HHsearch alignment for GI: 255764486 and conserved domain: COG1177
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].
Probab=99.93 E-value=1.1e-22 Score=162.67 Aligned_cols=217 Identities=23% Similarity=0.362 Sum_probs=178.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 14322211012454565566774999999999999999999999999999998633055789999999998754489999
Q gi|255764486|r 231 FGIVWDPRFPALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYG 310 (493)
Q Consensus 231 f~~~W~p~~~~~~~~~~~~~~Gi~p~i~GTl~i~~iA~lia~Pigl~~Aiyl~eya~~~~~~~~~~~iellagiPSVVyG 310 (493)
T Consensus 49 ~Sl~WY~~l~-------~-~~~~~~a~~~Sl~IA~~s~~~s~~lg~~aA~al~r~-~~~g~~~~~~l~~~PlvvP~Iv~g 119 (267)
T COG1177 49 FSLKWYGALF-------S-DPRLLSALWNSLLIALLSALLATLLGTLAALALARY-RFRGKNLLEGLILLPLVVPDIVTG 119 (267)
T ss_pred CCHHHHHHHH-------C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 7889999985-------7-848999999999999999999999999999999970-402689999999742415099999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 99999999998753221001323421035575301799999999887768999999986212999988766088568999
Q gi|255764486|r 311 FFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETM 390 (493)
Q Consensus 311 ~f~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~s~l~a~l~l~imilP~i~~~~~~al~~vp~~lreaa~aLGat~~~ti 390 (493)
T Consensus 120 i~ll~~f~~~-------------------~~~~~~~~ivlaH~~~~lP~v~~~v~a~l~~~d~~L~eAA~dLGAs~~~~f 180 (267)
T COG1177 120 IALLLLFAAL-------------------GLPGGFWTIVLAHIVFALPFVVVVVSARLQGFDRSLEEAARDLGASPWQTF 180 (267)
T ss_pred HHHHHHHHHC-------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHH
T ss_conf 9999999986-------------------887529999999999986689999999997389679999987699888898
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999830336999999999999875999999941222578670467112799999985022345754589999999999
Q gi|255764486|r 391 KYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTL 470 (493)
Q Consensus 391 ~~vvlP~a~~gI~~~~iL~~~RaiGETm~v~m~~G~~~~~~~~~~~~~~tlt~~I~~~~~g~~~~~~~~~~~~fa~gl~L 470 (493)
T Consensus 181 ~~V~LP~i~PgIlsg~llaF~~S~Defvit~f~~gp----------~~~TLP~~i~s~~r~----~--~~P~i~Alstll 244 (267)
T COG1177 181 RRVTLPLILPGILSGALLAFTLSFDEFVITFFLAGP----------GFTTLPLQIYSMIRR----G--ITPEINALSTLL 244 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC----------CCCCHHHHHHHHHHC----C--CCHHHHHHHHHH
T ss_conf 997697527999999999999998677863113289----------987218999998655----8--981999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999997542
Q gi|255764486|r 471 FCITFFLNIYAMYIMKKYQRK 491 (493)
Q Consensus 471 ~~~tl~~N~~a~~i~~r~r~~ 491 (493)
T Consensus 245 ~~~~~ll~~~~~~~~~~~~~~ 265 (267)
T COG1177 245 LLLSLLLILLASRLLRRRARK 265 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999986433321