Query gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 493
No_of_seqs 249 out of 2375
Neff 6.3
Searched_HMMs 13730
Date Wed Jun 1 07:50:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764486.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3d31c1 f.58.1.1 (C:13-260) Su 99.9 7.3E-24 5.3E-28 167.4 23.6 203 252-480 44-246 (248)
2 d2onkc1 f.58.1.1 (C:1-252) Mol 99.9 5.4E-22 4E-26 155.4 22.1 205 252-484 46-250 (252)
3 d2r6gf2 f.58.1.1 (F:261-504) M 99.9 2.1E-20 1.6E-24 145.2 19.5 224 252-479 16-243 (244)
4 d2r6gg1 f.58.1.1 (G:7-296) Mal 99.8 9.7E-19 7.1E-23 134.7 22.0 201 248-476 70-270 (290)
5 d3dhwa1 f.58.1.1 (A:6-208) D-m 99.8 8.3E-20 6E-24 141.5 16.0 192 253-480 4-201 (203)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 75.5 1.7 0.00012 18.2 6.3 48 7-60 39-86 (100)
7 d1fftb2 f.17.2.1 (B:27-117) Cy 62.3 0.46 3.3E-05 21.7 -1.1 47 9-59 30-76 (91)
8 d3ehbb2 f.17.2.1 (B:1-107) Bac 45.0 6 0.00044 14.6 7.5 11 47-57 79-89 (107)
9 d2e9xc1 a.278.1.3 (C:1088-1192 35.1 8.5 0.00062 13.6 2.4 23 28-50 15-38 (105)
10 d1v54b2 f.17.2.1 (B:1-90) Mito 29.2 11 0.00078 13.0 6.7 16 44-59 60-75 (90)
No 1
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=99.93 E-value=7.3e-24 Score=167.41 Aligned_cols=203 Identities=18% Similarity=0.231 Sum_probs=164.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74999999999999999999999999999998633055789999999998754489999999999999987532210013
Q gi|255764486|r 252 GLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGL 331 (493)
Q Consensus 252 Gi~p~i~GTl~i~~iA~lia~Pigl~~Aiyl~eya~~~~~~~~~~~iellagiPSVVyG~f~~~~l~p~~~~~~~~~~~~ 331 (493)
..+..+.+|+.+++++..+++++|+..|.+++++ +.|.|+.++.+..++..+|++++|+.-...+++. +..
T Consensus 44 ~~~~~l~~Sl~~a~~s~~i~~~lg~~~a~~~~~~-~~~~~~~~~~l~~~p~~ip~vv~~~~~~~~~~~~--------~~~ 114 (248)
T d3d31c1 44 SVISSIFLSLYAGFLATLLALLLGAPTGYILARF-DFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSR--------GLI 114 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCTTHHHHHHHHHGGGTSCHHHHHHHHHHHHSTT--------STT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCC--------CCC
T ss_conf 9999999999999999999999999999999864-6512568999999999999720002445203432--------111
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23421035575301799999999887768999999986212999988766088568999999998303369999999999
Q gi|255764486|r 332 ITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTAS 411 (493)
Q Consensus 332 ~~~~~~~~~~~~s~l~a~l~l~imilP~i~~~~~~al~~vp~~lreaa~aLGat~~~ti~~vvlP~a~~gI~~~~iL~~~ 411 (493)
............+.....+++..+.+|++....+++++++|++++|||..+|+||||+.+||++|..+|+++++.++++.
