|YP_002138647.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem]
gi|197087580|gb|ACH38851.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem]
Length = 494
Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 13/82 (15%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
+ + V +S+++ ++V + + +++ + + + I GK +GST +
Sbjct: 23 PVAAHAAVTTEVVVNRSVLVDLHTKSERVSIASPDVAELVVISPTQ-LQINGKKVGSTTL 81
Query: 86 IVLGHNNDILLDTEIATFANEQ 107
IV ++ NE
Sbjct: 82 IVWDTAGKTSF-FDVRVKRNES 102
>gi|86360580|ref|YP_472468.1| cpaC pilus assembly Q protein [Rhizobium etli CFN 42]
gi|86284682|gb|ABC93741.1| cpaC pilus assembly Q protein [Rhizobium etli CFN 42]
Length = 495
Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 20 PTTASQKTPEDNSNRIRIAV--GQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
+A +K+ + + + ++L L +++G ++DV+ L K++ I G
Sbjct: 34 SASAQEKSITLGESVQHVTLPPNETLTLNTGQPFGDLVIGSADMIDVVPLSD-KSLFIRG 92
Query: 78 KNLGSTNIIVLGHNNDILLDTEIATFAN 105
K G+TNI V G + +L +I ++
Sbjct: 93 KKTGATNISVYGDDKSLLGVIDIRVASD 120
>gi|33593025|ref|NP_880669.1| putative type II secretion system protein [Bordetella pertussis
Tohama I]
gi|33563400|emb|CAE42276.1| putative type II secretion system protein [Bordetella pertussis
Tohama I]
gi|332382437|gb|AEE67284.1| putative type II secretion system protein [Bordetella pertussis CS]
Length = 449
Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE----KEKTVVITGKNLGSTNIIVLGH 90
+ + V L+ D P +V + D ++ DV L + V++ G+ G+T + V
Sbjct: 42 LLLEVKGQQPLRLDAAPSRVAIADPQVADVKVLAPGVGRPGEVLLIGRQAGTTELRVWSR 101
Query: 91 NND 93
+
Sbjct: 102 GSR 104
>gi|33596969|ref|NP_884612.1| putative type II secretion system protein [Bordetella parapertussis
12822]
gi|33600811|ref|NP_888371.1| putative type II secretion system protein [Bordetella
bronchiseptica RB50]
gi|33566420|emb|CAE37673.1| putative type II secretion system protein [Bordetella
parapertussis]
gi|33568411|emb|CAE32323.1| putative type II secretion system protein [Bordetella
bronchiseptica RB50]
Length = 448
Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE----KEKTVVITGKNLGSTNIIVLGH 90
+ + V L+ D P +V + D ++ DV L + V++ G+ G+T + V
Sbjct: 41 LLLEVKGQQPLRLDAAPSRVAIADPQVADVKVLAPGVGRPGEVLLIGRQAGTTELRVWSR 100
Query: 91 NND 93
+
Sbjct: 101 GSR 103
>gi|115374949|ref|ZP_01462221.1| hypothetical protein STIAU_3535 [Stigmatella aurantiaca DW4/3-1]
gi|310819208|ref|YP_003951566.1| hypothetical protein STAUR_1935 [Stigmatella aurantiaca DW4/3-1]
gi|115368076|gb|EAU67039.1| hypothetical protein STIAU_3535 [Stigmatella aurantiaca DW4/3-1]
gi|309392280|gb|ADO69739.1| uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 249
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
R + G + V V D I L +++TGK GST +++L
Sbjct: 34 RFSLESGADRFHKLS-AVDWVEVEDPSIATAEVLSGSNELLLTGKRPGST-LLLLYAEGK 91
>gi|91777217|ref|YP_552425.1| putative type II and III secretion system outermembrane protein,
secretin [Burkholderia xenovorans LB400]
gi|91689877|gb|ABE33075.1| Putative type II and III secretion system outermembrane protein,
secretin [Burkholderia xenovorans LB400]
Length = 595
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
+P ++ + + G+ IL K++ +G+ K++ ++ ++++ G+ G T+++
Sbjct: 49 SPSASTRVLEMFRGEVRILHIPGTIKRIAIGNGKLLTANVVD--GSLMLLGEQDGITSLV 106
Query: 87 VLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF 120
V L T A +++ S
Sbjct: 107 VWNDKGIALQTTVRIAKAEVNASLEQLRAVLRSV 140
>gi|328952514|ref|YP_004369848.1| type II and III secretion system protein [Desulfobacca acetoxidans
DSM 11109]
gi|328452838|gb|AEB08667.1| type II and III secretion system protein [Desulfobacca acetoxidans
DSM 11109]
Length = 536
Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 17 KGIPTTASQKTP-EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
G A ++ + RI IA S + + +V++ + + D L + + I
Sbjct: 69 SGRAVLAENESDFASKAGRIVIAPHMSFVKRTQRPITRVVLANPSLADAELLTPTQ-LFI 127
Query: 76 TGK-NLGSTNIIVLGHNNDILLDTEIATFANE 106
GK G T++ + +N EI ++
Sbjct: 128 VGKVKQGVTSLTLWHGDNYAET-YEIVVSFDD 158
>gi|320170777|gb|EFW47676.1| WD repeat-containing protein SAZD [Capsaspora owczarzaki ATCC
30864]
Length = 1038
Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 28/120 (23%)
Query: 26 KTPEDNSNRIRIAVGQSLILQFDVLPKQV---IVG-DDKIVDVLALEKEKTVVITGKN-- 79
+P +S I + I Q D +V IVG +D+I+D+ + + + V+ N
Sbjct: 346 ASPATSS--IFVVTDDQNIFQLDDTTLEVKKQIVGQNDEIIDLRFIGDDDSHVVMATNSE 403
Query: 80 ---------------LGSTNIIV-LGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSC 123
G T+I++ L +ND LL A + +TVR + C
Sbjct: 404 QLRTFDLATFGARLLYGHTDIVLCLDVSNDGLL----LVSAGKDNTVRAWQSEDRLNFDC 459
>gi|327189767|gb|EGE56911.1| cpaC pilus assembly Q protein [Rhizobium etli CNPAF512]
Length = 495
Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 40 GQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTE 99
++L L +++G ++DV+ L K++ + GK G+TNI V G + +L +
Sbjct: 56 NETLTLNTGQPFGDLVIGSADMIDVVPLSD-KSLFVRGKKTGATNISVYGDDKSLLGVID 114
Query: 100 IATFAN 105
I ++
Sbjct: 115 IRVASD 120
>gi|218459699|ref|ZP_03499790.1| cpaC pilus assembly Q protein [Rhizobium etli Kim 5]
Length = 409
Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 40 GQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTE 99
++L L +++G ++DV+ L +++ + GK +G+TNI V G + +L +
Sbjct: 56 NETLTLNTGQPFGDLVIGSADMIDVVPLSD-RSLFVRGKKIGATNISVYGDDKSLLGVID 114
Query: 100 IATFAN 105
I ++
Sbjct: 115 IRVASD 120
>gi|222094636|ref|YP_002528696.1| s-layer protein ea1 [Bacillus cereus Q1]
gi|221238694|gb|ACM11404.1| s-layer protein ea1 [Bacillus cereus Q1]
Length = 889
Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 9/93 (9%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
T A Q + + + + +D V VG+ +I V + KT+++ G+
Sbjct: 644 NTVAYQLSNYTTEG---VYADAAKLEGYD-----VRVGNSEIATVEFGKDGKTLLVKGEK 695
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQSTVRV 112
G T+ ++L + I V
Sbjct: 696 AGVTD-VILTKDGATAGHATITVTQENIKITSV 727
>gi|229120516|ref|ZP_04249762.1| hypothetical protein bcere0016_8280 [Bacillus cereus 95/8201]
gi|228662932|gb|EEL18526.1| hypothetical protein bcere0016_8280 [Bacillus cereus 95/8201]
Length = 882
Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
T A Q + + + + +D+ VG+ +I + KT+++TG
Sbjct: 642 NTVAYQLSNYTTEG---VYADAAKLEGYDLR-----VGNSEIATAEFGKDGKTLLVTGHK 693
