Query gi|255764485|ref|YP_003065139.2| hypothetical protein CLIBASIA_03065 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 243 No_of_seqs 50 out of 52 Neff 3.1 Searched_HMMs 23785 Date Tue May 31 15:56:28 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764485.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2hqs_H Peptidoglycan-associate 93.6 0.39 1.6E-05 26.8 8.1 80 84-163 7-91 (118) 2 2aiz_P Outer membrane protein 93.6 0.42 1.8E-05 26.6 8.3 81 83-163 30-115 (134) 3 2zf8_A MOTY, component of sodi 88.4 1.4 5.8E-05 23.1 9.2 82 80-162 159-247 (278) 4 3ldt_A Outer membrane protein, 88.4 1.4 5.8E-05 23.1 8.6 79 85-163 56-139 (169) 5 1r1m_A Outer membrane protein 83.2 2.5 0.0001 21.4 7.4 80 84-163 16-100 (164) 6 2k1s_A Inner membrane lipoprot 82.1 2.7 0.00011 21.2 11.2 79 85-163 36-119 (149) 7 2kgw_A Outer membrane protein 80.2 3.1 0.00013 20.7 9.3 80 84-163 25-109 (129) 8 1uaa_A REP helicase, protein ( 79.8 3.2 0.00014 20.6 6.2 28 129-156 322-349 (673) 9 3khn_A MOTB protein, putative; 72.5 5 0.00021 19.3 10.9 80 84-163 52-141 (174) 10 3oon_A Outer membrane protein 66.1 6.7 0.00028 18.5 10.6 81 82-162 16-102 (123) 11 1pjr_A PCRA; DNA repair, DNA r 61.4 8.1 0.00034 17.9 7.0 25 130-154 332-356 (724) 12 1x3a_A Synapse associated prot 42.9 12 0.00051 16.7 2.4 32 18-49 55-92 (100) 13 2gpj_A Siderophore-interacting 35.5 21 0.00086 15.2 3.6 26 132-157 200-226 (252) 14 2is6_A DNA helicase II; hydrol 31.1 24 0.001 14.7 5.7 13 137-149 362-374 (680) 15 2pw0_A PRPF methylaconitate is 29.4 26 0.0011 14.5 2.3 32 159-190 168-201 (397) 16 1tvc_A Methane monooxygenase c 22.2 34 0.0015 13.7 3.8 25 135-159 222-246 (250) 17 2veq_A Centromere DNA-binding 21.1 36 0.0015 13.5 2.7 80 36-148 361-456 (565) 18 2ax3_A Hypothetical protein TM 21.0 36 0.0015 13.5 1.9 48 76-126 118-165 (502) 19 1yj7_A ESCJ; mixed alpha/beta, 20.8 37 0.0015 13.5 3.2 45 112-160 121-167 (171) No 1 >2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein/lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A Probab=93.65 E-value=0.39 Score=26.85 Aligned_cols=80 Identities=9% Similarity=0.064 Sum_probs=62.0 Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC---CCC--CCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC Q ss_conf 885156676889888899999999997418872999924---989--887899999999999999759882340661036 Q gi|255764485|r 84 DIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIP---SPT--VSSASIRRAVKDIRKIIISSGIPVSSISERIYD 158 (243) Q Consensus 84 DIpVg~g~g~Lt~~qr~~V~gFa~~yrr~G~G~i~I~vP---sGS--~Na~AA~~~~~eIR~~L~~~GVp~~~I~v~~Y~ 158 (243) .|++..+.-.|++.....+..++..-.....-.|.|.-= .|+ .|-.-+..=+..|+..|...||++..|.+..|- T Consensus 7 ~VyF~~~s~~l~~~~~~~L~~ia~~L~~~p~~~i~I~GhtD~~g~~~~N~~LS~~RA~~V~~~L~~~Gi~~~rI~~~g~G 86 (118) T 2hqs_H 7 IVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYG 86 (118) T ss_dssp EEECCTTCCCCCGGGHHHHHHHHHHHHHCTTCCEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECT T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC T ss_conf 99940897607998999999999999778991999999728998765667799999999999999849980469999974 Q ss_pred CCCCC Q ss_conf 88854 Q gi|255764485|r 159 ADYGM 163 (243) Q Consensus 159 a~~p~ 163 (243) ...