RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|255764484|ref|YP_003065144.2| hypothetical protein
CLIBASIA_03090 [Candidatus Liberibacter asiaticus str. psy62]
         (43 letters)



>gnl|CDD|183889 PRK13199, psaB, photosystem I P700 chlorophyll a apoprotein A2;
          Provisional.
          Length = 742

 Score = 24.7 bits (54), Expect = 5.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 2  QRLIEILLLSSFAVIAIIFLWA 23
          + L + +  + F  +AIIFLW 
Sbjct: 40 ENLYQKIFATHFGHLAIIFLWV 61


>gnl|CDD|130403 TIGR01336, psaB, photosystem I core protein PsaB.  The core
          proteins of photosystem I are PsaA and PsaB, homologous
          integral membrane proteins that form a heterodimer. The
          heterodimer binds the electron-donating chlorophyll
          dimer P700, as well as chlorophyll, phylloquinone, and
          4FE-4S electron acceptors. This model describes PsaB
          only.
          Length = 734

 Score = 24.5 bits (53), Expect = 5.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 2  QRLIEILLLSSFAVIAIIFLWA 23
          + L + +  S F  +AIIFLW 
Sbjct: 39 ENLYQKIFASHFGHLAIIFLWT 60


>gnl|CDD|166673 PLN03032, PLN03032, serine decarboxylase; Provisional.
          Length = 374

 Score = 24.4 bits (53), Expect = 6.5
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 17  AIIFLWADIREKSISAFFRDI 37
           A ++LW  +R K      RD+
Sbjct: 277 APLYLWYTLRRKGYRGIKRDV 297


>gnl|CDD|181878 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.
          Length = 777

 Score = 24.0 bits (53), Expect = 8.5
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 7  ILLLSSFAVIAIIFLWADIREKSISA 32
          + LL   A+I +      +R   ISA
Sbjct: 4  LWLLVPLAIILLPLNLPPLRRSLISA 29


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.338    0.148    0.417 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 722,865
Number of extensions: 27980
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 18
Length of query: 43
Length of database: 5,994,473
Length adjustment: 17
Effective length of query: 26
Effective length of database: 5,627,137
Effective search space: 146305562
Effective search space used: 146305562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 50 (23.2 bits)