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQSTVRV 112
G T+ ++L + I V
Sbjct: 694 AGVTD-VILTKDGATAGHATITVTQENIQITSV 725
>gi|254430015|ref|ZP_05043722.1| hypothetical protein ADG881_3245 [Alcanivorax sp. DG881]
gi|196196184|gb|EDX91143.1| hypothetical protein ADG881_3245 [Alcanivorax sp. DG881]
Length = 873
Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 19/127 (14%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVI-------------VGDD 59
T PT P IR+ ++ ++ +VI +GD
Sbjct: 30 TSNPPAEPTPNEPAEPIAGEGEIRVLSNRADLISGGDALVEVITPDAAQLEGAVVTLGDR 89
Query: 60 KIVDVLALEKEKTV--VITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGT 117
+ D L T+ +I G LGS + V+ ++ +L I V +
Sbjct: 90 AVTDQLTATDAGTLKGLINGLALGSNRLTVVLADDSVL--ERIIINHPNGGPVI--SGPQ 145
Query: 118 LSFLSCT 124
+ CT
Sbjct: 146 IQPWQCT 152
>gi|224588139|gb|ACN58763.1| conserved hypothetical protein [uncultured bacterium BLR8]
Length = 608
Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 3 RKRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIV 56
R + E++ R G A ++T E +R+A + +Q + L +QV+V
Sbjct: 74 RAARGELRGAAARCDGADAPAGERTREFGDVLLRVASAHAERVQLEDLARQVLV 127
>gi|70734199|ref|YP_257839.1| type II/III secretion system protein [Pseudomonas fluorescens Pf-5]
gi|68348498|gb|AAY96104.1| bacterial type II/III secretion system protein [Pseudomonas
fluorescens Pf-5]
Length = 417
Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
A + + I G LQ V ++ VGD KI DV K ++TG
Sbjct: 28 AAVAGCSSLAPLPAALEIGEGLQQELQSAVAITRLAVGDPKIADVQT-TGNKAFLLTGMA 86
Query: 80 LGSTNIIVLGHNNDILLDTEIATFANEQS 108
G+T+++V + + +
Sbjct: 87 PGATSLMVWTACASTPRQSMVFVQGRATA 115
>gi|94312586|ref|YP_585795.1| pilus assembly protein [Cupriavidus metallidurans CH34]
gi|93356438|gb|ABF10526.1| pilus assembly protein [Cupriavidus metallidurans CH34]
Length = 473
Score = 38.1 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE---KEKTVVITGKNLGSTN 84
S +R+ G ++ ++V VG+ ++ D L L+ TV++ + G T+
Sbjct: 50 DTAGSRTLRLLAGAQQEIRPGQALERVAVGNPEVADALLLKHRGGPSTVLVVARKPGVTD 109
Query: 85 IIVLGHNNDIL 95
+ + + +
Sbjct: 110 LKIWSRDVAPV 120
>gi|78486068|ref|YP_391993.1| type II and III secretion system protein [Thiomicrospira
crunogena XCL-2]
gi|78364354|gb|ABB42319.1| Flp (type IV) pilus assembly protein CpaC homolog [Thiomicrospira
crunogena XCL-2]
Length = 520
Score = 38.1 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 41 QSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+S I++FD K+ +V + + ++ L K ++++GK G T +I+
Sbjct: 37 ESQIVKFDYPIKRALVANPDLANLKVL-NSKELLVSGKQAGKTELII 82
>gi|221066739|ref|ZP_03542844.1| type II and III secretion system protein [Comamonas testosteroni
KF-1]
gi|220711762|gb|EED67130.1| type II and III secretion system protein [Comamonas testosteroni
KF-1]
Length = 467
Score = 38.1 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT-----VV 74
S TP ++ + + +G +L + ++ VGD ++DV L ++
Sbjct: 37 AGVVSVATPTGAASPLPLTMGSQHVLLPAMPLARLAVGDPNVLDVKVLRSTGNSSAPELL 96
Query: 75 ITGKNLGSTNIIVLGHNN 92
+T K GST + +
Sbjct: 97 LTPKAPGSTTLSIWSTRG 114
>gi|323529159|ref|YP_004231311.1| type II and III secretion system protein [Burkholderia sp.
CCGE1001]
gi|323386161|gb|ADX58251.1| type II and III secretion system protein [Burkholderia sp.
CCGE1001]
Length = 597
Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 15/100 (15%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 12 ETVRKKGIPTTASQKTPEDNSNRIRIAV--GQSLILQFDVLPKQVIVGDDKIVDVLALEK 69
E ++ T + ++ + + G+ IL+ K++ +G+ K++ ++
Sbjct: 26 EAAPLALAQGASASATDDASATTHVLEMFRGEVRILRLPGTIKRIAIGNGKLITANVVDG 85
Query: 70 EKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
+++ G+ G T+++V L T + E +
Sbjct: 86 N--LMLLGEQDGMTSLVVWNEKGIAL-QTTVRIAKAEVNA 122
>gi|297568753|ref|YP_003690097.1| type II and III secretion system protein [Desulfurivibrio
alkaliphilus AHT2]
gi|296924668|gb|ADH85478.1| type II and III secretion system protein [Desulfurivibrio
alkaliphilus AHT2]
Length = 406
Score = 38.1 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 13/112 (11%), Positives = 35/112 (31%), Gaps = 12/112 (10%)
Query: 20 PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKN 79
P + + +R+ ++ D +V V D I++V + +++ + +T
Sbjct: 25 PGAVAAAPDSWRPDSLRLEAQSQHVISRDQPIIRVAVADPSIMEVEMISQQELL-LTALA 83
Query: 80 LGSTNIIVLGHNNDILLDTEIAT-----------FANEQSTVRVYTPGTLSF 120
G+T + + + + + + V V
Sbjct: 84 PGATQLRLWHQETEPEMLRVVVVPAAPYQDYDIQVRADIRVVEVSRRALRQS 135
>gi|152974538|ref|YP_001374055.1| S-layer domain-containing protein [Bacillus cereus subsp. cytotoxis
NVH 391-98]
gi|152023290|gb|ABS21060.1| S-layer domain protein [Bacillus cytotoxicus NVH 391-98]
Length = 879
Score = 38.1 bits (87), Expect = 0.43, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 56 VGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRV 112
VG+++I + KT+ +TGK G T+ ++L + I V
Sbjct: 673 VGNEEIAEAKI--DGKTLKVTGKKAGVTD-VILTKDGATAGHATITVTQENIQITSV 726
>gi|238897548|ref|YP_002923227.1| putative tight adherance operon protein [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229465305|gb|ACQ67079.1| putative tight adherance operon protein [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 459
Score = 38.1 bits (87), Expect = 0.44, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 22 TASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLG 81
T N+ + ++ G+SL+++ V V + + D + TV+I K G
Sbjct: 22 TLPGSANAANTGDLFMSEGESLVIKKKQNIDTVFVSNPAVADYKIV-DHNTVIIYAKAEG 80
Query: 82 STNIIVLGHNND------ILLDTEIATFAN 105
+ N + +++D I ++
Sbjct: 81 KSEFTFFEPNQNISYHATVMVDNIIKVVSD 110
>gi|51245387|ref|YP_065271.1| hypothetical protein DP1535 [Desulfotalea psychrophila LSv54]
gi|50876424|emb|CAG36264.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
Length = 480
Score = 37.7 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVL--ALEKEKTVVITGKNLGSTNIIVLGHNN 92
+++ + + L+ + ++ + + I +++ + V ++GK++G+T + + G N
Sbjct: 44 VQLTINRLAKLRSSEVIRRAHIVNPDIAELIYSKTQSPAWVFVSGKSIGTTQLTLWGARN 103
Query: 93 DILLDTEIATFAN 105
IL EI +
Sbjct: 104 KILGTFEIIVRPD 116
>gi|194366097|ref|YP_002028707.1| type II and III secretion system protein [Stenotrophomonas
maltophilia R551-3]
gi|194348901|gb|ACF52024.1| type II and III secretion system protein [Stenotrophomonas
maltophilia R551-3]
