Query         gi|255764487|ref|YP_003065115.2| heat shock protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 219
No_of_seqs    122 out of 2077
Neff          7.2 
Searched_HMMs 33803
Date          Wed Jun  1 14:33:21 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764487.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1dkg_A Nucleotide exchange fa  99.8 9.1E-21 2.7E-25  152.9   3.9   60  131-190     1-60  (60)
  2 >3a6m_A Protein GRPE, HSP-70 c  99.8 5.8E-20 1.7E-24  147.7   5.1   80   41-131     2-81  (81)
  3 >3a6m_A Protein GRPE, HSP-70 c  99.8 3.7E-19 1.1E-23  142.6   4.1   60  132-194     1-60  (62)
  4 >2p3y_A Hypothetical protein V  55.0      12 0.00035   17.9   3.1   34  111-148    21-54  (123)
  5 >1deq_A Fibrinogen (alpha chai  29.2      38  0.0011   14.7   7.4   43   29-71      9-51  (288)
  6 >1ua4_A Glucokinase, ADP-depen  28.9      38  0.0011   14.7   2.3   22  115-136   187-208 (323)
  7 >1wbe_A GLTP, glycolipid trans  27.0      42  0.0012   14.4   5.8   64   71-137   145-208 (209)
  8 >2i3f_A Glycolipid transfer-li  24.3      47  0.0014   14.1   5.7   66   71-143   142-207 (224)
  9 >1svp_A Sindbis virus capsid p  22.7      32 0.00095   15.2   1.0   16  170-185    22-39  (72)
 10 >1gc5_A ADP-dependent glucokin  21.8      52  0.0015   13.8   2.3  116   73-192   157-315 (336)
 11 >1vcp_A Semliki forest virus c  21.6      28 0.00082   15.6   0.4   15  170-184    13-29  (63)
 12 >1ep5_B Capsid protein C, coat  20.7      38  0.0011   14.7   1.0   15  170-184    20-36  (70)
 13 >1t1d_A Protein (potassium cha  20.5      13 0.00038   17.7  -1.5   13  171-183    10-22  (50)
 14 >1kil_E Complexin I snare-comp  20.0      57  0.0017   13.6   5.1   36   26-61      8-43  (49)

No 1  
>>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} (A:138-197)
Probab=99.81  E-value=9.1e-21  Score=152.88  Aligned_cols=60  Identities=33%  Similarity=0.638  Sum_probs=58.4

Q ss_pred             HHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEECCCEEECCEEEECCEEEEECCCC
Q ss_conf             100013688875700577752243458977459999708817756782000248604888
Q gi|255764487|r  131 GVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVLRPALVSISKGKT  190 (219)
Q Consensus       131 GV~~i~~~G~~FDP~~HeAi~~~~~~~~~~~tVi~v~q~GY~l~~rvlRpA~V~Vsk~~~  190 (219)
                      ||++|+++|++|||++||||+++++++.++|||++|+|+||+|+|||||||+|+|||+++
T Consensus         1 Gi~~i~~~G~~FDp~~HeAv~~~~~~~~~~~~V~~v~~~GY~~~~rvlRpA~V~V~k~~a   60 (60)
T 1dkg_A            1 GVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKAKA   60 (60)
T ss_dssp             TEEEECCCSSBCCTTSEEEEEEEECSSSCTTBEEEEEECEEEETTEEEECEEEEEEECCC
T ss_pred             CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCEEECCEECCCCEEEEECCCC
T ss_conf             983236578888976124410305899995968999717848899972074699917999