|. T Consensus 87 ~~~p~ 91 (118) T 2hqs_H 87 KEKPA 91 (118) T ss_dssp TSSCS T ss_pred CCCCC T ss_conf 65777 No 2 >2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1 Probab=93.64 E-value=0.42 Score=26.62 Aligned_cols=81 Identities=7% Similarity=0.058 Sum_probs=64.3 Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC-----CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECC Q ss_conf 988515667688988889999999999741887299992498-----988789999999999999975988234066103 Q gi|255764485|r 83 VDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSP-----TVSSASIRRAVKDIRKIIISSGIPVSSISERIY 157 (243) Q Consensus 83 lDIpVg~g~g~Lt~~qr~~V~gFa~~yrr~G~G~i~I~vPsG-----S~Na~AA~~~~~eIR~~L~~~GVp~~~I~v~~Y 157 (243) -.|++..+.-.|++.....+..+++.-.....-.|.|.-=+. ..|-.-...=+..|+..|...||++..|.+..| T Consensus 30 ~~i~F~~~s~~L~~~~~~~L~~ia~~l~~~~~~~i~I~GhtD~~g~~~~N~~LS~~RA~~V~~~L~~~Gi~~~rI~~~g~ 109 (134) T 2aiz_P 30 NTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTVSY 109 (134) T ss_dssp CEEECCTTCCCCCHHHHHHHHHHHHHHHHSTTCCEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEC T ss_pred CEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEE T ss_conf 70780699700599999999999999996899389999861686872327347999999999999974985137988880 Q ss_pred CCCCCC Q ss_conf 688854 Q gi|255764485|r 158 DADYGM 163 (243) Q Consensus 158 ~a~~p~ 163 (243) -.+.|. T Consensus 110 G~~~P~ 115 (134) T 2aiz_P 110 GEEKPA 115 (134) T ss_dssp TTTSCS T ss_pred CCCCCC T ss_conf 564767 No 3 >2zf8_A MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus} Probab=88.43 E-value=1.4 Score=23.13 Aligned_cols=82 Identities=11% Similarity=0.171 Sum_probs=61.2 Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCC--EEEEE-----ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCE Q ss_conf 726988515667688988889999999999741887--29999-----24989887899999999999999759882340 Q gi|255764485|r 80 EQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSAS--VLFLL-----IPSPTVSSASIRRAVKDIRKIIISSGIPVSSI 152 (243) Q Consensus 80 ~~tlDIpVg~g~g~Lt~~qr~~V~gFa~~yrr~G~G--~i~I~-----vPsGS~Na~AA~~~~~eIR~~L~~~GVp~~~I 152 (243) -+...|.+..+.-.|+...+..+..++. |.+.-.. .|.|. ..+-..|-.-..+=+..|++.|...||+...| T Consensus 159 i~~t~v~F~~gs~~L~~~~~~~L~~ia~-~Lk~~p~~~~I~I~GhTD~~G~~~~N~~LS~~RA~~V~~~L~~~GI~~~rI 237 (278) T 2zf8_A 159 IAFTILHYERQGDQLTKASKKRLSQIAD-YIRHNQDIDLVLVATYTDSTDGKSASQSLSERRAESLRDYFQSLGLPEDRI 237 (278) T ss_dssp SEEEECBSSSSSSSBCHHHHHHHHHHHH-HHTTCCSCCEEEEEEC-------CCCHHHHHHHHHHHHHHHHHHSCCTTSE T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHH-HHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHE T ss_conf 1227798489973279999999999999-998689965799998828999768889999999999999999859997999 Q ss_pred EEECCCCCCC Q ss_conf 6610368885 Q gi|255764485|r 153 SERIYDADYG 162 (243) Q Consensus 153 ~v~~Y~a~~p 162 (243) .+..|-...| T Consensus 238 ~v~g~Ge~~P 247 (278) T 2zf8_A 238 QVQGYGKRRP 247 (278) T ss_dssp ECCEEC---- T ss_pred EEEEECCCCC T ss_conf 9999756577 No 4 >3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila} Probab=88.37 E-value=1.4 Score=23.11 Aligned_cols=79 Identities=6% Similarity=0.063 Sum_probs=61.6 Q ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC-----CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC Q ss_conf 85156676889888899999999997418872999924-----9898878999999999999997598823406610368 Q gi|255764485|r 85 IPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIP-----SPTVSSASIRRAVKDIRKIIISSGIPVSSISERIYDA 159 (243) Q Consensus 85 IpVg~g~g~Lt~~qr~~V~gFa~~yrr~G~G~i~I~vP-----sGS~Na~AA~~~~~eIR~~L~~~GVp~~~I~v~~Y~a 159 (243) |++..