Length = 452
Score = 37.7 bits (86), Expect = 0.57, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
++ + + + ++V + D + D++ L ++ ++ GK G+T +++
Sbjct: 31 AADDLVLQAREQRPWTLPADLERVAIADPGVADIVMLRGQRQALLVGKAPGTTTLLLWHR 90
Query: 91 NNDILLDTEIATF------ANEQSTVRVYTPGTLSFL 121
++ A+ S V+T L
Sbjct: 91 KQAEPQRMQVRVQSAVQGAADTGSGGLVFTQQDNQGL 127
>gi|326434914|gb|EGD80484.1| hypothetical protein PTSG_11127 [Salpingoeca sp. ATCC 50818]
Length = 2651
Score = 37.7 bits (86), Expect = 0.59, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 6/117 (5%)
Query: 7 REIKNETVRKKGI--PTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDV 64
R I T R + I + A T N + + + Q ++ V +V +
Sbjct: 2121 RRITKMTSRLRSIDLASAAPLLTRRQNFDMVVPGMYQVKPVE---PVPTVAKFLPSVVVI 2177
Query: 65 LALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFL 121
+ ++ + + + + G+T +L D +D + TF +T+ P T S
Sbjct: 2178 PSKQRPRKIRLI-DSTGTTQQYLLKGQEDPRMDERVMTFLGLVNTLLAGDPSTRSDY 2233
>gi|163801327|ref|ZP_02195226.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4]
gi|159174816|gb|EDP59616.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4]
Length = 416
Score = 37.4 bits (85), Expect = 0.61, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVL 88
I ++V ++ L +PK ++VG DK+VDV L + + G T +IV
Sbjct: 31 AQADTFINMSVNETKHLPLSYVPKDIVVGSDKVVDVN-LADSNNLYLIAHEAGKTKVIVK 89
Query: 89 GHNNDILLDTEIATFANEQST 109
G + I ++ T
Sbjct: 90 GEEETT--EYVIQVRDTDKDT 108
>gi|317133812|ref|YP_004089723.1| Ig domain protein group 2 domain protein [Ruminococcus albus 7]
gi|315450274|gb|ADU23837.1| Ig domain protein group 2 domain protein [Ruminococcus albus 7]
Length = 467
Score = 37.4 bits (85), Expect = 0.65, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 53 QVIVGDDKIVDVLALE-KEKTVVITGKNLGSTNIIVLGHNNDILLDTEI-----ATFANE 106
V+VGD I D + +++TGK G+T I G + +D +I T
Sbjct: 232 TVLVGDTDIADYEFDQTNPNGIIVTGKKAGTTTITFTGDSWTDTIDDDISAVLTVTVNKA 291
Query: 107 QSTVRVYTPGTLSFLS 122
STV V +
Sbjct: 292 DSTVTVAPTANELTYT 307
>gi|186473164|ref|YP_001860506.1| type II and III secretion system protein [Burkholderia phymatum
STM815]
gi|184195496|gb|ACC73460.1| type II and III secretion system protein [Burkholderia phymatum
STM815]
Length = 451
Score = 37.4 bits (85), Expect = 0.67, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 17 KGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
+G+ A+Q N+ + + G+ +L K++ +G+ K++ ++ V++
Sbjct: 37 RGVDADAAQ-----NAAVLDLYKGEVRMLNVPGTIKRIAIGNGKLLTANVVD--GRVMLL 89
Query: 77 GKNLGSTNIIVLGHNNDILLDTEIATFANEQS 108
++ G T+++V L T + +
Sbjct: 90 AESAGITSLVVWNERGVAL-QTTVRVAKGDVG 120
>gi|114321311|ref|YP_742994.1| type II and III secretion system protein [Alkalilimnicola ehrlichii
MLHE-1]
gi|114227705|gb|ABI57504.1| type II and III secretion system protein [Alkalilimnicola ehrlichii
MLHE-1]
Length = 428
Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Query: 19 IPTTASQKTPEDNSNRIR----IAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVV 74
I +Q + ++ + + G L F +V VGD + D+ + + ++
Sbjct: 29 ISGNVAQAGCDRVNSVLPHVKHLDAGVHKRLTFPTRVTRVAVGDPDVADLEIIGD-RELL 87
Query: 75 ITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVR 111
+TG + G T++ V ND T + A E V
Sbjct: 88 LTGVDGGLTSVYVWTTCNDRPDRTLVIVSAREALQVH 124
>gi|223985201|ref|ZP_03635286.1| hypothetical protein HOLDEFILI_02592 [Holdemania filiformis DSM
12042]
gi|223962818|gb|EEF67245.1| hypothetical protein HOLDEFILI_02592 [Holdemania filiformis DSM
12042]
Length = 1122
Score = 37.4 bits (85), Expect = 0.69, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 36 RIAVGQSLILQFDVLPKQVIVGDDKIVDVLALE-KEKTVVITGKNLGSTNIIVL 88
++ V + L D + I+ + I D L+ E+ + ITGK G T + +
Sbjct: 981 KLLVNEPTKLHLDRNVEDQIIWN--IADPSILDLDEENLEITGKKPGITKLTAM 1032
>gi|323343653|ref|ZP_08083880.1| hypothetical protein HMPREF0663_10415 [Prevotella oralis ATCC
33269]
gi|323095472|gb|EFZ38046.1| hypothetical protein HMPREF0663_10415 [Prevotella oralis ATCC
33269]
Length = 326
Score = 37.4 bits (85), Expect = 0.70, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 19 IPTTASQKTPEDNSNRIRIAVGQSLILQF--DVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
IP + +++ ++++VG+S +VI + KI V IT
Sbjct: 32 IPEAKEKSKLTFDTDTLKVSVGESATFNITAGGGDYKVISENPKIAQGTV--NGSVVTIT 89
Query: 77 GKNLGSTNIIVLGHNND 93
+ G T II+ + +
Sbjct: 90 CSDKGLTGIIISDADGN 106
>gi|152981036|ref|YP_001355006.1| pilus assembly protein CpaC [Janthinobacterium sp. Marseille]
gi|151281113|gb|ABR89523.1| pilus assembly protein CpaC [Janthinobacterium sp. Marseille]
Length = 429
Score = 37.4 bits (85), Expect = 0.72, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 45 LQFDVLPK--QVIVGDDKIVDVLALE----KEKTVVITGKNLGSTNIIVLGHNN 92
LQ ++ V D ++ D+L ++ + ++++ GK GST++ N
Sbjct: 33 LQLKTPADLERIAVADPEVADILIIKGSNKRPGSIMLVGKKPGSTSVTAWQRNG 86
>gi|187921506|ref|YP_001890538.1| type II and III secretion system protein [Burkholderia phytofirmans
PsJN]
gi|187719944|gb|ACD21167.1| type II and III secretion system protein [Burkholderia phytofirmans
PsJN]
Length = 561
Score = 37.4 bits (85), Expect = 0.74, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+ + G+ IL K++ +G+ K+V ++ ++++ G+ G T+++V
Sbjct: 50 VLEMFRGEVRILHVPGTIKRIAIGNGKLVTANVVD--GSLMLLGERDGITSLVVWNEKGI 107
Query: 94 ILLDTEIATFANEQSTVRVYTPGTLSF 120
L T A ++V S
Sbjct: 108 ALQTTVRIAKAEVSASVEQLRAVLQSV 134
>gi|160897515|ref|YP_001563097.1| type II and III secretion system protein [Delftia acidovorans
SPH-1]
gi|160363099|gb|ABX34712.1| type II and III secretion system protein [Delftia acidovorans
SPH-1]
Length = 492
Score = 37.4 bits (85), Expect = 0.78, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 9/92 (9%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL---------EKEKTV 73
A + + +++ G+ ++ P ++ VGD ++DV L +
Sbjct: 48 APGAGDMPSGDSLQLVAGRQHLMPLASTPGRIAVGDPNVLDVKLLRATPGSGAGAGGTEL 107
Query: 74 VITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
++T K GST ++V E+
Sbjct: 108 LLTPKAQGSTTLVVWPQKGGAPQRWEVQVRGQ 139
>gi|190574779|ref|YP_001972624.1| putative exported fimbriae assembly protein [Stenotrophomonas
maltophilia K279a]
gi|190012701|emb|CAQ46329.1| putative exported fimbriae assembly protein [Stenotrophomonas
maltophilia K279a]
Length = 451
Score = 37.0 bits (84), Expect = 0.79, Method: Composition-based stats.