No 2  
>>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, cytoplasm, stress response; 3.23A {Thermus thermophilus HB8} (A:35-115)
Probab=99.79  E-value=5.8e-20  Score=147.72  Aligned_cols=80  Identities=33%  Similarity=0.545  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             99999999999889999999999999999964243343203157899999972122233210111278998764479999
Q gi|255764487|r   41 EEFRDKYLRVIAEMENLRRRTDREKKDAQSYSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTR  120 (219)
Q Consensus        41 ~elkdk~lR~~AE~eN~rkR~~ke~~~~~~~a~~~~~~~lL~v~D~lerAl~~~~~~~~~~~~~~~~~~~~~~~Gi~mi~  120 (219)
                      .+++++|+|++|||+|||||+++++++++.|++++|+++||||+|||+||+.+++.+           ..++++||.||+
T Consensus         2 ~e~~~~~~r~~Ae~eN~rkR~~ke~e~~~~~a~~~~~~~lLpv~D~lerAl~~~~~~-----------~~~~~~Gi~mi~   70 (81)
T 3a6m_A            2 KGLKDKYLRLLADFDNYRKRMEEELKAREREGVLKALRALLPVLDDLDRALEFAEAS-----------PESIRQGVRAIR   70 (81)
T ss_dssp             SSHHHHHHTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGC-----------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHH
T ss_conf             999999999999999999999999999999989999999988876888887754103-----------210246799999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999986411
Q gi|255764487|r  121 REMMSTLERYG  131 (219)
Q Consensus       121 k~l~~~L~~~G  131 (219)
                      ++|.++|+++|
T Consensus        71 ~~l~~~l~k~G   81 (81)
T 3a6m_A           71 DGFFRILAGLG   81 (81)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHCC
T ss_conf             99999998679


No 3  
>>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, cytoplasm, stress response; 3.23A {Thermus thermophilus HB8} (A:116-177)
Probab=99.76  E-value=3.7e-19  Score=142.57  Aligned_cols=60  Identities=27%  Similarity=0.525  Sum_probs=55.6

Q ss_pred             HCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEECCCEEECCEEEECCEEEEECCCCCCCC
Q ss_conf             000136888757005777522434589774599997088177567820002486048888887
Q gi|255764487|r  132 VKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVLRPALVSISKGKTQNPT  194 (219)
Q Consensus       132 V~~i~~~G~~FDP~~HeAi~~~~~~~~~~~tVi~v~q~GY~l~~rvlRpA~V~Vsk~~~~~~~  194 (219)
                      |++|+++|+.|||++||||+++++   ++|||++|+|+||+|+|||||||+|+||+++.....
T Consensus         1 v~~i~~~G~~FDP~~HeAv~~~~~---~~~~V~~v~~~GY~~~~rvlRpA~V~V~k~~~~~~~   60 (62)
T 3a6m_A            1 VEEVPGEGEAFDPRYHEAVGLLPG---EPGKVAKVFQRGFRMGEALVRPARVAVGEEKREEAD   60 (62)
T ss_dssp             CEECCCTTSBCCTTTEEEEEEEES---STTBEEEEEECCEEETTEEEECEEEEEEECCC----
T ss_pred             EEEECCCCCCCCCCHHEEEEEEEC---CCCEEEEEEECCEEECCEEEECCEEEECCCCCCCCC
T ss_conf             067589999679434204355008---949589997679288999830656897889987777


No 4  
>>2p3y_A Hypothetical protein VPA0735; structural genomics, PSI-2, protein structure initiative; 1.80A {Vibrio parahaemolyticus rimd 2210633} (A:40-65,A:256-352)
Probab=54.96  E-value=12  Score=17.92  Aligned_cols=34  Identities=32%  Similarity=0.510  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf             87644799999999998641100013688875700577
Q gi|255764487|r  111 SLIEGIEMTRREMMSTLERYGVKKIDAKDQKFNPNMHQ  148 (219)
Q Consensus       111 ~~~~Gi~mi~k~l~~~L~~~GV~~i~~~G~~FDP~~He  148 (219)
                      .++=|+.-+-+.|..+|...||+    +|++|.|.-+.
T Consensus        21 ~~~~~~~~~Dpem~G~LasIGIe----KGKPF~PDar~   54 (123)
T 2p3y_A           21 AYLWGIEERDRFVXAQLKFLGIE----KGKPFNPTEEQ   54 (123)
T ss_dssp             HHHHTHCGGGHHHHHHHGGGTCC----TTSCCCCCHHH
T ss_pred             HHHHHHCCCCHHHHHHHHHCCCC----CCCCCCCCHHH
T ss_conf             99987883179999999971887----89989966566


