HHSEARCH alignment of GI: 255764485 and SCOP domain: d2hqsc1

Alignment

Probab=90.29  E-value=0.58  Score=24.03  Aligned_cols=80  Identities=8%  Similarity=0.059  Sum_probs=63.4

Q ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-----CHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf             8851566768898888999999999974188729999249898-----87899999999999999759882340661036
Q gi|255764485|r   84 DIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV-----SSASIRRAVKDIRKIIISSGIPVSSISERIYD  158 (243)
Q Consensus        84 DIpVg~g~g~Lt~~qr~~V~gFa~~yrr~G~G~i~I~vPsGS~-----Na~AA~~~~~eIR~~L~~~GVp~~~I~v~~Y~  158 (243)
                      .|++..+.-.|++.....+...+........-.|.|.-=+.+.     |-.-...=+..|+..|...||++..|.+..|-
T Consensus         3 ~iyF~~~s~~l~~~~~~~L~~l~~~l~~~~~~~i~I~GhtD~~g~~~~N~~LS~~RA~~V~~~L~~~Gi~~~ri~~~g~G   82 (106)
T d2hqsc1           3 IVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYG   82 (106)
T ss_dssp             EEECCTTCCCCCGGGHHHHHHHHHHHHHCTTCCEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECT
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf             89947997738988999999999999868995799984334221046665588998767999998669866448999835


Q ss_pred             CCCCC
Q ss_conf             88854
Q gi|255764485|r  159 ADYGM  163 (243)
Q Consensus       159 a~~p~  163 (243)
                      .+.|-
T Consensus        83 ~~~p~   87 (106)
T d2hqsc1          83 KEKPA   87 (106)
T ss_dssp             TSSCS
T ss_pred             CCCCC
T ss_conf             64767

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: OmpA-like
family: OmpA-like
domain: Peptidoglycan-associated lipoprotein, PAL, periplasmic domain
species: Escherichia coli [TaxId: 562]