RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|255764486|ref|YP_003065119.2| ABC transporter, membrane
spanning protein [Candidatus Liberibacter asiaticus str. psy62]
(493 letters)
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease
protein MetI {Escherichia coli [TaxId: 562]}
Length = 203
Score = 47.8 bits (113), Expect = 2e-06
Identities = 32/176 (18%), Positives = 67/176 (38%), Gaps = 24/176 (13%)
Query: 253 LIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEY------APKKLRAVIKPITEMLVGIPT 306
L+ + T + F++ F IGL + + + A KL + I + IP
Sbjct: 4 LVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPF 63
Query: 307 IVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSED 366
I+ + + + + A + + + P+++ + E+
Sbjct: 64 IILLVWMIPFTRVI------------------VGTSIGLQAAIVPLTVGAAPFIARMVEN 105
Query: 367 VISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVL 422
+ IP L + S +GAT + ++ V+ P A PG+ A +T +G + +
Sbjct: 106 ALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGA 161
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease
protein MalF {Escherichia coli [TaxId: 562]}
Length = 244
Score = 45.7 bits (107), Expect = 9e-06
Identities = 27/223 (12%), Positives = 62/223 (27%)
Query: 257 LIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSL 316
+ T I + +V +G+++A + A + + I F
Sbjct: 21 FVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLF 80
Query: 317 VGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLR 376
F + + +V + PY+ L ++ +IP L
Sbjct: 81 NQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLY 140
Query: 377 DGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQFNPFE 436
+ S GA + + P + ++ + + +++ L
Sbjct: 141 EASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTP 200
Query: 437 SMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNI 479
+ T + +A A+ +F + L I
Sbjct: 201 AGYTDLLVNYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALAI 243
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter,
permease protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 248
Score = 32.6 bits (73), Expect = 0.067
Identities = 49/273 (17%), Positives = 102/273 (37%), Gaps = 28/273 (10%)
Query: 201 LSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVMGQFGLIPLLIGT 260
L+ V SF +++ F F ++ + + A G+ + +I + +
Sbjct: 2 LTFVFSFLLLVLFL---FIFLTLSNMIFEQITEDFSGLVKAAGNRS------VISSIFLS 52
Query: 261 FYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPF 320
Y GF+A L ++ +G +A + R V E ++ +P +V A +
Sbjct: 53 LYAGFLATLLALLLGAPTGYILARFDFPGKRLV-----ESIIDVPVVVPHTVAGIALLTV 107
Query: 321 LRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSL 380
+ L + V+ M + +PY+++ + + S+ L + +
Sbjct: 108 FGSRGLIGEPLESYIQFRDALPGIVVA----MLFVSMPYLANSAREGFKSVDPRLENAAR 163
Query: 381 GLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQFNPFESMTT 440
LGA + +V P + + +MT +R I E VV+ A M
Sbjct: 164 SLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAY----------YPMVG 213
Query: 441 ITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCI 473
T+ ++ L S P ++ + L++F +
Sbjct: 214 PTLIYDRFISYGLSASRPIAVLLILVTLSIFLV 246
>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating)
subunit 1 {Thermus thermophilus [TaxId: 274]}
Length = 437
Score = 29.4 bits (65), Expect = 0.61
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 360 VSSLSEDVISSIPRSLRDGSLGLGATRSET 389
+SL ED+ + +P+ + + L E
Sbjct: 20 AASL-EDLFAHLPKEILSPPIDLPEPLPEW 48
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease
protein MalG {Escherichia coli [TaxId: 562]}
Length = 290
Score = 28.5 bits (62), Expect = 1.4
Identities = 43/295 (14%), Positives = 92/295 (31%), Gaps = 21/295 (7%)
Query: 188 EKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSS-- 245
+K +F+ LLL I ++ + A + + + + + I WD ALG S
Sbjct: 3 QKARLFITHLLLLLFIAAIMFPLLMVVAISLRQGNFATGSLIPEQISWDHWKLALGFSVE 62
Query: 246 NVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIP 305
G+ P + + + + IG++ YA ++R K + I
Sbjct: 63 QADGRITPPPFPVLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIF 122
Query: 306 TIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSE 365
+ +L + + Y+ + + + + I +
Sbjct: 123 QMFPAVLSLVALYALFDRLGEYIPFIGLNTH----------GGVIFAYLGGIALHVWTIK 172
Query: 366 DVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAG 425
+I SL + + GAT + + V+ P + P +A +++ I E +
Sbjct: 173 GYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVAS---- 228
Query: 426 VAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIY 480
+ T+ V + L A L + + +
Sbjct: 229 -----LLLRDVNSYTLAVGMQQYLNPQNYLWGDFAAAAVMSALPITIVFLLAQRW 278
>g1dy9.1 b.47.1.3 (A:,C:) NS3 protease {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 187
Score = 26.5 bits (59), Expect = 5.5
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 404 GAILMTASRTIGETMIVVLAAGVAARLQFNPFESMTTITV 443
G +L + +G V GVA + F P ESM ++ +
Sbjct: 141 GPLLCPSGHVVGIFRAAVCTRGVAKAVDFIPVESMGSVVI 180
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.330 0.145 0.425
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,808,897
Number of extensions: 85698
Number of successful extensions: 264
Number of sequences better than 10.0: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 25
Length of query: 493
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 404
Effective length of database: 1,185,626
Effective search space: 478992904
Effective search space used: 478992904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.0 bits)