+.-.|++..+..+..++.--.....-.|+|.-- +...|-.-..+=+..|++.|...||++..|.+..|-. T Consensus 56 v~F~~~s~~l~~~~~~~L~~ia~~L~~~p~~~i~I~GhTD~~g~~~~N~~LS~~RA~~V~~~L~~~Gv~~~ri~~~G~G~ 135 (169) T 3ldt_A 56 KYFMFSSPRLNEICYPGLNNVIRLLNFYPQSTIYVAGFTDNVGSRSHKRKLSQAQAETMMTFLWANGIAAKRLKAEGYGD 135 (169) T ss_dssp TCCC-CCHHHHHHHCHHHHHHHHHHTTCTTSCEEEEEECTTSCCC--CHHHHHHHHHHHHHHHHHTTCCTTTEEECCTTC T ss_pred CEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECC T ss_conf 34729964269889999999999999789957999997389897667577999999999999998599979989999756 Q ss_pred CCCC Q ss_conf 8854 Q gi|255764485|r 160 DYGM 163 (243) Q Consensus 160 ~~p~ 163 (243) +.|- T Consensus 136 ~~Pv 139 (169) T 3ldt_A 136 KNAI 139 (169) T ss_dssp TTSC T ss_pred CCCC T ss_conf 6867 No 5 >1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} SCOP: d.79.7.1 Probab=83.22 E-value=2.5 Score=21.42 Aligned_cols=80 Identities=13% Similarity=0.121 Sum_probs=57.7 Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC---CCCC--CHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC Q ss_conf 885156676889888899999999997418872999924---9898--87899999999999999759882340661036 Q gi|255764485|r 84 DIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIP---SPTV--SSASIRRAVKDIRKIIISSGIPVSSISERIYD 158 (243) Q Consensus 84 DIpVg~g~g~Lt~~qr~~V~gFa~~yrr~G~G~i~I~vP---sGS~--Na~AA~~~~~eIR~~L~~~GVp~~~I~v~~Y~ 158 (243) ++++..+.-.|++..+..+..++..-.......|.|.-= .|+. |-.-..+=+..|+..|...||++..|....|- T Consensus 16 ~v~F~~~s~~L~~~~~~~L~~ia~~l~~~~~~~I~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~G 95 (164) T 1r1m_A 16 KTLFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFMGSDKYNQALSERRAYVVANNLVSNGVPVSRISAVGLG 95 (164) T ss_dssp HHHHTTSSSCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECT T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEC T ss_conf 33572897436989999999999999778981899999818989855626999999999999999859998998999976 Q ss_pred CCCCC Q ss_conf 88854 Q gi|255764485|r 159 ADYGM 163 (243) Q Consensus 159 a~~p~ 163 (243) -+.|. T Consensus 96 e~~P~ 100 (164) T 1r1m_A 96 ESQAQ 100 (164) T ss_dssp TTTCC T ss_pred CCCCC T ss_conf 76888 No 6 >2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli K12} Probab=82.13 E-value=2.7 Score=21.15 Aligned_cols=79 Identities=10% Similarity=0.133 Sum_probs=60.7 Q ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-----CHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC Q ss_conf 851566768898888999999999974188729999249898-----878999999999999997598823406610368 Q gi|255764485|r 85 IPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV-----SSASIRRAVKDIRKIIISSGIPVSSISERIYDA 159 (243) Q Consensus 85 IpVg~g~g~Lt~~qr~~V~gFa~~yrr~G~G~i~I~vPsGS~-----Na~AA~~~~~eIR~~L~~~GVp~~~I~v~~Y~a 159 (243) |++..+.-.|++..+..+..++..-+....-.|.|.--+... |-.-...=+..|++.|...|+++..|.+..