HHsearch alignment for GI: 255764486 and conserved domain: TIGR00974

>TIGR00974 3a0107s02c phosphate ABC transporter, permease protein PstA; InterPro: IPR005672 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices,; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=100.00  E-value=0  Score=444.73  Aligned_cols=280  Identities=27%  Similarity=0.492  Sum_probs=238.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHH
Q ss_conf             9999999999858999999999999621224565302343220143222110124545655--66774999999999999
Q gi|255764486|r  188 EKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVM--GQFGLIPLLIGTFYIGF  265 (493)
Q Consensus       188 Ek~i~~ll~~~s~iAIl~t~gIv~sl~~es~~ff~~v~~~~flf~~~W~p~~~~~~~~~~~--~~~Gi~p~i~GTl~i~~  265 (493)
T Consensus         1 ~~~~~~~~~~~~~~~~~~L~~il~~i~~~G~~~ln~~n-~~fft~~~-~~~-------~~~~~~~GGi~~AivGT~~~~~   71 (302)
T TIGR00974         1 DKIATALSLLSALLALLPLIWILWYILIKGLPALNNNN-LEFFTSSP-TPT-------GTEGDGEGGIGPAIVGTLLLIL   71 (302)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCC-CCEEEECC-CCC-------CCCCCCCCCHHHHHHHHHHHHH
T ss_conf             92788899999999999999999999962300021157-60045357-777-------7888887533677999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9999999999999999986330-557899999999987544899999999999999875322100132342103557530
Q gi|255764486|r  266 IAMLFSVPIGLLIAIYMAEYAP-KKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQS  344 (493)
Q Consensus       266 iA~lia~Pigl~~Aiyl~eya~-~~~~~~~~~~iellagiPSVVyG~f~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~s  344 (493)
T Consensus        72 ~~~~ia~PlGi~~aiYL~EYa~~~~~~~~ir~~~~~LaG~PSIv~GLFg~~~fv~~~~-------------i-~l~~~~S  137 (302)
T TIGR00974        72 LAIVIAVPLGIGAAIYLAEYAKEGRFTKFIRFAVDVLAGVPSIVVGLFGYALFVKTLG-------------I-YLGGGFS  137 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------H-HHHHHHH
T ss_conf             9999999999998887553067894005687888875211699999999999997768-------------6-4522067


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             17999-99999887768999999986212999988766088568999999998303369999999999998759999999
Q gi|255764486|r  345 VLTAG-LVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLA  423 (493)
Q Consensus       345 ~l~a~-l~l~imilP~i~~~~~~al~~vp~~lreaa~aLGat~~~ti~~vvlP~a~~gI~~~~iL~~~RaiGETm~v~m~  423 (493)
T Consensus       138 ~laG~~LaLa~L~LP~iirtTeEal~~VP~~~Reas~ALGa~Kw~TI~~~vLP~A~~GI~TG~iL~iaR~~GETAPLl~T  217 (302)
T TIGR00974       138 ALAGALLALAILILPVIIRTTEEALKAVPKDLREASLALGATKWQTILKIVLPAALPGILTGIILSIARAAGETAPLLFT  217 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             78799999999999999999899997247888899997260021133224413103689999999999999989999999


Q ss_pred             HCCCCCCCCC----------------CCCCCCHHHHHHHHHHCC-C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4122257867----------------046711279999998502-2-345754589999999999999999999999999
Q gi|255764486|r  424 AGVAARLQFN----------------PFESMTTITVKIMNQLTG-D-LDFSSPQTLVAFALGLTLFCITFFLNIYAMYIM  485 (493)
Q Consensus       424 ~G~~~~~~~~----------------~~~~~~tlt~~I~~~~~g-~-~~~~~~~~~~~fa~gl~L~~~tl~~N~~a~~i~  485 (493)
T Consensus       218 A~~~~~~~~~~~~~N~~~~~p~~~d~l~~~~~~L~~~iY~~~~~~~~~~~~~~~~~~a~~aalvL~~~vl~~N~~a~~~~  297 (302)
T TIGR00974       218 AGGSSSFLLGNSVLNDLPKAPLGEDLLLSPPAALPVLIYNLASELANAPYSEARNELAWAAALVLIVLVLLLNLIARLLR  297 (302)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99887764103566777677777542257641368888876401467884268889999999999999999999999999


Q ss_pred             HHHHH
Q ss_conf             99754
Q gi|255764486|r  486 KKYQR  490 (493)
Q Consensus       486 ~r~r~  490 (493)
T Consensus       298 ~~~~~  302 (302)
T TIGR00974       298 RRFKK  302 (302)
T ss_pred             HHHCC
T ss_conf             75249