T Consensus 115 ~~~~~~~~~~~~~~~~iii~~~~~~~p~~~~~~~~~l~~i~~~~~eAA~~lGas~~~~~~~I~lP~~~p~i~~~~~l~f~ 194 (248)
T d3d31c1 115 GEPLESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWA 194 (248)
T ss_dssp TGGGTTTCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 11222211245642001001101100368888899997103368999876310423477898899999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998759999999412225786704671127999999850223457545899999999999999999999
Q gi|255764486|r 412 RTIGETMIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIY 480 (493)
Q Consensus 412 RaiGETm~v~m~~G~~~~~~~~~~~~~~tlt~~I~~~~~g~~~~~~~~~~~~fa~gl~L~~~tl~~N~~ 480 (493)
++++|..++.++.|+ ..|++..|.++.. +.+. ..+.|.+++++++++++..+
T Consensus 195 ~~~~~~~~~~~l~~~-----------~~~~~~~i~~~~~-~~~~-----~~a~a~a~il~~~~l~~~~v 246 (248)
T d3d31c1 195 RAISEFGAVVILAYY-----------PMVGPTLIYDRFI-SYGL-----SASRPIAVLLILVTLSIFLV 246 (248)
T ss_dssp HHHTCCHHHHHHHCT-----------TCCHHHHHHHHHH-HSTT-----TTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-----------CCHHHHHHHHHHH-HCCH-----HHHHHHHHHHHHHHHHHHHH
T ss_conf 999999988733189-----------8409999999999-5589-----99999999999999999998
No 2
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.91 E-value=5.4e-22 Score=155.44 Aligned_cols=205 Identities=18% Similarity=0.209 Sum_probs=162.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74999999999999999999999999999998633055789999999998754489999999999999987532210013
Q gi|255764486|r 252 GLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGL 331 (493)
Q Consensus 252 Gi~p~i~GTl~i~~iA~lia~Pigl~~Aiyl~eya~~~~~~~~~~~iellagiPSVVyG~f~~~~l~p~~~~~~~~~~~~ 331 (493)
..+..+.+|+.+++++.++++.+|+..|.++..+ +.|.|+..+.+......+|.+|.++.....++|.-. ..
T Consensus 46 ~~~~~~~nSl~~~~~~~~i~~i~g~~la~~l~~~-~~~~~~~~~~~~~~p~~ip~~v~~~~~~~~~~~~~~-----~~-- 117 (252)
T d2onkc1 46 AVWKVVLTTYYAALISTLIAVIFGTPLAYILARK-SFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGL-----IG-- 117 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCSSHHHHHHHHHHHHHSCHHHHHHHHHHHHSTTST-----TT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC-----CC--
T ss_conf 8999999999999999999999999999999873-132168999998752168717777777641233210-----00--
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23421035575301799999999887768999999986212999988766088568999999998303369999999999
Q gi|255764486|r 332 ITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTAS 411 (493)
Q Consensus 332 ~~~~~~~~~~~~s~l~a~l~l~imilP~i~~~~~~al~~vp~~lreaa~aLGat~~~ti~~vvlP~a~~gI~~~~iL~~~ 411 (493)
.........+.....+++..+.+|+.....+++++++|++++|+|..+|+||||+.+||++|.++|+++++.++++.
T Consensus 118 ---~~~~~~~~~~~~~iii~~~~~~~p~~~~~~~~~~~~i~~~~~eaA~~lGas~~~~~~~i~lP~~~p~i~~~~~l~~~ 194 (252)
T d2onkc1 118 ---SFSPLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWA 194 (252)
T ss_dssp ---TTCSSCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHH
T ss_conf ---12454420013321101001121103689999997503888878876699833254698708768899999999998
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9987599999994122257867046711279999998502234575458999999999999999999999999
Q gi|255764486|r 412 RTIGETMIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYI 484 (493)
Q Consensus 412 RaiGETm~v~m~~G~~~~~~~~~~~~~~tlt~~I~~~~~g~~~~~~~~~~~~fa~gl~L~~~tl~~N~~a~~i 484 (493)
++++|..++.+..|+ ..|.+..+..+. .+.+ +..+.+.+.++.++++++..+.+++
T Consensus 195 ~~~~~~~~~~~~~~~-----------~~~~~~~i~~~~-~~~~-----~~~~~a~~~il~~~~~~~~~~~~~~ 250 (252)
T d2onkc1 195 RGISEFGAVVVIAYY-----------PMIAPTLIYERY-LSEG-----LSAAMPVAAILILLSLAVFVALRII 250 (252)
T ss_dssp HHHHCCHHHHTTCCS-----------SCCHHHHHHHHH-HHHC-----GGGTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCC-----------CCHHHHHHHHHH-HHCC-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899998887511489-----------851999999999-8058-----9999999999999999999999995
No 3
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=99.87 E-value=2.1e-20 Score=145.25 Aligned_cols=224 Identities=13% Similarity=0.161 Sum_probs=168.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74999999999999999999999999999998633055789999999998754489999999999999987532210013
Q gi|255764486|r 252 GLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGL 331 (493)
Q Consensus 252 Gi~p~i~GTl~i~~iA~lia~Pigl~~Aiyl~eya~~~~~~~~~~~iellagiPSVVyG~f~~~~l~p~~~~~~~~~~~~ 331 (493)
..+..+..|+..+.+++++++++|+..|..++.+ +.|.|+..+..+-+..-+|+++.|+.-...+.|-...........