|-. T Consensus 36 v~F~~~s~~L~~~~~~~L~~ia~~L~~~~~~~i~I~GhtD~~g~~~~N~~LS~~RA~~V~~~L~~~Gi~~~rl~~~g~G~ 115 (149) T 2k1s_A 36 VTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQGVDASRIRTQGLGP 115 (149) T ss_dssp HHBSSSSSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEECCCTTCHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEECTT T ss_pred CEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEEECC T ss_conf 05429972269889999999999996489957999988078689557368999999999999998599932599999867 Q ss_pred CCCC Q ss_conf 8854 Q gi|255764485|r 160 DYGM 163 (243) Q Consensus 160 ~~p~ 163 (243) +.|- T Consensus 116 ~~P~ 119 (149) T 2k1s_A 116 ANPI 119 (149) T ss_dssp TCCS T ss_pred CCCC T ss_conf 5777 No 7 >2kgw_A Outer membrane protein A; OMPA- like, cell membrane, transmembrane; NMR {Mycobacterium tuberculosis} Probab=80.24 E-value=3.1 Score=20.72 Aligned_cols=80 Identities=8% Similarity=0.008 Sum_probs=60.2 Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-----CHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC Q ss_conf 8851566768898888999999999974188729999249898-----87899999999999999759882340661036 Q gi|255764485|r 84 DIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV-----SSASIRRAVKDIRKIIISSGIPVSSISERIYD 158 (243) Q Consensus 84 DIpVg~g~g~Lt~~qr~~V~gFa~~yrr~G~G~i~I~vPsGS~-----Na~AA~~~~~eIR~~L~~~GVp~~~I~v~~Y~ 158 (243) +|++..|.-.|++..+..+...++.-...-...|.|.-=+.+. |..-..+=+..|++.|...||+...|.+..|- T Consensus 25 ~i~F~~gs~~l~~~~~~~L~~la~~l~~~~~~~i~I~GhtD~~g~~~~n~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~G 104 (129) T 2kgw_A 25 PIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATVGLG 104 (129) T ss_dssp CBCCCTTSSCCCHHHHHHHHHHHHHHHTCTTSCEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEECT T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHCHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEC T ss_conf 14864997325988999999999999978994799999817988810253799999999999999859998998999974 Q ss_pred CCCCC Q ss_conf 88854 Q gi|255764485|r 159 ADYGM 163 (243) Q Consensus 159 a~~p~ 163 (243) .+.|- T Consensus 105 ~~~p~ 109 (129) T 2kgw_A 105 SVNPI 109 (129) T ss_dssp TCSCC T ss_pred CCCCC T ss_conf 55767 No 8 >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 Probab=79.76 E-value=3.2 Score=20.62 Aligned_cols=28 Identities=4% Similarity=-0.065 Sum_probs=15.9 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEC Q ss_conf 8999999999999997598823406610 Q gi|255764485|r 129 ASIRRAVKDIRKIIISSGIPVSSISERI 156 (243) Q Consensus 129 ~AA~~~~~eIR~~L~~~GVp~~~I~v~~ 156 (243) ..+......+.......+.+...|.+-. T Consensus 322 ~~~~~~~~~i~~~~~~~~~~~~~iavL~ 349 (673) T 1uaa_A 322 HEAERVTGELIAHHFVNKTQYKDYAILY 349 (673) T ss_dssp HHHHHHHHHHHHHHHHHCCCTTTEEEEE T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEE T ss_conf 9998888887654202567732145410 No 9 >3khn_A MOTB protein, putative; structural genomics, OMPA-like domain, PSI-2, protein structure initiative; 2.03A {Desulfovibrio vulgaris str} Probab=72.49 E-value=5 Score=19.34 Aligned_cols=80 Identities=5% Similarity=0.014 Sum_probs=61.6 Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC----------CCHHHHHHHHHHHHHHHHHCCCCCCCEE Q ss_conf 885156676889888899999999997418872999924989----------8878999999999999997598823406 Q gi|255764485|r 84 DIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPT----------VSSASIRRAVKDIRKIIISSGIPVSSIS 153 (243) Q Consensus 84 DIpVg~g~g~Lt~~qr~~V~gFa~~yrr~G~G~i~I~vPsGS----------~Na~AA~~~~~eIR~~L~~~GVp~~~I~ 153 (243) +|++..|.-.|++.....+..++.-........