RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|255764485|ref|YP_003065139.2| hypothetical protein
CLIBASIA_03065 [Candidatus Liberibacter asiaticus str. psy62]
         (243 letters)



>2ffj_A Conserved hypothetical protein; 2649480, structural
           genomics, joint center for structural genomics, JCSG;
           2.45A {Archaeoglobus fulgidus dsm 4304} (A:81-300)
          Length = 220

 Score = 29.1 bits (65), Expect = 0.56
 Identities = 8/29 (27%), Positives = 9/29 (31%), Gaps = 3/29 (10%)

Query: 14  VCFKGLANMRSLISCLKTIFWKNFFLRTL 42
           +  KG AN   L            FL T 
Sbjct: 173 IVAKGXANYECLSDGSL---KPIAFLLTA 198


>2g8l_A 287AA long hypothetical protein; 3258004, structural
           genomics, PSI, protein structure initiative, joint
           center for structural genomics; 2.04A {Pyrococcus
           horikoshii} (A:81-299)
          Length = 219

 Score = 28.6 bits (64), Expect = 0.77
 Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 3/29 (10%)

Query: 14  VCFKGLANMRSLISCLKTIFWKNFFLRTL 42
           +  KG  N  +L         + FFL   
Sbjct: 169 IIAKGQGNFETLSEIND---SRIFFLLKA 194


>1dzf_A DNA-directed RNA polymerases I, II, and III 27 KD
           polypeptide; RNA polymerase subunit; 1.9A {Saccharomyces
           cerevisiae} (A:53-144)
          Length = 92

 Score = 28.2 bits (63), Expect = 1.1
 Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 2/43 (4%)

Query: 101 TIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVKDIRKIII 143
           T++ F+   +  +      +  +    SA   + V  I    I
Sbjct: 40  TMKTFVIHIQEKNFQTGIFVYQNNITPSA--MKLVPSIPPATI 80


>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase,
           structure, hydrolase; NMR {Methanosarcina mazei GO1}
           (A:)
          Length = 101

 Score = 28.1 bits (63), Expect = 1.1
 Identities = 8/43 (18%), Positives = 15/43 (34%)

Query: 94  IKYPIHDTIRGFLEKYKNDSASVLFLLIPSPTVSSASIRRAVK 136
           +       +   L K  N+S     + +      S S+R  +K
Sbjct: 50  MHNDDIGNLPEVLRKNLNESVQPTVVALGGSGSGSTSLREKIK 92


>2pz4_A Protein GBS052; SPAB, GRAM-positive pilins, adhesions,
           IGG-like domain, cell adhesion; 1.80A {Streptococcus
           agalactiae} (A:1-121)
          Length = 121

 Score = 27.2 bits (60), Expect = 2.3
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 144 SSGIPVSSISERIYDADYGMDVDTI----RLSYFASKPSAGKCGFWPEDMLGNAKGNR-- 197
             G P+  +  ++Y      D D +     L+    K  A +      +  G A  N+  
Sbjct: 27  KEGTPIEGVLYQLYQLKSTEDGDLLAHWNSLTITELKKQAQQVFEATTNQQGKATFNQLP 86

Query: 198 NWTNYGCAYQNNLAAQVVNP--LDLFSPRMVTP 228
           +   YG A +     + V+   +DL   +++ P
Sbjct: 87  DGIYYGLAVKAGEKNRNVSAFLVDLSEDKVIYP 119


>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta
           propeller, structural genomics, PSI-2, protein structure
           initiative; 1.90A {Bacteroides uniformis atcc 8492}
           (A:1-83,A:268-328)
          Length = 144

 Score = 26.5 bits (58), Expect = 3.3
 Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 3/56 (5%)

Query: 146 GIPVSSISERIYDADYGMDVDTIRLSYFASKPSAGK---CGFWPEDMLGNAKGNRN 198
           G+ V+  +  +Y AD         +  ++ +         G  P       + + +
Sbjct: 87  GLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVGIIPGAFCWKLEHHHH 142


>3k25_A SLR1438 protein; structural genomics, PSI-2, protein
           structure initiative, northeast structural genomics
           consortium, NESG, SGR112, P73504_SYNY3; 2.55A
           {Synechocystis SP} (A:)
          Length = 289

 Score = 26.4 bits (57), Expect = 3.6
 Identities = 10/74 (13%), Positives = 18/74 (24%), Gaps = 4/74 (5%)

Query: 55  GTSALAYYDEGSDYRDRYPILMRKVEQIVDIPLLAGRGEIKYPIHDTIRGF----LEKYK 110
                 + D     R   PIL      +            +   H   R      + +  
Sbjct: 47  YFDRERFQDPSLSVRGGIPILFPICGNLPQDQFNHAGKSYRLKQHGFARDLPWEVIGQQT 106

Query: 111 NDSASVLFLLIPSP 124
            D+A +   L  + 
Sbjct: 107 QDNARLDLRLSHND 120


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 25.9 bits (57), Expect = 5.2
 Identities = 5/24 (20%), Positives = 14/24 (58%), Gaps = 5/24 (20%)

Query: 1  MMVEYMITILFGGVCFKGLANMRS 24
          M +E ++ ++F    ++G+  M+ 
Sbjct: 6  MSIESLVEVVF----YRGMT-MQV 24


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.325    0.141    0.426 

Gapped
Lambda     K      H
   0.267   0.0474    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,874,684
Number of extensions: 83468
Number of successful extensions: 267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 10
Length of query: 243
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 157
Effective length of database: 2,048,819
Effective search space: 321664583
Effective search space used: 321664583
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.8 bits)