T Consensus 16 ~~~~~l~~t~~~~~~~~~~~~~~~~~lA~~l~~~-~~~~~~~~~~~~~~p~~ip~~v~~~~~~~~~~~~~g~~~~~l~~~ 94 (244)
T d2r6gf2 16 PFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWE-ALRGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSAL 94 (244)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-SSTTHHHHHHHTTHHHHSCHHHHHHHHHHHTCSSSSHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 9999999999999999999999999999999847-420478999999999984088999999998752355146666553
Q ss_pred HHHHHCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2342103--55753017999999998877689999999862129999887660885689999999983033699999999
Q gi|255764486|r 332 ITGNYKS--FIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMT 409 (493)
Q Consensus 332 ~~~~~~~--~~~~~s~l~a~l~l~imilP~i~~~~~~al~~vp~~lreaa~aLGat~~~ti~~vvlP~a~~gI~~~~iL~ 409 (493)
.+.... .....+.....++....-+|+.......+++++|+++.|||.-+||++||+.+||++|..+|++..+.++.
T Consensus 95 -~~~~~~~~~~~~~~~~~i~i~~v~~~~p~~~l~~~~~l~~I~~~l~EAA~idGAs~~~~f~~I~lPl~~p~i~~~~il~ 173 (244)
T d2r6gf2 95 -FGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIAS 173 (244)
T ss_dssp -SSCCCCTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCTHHHHHHHHTCCCSHHHHHHTTGGGTHHHHHHHHHHH
T ss_pred -CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf -0267741012779999999999997102779999999975999998999974997657749998544689999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999987599999994122257--8670467112799999985022345754589999999999999999999
Q gi|255764486|r 410 ASRTIGETMIVVLAAGVAARL--QFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNI 479 (493)
Q Consensus 410 ~~RaiGETm~v~m~~G~~~~~--~~~~~~~~~tlt~~I~~~~~g~~~~~~~~~~~~fa~gl~L~~~tl~~N~ 479 (493)
+-++.+|-..+.+..|+.+.. ...+-....++..+++..... ..+..++..+-|.+.+++++++++.+
T Consensus 174 fi~~~~~f~~~~~l~~ggp~~~~~~~~~~~~~~~~~~~y~~~~~--~~~~~~~g~aaA~avil~viv~~l~l 243 (244)
T d2r6gf2 174 FAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFE--GGGGQDFGLAAAIATLIFLLVGALAI 243 (244)
T ss_dssp HHHHHTCHHHHHHHCSSCSBCSSCSSCCBSSCCHHHHHHHHHTS--SSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99972005676442588887555666304999999999999986--25325299999999999999999997
No 4
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=99.84 E-value=9.7e-19 Score=134.65 Aligned_cols=201 Identities=14% Similarity=0.031 Sum_probs=150.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56677499999999999999999999999999999863305578999999999875448999999999999998753221
Q gi|255764486|r 248 MGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIY 327 (493)
Q Consensus 248 ~~~~Gi~p~i~GTl~i~~iA~lia~Pigl~~Aiyl~eya~~~~~~~~~~~iellagiPSVVyG~f~~~~l~p~~~~~~~~ 327 (493)
...++.+..+.+|+.++++++++++++|+..|..++.+ +.|.++.+.......--+|.++.+..-...+.+.-. .
