HHsearch alignment for GI: 255764485 and conserved domain: COG5461
>COG5461 Type IV pili component [Cell motility and secretion].
Probab=100.00 E-value=0 Score=429.53 Aligned_cols=179 Identities=44% Similarity=0.742 Sum_probs=175.4
Q ss_pred CCCCHHHCCCEEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 78871113857773377269885156676889888899999999997418872999924989887899999999999999
Q gi|255764485|r 64 EGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIII 143 (243)
Q Consensus 64 ~~~DYR~RHPIvi~Ea~~tlDIpVg~g~g~Lt~~qr~~V~gFa~~yrr~G~G~i~I~vPsGS~Na~AA~~~~~eIR~~L~ 143 (243)
T Consensus 34 ipddyrt~hpI~i~e~~~~~dipi~~gds~Lt~sqrd~lrgf~~~y~s~~a~~l~i~ip~gs~n~~tA~~m~~eir~~l~ 113 (224)
T COG5461 34 IPDDYRTRHPIVIREVEPEIDIPILKGDSGLTASQRDRLRGFLDRYSSASADALHIQIPSGSANEVTASRMAKEIRRLLA 113 (224)
T ss_pred CCCCCCCCCCEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 65323578876864257776602324765443558899999998764325771699815898425778999999999998
Q ss_pred HCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCC
Q ss_conf 75988234066103688854368466775444541788899813314675578862333625688789862696885068
Q gi|255764485|r 144 SSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSP 223 (243)
Q Consensus 144 ~~GVp~~~I~v~~Y~a~~p~~aAPIRLSY~ri~A~ag~CG~WPeDL~~s~~~Nk~y~NFGCAtQ~NLAAqVaNP~DLv~P 223 (243)
T Consensus 114 ~~Gv~~~ri~~~~y~a~~~~d~apIRvsyVa~~A~t~~Cg~wpedl-~~T~dN~~y~nfGCa~q~NLAAqvaNP~DLlgp 192 (224)
T COG5461 114 GSGVDRARIRVVNYDASSQEDGAPIRVSYVAYTARTPKCGQWPEDL-LNTRDNKNYYNFGCATQSNLAAQVANPRDLLGP 192 (224)
T ss_pred HCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCHHHH-HHHHHCCCCCCCCCHHHHHHHHHHCCHHHHCCC
T ss_conf 6488846058997334666788635899999970188766567777-643411443355505566699874798774585
Q ss_pred CCCCCCCHHHHHHHHHHHCC
Q ss_conf 88884436678889987519
Q gi|255764485|r 224 RMVTPPDAEQRDKSIQRYRQ 243 (243)
Q Consensus 224 R~~tP~Da~RR~~viekYR~ 243 (243)
T Consensus 193 R~mtPiDaerr~~vidtYR~ 212 (224)
T COG5461 193 RAMTPIDAERRAIVIDTYRR 212 (224)
T ss_pred CCCCCCCCCCCCCEEEEEEC
T ss_conf 45885641024522222322