BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter asiaticus str. psy62] (493 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter asiaticus str. psy62] Length = 493 Score = 981 bits (2537), Expect = 0.0, Method: Compositional matrix adjust. Identities = 493/493 (100%), Positives = 493/493 (100%) Query: 1 MLLLSGFSIIFLGLVSYFLGCLRARFLSKKNAIRLYSKESYYGVYVALYSIIPYIFIFLL 60 MLLLSGFSIIFLGLVSYFLGCLRARFLSKKNAIRLYSKESYYGVYVALYSIIPYIFIFLL Sbjct: 1 MLLLSGFSIIFLGLVSYFLGCLRARFLSKKNAIRLYSKESYYGVYVALYSIIPYIFIFLL 60 Query: 61 WFLFSPYIIDFQVSNSFSHYLNSLAEGDRQFSYSILHKIVDSLSSLDPDTKFKIQKGDGD 120 WFLFSPYIIDFQVSNSFSHYLNSLAEGDRQFSYSILHKIVDSLSSLDPDTKFKIQKGDGD Sbjct: 61 WFLFSPYIIDFQVSNSFSHYLNSLAEGDRQFSYSILHKIVDSLSSLDPDTKFKIQKGDGD 120 Query: 121 ISDLLRYQNVISGYVPSPWIIEAAFYQEILSRKSRILMNVCMFLFSFLGCSYAILRIKPS 180 ISDLLRYQNVISGYVPSPWIIEAAFYQEILSRKSRILMNVCMFLFSFLGCSYAILRIKPS Sbjct: 121 ISDLLRYQNVISGYVPSPWIIEAAFYQEILSRKSRILMNVCMFLFSFLGCSYAILRIKPS 180 Query: 181 FCARSAVEKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFP 240 FCARSAVEKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFP Sbjct: 181 FCARSAVEKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFP 240 Query: 241 ALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEM 300 ALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEM Sbjct: 241 ALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEM 300 Query: 301 LVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYV 360 LVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYV Sbjct: 301 LVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYV 360 Query: 361 SSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIV 420 SSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIV Sbjct: 361 SSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIV 420 Query: 421 VLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIY 480 VLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIY Sbjct: 421 VLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIY 480 Query: 481 AMYIMKKYQRKYE 493 AMYIMKKYQRKYE Sbjct: 481 AMYIMKKYQRKYE 493 >gi|254780705|ref|YP_003065118.1| phosphate ABC transporter, permease protein PstA [Candidatus Liberibacter asiaticus str. psy62] Length = 425 Score = 67.4 bits (163), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 86/172 (50%), Gaps = 18/172 (10%) Query: 257 LIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKL-RAVIKPITEMLVGIPTIVYGFFALS 315 ++G+ Y+ I + S P+G+ AIY+ E++ K + ++ L +P+IVYG + Sbjct: 207 VVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSA 266 Query: 316 LVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSL 375 ++ F + + + L GL++ +M +P + + + ++P S+ Sbjct: 267 VLINFFK-----------------MPRSTALVGGLILALMTLPSIIIATGVALRTVPSSI 309 Query: 376 RDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVA 427 R +LGLGA++ +T+ + + P A P I ++ +R +GET ++ VA Sbjct: 310 RSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVA 361 >gi|254780341|ref|YP_003064754.1| proline/glycine betaine ABC transporter, permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 281 Score = 34.3 bits (77), Expect = 0.005, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 32/159 (20%) Query: 265 FIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDI 324 FI+M VP+G+L A Y + ++I+ + + IPT VY AL L G Sbjct: 105 FISMFIGVPLGVLAAWY------PRFYSIIRLFLDSMQTIPTFVYLIPALVLFG------ 152 Query: 325 SIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGA 384 G++ G + + + IP L+ I S P L++ + GA Sbjct: 153 ----LGMVPGIVATIVFS--------------IPTSVRLTRLGIISTPPILKEAACAFGA 194 Query: 385 TRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLA 423 T + + V P A P I + +T + + +M+VV A Sbjct: 195 TPFQVFRKVELPFAIPQIVAS--LTQTIMLSLSMVVVTA 231 >gi|254781113|ref|YP_003065526.1| amino acid ABC transporter (permease) [Candidatus Liberibacter asiaticus str. psy62] Length = 226 Score = 29.6 bits (65), Expect = 0.11, Method: Compositional matrix adjust. Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 5/72 (6%) Query: 372 PRSLRDGSLGLGATRSETMKYVIFP-----AAFPGIAGAILMTASRTIGETMIVVLAAGV 426 P+ D S +G TR +T++++I P +A P + I + S ++ T+ + Sbjct: 118 PKGQWDASYAIGLTRKQTIRHIILPQTITTSAVPLSSEFISILKSTSVASTITIPEIFQT 177 Query: 427 AARLQFNPFESM 438 A R+ ++ + Sbjct: 178 AQRIVSTTYQPL 189 >gi|254780172|ref|YP_003064585.1| general L-amino acid transport system permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 386 Score = 29.3 bits (64), Expect = 0.14, Method: Compositional matrix adjust. Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 16/153 (10%) Query: 257 LIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSL 316 L+ T I F ++ S+P+G+L+A+ P LR E+ G+P + F A + Sbjct: 177 LLVTLVISFFGIIISMPLGILLALGRNSNIP-VLRYACITFIELFRGVPLVTVLFMASIM 235 Query: 317 VGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLR 376 + FL D + +L A L + Y++ + + SI + Sbjct: 236 LPLFLPDTW---------------DVDKLLRALLGVSAFASAYIAEVLRGGLQSISKGQF 280 Query: 377 DGSLGLGATRSETMKYVIFPAAFPGIAGAILMT 409 + + LG + + M+ +I P + I+ T Sbjct: 281 EAANSLGLSYLQKMRLIIMPQVIKRVIPGIVNT 313 >gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system enzyme IIC/IIB [Candidatus Liberibacter asiaticus str. psy62] Length = 461 Score = 27.7 bits (60), Expect = 0.39, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 11/87 (12%) Query: 211 ISLFANTFKFFSIISATDFFFGIV------WDPRFPALGSSNVMGQFGLI-PLLIGTFYI 263 I +FAN + + S F G++ W + S M + LI PL++ F + Sbjct: 368 IGIFANHYGGWRAASKICFVMGVIEILGSIWAIQLAKTDSWMGMADWSLIAPLIMQGFKL 427 Query: 264 GFIAMLFSVPIGLLIAIYMAEYAPKKL 290 F +PIGLL IYM YA + L Sbjct: 428 ---THFFIIPIGLLSVIYMV-YARRTL 450 >gi|254780627|ref|YP_003065040.1| chromosomal replication initiation protein [Candidatus Liberibacter asiaticus str. psy62] Length = 502 Score = 26.6 bits (57), Expect = 1.1, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 73 VSNSFSHYLNSLAEGDRQFSYSILHKIVDSLSSLDPDTKFKIQKG 117 + + F H LNSL + +Q + + L SLDP + ++Q G Sbjct: 276 IQHEFCHLLNSLLDSAKQV-VAAADRPPSELESLDPRIRSRLQGG 319 >gi|254780349|ref|YP_003064762.1| serine hydroxymethyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 433 Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 14/84 (16%) Query: 367 VISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMT--ASRTI--GETM---- 418 V ++ +SLR GL T + I A FPG+ G M A++ + GE + Sbjct: 230 VTTTTHKSLRGPRGGLIMTNHADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEF 289 Query: 419 ------IVVLAAGVAARLQFNPFE 436 IV+ + +A +LQF F+ Sbjct: 290 RDYAKQIVLNSQALAKKLQFLGFD 313 >gi|255764497|ref|YP_003065010.2| ABC transporter permease [Candidatus Liberibacter asiaticus str. psy62] Length = 587 Score = 25.0 bits (53), Expect = 3.0, Method: Compositional matrix adjust. Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Query: 368 ISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASR----TIGETMIVV 421 + +IPR L + S + + Y+ P + PG+ ++M+ S + MIVV Sbjct: 158 LCNIPRDLEEVSRSFRLSGWQKFWYLGVPFSMPGLVWNMMMSMSGGWFFVVASEMIVV 215 >gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 468 Score = 24.6 bits (52), Expect = 3.9, Method: Compositional matrix adjust. Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Query: 251 FGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIV 308 F I + ++IG AMLF G I +++ + L++V++ + V +P+IV Sbjct: 367 FPFISKIAKAYFIGNSAMLFFHHFGGKINSTLSKTLDQALKSVVRDVEN--VQLPSIV 422 >gi|254780398|ref|YP_003064811.1| dimethyladenosine transferase [Candidatus Liberibacter asiaticus str. psy62] Length = 284 Score = 23.5 bits (49), Expect = 7.7, Method: Compositional matrix adjust. Identities = 13/32 (40%), Positives = 20/32 (62%) Query: 94 SILHKIVDSLSSLDPDTKFKIQKGDGDISDLL 125 +IL KI +S SLD T +I G G+++ +L Sbjct: 34 NILKKIAESSGSLDGITVIEIGAGPGNLTQML 65 >gi|254781086|ref|YP_003065499.1| F0F1 ATP synthase subunit B' [Candidatus Liberibacter asiaticus str. psy62] Length = 176 Score = 23.5 bits (49), Expect = 7.9, Method: Compositional matrix adjust. Identities = 9/25 (36%), Positives = 14/25 (56%) Query: 238 RFPALGSSNVMGQFGLIPLLIGTFY 262 RFP +S + QF + ++ G FY Sbjct: 12 RFPPFDTSTFLSQFFWLAIIFGIFY 36 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.330 0.145 0.425 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 302,643 Number of Sequences: 1233 Number of extensions: 12913 Number of successful extensions: 69 Number of sequences better than 100.0: 24 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 15 Number of HSP's that attempted gapping in prelim test: 50 Number of HSP's gapped (non-prelim): 31 length of query: 493 length of database: 328,796 effective HSP length: 78 effective length of query: 415 effective length of database: 232,622 effective search space: 96538130 effective search space used: 96538130 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 40 (20.0 bits)