HHsearch alignment for GI: 255764486 and conserved domain: COG1177

>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].
Probab=99.93  E-value=1.1e-22  Score=162.67  Aligned_cols=217  Identities=23%  Similarity=0.362  Sum_probs=178.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             14322211012454565566774999999999999999999999999999998633055789999999998754489999
Q gi|255764486|r  231 FGIVWDPRFPALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYG  310 (493)
Q Consensus       231 f~~~W~p~~~~~~~~~~~~~~Gi~p~i~GTl~i~~iA~lia~Pigl~~Aiyl~eya~~~~~~~~~~~iellagiPSVVyG  310 (493)
T Consensus        49 ~Sl~WY~~l~-------~-~~~~~~a~~~Sl~IA~~s~~~s~~lg~~aA~al~r~-~~~g~~~~~~l~~~PlvvP~Iv~g  119 (267)
T COG1177          49 FSLKWYGALF-------S-DPRLLSALWNSLLIALLSALLATLLGTLAALALARY-RFRGKNLLEGLILLPLVVPDIVTG  119 (267)
T ss_pred             CCHHHHHHHH-------C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf             7889999985-------7-848999999999999999999999999999999970-402689999999742415099999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             99999999998753221001323421035575301799999999887768999999986212999988766088568999
Q gi|255764486|r  311 FFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETM  390 (493)
Q Consensus       311 ~f~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~s~l~a~l~l~imilP~i~~~~~~al~~vp~~lreaa~aLGat~~~ti  390 (493)
T Consensus       120 i~ll~~f~~~-------------------~~~~~~~~ivlaH~~~~lP~v~~~v~a~l~~~d~~L~eAA~dLGAs~~~~f  180 (267)
T COG1177         120 IALLLLFAAL-------------------GLPGGFWTIVLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQTF  180 (267)
T ss_pred             HHHHHHHHHC-------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHH
T ss_conf             9999999986-------------------887529999999999986689999999997389679999987699888898


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             99999830336999999999999875999999941222578670467112799999985022345754589999999999
Q gi|255764486|r  391 KYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTL  470 (493)
Q Consensus       391 ~~vvlP~a~~gI~~~~iL~~~RaiGETm~v~m~~G~~~~~~~~~~~~~~tlt~~I~~~~~g~~~~~~~~~~~~fa~gl~L  470 (493)
T Consensus       181 ~~V~LP~i~PgIlsg~llaF~~S~Defvit~f~~gp----------~~~TLP~~i~s~~r~----~--~~P~i~Alstll  244 (267)
T COG1177         181 RRVTLPLILPGILSGALLAFTLSFDEFVITFFLAGP----------GFTTLPLQIYSMIRR----G--ITPEINALSTLL  244 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC----------CCCCHHHHHHHHHHC----C--CCHHHHHHHHHH
T ss_conf             997697527999999999999998677863113289----------987218999998655----8--981999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999997542
Q gi|255764486|r  471 FCITFFLNIYAMYIMKKYQRK  491 (493)
Q Consensus       471 ~~~tl~~N~~a~~i~~r~r~~  491 (493)
T Consensus       245 ~~~~~ll~~~~~~~~~~~~~~  265 (267)
T COG1177         245 LLLSLLLILLASRLLRRRARK  265 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999986433321