Query gi|255764484|ref|YP_003065144.2| hypothetical protein CLIBASIA_03090 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 43
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 06:47:09 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764484.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v2za_ a.186.1.1 (A:) Circadi 16.7 21 0.0015 15.6 1.0 17 25-41 43-59 (106)
2 d1r5qa_ a.186.1.1 (A:) Circadi 15.8 22 0.0016 15.5 0.9 17 25-41 33-49 (98)
3 d1r8ja1 a.186.1.1 (A:177-282) 14.8 24 0.0018 15.3 0.9 17 25-41 40-56 (106)
4 d1ppjj_ f.23.14.1 (J:) Subunit 9.3 35 0.0026 14.4 0.3 10 20-29 21-30 (33)
5 d1jb0b_ f.29.1.1 (B:) Apoprote 8.8 66 0.0048 13.0 3.4 21 4-24 41-61 (739)
6 d1jb0a_ f.29.1.1 (A:) Apoprote 7.3 79 0.0058 12.6 3.4 21 4-24 56-76 (743)
7 d1zq7a1 d.309.1.1 (A:1-199) Hy 6.8 84 0.0061 12.5 1.8 17 21-37 70-86 (199)
8 d1ijda_ f.3.1.1 (A:) Light-har 4.1 1.3E+02 0.0092 11.6 2.5 20 7-26 17-36 (46)
9 d6paxa2 a.4.1.5 (A:69-133) Pax 3.3 1.3E+02 0.0095 11.5 0.2 12 19-31 26-37 (65)
10 d2pstx1 d.100.2.1 (X:8-68) Unc 3.3 1E+02 0.0076 12.0 -0.3 13 22-34 48-60 (61)
No 1
>d1v2za_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal domain {Thermosynechococcus elongatus bp-1 [TaxId: 197221]}
Probab=16.74 E-value=21 Score=15.58 Aligned_cols=17 Identities=41% Similarity=0.565 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHCCHHH
Q ss_conf 65776999985432564
Q gi|255764484|r 25 IREKSISAFFRDIPIAL 41 (43)
Q Consensus 25 ireksisaffrdipial 41 (43)
|.+---.|||-|||+.-
T Consensus 43 id~fVn~aFfadi~v~~ 59 (106)
T d1v2za_ 43 IDEFVSKAFFADISVSQ 59 (106)
T ss_dssp HHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHCCCCHHH
T ss_conf 99999999971774889
No 2
>d1r5qa_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal domain {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]}
Probab=15.77 E-value=22 Score=15.49 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHCCHHH
Q ss_conf 65776999985432564
Q gi|255764484|r 25 IREKSISAFFRDIPIAL 41 (43)
Q Consensus 25 ireksisaffrdipial 41 (43)
|.+---.|||-|||+.-
T Consensus 33 id~fVn~aFfadi~v~~ 49 (98)
T d1r5qa_ 33 IDKFINAVFCANIPVPE 49 (98)
T ss_dssp HHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHCCCCHHH
T ss_conf 99999999971774889
No 3
>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA, C-terminal domain {Synechococcus elongatus PCC 7942 [TaxId: 1140]}
Probab=14.84 E-value=24 Score=15.28 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHCCHHH
Q ss_conf 65776999985432564
Q gi|255764484|r 25 IREKSISAFFRDIPIAL 41 (43)
Q Consensus 25 ireksisaffrdipial 41 (43)
|.+---.|||-|||+.-
T Consensus 40 id~fVn~aFfadi~v~~ 56 (106)
T d1r8ja1 40 IDNFVNMAFFADVPVTK 56 (106)
T ss_dssp HHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHCCCCHHH
T ss_conf 99999999971774889
No 4
>d1ppjj_ f.23.14.1 (J:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.33 E-value=35 Score=14.44 Aligned_cols=10 Identities=40% Similarity=0.776 Sum_probs=7.2
Q ss_pred HHHHHHHHHH
Q ss_conf 9986665776
Q gi|255764484|r 20 FLWADIREKS 29 (43)
Q Consensus 20 flwadireks 29 (43)
-+|-||+.|-
T Consensus 21 klWKdIkhkY 30 (33)
T d1ppjj_ 21 KLWKHIKHKY 30 (33)
T ss_dssp TSHHHHGGGT
T ss_pred CHHHHHHHHH
T ss_conf 1078899886
No 5
>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus [TaxId: 32046]}
Probab=8.83 E-value=66 Score=13.02 Aligned_cols=21 Identities=43% Similarity=0.841 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999865899999999866
Q gi|255764484|r 4 LIEILLLSSFAVIAIIFLWAD 24 (43)
Q Consensus 4 lieilllssfaviaiiflwad 24 (43)
+-.-...+.|+-++|||+|..
