HHsearch alignment for GI: 255764485 and conserved domain: TIGR02522
>TIGR02522 pilus_cpaD pilus (Caulobacter type) biogenesis lipoprotein CpaD; InterPro: IPR013361 Proteins in this entry consist of a pilus biogenesis protein, CpaD, from Caulobacter, and homologues in other bacteria, including three in the root nodule bacterium Bradyrhizobium japonicum. The molecular function of the homologues is not known..
Probab=100.00 E-value=0 Score=414.13 Aligned_cols=200 Identities=36% Similarity=0.600 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHCCC--EEEECCCCCHHHCCCEEEEECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 999999999960220--011027887111385777337726988515667688988889999999999741887299992
Q gi|255764485|r 44 LGQLFFLLLFYGTSA--LAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLI 121 (243)
Q Consensus 44 ~~~~~~~~~~~~~~~--~~~~~~~~DYR~RHPIvi~Ea~~tlDIpVg~g~g~Lt~~qr~~V~gFa~~yrr~G~G~i~I~v 121 (243)
T Consensus 4 ~~a~~~~LagC~~~~P~~~~~~~p~d~~~~~PI~v~~~~~~~~l~v~~~~~Gl~a~~~~~l~~~l~~~~~~~~~~l~~~~ 83 (211)
T TIGR02522 4 LLALTALLAGCASTDPEIDVGALPDDYRQRHPIAVQEESKSIDLLVAPGDRGLSASQQDQLLGFLKDWSRASAQTLVVVI 83 (211)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 98899997530588875553432345345887355117701345544888767988899999999998630585378975
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEEECCCCCCCCHHHCCCCCC-----C
Q ss_conf 49898878999999999999997598823406610368885436846677544454178889981331467557-----8
Q gi|255764485|r 122 PSPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKG-----N 196 (243)
Q Consensus 122 PsGS~Na~AA~~~~~eIR~~L~~~GVp~~~I~v~~Y~a~~p~~aAPIRLSY~ri~A~ag~CG~WPeDL~~s~~~-----N 196 (243)
T Consensus 84 p~GSaN~~aa~~~~~e~~~~l~~~Gv~a~~iV~~~~~~~~~~~~g~iRv~~~~~~A~t~~Cg~~~e~l~~~~~~~GyneN 163 (211)
T TIGR02522 84 PSGSANEAAAEAMAAEIRRVLAASGVGARNIVKVVYRAEASGDEGPIRVSYVAIEAQTTKCGSWPEDLLLETLEDGYNEN 163 (211)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHEEEECCCCCCCCCCCCEEEEEEEEEEECCCCCCCCHHHHCCCCCCCCCCC
T ss_conf 88875468899999999999996599720417744557887766655799999887668888885454035678762245
Q ss_pred CCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 86233362568878986269688506888884436678889987519
Q gi|255764485|r 197 RNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243 (243)
Q Consensus 197 k~y~NFGCAtQ~NLAAqVaNP~DLv~PR~~tP~Da~RR~~viekYR~ 243 (243)
T Consensus 164 ~~Y~~~GCa~q~NLAa~ianP~DL~~pR~~~p~D~~~r~~~~~~YR~ 210 (211)
T TIGR02522 164 EAYQNLGCATQNNLAAQIANPRDLLGPRAMTPADGERRDIVIDRYRK 210 (211)
T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHCCCCCCCCCC
T ss_conf 44455013678889984038433312667785365452760112358