BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764486|ref|YP_003065119.2| ABC transporter, membrane
spanning protein [Candidatus Liberibacter asiaticus str. psy62]
         (493 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 493

 Score =  981 bits (2537), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/493 (100%), Positives = 493/493 (100%)

Query: 1   MLLLSGFSIIFLGLVSYFLGCLRARFLSKKNAIRLYSKESYYGVYVALYSIIPYIFIFLL 60
           MLLLSGFSIIFLGLVSYFLGCLRARFLSKKNAIRLYSKESYYGVYVALYSIIPYIFIFLL
Sbjct: 1   MLLLSGFSIIFLGLVSYFLGCLRARFLSKKNAIRLYSKESYYGVYVALYSIIPYIFIFLL 60

Query: 61  WFLFSPYIIDFQVSNSFSHYLNSLAEGDRQFSYSILHKIVDSLSSLDPDTKFKIQKGDGD 120
           WFLFSPYIIDFQVSNSFSHYLNSLAEGDRQFSYSILHKIVDSLSSLDPDTKFKIQKGDGD
Sbjct: 61  WFLFSPYIIDFQVSNSFSHYLNSLAEGDRQFSYSILHKIVDSLSSLDPDTKFKIQKGDGD 120

Query: 121 ISDLLRYQNVISGYVPSPWIIEAAFYQEILSRKSRILMNVCMFLFSFLGCSYAILRIKPS 180
           ISDLLRYQNVISGYVPSPWIIEAAFYQEILSRKSRILMNVCMFLFSFLGCSYAILRIKPS
Sbjct: 121 ISDLLRYQNVISGYVPSPWIIEAAFYQEILSRKSRILMNVCMFLFSFLGCSYAILRIKPS 180

Query: 181 FCARSAVEKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFP 240
           FCARSAVEKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFP
Sbjct: 181 FCARSAVEKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFP 240

Query: 241 ALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEM 300
           ALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEM
Sbjct: 241 ALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEM 300

Query: 301 LVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYV 360
           LVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYV
Sbjct: 301 LVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYV 360

Query: 361 SSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIV 420
           SSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIV
Sbjct: 361 SSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIV 420

Query: 421 VLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIY 480
           VLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIY
Sbjct: 421 VLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIY 480

Query: 481 AMYIMKKYQRKYE 493
           AMYIMKKYQRKYE
Sbjct: 481 AMYIMKKYQRKYE 493


>gi|254780705|ref|YP_003065118.1| phosphate ABC transporter, permease protein PstA [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 425

 Score = 67.4 bits (163), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 86/172 (50%), Gaps = 18/172 (10%)

Query: 257 LIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKL-RAVIKPITEMLVGIPTIVYGFFALS 315
           ++G+ Y+  I +  S P+G+  AIY+ E++ K    + ++     L  +P+IVYG    +
Sbjct: 207 VVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSA 266

Query: 316 LVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSL 375
           ++  F +                 +   + L  GL++ +M +P +   +   + ++P S+
Sbjct: 267 VLINFFK-----------------MPRSTALVGGLILALMTLPSIIIATGVALRTVPSSI 309

Query: 376 RDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVA 427
           R  +LGLGA++ +T+ + + P A P I     ++ +R +GET  ++    VA
Sbjct: 310 RSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVA 361


>gi|254780341|ref|YP_003064754.1| proline/glycine betaine ABC transporter, permease protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 281

 Score = 34.3 bits (77), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 32/159 (20%)

Query: 265 FIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDI 324
           FI+M   VP+G+L A Y       +  ++I+   + +  IPT VY   AL L G      
Sbjct: 105 FISMFIGVPLGVLAAWY------PRFYSIIRLFLDSMQTIPTFVYLIPALVLFG------ 152

Query: 325 SIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGA 384
                G++ G   + + +              IP    L+   I S P  L++ +   GA
Sbjct: 153 ----LGMVPGIVATIVFS--------------IPTSVRLTRLGIISTPPILKEAACAFGA 194

Query: 385 TRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLA 423
           T  +  + V  P A P I  +  +T +  +  +M+VV A
Sbjct: 195 TPFQVFRKVELPFAIPQIVAS--LTQTIMLSLSMVVVTA 231


>gi|254781113|ref|YP_003065526.1| amino acid ABC transporter (permease) [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 226

 Score = 29.6 bits (65), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 372 PRSLRDGSLGLGATRSETMKYVIFP-----AAFPGIAGAILMTASRTIGETMIVVLAAGV 426
           P+   D S  +G TR +T++++I P     +A P  +  I +  S ++  T+ +      
Sbjct: 118 PKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQT 177