T Consensus 41 l~rKIFssHFGhLaiIflWlS 61 (739)
T d1jb0b_ 41 LYQKIFASHFGHLAIIFLWVS 61 (739)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999874247899999971
No 6
>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus [TaxId: 32046]}
Probab=7.26 E-value=79 Score=12.63 Aligned_cols=21 Identities=19% Similarity=0.684 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999865899999999866
Q gi|255764484|r 4 LIEILLLSSFAVIAIIFLWAD 24 (43)
Q Consensus 4 lieilllssfaviaiiflwad 24 (43)
+-.-+..|.|+-++|||+|..
T Consensus 56 l~~KiFssHfghLaiIflW~s 76 (743)
T d1jb0a_ 56 ISRKIFSAHFGHLAVVFIWLS 76 (743)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999863258999999970
No 7
>d1zq7a1 d.309.1.1 (A:1-199) Hypothetical protein MM0484 {Methanosarcina mazei [TaxId: 2209]}
Probab=6.80 E-value=84 Score=12.51 Aligned_cols=17 Identities=41% Similarity=0.331 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 98666577699998543
Q gi|255764484|r 21 LWADIREKSISAFFRDI 37 (43)
Q Consensus 21 lwadireksisaffrdi 37 (43)
|+.+|.+.+++|-|+|-
T Consensus 70 L~~~v~~~A~~AA~~Dp 86 (199)
T d1zq7a1 70 LKEAILDSAISAATRDP 86 (199)
T ss_dssp HHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHCCC
T ss_conf 99999999999984899
No 8
>d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=4.14 E-value=1.3e+02 Score=11.58 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99986589999999986665
Q gi|255764484|r 7 ILLLSSFAVIAIIFLWADIR 26 (43)
Q Consensus 7 illlssfaviaiiflwadir 26 (43)
-|+|.|-|++++..-.|-..
T Consensus 17 Pl~LgsVav~s~~VH~avl~ 36 (46)
T d1ijda_ 17 PLMLGAVAITALLVHAAVLT 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 26999999999999999980
No 9
>d6paxa2 a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.31 E-value=1.3e+02 Score=11.52 Aligned_cols=12 Identities=50% Similarity=1.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9998666577699
Q gi|255764484|r 19 IFLWADIREKSIS 31 (43)
Q Consensus 19 iflwadireksis 31 (43)
||-| .||++-+.
T Consensus 26 iFaW-EIRd~Li~ 37 (65)
T d6paxa2 26 IFAW-EIRDRLLS 37 (65)
T ss_dssp CCHH-HHHHHHHH
T ss_pred CCHH-HHHHHHHH
T ss_conf 0259-99999998
No 10
>d2pstx1 d.100.2.1 (X:8-68) Uncharacterized protein PA2412 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.28 E-value=1e+02 Score=12.01 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8666577699998
Q gi|255764484|r 22 WADIREKSISAFF 34 (43)
Q Consensus 22 wadireksisaff 34 (43)
|.|+|-+|.-...
T Consensus 48 WtDmrP~SLr~~m 60 (61)
T d2pstx1 48 WTDMRPLSLRQHM 60 (61)
T ss_dssp CCCCSCHHHHHHH
T ss_pred HCCCCCHHHHHHH
T ss_conf 4668837999863
Done!