RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|255764484|ref|YP_003065144.2| hypothetical protein
CLIBASIA_03090 [Candidatus Liberibacter asiaticus str. psy62]
         (43 letters)



>gnl|CDD|32929 COG3115, ZipA, Cell division protein [Cell division and
          chromosome partitioning].
          Length = 324

 Score = 28.5 bits (63), Expect = 0.38
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 5/41 (12%)

Query: 1  MQRLIEILLL-SSFAVIAIIF--LWADIREKSISAFFRDIP 38
          MQ L  IL++  + A+IA++   LW   +E+S  ++FRD P
Sbjct: 1  MQDLRLILIIVGAIAIIALLVHGLWTSRKERS--SYFRDRP 39


>gnl|CDD|176995 CHL00054, psaB, photosystem I P700 chlorophyll a apoprotein A2.
          Length = 734

 Score = 24.3 bits (53), Expect = 6.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 2  QRLIEILLLSSFAVIAIIFLW 22
          +RL + +  S F  +AIIFLW
Sbjct: 40 ERLYQKIFASHFGQLAIIFLW 60


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.338    0.148    0.417 

Gapped
Lambda     K      H
   0.267   0.0789    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 523,182
Number of extensions: 16862
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 11
Length of query: 43
Length of database: 6,263,737
Length adjustment: 17
Effective length of query: 26
Effective length of database: 5,896,384
Effective search space: 153305984
Effective search space used: 153305984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 51 (23.3 bits)