Identities = 9/79 (11%), Positives = 31/79 (39%)
Query: 31 NSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH 90
++ + + + ++V + D + D++ L ++ ++ GK G+T +++
Sbjct: 30 AADDLVLQAREQRPWTLPADLERVAIADPGVADIVMLRGQRQALLVGKAPGTTTLLLWHR 89
Query: 91 NNDILLDTEIATFANEQST 109
++ + Q
Sbjct: 90 KQAEPQRLQVRVQSAVQGA 108
>gi|317028494|ref|XP_001390179.2| phosphatidylserine decarboxylase [Aspergillus niger CBS 513.88]
Length = 339
Score = 37.0 bits (84), Expect = 0.85, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 44 ILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATF 103
I + D VIV D ++V A+ + K + I G + TN+++ D +A+F
Sbjct: 132 IYRKDDPTAAVIVADSRVVAYEAVAESKKIWIKGNDFSITNLVMDKQLGPKFADGPVASF 191
Query: 104 A 104
Sbjct: 192 R 192
>gi|134057856|emb|CAK44587.1| unnamed protein product [Aspergillus niger]
Length = 364
Score = 37.0 bits (84), Expect = 0.85, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 44 ILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATF 103
I + D VIV D ++V A+ + K + I G + TN+++ D +A+F
Sbjct: 149 IYRKDDPTAAVIVADSRVVAYEAVAESKKIWIKGNDFSITNLVMDKQLGPKFADGPVASF 208
Query: 104 A 104
Sbjct: 209 R 209
>gi|163857691|ref|YP_001631989.1| putative Flp pilus assembly secretin [Bordetella petrii DSM 12804]
gi|163261419|emb|CAP43721.1| putative Flp pilus assembly secretin [Bordetella petrii]
Length = 464
Score = 37.0 bits (84), Expect = 0.88, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK----TVVITGKNLGSTNIIV 87
S I +AV +L P ++ V D + DV L V++ GK+ G+T + V
Sbjct: 46 SQDISLAVKGQQLLPLPGTPTRIAVADPDVADVKVLPAAAGRPAAVMLIGKSAGTTQVQV 105
Query: 88 LGHNNDILLDTEIATFAN 105
N+ +
Sbjct: 106 WARNSRSPATWTVHVTGP 123
>gi|18407388|ref|NP_566103.1| pectinesterase family protein [Arabidopsis thaliana]
gi|75277251|sp|O22256|PME20_ARATH RecName: Full=Probable pectinesterase/pectinesterase inhibitor 20;
Includes: RecName: Full=Pectinesterase inhibitor 20;
AltName: Full=Pectin methylesterase inhibitor 20;
Includes: RecName: Full=Pectinesterase 20; Short=PE 20;
AltName: Full=Pectin methylesterase 20; Short=AtPME20;
Flags: Precursor
gi|20196963|gb|AAC62855.2| putative pectinesterase [Arabidopsis thaliana]
gi|330255763|gb|AEC10857.1| pectinesterase 20 [Arabidopsis thaliana]
Length = 560
Score = 37.0 bits (84), Expect = 0.91, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 13/100 (13%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPK-QVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
T + + + ++ VI G+ +VD T +++G N NI
Sbjct: 282 TAGLYEEYVEVPKNKRYVMMIGDGINQTVITGNRSVVDGWTTFNSATFILSGPNFIGVNI 341
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF-LSCT 124
+ + V + + G LS SC+
Sbjct: 342 TIRNTAG-----------PTKGQAVALRSGGDLSVFYSCS 370
>gi|167628276|ref|YP_001678775.1| multidomain protein with s-layer homology region, ig motif, i-set
domain, pkd domain [Heliobacterium modesticaldum Ice1]
gi|167591016|gb|ABZ82764.1| multidomain protein with s-layer homology region, ig motif, i-set
domain, pkd domain [Heliobacterium modesticaldum Ice1]
Length = 2124
Score = 37.0 bits (84), Expect = 0.98, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 24/70 (34%)
Query: 38 AVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLD 97
A + + D L IV A TV +TG +GST+++V + D
Sbjct: 204 AADIAEDVDNDPLTITAIVTGPDSAKATASLDSGTVTLTGVAVGSTSLVVTVSDGTDTAD 263
Query: 98 TEIATFANEQ 107
+
Sbjct: 264 VTVPVSVTAA 273
Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 28/100 (28%), Gaps = 4/100 (4%)
Query: 12 ETVRKKGIPTTASQKTPEDNSNRIRIAV----GQSLILQFDVLPKQVIVGDDKIVDVLAL 67
T P TA P + A + D L IV A
Sbjct: 1064 NTAPPANNPPTAKNPVPTQSVTAGGTATFTASDIAEDTDNDPLTITAIVTGPDTAKATAS 1123
Query: 68 EKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQ 107
TV +TG G T+++V ++ D +
Sbjct: 1124 LNSGTVTLTGVAAGDTSVVVTVYDGTDTADVTVPVSVTAA 1163
>gi|330976799|gb|EGH76834.1| type II and III secretion system protein [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 416
Score = 37.0 bits (84), Expect = 0.99, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 1/92 (1%)
Query: 16 KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
+ S + I G ++ V ++ VGD KI DV + + +
Sbjct: 24 PGAWAASGSCAGLAAMPAAVEIDQGIQQEVRSAVPITRIAVGDPKIADVHVNGTDGFL-L 82
Query: 76 TGKNLGSTNIIVLGHNNDILLDTEIATFANEQ 107
TG G+T+++V + +
Sbjct: 83 TGVAQGTTSLMVWTACASAPRQSMVFVRGRAT 114
>gi|330953053|gb|EGH53313.1| type II and III secretion system protein [Pseudomonas syringae Cit
7]
Length = 416
Score = 37.0 bits (84), Expect = 0.99, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 1/92 (1%)
Query: 16 KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
+ S + I G ++ V ++ VGD KI DV + + +
Sbjct: 24 PGAWAASGSCAGLAAMPAAVEIDQGIQQEVRSAVPITRIAVGDPKIADVHVNGTDGFL-L 82
Query: 76 TGKNLGSTNIIVLGHNNDILLDTEIATFANEQ 107
TG G+T+++V + +
Sbjct: 83 TGVAQGTTSLMVWTACASAPRQSMVFVRGRAT 114
>gi|330895618|gb|EGH27925.1| type II and III secretion system protein [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 416
Score = 37.0 bits (84), Expect = 0.99, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 1/92 (1%)
Query: 16 KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
+ S + I G ++ V ++ VGD KI DV + + +
Sbjct: 24 PGAWAASGSCAGLAAMPAAVEIDQGIQQEVRSAVPITRIAVGDPKIADVHVNGTDGFL-L 82
Query: 76 TGKNLGSTNIIVLGHNNDILLDTEIATFANEQ 107
TG G+T+++V + +
Sbjct: 83 TGVAQGTTSLMVWTACASAPRQSMVFVRGRAT 114
>gi|66047618|ref|YP_237459.1| type II and III secretion system protein [Pseudomonas syringae pv.
syringae B728a]
gi|63258325|gb|AAY39421.1| type II and III secretion system protein [Pseudomonas syringae pv.
