BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764483|ref|YP_003065151.2| hypothetical protein
CLIBASIA_03125 [Candidatus Liberibacter asiaticus str. psy62]
         (135 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764483|ref|YP_003065151.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 135

 Score =  274 bits (700), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MHRKRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDK 60
           MHRKRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDK
Sbjct: 1   MHRKRQREIKNETVRKKGIPTTASQKTPEDNSNRIRIAVGQSLILQFDVLPKQVIVGDDK 60

Query: 61  IVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF 120
           IVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF
Sbjct: 61  IVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVYTPGTLSF 120

Query: 121 LSCTPRCLPSSPPVR 135
           LSCTPRCLPSSPPVR
Sbjct: 121 LSCTPRCLPSSPPVR 135


>gi|254780727|ref|YP_003065140.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 474

 Score = 41.6 bits (96), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 7/74 (9%)

Query: 34  RIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGH--- 90
           +I I + + +ILQ  V  + V+V D    DV+ +   +T+ + GKN+G  N+I++GH   
Sbjct: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDGK 107

Query: 91  ---NNDILLDTEIA 101
              N DIL++ +IA
Sbjct: 108 QMLNLDILIERDIA 121


>gi|254780655|ref|YP_003065068.1| transketolase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 673

 Score = 23.5 bits (49), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 54  VIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDILLDTEIATFANEQSTVRVY 113
           V+VGD  +++ ++ E     +    +LG + +IVL  NN I +D  I+   +     R  
Sbjct: 164 VLVGDGCLMEGISQE----AISFAGHLGLSKLIVLWDNNGISIDGPISLADSTDQYARFR 219

Query: 114 TPG--TLS 119
             G  TLS
Sbjct: 220 ASGWNTLS 227


>gi|254780892|ref|YP_003065305.1| probable two-component response regulator protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 133

 Score = 23.5 bits (49), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 13/52 (25%), Positives = 26/52 (50%)

Query: 44  ILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHNNDIL 95
           +L+F    +Q+ +G D  V  L +E +   +I G   G+ + ++   N + L
Sbjct: 59  VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETL 110


>gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str.
            psy62]
          Length = 1576

 Score = 22.3 bits (46), Expect = 3.1,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 13/15 (86%)

Query: 59   DKIVDVLALEKEKTV 73
            D++ D+L++EKE TV
Sbjct: 1545 DQVFDILSVEKEVTV 1559


>gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 443

 Score = 21.6 bits (44), Expect = 5.5,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 15 RKKGIPTTASQKTPEDNSNRIRIA 38
          ++ GIPT A   T +  +  +R+A
Sbjct: 22 KELGIPTVAVHSTADSGAMHVRLA 45


>gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 626

 Score = 21.2 bits (43), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 9/15 (60%), Positives = 13/15 (86%)

Query: 71  KTVVITGKNLGSTNI 85
           K++V+T KNL ST+I
Sbjct: 479 KSLVLTSKNLSSTSI 493


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.133    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,308
Number of Sequences: 1233
Number of extensions: 3266
Number of successful extensions: 14
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of query: 135
length of database: 328,796
effective HSP length: 65
effective length of query: 70
effective length of database: 248,651
effective search space: 17405570
effective search space used: 17405570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)