|.|.--+.+ .|-.-...=+..|.+.|...|+++..|. T Consensus 52 ~v~F~~gs~~L~~~~~~~L~~la~~l~~~~~~~i~I~GHTD~~~~~~~~~~~~N~~LS~~RA~aV~~~L~~~gi~~~ri~ 131 (174) T 3khn_A 52 EVLFAPGAVELAPGADRVLATLKDLFIRRREQNINIKGFTDDVQPSANARFKDNWEVSALRSVNVLRYFLGAGIEPARLT 131 (174) T ss_dssp HHHBCTTCCSBCTTHHHHHHHHHHHHHHTTTCEEEEEEECCSCCCCTTSSCSSHHHHHHHHHHHHHHHHHHTTCCGGGEE T ss_pred CCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHEEE T ss_conf 84007997534976999999999999778995899999817877555667210478999999999999998499953399 Q ss_pred EECCCCCCCC Q ss_conf 6103688854 Q gi|255764485|r 154 ERIYDADYGM 163 (243) Q Consensus 154 v~~Y~a~~p~ 163 (243) +..|--..|- T Consensus 132 ~~g~G~~~P~ 141 (174) T 3khn_A 132 ATGLGELDPL 141 (174) T ss_dssp EEEEETSSCS T ss_pred EEEEECCCCC T ss_conf 9998256778 No 10 >3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi} Probab=66.15 E-value=6.7 Score=18.46 Aligned_cols=81 Identities=9% Similarity=0.012 Sum_probs=59.9 Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-----CHHHHHHHHHHHHHHHHHCCCC-CCCEEEE Q ss_conf 698851566768898888999999999974188729999249898-----8789999999999999975988-2340661 Q gi|255764485|r 82 IVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV-----SSASIRRAVKDIRKIIISSGIP-VSSISER 155 (243) Q Consensus 82 tlDIpVg~g~g~Lt~~qr~~V~gFa~~yrr~G~G~i~I~vPsGS~-----Na~AA~~~~~eIR~~L~~~GVp-~~~I~v~ 155 (243) +.||.+..+.-.|+......+..+++--.......|.|.==+.+. |..-..+=+..|+..|...|++ +..|.+. T Consensus 16 ~~~i~F~~~s~~l~~~~~~~L~~ia~~l~~~~~~~I~I~Ghtd~~g~~~~N~~LS~~RA~aV~~~L~~~g~~~~~ri~~~ 95 (123) T 3oon_A 16 SFDIEFYPNSFQILQKEYKKIDLIAKLLEKFKKNNILIEGHTEQFGLEEEMHELSEKRARAIGNYLIKMKVKDKDQILFK 95 (123) T ss_dssp EEEEEBCTTSCCBCGGGHHHHHHHHHHHHHSCSCCEEEEECCCSCCCHHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEE T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE T ss_conf 77868669983279989999999999998689956999998179875556479999999999999998599987689999 Q ss_pred CCCCCCC Q ss_conf 0368885 Q gi|255764485|r 156 IYDADYG 162 (243) Q Consensus 156 ~Y~a~~p 162 (243) .|--..| T Consensus 96 g~Ge~~p 102 (123) T 3oon_A 96 GWGSQKP 102 (123) T ss_dssp ECTTCC- T ss_pred EEECCCC T ss_conf 9834774 No 11 >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* Probab=61.44 E-value=8.1 Score=17.89 Aligned_cols=25 Identities=8% Similarity=0.022 Sum_probs=12.9 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEE Q ss_conf 9999999999999975988234066 Q gi|255764485|r 130 SIRRAVKDIRKIIISSGIPVSSISE 154 (243) Q Consensus 130 AA~~~~~eIR~~L~~~GVp~~~I~v 154 (243) -+.....+|..++..++++.+.|.+ T Consensus 332 e~~~~~~~i~~~~~~~~~~~~diAI 356 (724) T 1pjr_A 332 EAQFVAGRIREAVERGERRYRDFAV 356 (724) T ss_dssp HHHHHHHHHHHHHTTTSCCGGGEEE T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEE T ss_conf 9998776899999807998200168 No 12 >1x3a_A Synapse associated protein 1; BSD domain, homolog of the drosophila SAP47, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.240.1.1 Probab=42.90 E-value=12 Score=16.71 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=20.6 Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH Q ss_conf 676489999999------99875679999999999999 Q gi|255764485|r 18 GLANMRSLISCL------KTIFWKNFFLRTLMLGQLFF 49 (243) Q Consensus 18 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 49 (243) .-.+++.+...| ...||+++|.