syringae B728a]
Length = 416
Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 1/92 (1%)
Query: 16 KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
+ S + I G ++ V ++ VGD KI DV + + +
Sbjct: 24 PGAWAASGSCAGLAAMPAAVEIDQGIQQEVRSAVPITRIAVGDPKIADVHVNGTDGFL-L 82
Query: 76 TGKNLGSTNIIVLGHNNDILLDTEIATFANEQ 107
TG G+T+++V + +
Sbjct: 83 TGVAQGTTSLMVWTACASAPRQSMVFVRGRAT 114
>gi|331092898|ref|ZP_04586842.2| type II and III secretion system protein [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331021233|gb|EGI01290.1| type II and III secretion system protein [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 416
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 1/94 (1%)
Query: 16 KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
+ S I I G +Q V ++ VGD K+ DV + ++
Sbjct: 24 PSAWAASGSCNGLAAMPAAIEIDQGIQQNVQSPVAITRIAVGDPKVADVH-VSNSDGFLL 82
Query: 76 TGKNLGSTNIIVLGHNNDILLDTEIATFANEQST 109
TG G+T+++V + + + ++
Sbjct: 83 TGVAQGTTSLMVWTACSSAPRQSMVFVRGRASAS 116
>gi|16604402|gb|AAL24207.1| At2g47550/T30B22.15 [Arabidopsis thaliana]
Length = 345
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 13/100 (13%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPK-QVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
T + + + ++ VI G+ +VD T +++G N NI
Sbjct: 67 TAGLYEEYVEVPKNKRYVMMIGDGINQTVITGNRSVVDGWTTFNSATFILSGPNFIGVNI 126
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF-LSCT 124
+ + V + + G LS SC+
Sbjct: 127 TIRNTAG-----------PTKGQAVALRSGGDLSVFYSCS 155
>gi|162456063|ref|YP_001618430.1| WD-40 repeat-containing protein [Sorangium cellulosum 'So ce 56']
gi|161166645|emb|CAN97950.1| WD-40 repeat protein [Sorangium cellulosum 'So ce 56']
Length = 1177
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 15/117 (12%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
++ G ++ +P D+ + G + IL D V+ G + V A +
Sbjct: 710 ALKGHGPGVESADTSPVDDRIVLATGDGTARILGADRREPVVLRGHEGAVRGAAFSADGG 769
Query: 73 VVITGKNLGSTNIIVLGHNNDILL---------------DTEIATFANEQSTVRVYT 114
V+T G+ + ++ D A+E T RV+
Sbjct: 770 AVVTASADGTARVFRADGKGAPVVLEGHEGVVNSAAFSRDGASVVTASEDGTARVWR 826
>gi|27363394|gb|AAO11616.1| At2g47550/T30B22.15 [Arabidopsis thaliana]
Length = 345
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 13/100 (13%)
Query: 27 TPEDNSNRIRIAVGQSLILQFDVLPK-QVIVGDDKIVDVLALEKEKTVVITGKNLGSTNI 85
T + + + ++ VI G+ +VD T +++G N NI
Sbjct: 67 TAGLYEEYVEVPKNKRYVMMIGDGINQTVITGNRSVVDGWTTFNSATFILSGPNFIGVNI 126
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF-LSCT 124
+ + V + + G LS SC+
Sbjct: 127 TIRNTAG-----------PTKGQAVALRSGGDLSVFYSCS 155
>gi|325275757|ref|ZP_08141634.1| type II/IV secretion system protein D [Pseudomonas sp. TJI-51]
gi|324099108|gb|EGB97077.1| type II/IV secretion system protein D [Pseudomonas sp. TJI-51]
Length = 310
Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNII 86
I I G L+ V ++V VG+ K+ DV A E+ VVIT G+T+++
Sbjct: 38 IIEIDQGLQQELRLPVAIERVAVGEPKVADVQA-SGERGVVITAVGQGNTSLM 89
>gi|330819176|ref|YP_004348038.1| type II and III secretion system protein [Burkholderia gladioli
BSR3]
gi|327371171|gb|AEA62526.1| type II and III secretion system protein [Burkholderia gladioli
BSR3]
Length = 564
Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 13/98 (13%), Positives = 34/98 (34%), Gaps = 13/98 (13%)
Query: 25 QKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTN 84
+ + + G+ ++ K++ +GD +V ++ +++ + G T+
Sbjct: 41 ENATPAQHALLDLYRGEIRLIDVPGRIKRIAIGDGSLVTANVVD--GRLMLLAEKAGVTS 98
Query: 85 IIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLS 122
++ N L +TVRV +
Sbjct: 99 LVAWTANGIAL-----------NTTVRVAKGNVRETAA 125
>gi|330873641|gb|EGH07790.1| type II/III secretion system protein [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 416
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 16 KKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVI 75
+ S + I G ++ V ++ VGD KI DV + + +
Sbjct: 24 PSAWAASGSCAGLAAMPAAMEIDQGIQQNVRSSVAITRIAVGDPKIADVHVNGSDGFL-L 82
Query: 76 TGKNLGSTNIIV 87
TG G+T+++V
Sbjct: 83 TGVAQGTTSLMV 94
>gi|302185189|ref|ZP_07261862.1| type II and III secretion system protein [Pseudomonas syringae pv.
syringae 642]
Length = 416
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 36 RIAVGQS--LILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+ + Q ++ V ++ VGD KI DV + + +TG G+T+++V
Sbjct: 42 AVEIDQGIQQEVRSAVPITRIAVGDPKIADVHVNGTDGFL-LTGVAQGTTSLMVWTACAS 100
Query: 94 ILLDTEIATFANEQ 107
+ +
Sbjct: 101 APRQSMVFVRGRAT 114
>gi|206975634|ref|ZP_03236546.1| S-layer protein EA1 [Bacillus cereus H3081.97]
gi|1351072|sp|P49052|SLAP_BACLI RecName: Full=S-layer protein; AltName: Full=Surface layer protein;
Flags: Precursor
gi|1055337|gb|AAC44405.1| S-layer protein [Bacillus licheniformis]
gi|206746096|gb|EDZ57491.1| S-layer protein EA1 [Bacillus cereus H3081.97]
Length = 874
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 56 VGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRV 112
VG+DKI + KT+ +TGK G T+ ++L + I V
Sbjct: 670 VGNDKIASAKI--EGKTLKVTGKTAGVTD-VILTKDGATAGHATITVTQENIQITSV 723
>gi|209546483|ref|YP_002278401.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|209537727|gb|ACI57661.1| type II and III secretion system protein [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length = 495
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 12 ETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEK 71
K + Q+ + + + GQ+ +++G ++DV+ L K
Sbjct: 36 NAQEKSVTLGKSVQRVTLPPNATLTLNTGQA--------FGDLVIGSADMIDVVPLSD-K 86
Query: 72 TVVITGKNLGSTNIIVLGHNNDILLDTEIATFAN 105
++ I GK +G+TNI V G + +L ++ ++
Sbjct: 87 SLFIRGKKIGATNISVYGDDKSLLGVIDVRVASD 120
>gi|31321894|gb|AAK84428.1| papillar cell-specific pectin methylesterase-like protein [Brassica
napus]
Length = 562
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 48 DVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQ 107
D + + VI G+ +VD K T ++TG N NI + +A +
Sbjct: 306 DGINQTVITGNRSVVDGWTTFKSATFILTGPNFIGVNITIRNTAG-PTKGQAVALRSGGD 364
Query: 108 STVRVYTPGTLSFLSCT 124
+V F SC+
Sbjct: 365 FSV---------FYSCS 372
>gi|229028679|ref|ZP_04184792.1| hypothetical protein bcere0028_7920 [Bacillus cereus AH1271]
gi|228732642|gb|EEL83511.1| hypothetical protein bcere0028_7920 [Bacillus cereus AH1271]
Length = 874
Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 56 VGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRV 112
VG+D I + KT+ +TGK G T+ ++L + I V
Sbjct: 669 VGNDAIASAKI--EGKTLKVTGKTAGVTD-VILTKDGATAGHATITVTQENIQITSV 722
>gi|257483347|ref|ZP_05637388.1| type II and III secretion system protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|331012566|gb|EGH92622.1| type II and III secretion system protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 416
Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 36 RIAVGQSLILQFDVLPK--QVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+ + Q + + ++ VGD KI DV + + +TG G+T+++V
Sbjct: 42 AVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFL-LTGVAQGTTSLMVWTACAT 100
Query: 94 ILLDTEIATFANEQST 109
+ + ++
Sbjct: 101 APRQSMVFVRGRATAS 116
>gi|305665142|ref|YP_003861429.1| putative outer membrane protein [Maribacter sp. HTCC2170]
gi|88709894|gb|EAR02126.1| putative outer membrane protein, probably involved in nutrient
binding [Maribacter sp. HTCC2170]
Length = 1076
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 8/80 (10%)
Query: 35 IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST--NIIVLGHNN 92
+ +SL+ + Q+I+G+ D I G+ G + IV
Sbjct: 825 VNFYADESLVTRLPDGIDQIIIGNFFTADAKNAA------IVGQPFGVLIGDKIVRDDAG 878
Query: 93 DILLDTEIATFANEQSTVRV 112
+ ++ + N+ + V +
Sbjct: 879 NKVITASTGAYVNDTNDVPI 898
>gi|330989176|gb|EGH87279.1| type II and III secretion system protein [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 416
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 36 RIAVGQSLILQFDVLPK--QVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+ + Q + + ++ VGD KI DV + + +TG G+T+++V