No 5  
>>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} (A:103-390)
Probab=29.22  E-value=38  Score=14.69  Aligned_cols=43  Identities=16%  Similarity=0.206  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3103999999999999999999988999999999999999996
Q gi|255764487|r   29 EINIPEESLNQSEEFRDKYLRVIAEMENLRRRTDREKKDAQSY   71 (219)
Q Consensus        29 ~~~~~e~~~~e~~elkdk~lR~~AE~eN~rkR~~ke~~~~~~~   71 (219)
                      ....++++..++++++.++.-..+.++.++++++..+.+.+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~   51 (288)
T 1deq_A            9 FKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRL   51 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999999999999999999


No 6  
>>1ua4_A Glucokinase, ADP-dependent glucokinase; transferase; HET: GLC BGC AMP; 1.90A {Pyrococcus furiosus} (A:1-28,A:114-168,A:216-455)
Probab=28.90  E-value=38  Score=14.67  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             4799999999998641100013
Q gi|255764487|r  115 GIEMTRREMMSTLERYGVKKID  136 (219)
Q Consensus       115 Gi~mi~k~l~~~L~~~GV~~i~  136 (219)
                      .+-++...+..+|+++||++|.
T Consensus       187 e~~~v~d~~~~L~~~~~L~RIh  208 (323)
T 1ua4_A          187 DPIAVTEAMLKLAKKTGVKRIH  208 (323)
T ss_dssp             CHHHHHHHHHHHHHHHCCSEEE
T ss_pred             CHHHHHHHHHHHHHHCCCCEEE
T ss_conf             3489999999998866997899


No 7  
>>1wbe_A GLTP, glycolipid transfer protein; acetylation, lipid transport; HET: DKA; 1.36A {Bos taurus} PDB: 1tfj_A* 2bv7_A* 1swx_A 1sx6_A* 2euk_A* 2eum_A* 2evd_A* 2evl_A* 2evs_A* 2evt_A (A:)
Probab=26.96  E-value=42  Score=14.43  Aligned_cols=64  Identities=11%  Similarity=0.020  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             6424334320315789999997212223321011127899876447999999999986411000136
Q gi|255764487|r   71 YSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTRREMMSTLERYGVKKIDA  137 (219)
Q Consensus        71 ~a~~~~~~~lL~v~D~lerAl~~~~~~~~~~~~~~~~~~~~~~~Gi~mi~k~l~~~L~~~GV~~i~~  137 (219)
                      .....++..++|....|-..+....++.   +...-..+..++..++.++..+...|.++|+..-..
T Consensus       145 r~~~~~a~~~~P~R~~fl~~l~~~~~~~---~e~~~~~l~~~~~~~~~v~~~i~~~y~~~~L~~~~k  208 (209)
T 1wbe_A          145 QKIFQAALYAAPYKSDFLKALSKGQNVT---EEECLEKVRLFLVNYTATIDVIYEMYTRMNAELNYK  208 (209)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHTTTCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             9999999983897999999982688604---899999999999999999999999999869997677


No 8  
>>2i3f_A Glycolipid transfer-like protein; GLTP superfamily, GLTP-like, protein structure initiative, PSI; 1.38A {Galdieria sulphuraria} PDB: 2q52_A (A:)
Probab=24.31  E-value=47  Score=14.13  Aligned_cols=66  Identities=5%  Similarity=0.013  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             6424334320315789999997212223321011127899876447999999999986411000136888757
Q gi|255764487|r   71 YSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTRREMMSTLERYGVKKIDAKDQKFN  143 (219)
Q Consensus        71 ~a~~~~~~~lL~v~D~lerAl~~~~~~~~~~~~~~~~~~~~~~~Gi~mi~k~l~~~L~~~GV~~i~~~G~~FD  143 (219)
                      .....++..++|....|-..+....       ......+..++..+..++..+...|.++|+.....-.+.|-
T Consensus       142 r~~~~lA~~~~PsR~~fl~~l~~~~-------e~~~~~l~~~~~~~~~i~~~i~~~y~~~~L~~lp~~~~~~~  207 (224)
T 2i3f_A          142 QKVFWGGVKLAPSRERFYRKLHPDL-------NIAKAKIEEFLIELHDPLCCIVQFFFQRELEDQCWGDEVYQ  207 (224)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHCSSH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCCTTTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             9999999987998999999976778-------89999999999999999999999999779943220389985


