RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|255764485|ref|YP_003065139.2| hypothetical protein
CLIBASIA_03065 [Candidatus Liberibacter asiaticus str. psy62]
(243 letters)
>gnl|CDD|150221 pfam09476, Pilus_CpaD, Pilus biogenesis CpaD protein (pilus_cpaD).
Proteins in this entry consist of a pilus biogenesis
protein, CpaD, from Caulobacter, and homologues in other
bacteria, including three in the root nodule bacterium
Bradyrhizobium japonicum. The molecular function of the
homologues is not known.
Length = 200
Score = 151 bits (383), Expect = 2e-37
Identities = 63/177 (35%), Positives = 99/177 (55%), Gaps = 1/177 (0%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR R+PI++ + ++ +D+P+ GRG + + GF +Y A L + +PS +
Sbjct: 24 DYRTRHPIVVEEADRTLDLPVGPGRGGLTASQRARLAGFAARYGRRGAGPLVIDVPSGSP 83
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
++ + ++R ++ ++G+P S+IS R YDA IR+SY CG WP
Sbjct: 84 NARAASALSAEVRALLAAAGVPPSNISVRAYDAAGARAPGPIRVSYTRYTAKVPPCGDWP 143
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYRQ 243
ED+ N+ + N+GCA QNNLAA V NP DL PR +TP D +R I++YR+
Sbjct: 144 EDLGAT-FENKPYPNFGCATQNNLAAMVANPRDLVQPRAMTPADGARRTTVIEKYRK 199
>gnl|CDD|162903 TIGR02522, pilus_cpaD, pilus (Caulobacter type) biogenesis
lipoprotein CpaD. This family consists of a pilus
biogenesis protein, CpaD, from Caulobacter, and homologs
in other bacteria, including three in the root nodule
bacterium Bradyrhizobium japonicum. The molecular
function is not known.
Length = 198
Score = 141 bits (357), Expect = 2e-34
Identities = 67/176 (38%), Positives = 95/176 (53%), Gaps = 7/176 (3%)
Query: 67 DYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTV 126
DYR R+PI +++ +D+ + G + D + GFL+ + SA L L+IPS
Sbjct: 28 DYRQRHPIAVQESSVSIDLLVAPGDRGLSASQQDQLLGFLKDWGRASAQTLTLIIPSAAA 87
Query: 127 SSASIRRAVKDIRKIIISSGIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGKCGFWP 186
+ + +IR+++ +SG+ ++ G D IR+SY A KCG WP
Sbjct: 88 EAMA-----GEIRRVLAASGVGARNVKVMYRATASG-DTGPIRVSYVAYVAQTTKCGIWP 141
Query: 187 EDMLGNAKGNRNWTNYGCAYQNNLAAQVVNPLDLFSPRMVTPPDAEQRDKSIQRYR 242
ED L K N + N+GCA QNNLAAQ+ NP DL PR +TP D E+RD I RYR
Sbjct: 142 ED-LLMTKLNEAYGNFGCATQNNLAAQIANPRDLLGPRAMTPADGERRDIVIDRYR 196
>gnl|CDD|179009 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 29.4 bits (67), Expect = 0.89
Identities = 29/170 (17%), Positives = 49/170 (28%), Gaps = 51/170 (30%)
Query: 5 YMITILFGGVCFKGLANMRSLISCLKTIFWKNFFLRTLMLGQLF-FLLLFYGTSALAYYD 63
+ L G F+G+ ++ + + L +L L +
Sbjct: 54 AKLLRLKGLPPFEGVKDIDDALKRAEK-------GGVLSGDELLEIAKTLRYFRQLKRFI 106
Query: 64 EGSDYRDRYPILMRKVEQIVDIPLLA--------GRGEIKYPIHDTIRGFLEKYKNDSAS 115
E + + PIL V +I +P L GE+K DSAS
Sbjct: 107 EDLEEEEELPILEEWVAKIRTLPELEQEIHNCIDEEGEVK----------------DSAS 150
Query: 116 VLFLLIPSPTVSSASIRRAVKDIR--------KIIISSGIPVSSISERIY 157
IRR ++ + II S + + + I
Sbjct: 151 EKL----------RGIRRQLRRKKSRIREKLESIIRSKSL-QKYLQDTII 189
>gnl|CDD|177587 PHA03334, PHA03334, putative DNA polymerase catalytic subunit;
Provisional.