Sbjct: 42 AVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFL-LTGVAQGTTSLMVWTACAT 100
Query: 94 ILLDTEIATFANEQST 109
+ + ++
Sbjct: 101 APRQSMVFVRGRATAS 116
>gi|255012185|ref|ZP_05284311.1| TraN-like protein [Bacteroides fragilis 3_1_12]
gi|313150028|ref|ZP_07812221.1| predicted protein [Bacteroides fragilis 3_1_12]
gi|313138795|gb|EFR56155.1| predicted protein [Bacteroides fragilis 3_1_12]
Length = 360
Score = 35.4 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 23 ASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEK-EKTVVITGKN-- 79
++Q+ E +S I ++ ++ + + G + V V ++ V IT +
Sbjct: 18 SAQEKKELDSQTIYVSFDKTKHIVLPAQVSDISYGREDYVKVERVDNVPNVVRITAQEED 77
Query: 80 -LGSTNIIVLGHNNDI 94
G+TN+I++ N ++
Sbjct: 78 FSGTTNLIIVCTNGNV 93
>gi|56477528|ref|YP_159117.1| outer membrane channel protein [Aromatoleum aromaticum EbN1]
gi|56313571|emb|CAI08216.1| probable outer membrane channel protein,probably involved in pilus
assembly [Aromatoleum aromaticum EbN1]
Length = 566
Score = 35.4 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 30/110 (27%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDK------------ 60
T R T S + + + I VG+S +++ +V ++++G+
Sbjct: 39 TPRVAVATTNGSPCGRVEIAPMVTIPVGKSSVIRPEVPVTRILLGNPDNAQAARPSAEPA 98
Query: 61 -----------------IVDVLALE-KEKTVVITGKNLGSTNIIVLGHNN 92
+ V L + + GK++GSTN++++ +
Sbjct: 99 KDDKGGQQAKQSDGRPGVAQVDVLLLSPNEIYLLGKSVGSTNVVLVDRSG 148
>gi|239945041|ref|ZP_04696978.1| hypothetical protein SrosN15_28895 [Streptomyces roseosporus NRRL
15998]
gi|239991503|ref|ZP_04712167.1| hypothetical protein SrosN1_29637 [Streptomyces roseosporus NRRL
11379]
Length = 940
Score = 35.4 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 2/80 (2%)
Query: 43 LILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIAT 102
L FD ++VG V + + +TG + G T + LG I D +
Sbjct: 382 RDLAFDESASVLVVGSGTRVAAVDVRDPARPRVTGVSSGVT--VSLGSGTAISGDGTLIA 439
Query: 103 FANEQSTVRVYTPGTLSFLS 122
VRV LS
Sbjct: 440 TGAADDKVRVLRVSGSGELS 459
>gi|295840246|ref|ZP_06827179.1| urease, alpha subunit [Streptomyces sp. SPB74]
gi|295827860|gb|EFG65662.1| urease, alpha subunit [Streptomyces sp. SPB74]
Length = 582
Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
G P A ++ IR ++GQS + D P V+ G ++D + K + G
Sbjct: 47 GGPGRAGEEAVFGGGKVIRESMGQSRASRADGTPDTVVTG-AVVLDHWGIVKADIGIRDG 105
Query: 78 KNLGSTNIIVLGHNNDI 94
+ I+ LG +
Sbjct: 106 R------IVALGKAGNP 116
>gi|291448498|ref|ZP_06587888.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291351445|gb|EFE78349.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 947
Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 2/80 (2%)
Query: 43 LILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIAT 102
L FD ++VG V + + +TG + G T + LG I D +
Sbjct: 389 RDLAFDESASVLVVGSGTRVAAVDVRDPARPRVTGVSSGVT--VSLGSGTAISGDGTLIA 446
Query: 103 FANEQSTVRVYTPGTLSFLS 122
VRV LS
Sbjct: 447 TGAADDKVRVLRVSGSGELS 466
>gi|296158514|ref|ZP_06841344.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
gi|295891082|gb|EFG70870.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
Length = 590
Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+ + G+ IL K++ +G+ K++ ++ ++++ G+ G T+++V
Sbjct: 47 VLEMFRGEVRILHIPGTIKRIAIGNGKLLTANVVD--GSLMLLGEQDGITSLVVWNDKGI 104
Query: 94 ILLDTEIATFANEQST 109
L T + E +
Sbjct: 105 AL-QTTVRIAKAEVNA 119
>gi|320322730|gb|EFW78823.1| type II/III secretion system protein [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330485|gb|EFW86464.1| type II/III secretion system protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 416
Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 36 RIAVGQSLILQFDVLPK--QVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+ + Q + + ++ VGD KI DV + + +TG G+T+++V
Sbjct: 42 AVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFL-LTGVAQGTTSLMVWTACAT 100
Query: 94 ILLDTEIATFANEQST 109
+ + ++
Sbjct: 101 APRQSMVFVRGRATAS 116
>gi|86360299|ref|YP_472187.1| hypothetical protein RHE_PE00021 [Rhizobium etli CFN 42]
gi|86284401|gb|ABC93460.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 205
Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 13/103 (12%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIV------------DV- 64
G P++ ++ E + Q ++ + + +VG++ DV
Sbjct: 87 GQPSSVCKRALERMDAFLEETDDQGRMVSYGRVAAVAVVGNEDGAHHVSAELYQALNDVG 146
Query: 65 LALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQ 107
+ G+ +GSTN + L ++ N
Sbjct: 147 FTIPANAVAYWVGEAMGSTNFVDLDKVPKVVTKAVDMLARNTA 189
>gi|289625312|ref|ZP_06458266.1| type II and III secretion system protein [Pseudomonas syringae
pv. aesculi str. NCPPB3681]
gi|289647837|ref|ZP_06479180.1| type II and III secretion system protein [Pseudomonas syringae
pv. aesculi str. 2250]
gi|330867146|gb|EGH01855.1| type II and III secretion system protein [Pseudomonas syringae
pv. aesculi str. 0893_23]
gi|330871034|gb|EGH05743.1| type II and III secretion system protein [Pseudomonas syringae
pv. aesculi str. 0893_23]
Length = 416
Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 36 RIAVGQSLILQFDVLPK--QVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ + Q + + ++ VGD KI DV + + +TG G+T+++V
Sbjct: 42 AVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFL-LTGVAQGTTSLMV 94
>gi|283778969|ref|YP_003369724.1| type II and III secretion system protein [Pirellula staleyi DSM
6068]
gi|283437422|gb|ADB15864.1| type II and III secretion system protein [Pirellula staleyi DSM
6068]
Length = 684
Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 30 DNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGST--NIIV 87
D N + + +G+ IL F+ PK++ + D+ I + ++ + I G+++GST N+ V
Sbjct: 160 DPENTLEVILGRPRILVFNETPKRIYLPDESIA-AFQVIDDRQISIVGRSVGSTALNLWV 218
Query: 88 LG 89
+
Sbjct: 219 ID 220
>gi|330873797|gb|EGH07946.1| type II/III secretion system protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 384
Score = 35.1 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 37 IAVGQSLILQFDVLPK--QVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDI 94
+ + Q + + ++ VGD KI DV + + +TG G+T+++V
Sbjct: 11 VEIDQGIQQEVRSPVAIPRIAVGDPKIADVHVNGTDGFL-LTGVAQGTTSLMVWTACATA 69
Query: 95 LLDTEIATFANEQST 109
+ + ++
Sbjct: 70 PRQSMVFVRGRATAS 84
>gi|120404061|ref|YP_953890.1| urease subunit alpha [Mycobacterium vanbaalenii PYR-1]
gi|167012777|sp|A1T9N4|URE1_MYCVP RecName: Full=Urease subunit alpha; AltName: Full=Urea
amidohydrolase subunit alpha
gi|119956879|gb|ABM13884.1| urease, Metallo peptidase, MEROPS family M38 [Mycobacterium
vanbaalenii PYR-1]
Length = 573
Score = 35.1 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
T + G P A + +R ++GQS + + D P VI G I+D + K
Sbjct: 33 TEDRSGGPGLAGDEAVFGGGKVLRESMGQSRVTRADGAPDTVITG-AVILDYWGIIKADI 91
Query: 73 VVITGKNLGSTNIIVLGHNNDI 94
+ G+ I +G +
Sbjct: 92 GIRDGR------ITAIGKAGNP 107
>gi|71735124|ref|YP_276550.1| type II/III secretion system protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71555677|gb|AAZ34888.1| bacterial type II/III secretion system protein [Pseudomonas
syringae pv. phaseolicola 1448A]
Length = 416
Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 36 RIAVGQSLILQFDVLPK--QVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+ + Q + + ++ VGD KI DV + + +TG G+T+++V
Sbjct: 42 AVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFL-LTGVAQGTTSLMVWTACAT 100
Query: 94 ILLDTEIATFANEQST 109
+ + ++
Sbjct: 101 APRQSMVFVRGRATTS 116
>gi|113867004|ref|YP_725493.1| flp pilus assembly protein secretin CpaC [Ralstonia eutropha H16]
gi|113525780|emb|CAJ92125.1| flp pilus assembly protein secretin CpaC [Ralstonia eutropha H16]
Length = 478
Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
T + S + P I + G+ L+ ++V +G+ +V ++
Sbjct: 24 TTAARTGAQPPSYELPARF-GAIELFKGEVRALEVPGTIRRVAIGNGALVSSTVVD--GR 80
Query: 73 VVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTV 110
+++ + +G+T++IV L ++ + + V
Sbjct: 81 LLLLAEEIGTTSLIVWNERGVAL-QGKLRVAPADTADV 117
>gi|289675698|ref|ZP_06496588.1| type II and III secretion system protein [Pseudomonas syringae pv.