No 9  
>>1svp_A Sindbis virus capsid protein; chymotrypsin-like serine, mutant, coat protein, viral protein; 2.00A {Sindbis virus} (A:1-72)
Probab=22.74  E-value=32  Score=15.16  Aligned_cols=16  Identities=31%  Similarity=0.511  Sum_probs=12.8

Q ss_pred             CE--EECCEEEECCEEEE
Q ss_conf             81--77567820002486
Q gi|255764487|r  170 GY--AINERVLRPALVSI  185 (219)
Q Consensus       170 GY--~l~~rvlRpA~V~V  185 (219)
                      ||  .++|||.+|+.|.=
T Consensus        22 GyA~~vggkv~KP~HVkG   39 (72)
T 1svp_A           22 GHALAMEGKVMKPLHVKG   39 (72)
T ss_dssp             EEEEEETTEEEEETTCCS
T ss_pred             EEEEEECCEEECCCCCCC
T ss_conf             888997476402320454


No 10 
>>1gc5_A ADP-dependent glucokinase; ALFA/beta sandwichs, induced-fitting, transferase; HET: ADP; 2.30A {Thermococcus litoralis} (A:1-37,A:122-176,A:224-467)
Probab=21.80  E-value=52  Score=13.81  Aligned_cols=116  Identities=12%  Similarity=0.049  Sum_probs=59.5

Q ss_pred             HHHHHHHHCCHHHHH---HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--C---------
Q ss_conf             243343203157899---99997212223321011127899876447999999999986411000136--8---------
Q gi|255764487|r   73 IAKFARDMLSVSDNL---SRALDSAPLDLANSEKKSESVLKSLIEGIEMTRREMMSTLERYGVKKIDA--K---------  138 (219)
Q Consensus        73 ~~~~~~~lL~v~D~l---erAl~~~~~~~~~~~~~~~~~~~~~~~Gi~mi~k~l~~~L~~~GV~~i~~--~---------  138 (219)
                      ..+.+.++||.+|++   |-=|.+....    ..+..-...-+...+..+...+..+|+++|+++|..  .         
T Consensus       157 l~~~i~~ilp~VDSiGmNEqELa~l~~~----lg~~~ls~~~~~p~i~~v~d~~~~L~~~~~L~RIhvHTl~y~l~it~~  232 (336)
T 1gc5_A          157 VREALVELLPKFTSVGLNEVELASIMEI----IGDEELAKEVLEGHIFSVIDAMNVLMDETGIERIHFHTYGYYLALTQY  232 (336)
T ss_dssp             HHHHHHHHGGGCSEEEECHHHHHHHHHH----TTCHHHHHHHHTTCHHHHHHHHHHHHHHHCCSEEEEEETTEEEEEESS
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHH----HCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH
T ss_conf             9999999714412157208889999998----563999999872433338878887641246405886400333134764


Q ss_pred             ----------------------CCCCCCCHHHHHHCCCCCCCC-----C-CEEEEEECCCEEE-CCEEEECCEEEEECCC
Q ss_conf             ----------------------887570057775224345897-----7-4599997088177-5678200024860488
Q gi|255764487|r  139 ----------------------DQKFNPNMHQAMFEEPHDTVP-----A-NTIIKVVQDGYAI-NERVLRPALVSISKGK  189 (219)
Q Consensus       139 ----------------------G~~FDP~~HeAi~~~~~~~~~-----~-~tVi~v~q~GY~l-~~rvlRpA~V~Vsk~~  189 (219)
                                            |+..+|...+..+.+|.+.+-     . -........||.. .+--+-.+=|.|.+.|
T Consensus       233 ~w~~~~~AL~~gsl~A~~~A~~g~~~~~~~~~~~l~~p~~~~~~~~~e~~~~~~~~~~~pv~~w~~~~i~~~P~lvv~~P  312 (336)
T 1gc5_A          233 RGEEVRDALLFASLAAAAKAMKGNLERIEQIRDALSVPTNERAIVLEEELEKEFTEFENGLIDMVDRQLAFVPTKIVASP  312 (336)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHSSCCSTTGGGGGGGSCCCHHHHHHHHHHHHHSEEEETTEEECSSCEEEEEECCCCSSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEECCC
T ss_conf             21888999999999999998424599999998752488864000008989888888742478877623323430022178