Length = 1545
Score = 28.7 bits (64), Expect = 1.4
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 9/58 (15%)
Query: 156 IYDADYGMDVDTIRLSYFASKPSAGKCGFWPEDMLGNAKGNRNWTNYGCAYQNNLAAQ 213
+Y+A++ + V RL+Y+A K L A W + + AQ
Sbjct: 351 VYNAEFDVQVIQSRLNYYAFK--------QRPHPLTKALM-EAWEAFLSKDPQLVPAQ 399
>gnl|CDD|180860 PRK07152, nadD, putative nicotinate-nucleotide adenylyltransferase;
Validated.
Length = 342
Score = 27.6 bits (62), Expect = 3.2
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 91 RGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPS 123
R + Y I DTI+ F +KY ND ++ +I S
Sbjct: 78 RQNVSYTI-DTIKYFKKKYPNDE---IYFIIGS 106
>gnl|CDD|152403 pfam11968, DUF3321, Protein of unknown function (DUF3321). This
family is conserved in fungi and is annotated as being a
nucleolar protein.
Length = 220
Score = 26.8 bits (60), Expect = 5.7
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 102 IRGFLEKYKNDSASVLFLLIPSPTVS 127
FL S LFL++P P V+
Sbjct: 131 TTKFLRPPGPGSPPSLFLVLPLPCVT 156
>gnl|CDD|149141 pfam07902, Gp58, gp58-like protein. Sequences found in this family
are derived from a number of bacteriophage and prophage
proteins. They are similar to gp58, a minor structural
protein of Lactococcus delbrueckii bacteriophage LL-H.
Length = 601
Score = 26.8 bits (59), Expect = 5.7
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 91 RGEIKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIIISS 145
IK I +T G + D+ L L+ S A IRR +D + + SS
Sbjct: 113 DTTIKNEIVETAGGIATRISEDTDKKLALINE----SIAGIRREYQDADRQLSSS 163
>gnl|CDD|132310 TIGR03266, methan_mark_1, putative methanogenesis marker protein 1.
Members of this protein family represent a distinct
clade among the larger set of proteins that belong to
families TIGR00702 and pfam02624. Proteins from this
clade are found in genome sequence if and only if the
species sequenced is one of the methanogens. All
methanogens belong to the archaea; some but not all of
those sequenced are hyperthermophiles. This protein
family was detected by the method of partial
phylogenetic profiling (see Haft, et al., 2006).
Length = 376
Score = 26.6 bits (59), Expect = 6.2
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 99 HDTIRGFLEKYKNDSASVLFLLIPS----PTVSSASIRRAVKD 137
+ + LEK+K+ V + S PTV++ S +KD
Sbjct: 198 NGYLYELLEKFKDAGVDVKLRDLTSDTGIPTVAAVSDDLKLKD 240
>gnl|CDD|181205 PRK08040, PRK08040, putative semialdehyde dehydrogenase;
Provisional.
Length = 336
Score = 26.6 bits (59), Expect = 6.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 120 LIPSPTVSSASIRRAVKDIRKIIISSGIPVS 150
L+P S RR V +RKI+ G+P+S
Sbjct: 201 LLPDSEGSVREERRLVDQVRKILQDEGLPIS 231
>gnl|CDD|170022 PRK09630, PRK09630, DNA topoisomerase IV subunit A; Provisional.
Length = 479
Score = 26.4 bits (58), Expect = 6.8
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Query: 94 IKYPIHDTIRGFLEKYKND-SASVL----------FL-LIPSPTVSSASIRRAVKDIRKI 141
IK+ ++DT+R L K K S+S L FL +P+P A+ + A I+KI
Sbjct: 349 IKHKLYDTVREMLSKRKTSPSSSDLHNAVLEALTPFLDTLPTPVDKQATAQLASLTIKKI 408
Query: 142 I 142
+
Sbjct: 409 L 409
>gnl|CDD|178721 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional.
Length = 360
Score = 26.3 bits (58), Expect = 7.1
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 173 FASKPSAGKCGFWPEDMLGNAKGNRNWTNY 202
+A+ + G + + NA G W +Y
Sbjct: 114 YANDQARGAAQGYGSKLAANASGQLEWEDY 143
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.325 0.141 0.426
Gapped
Lambda K H
0.267 0.0670 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,082,355
Number of extensions: 263179
Number of successful extensions: 702
Number of sequences better than 10.0: 1
Number of HSP's gapped: 696
Number of HSP's successfully gapped: 17
Length of query: 243
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 152
Effective length of database: 4,028,145
Effective search space: 612278040
Effective search space used: 612278040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.5 bits)