syringae FF5]
Length = 133
Score = 35.1 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 36 RIAVGQS--LILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+ + Q ++ V ++ VGD KI DV + + +TG G+T+++V
Sbjct: 10 AVEIDQGIQQEVRSVVPITRIAVGDPKIADVHVNGTDGFL-LTGVAQGTTSLMVWTACAS 68
Query: 94 ILLDTEIATFANEQST 109
+ + +T
Sbjct: 69 APRQSMVFVRGRATTT 84
>gi|118618420|ref|YP_906752.1| urease subunit alpha [Mycobacterium ulcerans Agy99]
gi|167012776|sp|A0PSG2|URE1_MYCUA RecName: Full=Urease subunit alpha; AltName: Full=Urea
amidohydrolase subunit alpha
gi|118570530|gb|ABL05281.1| urease alpha subunit UreC [Mycobacterium ulcerans Agy99]
Length = 577
Score = 34.7 bits (78), Expect = 4.4, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 18 GIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITG 77
G P A + +R ++GQ + + + P VI G I+D + K + G
Sbjct: 38 GGPGLAGDEAVFGGGKVLRESMGQGRVTRAEGAPDTVITG-AVIIDYWGIIKANIGIRDG 96
Query: 78 KNLGSTNIIVLGHNNDI 94
+ I+ +G +
Sbjct: 97 R------IVAIGKAGNP 107
>gi|239817412|ref|YP_002946322.1| type II and III secretion system protein [Variovorax paradoxus
S110]
gi|239803989|gb|ACS21056.1| type II and III secretion system protein [Variovorax paradoxus
S110]
Length = 457
Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 13/121 (10%)
Query: 19 IPTTASQKTPEDNSNR--IRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEK-----EK 71
I T A+ TP + + + G L + +++ + D+ + + K
Sbjct: 36 IATNAADATPVRPQPQRPLILNAGTQQELLIEKGIERMAIADEAVAAITVTRKGPNSPAA 95
Query: 72 TVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQ------STVRVYTPGTLSFLSCTP 125
++ITGK G T +++ N I +V + + ++ P
Sbjct: 96 RLIITGKAAGRTTLMIWEKGNSAATTYSIEVRRRSATLAGTMDSVAAHQQARETAMAGMP 155
Query: 126 R 126
Sbjct: 156 E 156
>gi|209886527|ref|YP_002290384.1| Flp pilus assembly protein CpaB [Oligotropha carboxidovorans OM5]
gi|209874723|gb|ACI94519.1| Flp pilus assembly protein CpaB [Oligotropha carboxidovorans OM5]
Length = 272
Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 18/116 (15%)
Query: 25 QKTPEDNSNRI---RIAVGQSLILQFDVLPK-----QVIVGDDKIVDVLALEKEKTVVIT 76
Q+ P+ N + I + +L D + +V+VG +++ + E ++T
Sbjct: 158 QRNPDSNGGEMVSSEIILSDVRVLAIDQTIEEKNGQKVVVGKTATLELKPAQAE---MLT 214
Query: 77 GKNLGSTNIIVLGHNNDILLD---TEIATFANEQSTVRVYTPGTLSFLSCTPRCLP 129
T + L L+D A ++ + VY +CT C
Sbjct: 215 RSRQSGTLTLAL----RSLVDANKQNEVEEATDEKVITVYRGVDREIYNCTSSCKK 266
>gi|330887974|gb|EGH20635.1| type II and III secretion system protein [Pseudomonas syringae pv.
mori str. 301020]
Length = 416
Score = 34.7 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Query: 36 RIAVGQSLILQFDVLPK--QVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+ + Q + + ++ VGD KI DV + + TG G+T+++V
Sbjct: 42 AVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLF-TGVAQGTTSLMVWTACAT 100
Query: 94 ILLDTEIATFANEQST 109
+ + ++
Sbjct: 101 APRQSMVFVRGRATAS 116
>gi|328880881|emb|CCA54120.1| Urease alpha subunit [Streptomyces venezuelae ATCC 10712]
Length = 573
Score = 34.7 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 7/78 (8%)
Query: 17 KGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVIT 76
G P A + IR ++GQ+ + + P VI G I+D + K +
Sbjct: 37 SGGPGRAGDEAVFGGGKVIRESMGQARTTRAEGAPDTVITG-AVIIDHWGVVKADIGIRD 95
Query: 77 GKNLGSTNIIVLGHNNDI 94
G+ I LG +
Sbjct: 96 GR------ITALGKAGNP 107
>gi|209550627|ref|YP_002282544.1| urease subunit alpha [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|254790705|sp|B5ZMP0|URE1_RHILW RecName: Full=Urease subunit alpha; AltName: Full=Urea
amidohydrolase subunit alpha
gi|209536383|gb|ACI56318.1| urease, alpha subunit [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 570
Score = 34.7 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 21 TTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNL 80
TT ++ IR +GQS + + D VI + IVD + K + G+
Sbjct: 38 TTYGEEVKFGGGKVIRDGMGQSQVTRADGAVDTVIT-NAVIVDHSGVYKADIGLKDGR-- 94
Query: 81 GSTNIIVLGHNNDI 94
I+ +G +
Sbjct: 95 ----IVAIGKAGNP 104
>gi|262066308|ref|ZP_06025920.1| outer membrane protein [Fusobacterium periodonticum ATCC 33693]
gi|291380003|gb|EFE87521.1| outer membrane protein [Fusobacterium periodonticum ATCC 33693]
Length = 3512
Score = 34.7 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 46/116 (39%), Gaps = 11/116 (9%)
Query: 6 QREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVL 65
+++I + + GI S T +++I + +S + + + + + +
Sbjct: 1202 KKDITIKAGKSAGILANDSNATNSGTASKIVVKGTESAGISIQTTLDKTVTPNKAVANGE 1261
Query: 66 ALE-KEKTVVI----------TGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTV 110
+ E T+ + GK +T I L ++ I ++++ + N +TV
Sbjct: 1262 KVARNEGTITLESTANKSAAMLGKRAAATPDITLSNDGTINIESKESVGINADNTV 1317
>gi|213968016|ref|ZP_03396162.1| bacterial type II/III secretion system protein [Pseudomonas
syringae pv. tomato T1]
gi|301383668|ref|ZP_07232086.1| bacterial type II/III secretion system protein [Pseudomonas
syringae pv. tomato Max13]
gi|302059963|ref|ZP_07251504.1| bacterial type II/III secretion system protein [Pseudomonas
syringae pv. tomato K40]
gi|302131629|ref|ZP_07257619.1| bacterial type II/III secretion system protein [Pseudomonas
syringae pv. tomato NCPPB 1108]
gi|213927359|gb|EEB60908.1| bacterial type II/III secretion system protein [Pseudomonas
syringae pv. tomato T1]
Length = 419
Score = 34.3 bits (77), Expect = 5.1, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ I G ++ V ++ VGD KI DV + + +TG G+T+++V
Sbjct: 37 AAMPAAMEIDQGIQQNVRSSVAITRIAVGDPKIADVHVNGNDGFL-LTGVAQGTTSLMV 94
>gi|262202658|ref|YP_003273866.1| urease subunit alpha [Gordonia bronchialis DSM 43247]
gi|262086005|gb|ACY21973.1| urease, alpha subunit [Gordonia bronchialis DSM 43247]
Length = 572
Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 13 TVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKT 72
T + G P A + IR ++GQS + D P VI G ++D + K
Sbjct: 33 TEDRSGGPGRAGDEAVFGGGKVIRESMGQSRATRADGAPDTVITG-VVVLDHWGIIKADL 91
Query: 73 VVITGKNLGSTNIIVLGHNNDI 94
+ G+ I+ LG +
Sbjct: 92 GIRDGR------IVALGKAGNP 107