Query: 427 AARLQFNPFESM 438
           A R+    ++ +
Sbjct: 178 AQRIVSTTYQPL 189


>gi|254780172|ref|YP_003064585.1| general L-amino acid transport system permease protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 386

 Score = 29.3 bits (64), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 16/153 (10%)

Query: 257 LIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSL 316
           L+ T  I F  ++ S+P+G+L+A+      P  LR       E+  G+P +   F A  +
Sbjct: 177 LLVTLVISFFGIIISMPLGILLALGRNSNIP-VLRYACITFIELFRGVPLVTVLFMASIM 235

Query: 317 VGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLR 376
           +  FL D                 +   +L A L +      Y++ +    + SI +   
Sbjct: 236 LPLFLPDTW---------------DVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQF 280

Query: 377 DGSLGLGATRSETMKYVIFPAAFPGIAGAILMT 409
           + +  LG +  + M+ +I P     +   I+ T
Sbjct: 281 EAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNT 313


>gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system enzyme IIC/IIB [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 461

 Score = 27.7 bits (60), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 11/87 (12%)

Query: 211 ISLFANTFKFFSIISATDFFFGIV------WDPRFPALGSSNVMGQFGLI-PLLIGTFYI 263
           I +FAN +  +   S   F  G++      W  +     S   M  + LI PL++  F +
Sbjct: 368 IGIFANHYGGWRAASKICFVMGVIEILGSIWAIQLAKTDSWMGMADWSLIAPLIMQGFKL 427

Query: 264 GFIAMLFSVPIGLLIAIYMAEYAPKKL 290
                 F +PIGLL  IYM  YA + L
Sbjct: 428 ---THFFIIPIGLLSVIYMV-YARRTL 450


>gi|254780627|ref|YP_003065040.1| chromosomal replication initiation protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 502

 Score = 26.6 bits (57), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 73  VSNSFSHYLNSLAEGDRQFSYSILHKIVDSLSSLDPDTKFKIQKG 117
           + + F H LNSL +  +Q   +   +    L SLDP  + ++Q G
Sbjct: 276 IQHEFCHLLNSLLDSAKQV-VAAADRPPSELESLDPRIRSRLQGG 319


>gi|254780349|ref|YP_003064762.1| serine hydroxymethyltransferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 433

 Score = 25.4 bits (54), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 14/84 (16%)

Query: 367 VISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMT--ASRTI--GETM---- 418
           V ++  +SLR    GL  T    +   I  A FPG+ G   M   A++ +  GE +    
Sbjct: 230 VTTTTHKSLRGPRGGLIMTNHADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEF 289

Query: 419 ------IVVLAAGVAARLQFNPFE 436
                 IV+ +  +A +LQF  F+
Sbjct: 290 RDYAKQIVLNSQALAKKLQFLGFD 313


>gi|255764497|ref|YP_003065010.2| ABC transporter permease [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 587

 Score = 25.0 bits (53), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 368 ISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASR----TIGETMIVV 421
           + +IPR L + S     +  +   Y+  P + PG+   ++M+ S      +   MIVV
Sbjct: 158 LCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVV 215


>gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 468

 Score = 24.6 bits (52), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 251 FGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIV 308
           F  I  +   ++IG  AMLF    G  I   +++   + L++V++ +    V +P+IV
Sbjct: 367 FPFISKIAKAYFIGNSAMLFFHHFGGKINSTLSKTLDQALKSVVRDVEN--VQLPSIV 422


>gi|254780398|ref|YP_003064811.1| dimethyladenosine transferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 284

 Score = 23.5 bits (49), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 94  SILHKIVDSLSSLDPDTKFKIQKGDGDISDLL 125
           +IL KI +S  SLD  T  +I  G G+++ +L
Sbjct: 34  NILKKIAESSGSLDGITVIEIGAGPGNLTQML 65


>gi|254781086|ref|YP_003065499.1| F0F1 ATP synthase subunit B' [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 176

 Score = 23.5 bits (49), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 238 RFPALGSSNVMGQFGLIPLLIGTFY 262
           RFP   +S  + QF  + ++ G FY
Sbjct: 12  RFPPFDTSTFLSQFFWLAIIFGIFY 36


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.330    0.145    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 302,643
Number of Sequences: 1233
Number of extensions: 12913
Number of successful extensions: 69
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 31
length of query: 493
length of database: 328,796
effective HSP length: 78
effective length of query: 415
effective length of database: 232,622
effective search space: 96538130
effective search space used: 96538130
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 40 (20.0 bits)