T Consensus 70 ~~~~~~~~~~~nSl~~a~~~~~~~~~ig~~~a~~l~r~-~~~~~~~~~~~~~~~~~~P~~v~~i~~~~~~~~~g~----~ 144 (290)
T d2r6gg1 70 PPPFPVLLWLWNSVKVAGISAIGIVALSTTCAYAFARM-RFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGE----Y 144 (290)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCTTSHHHHHHHHHTTSSCSSSHHHHHHHHHHHHHH----H
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCHHHEEEHHHCCCCCCC----C
T ss_conf 45317999987667766545556656777788888874-413578999876413112312301002201133477----5
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00132342103557530179999999988776899999998621299998876608856899999999830336999999
Q gi|255764486|r 328 MNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAIL 407 (493)
Q Consensus 328 ~~~~~~~~~~~~~~~~s~l~a~l~l~imilP~i~~~~~~al~~vp~~lreaa~aLGat~~~ti~~vvlP~a~~gI~~~~i 407 (493)
......+...+-+....+-+|++......+++++|++++|||..+||++||+.+||++|..+|+|+++.+
T Consensus 145 ----------~~~~~~~~~~~ii~~~~~~~pf~~~~~~~~l~~i~~~l~EAA~~~GAs~~~~f~~I~lPl~~p~i~~~~i 214 (290)
T d2r6gg1 145 ----------IPFIGLNTHGGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFI 214 (290)
T ss_dssp ----------STTSSTTSHHHHHHHHTTTTHHHHHHHHHHHTTSCTHHHHHHHHTTCCHHHHHHHTTHHHHHHHHHHHHH
T ss_pred ----------CCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----------6621357413442223550364200132054111166665686539977888899888863125666787
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999875999999941222578670467112799999985022345754589999999999999999
Q gi|255764486|r 408 MTASRTIGETMIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFF 476 (493)
Q Consensus 408 L~~~RaiGETm~v~m~~G~~~~~~~~~~~~~~tlt~~I~~~~~g~~~~~~~~~~~~fa~gl~L~~~tl~ 476 (493)
+.+-...+|--...+..|. +..+|++..+.+.. ++. +..+..+.|.+.+.++..++
T Consensus 215 l~fi~~~~~f~~~~~~~~~---------~~~~t~~~~i~~~~-~~~---~~~~~~~~A~~~i~~i~~~i 270 (290)
T d2r6gg1 215 LSFIAAITEVPVASLLLRD---------VNSYTLAVGMQQYL-NPQ---NYLWGDFAAAAVMSALPITI 270 (290)
T ss_dssp HHHHHHHTCCHHHHHHCCS---------GGGCCHHHHGGGGB-CSS---CBCHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHCCCCCCCEECCCC---------CCCEEHHHHHHHHH-HHC---CCCHHHHHHHHHHHHHHHHH
T ss_conf 8766441101144111379---------87166999999998-440---53099999999999999999
No 5
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=99.84 E-value=8.3e-20 Score=141.49 Aligned_cols=192 Identities=19% Similarity=0.324 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 499999999999999999999999999999863------30557899999999987544899999999999999875322
Q gi|255764486|r 253 LIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEY------APKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISI 326 (493)
Q Consensus 253 i~p~i~GTl~i~~iA~lia~Pigl~~Aiyl~ey------a~~~~~~~~~~~iellagiPSVVyG~f~~~~l~p~~~~~~~ 326 (493)
+++.++.|+.+++.++.+++.+|+..|+.++.+ .++++.+...+..+.+.++|.++..++..... +..
T Consensus 4 ll~~~~~tl~is~~~~~i~~ilg~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~~~~~~~~----~~~-- 77 (203)
T d3dhwa1 4 LVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFT----RVI-- 77 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHH----HHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--
T ss_conf 99999999999999999999999999999999874443200899999999999999999999999999863----554--
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10013234210355753017999999998877689999999862129999887660885689999999983033699999
Q gi|255764486|r 327 YMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAI 406 (493)
Q Consensus 327 ~~~~~~~~~~~~~~~~~s~l~a~l~l~imilP~i~~~~~~al~~vp~~lreaa~aLGat~~~ti~~vvlP~a~~gI~~~~ 406 (493)
...+.+..++.+++.+...|++....+++++++|++++|++.++|++|||+++||++|.++|+++++.