>gi|255020086|ref|ZP_05292157.1| type II and III secretion system protein [Acidithiobacillus
caldus ATCC 51756]
gi|254970448|gb|EET27939.1| type II and III secretion system protein [Acidithiobacillus
caldus ATCC 51756]
Length = 502
Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 19 IPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGK 78
+ + I + GQ ++ K+V +GD K++ + +++ G
Sbjct: 12 VAIAMAIPAQAAEDRTIDLYAGQVRVIP-TKPVKRVAIGDGKVL-STTVVDGNELLLLGD 69
Query: 79 NLGSTNIIVLGHNND 93
G T++ V +
Sbjct: 70 AEGETSLRVWFKDGS 84
>gi|167628269|ref|YP_001678768.1| multidomain protein with s-layer homology region, glug motif, ig
motif, i-set domain [Heliobacterium modesticaldum Ice1]
gi|167591009|gb|ABZ82757.1| multidomain protein with s-layer homology region, glug motif, ig
motif, i-set domain [Heliobacterium modesticaldum Ice1]
Length = 2976
Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 28/100 (28%), Gaps = 4/100 (4%)
Query: 12 ETVRKKGIPTTASQKTPEDNSNRIRIAV----GQSLILQFDVLPKQVIVGDDKIVDVLAL 67
T P TA P + A + D L IV A
Sbjct: 1916 NTAPPANNPPTAKNPVPTQSVTAGGTATFTASDIAEDTDNDPLTITAIVTGPDTAKATAS 1975
Query: 68 EKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQ 107
TV +TG G T+++V ++ D +
Sbjct: 1976 LNSGTVTLTGVAAGDTSVVVTVYDGTDTADVTVPVSVTAA 2015
>gi|271963123|ref|YP_003337319.1| ROK protein [Streptosporangium roseum DSM 43021]
gi|270506298|gb|ACZ84576.1| ROK protein [Streptosporangium roseum DSM 43021]
Length = 387
Score = 34.3 bits (77), Expect = 6.1, Method: Composition-based stats.
Identities = 10/84 (11%), Positives = 26/84 (30%), Gaps = 7/84 (8%)
Query: 32 SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91
++ I VG ++ + V I D ++ + G+ G ++
Sbjct: 142 ADIWAITVGTVGVVDLEGRVTTVY----AIADWAGVDLAGHL---GRTFGQPVLVANDSK 194
Query: 92 NDILLDTEIATFANEQSTVRVYTP 115
L + + + V ++
Sbjct: 195 LAALAEQRLGVAREVRDLVYLHAG 218
>gi|330947449|gb|EGH48078.1| type II and III secretion system protein [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 134
Score = 34.3 bits (77), Expect = 6.5, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 36 RIAVGQS--LILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+ + Q ++ V ++ VGD KI DV + + +TG G+T+++V
Sbjct: 7 AVEIDQGIQQEVRSAVPITRIAVGDPKIADVHVNGTDGFL-LTGVAQGTTSLMVWTACAS 65
Query: 94 ILLDTEIATFANEQ 107
+ +
Sbjct: 66 APRQSMVFVRGRAT 79
>gi|325289184|ref|YP_004265365.1| S-layer domain-containing protein [Syntrophobotulus glycolicus DSM
8271]
gi|324964585|gb|ADY55364.1| S-layer domain-containing protein [Syntrophobotulus glycolicus DSM
8271]
Length = 1618
Score = 33.9 bits (76), Expect = 6.7, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 21 TTASQKTPEDNSNRIRIAVGQ--SLILQFDVLPK-----QVIVGDDKIVDVLA--LEKEK 71
T A +TP ++N + + G S + + V + I V +
Sbjct: 980 TVAEPRTPSVSANTLTVNKGATASFTVSLGQGVSAATAADITVANGSIASVSTGRVTASG 1039
Query: 72 TVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQS 108
TV +TG G+T IIV H++ + IA N S
Sbjct: 1040 TVTVTGLAAGTTGIIVTFHDSAQTV-KNIAVTVNAVS 1075
>gi|159035834|ref|YP_001535087.1| hypothetical protein Sare_0161 [Salinispora arenicola CNS-205]
gi|157914669|gb|ABV96096.1| conserved hypothetical protein [Salinispora arenicola CNS-205]
Length = 670
Score = 33.9 bits (76), Expect = 6.8, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 5 RQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDV 64
R++E +E G P+TA+ P + + I+ ++ GD + D
Sbjct: 330 RRKENDDEADEADGPPSTATGAVPVARGGYGGLD-DHTRIVNPTAAAPTMVGGDPSLADA 388
Query: 65 LAL 67
+
Sbjct: 389 PTM 391
>gi|28871966|ref|NP_794585.1| type II/III secretion system protein [Pseudomonas syringae pv.
tomato str. DC3000]
gi|28855219|gb|AAO58280.1| bacterial type II/III secretion system protein [Pseudomonas
syringae pv. tomato str. DC3000]
gi|331014708|gb|EGH94764.1| bacterial type II/III secretion system protein [Pseudomonas
syringae pv. lachrymans str. M302278PT]
Length = 419
Score = 33.9 bits (76), Expect = 6.9, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 29 EDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIV 87
+ I G ++ V ++ VGD KI DV + + +TG G+T+++V
Sbjct: 37 AAMPAAMEIDQGIQQNVRSSVAITRIAVGDPKIADVHVNGSDGFL-LTGVAQGTTSLMV 94
>gi|307726635|ref|YP_003909848.1| type II and III secretion system protein [Burkholderia sp.
CCGE1003]
gi|307587160|gb|ADN60557.1| type II and III secretion system protein [Burkholderia sp.
CCGE1003]
Length = 642
Score = 33.9 bits (76), Expect = 7.4, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 34 RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNND 93
+ + G+ IL K++ +G+ K++ ++ +++ G+ G T+++V
Sbjct: 50 VLEMFRGEVRILHVPGTIKRIAIGNGKLITANVVDGN--LMLLGEQDGMTSLVVWNEKGI 107
Query: 94 ILLDTEIATFANEQST 109
L T + +E +
Sbjct: 108 AL-QTTVRIAKSEVNA 122
>gi|167588516|ref|ZP_02380904.1| UspA domain protein [Burkholderia ubonensis Bu]
Length = 167
Score = 33.9 bits (76), Expect = 8.1, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 12/104 (11%)
Query: 28 PEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLAL--EKEKTVVITGKNLGSTNI 85
+R+ + + + + G +I +V + ++I + G+ ++
Sbjct: 58 DAFREEGLRVTDDAAQ-----RMAARGVSGTPQIANVEPAGEDVADRILIVARETGA-DL 111
Query: 86 IVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSFLSCTPRCLP 129
IV+G + + E RV T L RC P
Sbjct: 112 IVMGTHGRRGFRRLVLGSVAE----RVLRGATRPVLMIPARCAP 151
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.302 0.133 0.354
Lambda K H
0.267 0.0414 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,152,041,073
Number of Sequences: 14124377
Number of extensions: 73139747
Number of successful extensions: 239640
Number of sequences better than 10.0: 660
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 500
Number of HSP's that attempted gapping in prelim test: 238774
Number of HSP's gapped (non-prelim): 924
length of query: 135
length of database: 4,842,793,630
effective HSP length: 100
effective length of query: 35
effective length of database: 3,430,355,930
effective search space: 120062457550
effective search space used: 120062457550
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.8 bits)
S2: 75 (33.5 bits)