Q ss_pred             CCC
Q ss_conf             888
Q gi|255764487|r  190 TQN  192 (219)
Q Consensus       190 ~~~  192 (219)
                      ...
T Consensus       313 ~~T  315 (336)
T 1gc5_A          313 KST  315 (336)
T ss_dssp             SCC
T ss_pred             CCC
T ss_conf             654


No 11 
>>1vcp_A Semliki forest virus capsid protein; virus coat protein, polyprotein, transmembrane, glycoprotein, nucleocapsid protein, viral protein; 3.00A {Semliki forest virus} (A:1-63)
Probab=21.63  E-value=28  Score=15.60  Aligned_cols=15  Identities=40%  Similarity=0.946  Sum_probs=12.1

Q ss_pred             CE--EECCEEEECCEEE
Q ss_conf             81--7756782000248
Q gi|255764487|r  170 GY--AINERVLRPALVS  184 (219)
Q Consensus       170 GY--~l~~rvlRpA~V~  184 (219)
                      ||  .++|||.||+.|.
T Consensus        13 GyAc~vg~kv~kP~HVk   29 (63)
T 1vcp_A           13 GYACLVGDKVMKPAHVK   29 (63)
T ss_dssp             EEEECBTTEEBCBTTCC
T ss_pred             EEEEEECCEEECCCCCC
T ss_conf             88999757630231025


No 12 
>>1ep5_B Capsid protein C, coat protein C; beta barrel, hydrolase; 2.30A {Venezuelan equine encephalitis virus} (B:1-70)
Probab=20.71  E-value=38  Score=14.73  Aligned_cols=15  Identities=33%  Similarity=0.822  Sum_probs=12.2

Q ss_pred             CE--EECCEEEECCEEE
Q ss_conf             81--7756782000248
Q gi|255764487|r  170 GY--AINERVLRPALVS  184 (219)
Q Consensus       170 GY--~l~~rvlRpA~V~  184 (219)
                      ||  .++|||.||+.|.
T Consensus        20 GyA~~vggkv~KPlHVk   36 (70)
T 1ep5_B           20 GYACVVGGKLFRPMHVE   36 (70)
T ss_dssp             EEEEEETTEEEEETTCC
T ss_pred             EEEEEECCEEECCCCCC
T ss_conf             78999747530232035


No 13 
>>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} (A:51-100)
Probab=20.47  E-value=13  Score=17.73  Aligned_cols=13  Identities=38%  Similarity=0.577  Sum_probs=7.1

Q ss_pred             EEECCEEEECCEE
Q ss_conf             1775678200024
Q gi|255764487|r  171 YAINERVLRPALV  183 (219)
Q Consensus       171 Y~l~~rvlRpA~V  183 (219)
                      |.-+||+.||.-|
T Consensus        10 YQs~G~L~RP~~V   22 (50)
T 1t1d_A           10 YQSGGRLRRPVNV   22 (50)
T ss_dssp             HHTTSCCCCCTTS
T ss_pred             HHCCCCCCCCCCC
T ss_conf             9338987888864


No 14 
>>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} (E:)
Probab=20.01  E-value=57  Score=13.58  Aligned_cols=36  Identities=31%  Similarity=0.311  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             232310399999999999999999998899999999
Q gi|255764487|r   26 EKSEINIPEESLNQSEEFRDKYLRVIAEMENLRRRT   61 (219)
Q Consensus        26 ~~~~~~~~e~~~~e~~elkdk~lR~~AE~eN~rkR~   61 (219)
                      ........+.+..+.++.+.+|.+.-|+-+..|...
T Consensus         8 ~kkeeE~qealrq~EeeRkaK~akmEaERE~~RQgI   43 (49)
T 1kil_E            8 AKKEEERQEALRQAEEERKAKYAKMEAEREVMRQGI   43 (49)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             888899999999889999999998999999999987


Done!