T Consensus 78 ------------~~~~~~~~~~i~~~~~~~~p~~~~~~~~~l~~i~~~~~Eaa~~lGas~~q~~~~vilP~~~p~i~~~~ 145 (203)
T d3dhwa1 78 ------------VGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAA 145 (203)
T ss_dssp ------------TCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTTTHHHHHTCCTHHHHHHTTHHHHHHHHHHHH
T ss_pred ------------HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf ------------04541199999999998648999999988884362068999886994442418840997699999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998759999999412225786704671127999999850223457545899999999999999999999
Q gi|255764486|r 407 LMTASRTIGETMIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIY 480 (493)
Q Consensus 407 iL~~~RaiGETm~v~m~~G~~~~~~~~~~~~~~tlt~~I~~~~~g~~~~~~~~~~~~fa~gl~L~~~tl~~N~~ 480 (493)
++.+.++++|+....+..++ .+...+... +...++. ...++..++++++..++|.+
T Consensus 146 ~~~~~~~i~~~~~~~~ig~~-------------~~~~~~~~~--~~~~~~~---~~~~~~~~~~~i~v~li~~~ 201 (203)
T d3dhwa1 146 TITLITLVGYSAMGGAVGAG-------------GLGQIGYQY--GYIGYNA---TVMNTVLVLLVILVYLIQFA 201 (203)
T ss_dssp HHHHHHHHHHHHHCCSTTCC-------------HHHHHHHHH--HHSSCCT---THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH--HHHHCCH---HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999775-------------999999999--9874028---99999999999999999994
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=75.52 E-value=1.7 Score=18.15 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999997405888875584144899999999999999999
Q gi|255764486|r 7 FSIIFLGLVSYFLGCLRARFLSKKNAIRLYSKESYYGVYVALYSIIPYIFIFLL 60 (493)
Q Consensus 7 liIl~ls~~~yf~gr~RA~~l~~~~~~kLhSLP~YYG~y~aLw~~iPaliil~l 60 (493)
+.+++.+...|+.-|.|.++ +.+. +.-++--.-=..|+.+|++++..+
T Consensus 39 I~~~V~~~l~~~~~~~r~~~-----~~~~-~~~~~n~~LEiiWTviP~lILi~l 86 (100)
T d3dtub2 39 ITIFVTLLILYAVWRFHEKR-----NKVP-ARFTHNSPLEIAWTIVPIVILVAI 86 (100)
T ss_dssp HHHHHHHHHHHHHHHHBTTT-----CCSC-CCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCC-----CCCC-CCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999999962311359-----9887-524475468999999999999999
No 7
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=62.26 E-value=0.46 Score=21.74 Aligned_cols=47 Identities=17% Similarity=0.069 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999740588887558414489999999999999999
Q gi|255764486|r 9 IIFLGLVSYFLGCLRARFLSKKNAIRLYSKESYYGVYVALYSIIPYIFIFL 59 (493)
Q Consensus 9 Il~ls~~~yf~gr~RA~~l~~~~~~kLhSLP~YYG~y~aLw~~iPaliil~ 59 (493)
+...++..|+.-|.|.++ +..+..+..++.-.-=..|+.+|+++++.
T Consensus 30 v~V~~~~~~~~~ryR~~~----~~~~~~~~~~~n~~lEi~WtiIP~iil~~ 76 (91)
T d1fftb2 30 IPAILMAVGFAWKYRASN----KDAKYSPNWSHSNKVEAVVWTVPILIIIF 76 (91)
T ss_dssp THHHHHHHTTTTTTTTST----TTCSSCCCCCCCSHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHEEEECCC----CCCCCCCCCCCCCEEHHHHHHHHHHHHHH
T ss_conf 999999976403665168----76677986567964114689989999999
No 8
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=45.03 E-value=6 Score=14.61 Aligned_cols=11 Identities=9% Similarity=0.833 Sum_probs=3.7
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|255764486|r 47 ALYSIIPYIFI 57 (493)
Q Consensus 47 aLw~~iPalii 57 (493)
..|+.+|++++
T Consensus 79 i~WTviP~lIL 89 (107)
T d3ehbb2 79 VIWTLVPVLIL 89 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 9
>d2e9xc1 a.278.1.3 (C:1088-1192) GINS complex subunit 3, PSF3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.13 E-value=8.5 Score=13.63 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=16.2
Q ss_pred HHCCCCCCCCC-CCHHHHHHHHHH
Q ss_conf 40588887558-414489999999
Q gi|255764486|r 28 SKKNAIRLYSK-ESYYGVYVALYS 50 (493)
Q Consensus 28 ~~~~~~kLhSL-P~YYG~y~aLw~ 50 (493)
+..+...||++ |+||+.=.-+.-
T Consensus 15 ADp~~VdL~~~~p~fY~lg~~l~~ 38 (105)
T d2e9xc1 15 ADPNVVDLHKMGPHFYGFGSQLLH 38 (105)
T ss_dssp HCGGGSCTTTSCSSHHHHHHHGGG
T ss_pred CCCCEECHHHCCCHHHHHHHHHHH
T ss_conf 697701666228379999999998
No 10
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=29.16 E-value=11 Score=13.01 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|255764486|r 44 VYVALYSIIPYIFIFL 59 (493)
Q Consensus 44 ~y~aLw~~iPaliil~ 59 (493)
.--.+|+.+|++++.+
T Consensus 60 ~lEiiWTiiP~lILi~ 75 (90)
T d1v54b2 60 EVETIWTILPAIILIL 75 (90)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 0665799889999999
Done!