|.-.+-|-.= T Consensus 55 ~d~~L~~~~~~LVP~~v~e~~FW~rYF~~v~~i~q~ee 92 (100) T 1x3a_A 55 EDELLSKMRFALVPKLVKEEVFWRNYFYRVSLIKQSAQ 92 (100) T ss_dssp HCHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHHHHHHH T ss_pred HCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 79799999998787874899999999999999999998 No 13 >2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens cn-32} Probab=35.46 E-value=21 Score=15.18 Aligned_cols=26 Identities=15% Similarity=0.335 Sum_probs=14.7 Q ss_pred HHHHHHHHHHHH-HCCCCCCCEEEECC Q ss_conf 999999999999-75988234066103 Q gi|255764485|r 132 RRAVKDIRKIII-SSGIPVSSISERIY 157 (243) Q Consensus 132 ~~~~~eIR~~L~-~~GVp~~~I~v~~Y 157 (243) ...++++|+.|. +.|||+..|...+| T Consensus 200 ~~~v~avR~~L~~e~Gvp~~~i~~~~Y 226 (252) T 2gpj_A 200 FNSMRALRRHFKQAHALPKSHFYTSSY 226 (252) T ss_dssp HHHHHHHHHHHHHHCCCCGGGEEEEEE T ss_pred HHHHHHHHHHHHHHHCCCHHHEEEEEE T ss_conf 999999999999865999899699962 No 14 >2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A* Probab=31.08 E-value=24 Score=14.71 Aligned_cols=13 Identities=8% Similarity=0.437 Sum_probs=5.3 Q ss_pred HHHHHHHHCCCCC Q ss_conf 9999999759882 Q gi|255764485|r 137 DIRKIIISSGIPV 149 (243) Q Consensus 137 eIR~~L~~~GVp~ 149 (243) ++...|...|||. T Consensus 362 ~l~~~L~~~~Ip~ 374 (680) T 2is6_A 362 VLEEALLQASMPY 374 (680) T ss_dssp HHHHHHHHTTCCE T ss_pred HHHHHHHHCCCCE T ss_conf 9999999769988 No 15 >2pw0_A PRPF methylaconitate isomerase; propionate catabolism, diaminopimelate epimerase like, aconitate binding, unknown function; HET: TRC; 1.57A {Shewanella oneidensis} PDB: 2pvz_A 2h9f_A Probab=29.36 E-value=26 Score=14.52 Aligned_cols=32 Identities=13% Similarity=0.415 Sum_probs=24.1 Q ss_pred CCCCCCCCCEEEEEEEEEEE-CCCCC-CCCHHHC Q ss_conf 88854368466775444541-78889-9813314 Q gi|255764485|r 159 ADYGMDVDTIRLSYFASKPS-AGKCG-FWPEDML 190 (243) Q Consensus 159 a~~p~~aAPIRLSY~ri~A~-ag~CG-~WPeDL~ 190 (243) ..-|+.+|||+|+|...... ++.|| ++|.... T Consensus 168 dGVpGt~a~I~l~F~d~aGs~~~~tG~LlPTGn~ 201 (397) T 2pw0_A 168 DGVTFPAAEVQIEFMNPAADDDGEGGCMFPTGNL 201 (397) T ss_dssp TTCSSCBCCEEEEEESCBC--------CCTTSCS T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC T ss_conf 6878888860477006235788877773799997 No 16 >1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2 Probab=22.20 E-value=34 Score=13.65 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=9.8 Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCC Q ss_conf 9999999997598823406610368 Q gi|255764485|r 135 VKDIRKIIISSGIPVSSISERIYDA 159 (243) Q Consensus 135 ~~eIR~~L~~~GVp~~~I~v~~Y~a 159 (243) ..++++.|.+.||+...|....|-| T Consensus 222 ~~~v~~~L~~~Gv~~~~I~~E~F~p 246 (250) T 1tvc_A 222 IDAACELVRSRGIPGEQVFFEKFLP 246 (250) T ss_dssp HHHHHHHHHHHCCCCSEEEECCCSS T ss_pred HHHHHHHHHHCCCCHHHEEEEECCC T ss_conf 9999999998499889989954888 No 17 >2veq_A Centromere DNA-binding protein complex CBF3 subunit B; transcription factor, cell cycle, zinc, CEP3P, nucleus, phosphorylation; 2.49A {Saccharomyces cerevisiae} PDB: 2quq_A Probab=21.08 E-value=36 Score=13.50 Aligned_cols=80 Identities=19% Similarity=0.365 Sum_probs=45.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC----------------EEEECCCCCHHHCCCEEEEECCEEEEEECCCCCCCCCHHHH Q ss_conf 79999999999999999960220----------------01102788711138577733772698851566768898888 Q gi|255764485|r 36 NFFLRTLMLGQLFFLLLFYGTSA----------------LAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIH 99 (243) Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~DYR~RHPIvi~Ea~~tlDIpVg~g~g~Lt~~qr 99 (243) .|.|++.+-.-.-.-+.||+++. +....++.|.=.|||+|+. .= T Consensus 361 ~f~ln~V~WKl~k~~~iyYd~~~sl~kl~h~tk~iIaLvv~N~~~~~~~fNkhP~Vl~--------------------~l 420 (565) T 2veq_A 361 LFQISTVSWKLFKMYLIYYDTADSLLKVIHYSKVIISLIVNNFHAKSEFFNRHPMVMQ--------------------TI 420 (565) T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHGGGTTTSGGGGGSHHHHH--------------------HH T ss_pred HHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHH--------------------HH T ss_conf 9999988998651026886475338887658999999999887617423236962599--------------------99 Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 9999999999741887299992498988789999999999999975988 Q gi|255764485|r 100 DTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISSGIP 148 (243) Q Consensus 100 ~~V~gFa~~yrr~G~G~i~I~vPsGS~Na~AA~~~~~eIR~~L~~~GVp 148 (243) ..|.+|-.=|--- -++..++...-|+.++++.-+.+ T Consensus 421 s~v~~F~sfy~iF-------------~~s~~v~~L~~Dl~Ell~~L~~~ 456 (565) T 2veq_A 421 TRVVSFISFYQIF-------------VESAAVKQLLVDLTELTANLPTI 456 (565) T ss_dssp HHHHHHHHHHHHH-------------SCCHHHHHHHHHHHHHHHHSCGG T ss_pred HHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHCCHH T ss_conf 9999999999998-------------20778999998899999617523 No 18 >2ax3_A Hypothetical protein TM0922; putative carbohydrate kinase, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.27A {Thermotoga maritima MSB8} SCOP: c.72.1.4 c.104.1.1 Probab=21.04 E-value=36 Score=13.50 Aligned_cols=48 Identities=15% Similarity=0.220 Sum_probs=33.2 Q ss_pred EEECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 733772698851566768898888999999999974188729999249898 Q gi|255764485|r 76 MRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126 (243) Q Consensus 76 i~Ea~~tlDIpVg~g~g~Lt~~qr~~V~gFa~~yrr~G~G~i~I~vPsGS~ 126 (243) +.+.+=.+|--+|+| ++.+.+..+....+...+.+.-.+-|++|||-- T Consensus 118 ~~~~dliVDal~GtG---~~~~l~~~~~~~i~~iN~~~~~vvaiDIPSGl~ 165 (502) T 2ax3_A 118 LNEFDVVVDAIFGTG---LRGEITGEYAEIINLVNKSGKVVVSVDVPSGID 165 (502) T ss_dssp GGGCSEEEEESCCTT---CCSCCCHHHHHHHHHHHHSCCEEEEESSCTTBC T ss_pred CCCCCEEEECCEECC---CCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC T ss_conf 555657985245315---576544789999999763048279873587766 No 19 >1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli} Probab=20.78 E-value=37 Score=13.46 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=19.7 Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHC--CCCCCCEEEECCCCC Q ss_conf 1887299992498988789999999999999975--988234066103688 Q gi|255764485|r 112 DSASVLFLLIPSPTVSSASIRRAVKDIRKIIISS--GIPVSSISERIYDAD 160 (243) Q Consensus 112 ~G~G~i~I~vPsGS~Na~AA~~~~~eIR~~L~~~--GVp~~~I~v~~Y~a~ 160 (243) ..+.+|+|..-.|..... -...|+.+.+.+ |..+..|++...+++ T Consensus 121 ~~tASV~l~~~~~~~l~~----qv~~I~~LVa~sV~gL~~e~VtVv~q~~~ 167 (171) T 1yj7_A 121 PSSAAVLVISSPEVNLAP----SVIQIKNLVKNSVDDLKLENISVVIKSSS 167 (171) T ss_dssp -CEEEEEEEECTTCCCGG----GHHHHHHHHHHHSTTCCGGGEEEEEEECC T ss_pred CCEEEEEEECCCCCCCHH----HHHHHHHHHHHHCCCCCCCCEEEEECCCC T ss_conf 851799997189987699----99999999997269989113699974687 Done!