Query         gi|255764487|ref|YP_003065115.2| heat shock protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 219
No_of_seqs    122 out of 2077
Neff          7.2 
Searched_HMMs 13730
Date          Wed Jun  1 07:44:15 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764487.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1dkga1 b.73.1.1 (A:139-197) H  99.8 1.8E-20 1.3E-24  148.5   3.8   59  132-190     1-59  (59)
  2 d2j01s1 c.55.4.1 (S:23-108) Ri  23.8     6.3 0.00046   17.2  -0.5   31  118-177    46-76  (86)
  3 d1ep5a_ b.47.1.3 (A:) Viral ca  18.9      18  0.0013   14.3   1.0   13  172-184    23-35  (156)
  4 d1wyka_ b.47.1.3 (A:) Viral ca  18.3      19  0.0014   14.2   1.0   16  170-185    15-32  (152)
  5 d1swxa_ a.224.1.1 (A:) Glycoli  17.1      27   0.002   13.2   5.4   63   71-136   138-200 (202)
  6 d2zjrl1 c.55.4.1 (L:8-111) Rib  16.7     8.9 0.00065   16.2  -1.0   10  168-177    84-93  (104)
  7 d1pzqa_ a.34.3.1 (A:) Erythron  15.7      29  0.0021   12.9   3.2   16   82-97     12-27  (60)
  8 d1eg7a_ c.37.1.10 (A:) Formylt  15.2      30  0.0022   12.9   3.3   62   89-153   329-392 (549)
  9 d1vcpa_ b.47.1.3 (A:) Viral ca  13.9      21  0.0015   13.9   0.3   12  173-184    18-29  (149)
 10 d2gycm1 c.55.4.1 (M:3-115) Rib  13.3      13 0.00092   15.3  -0.9   35  114-177    67-101 (113)

No 1  
>d1dkga1 b.73.1.1 (A:139-197) Head domain of nucleotide exchange factor GrpE {Escherichia coli [TaxId: 562]}
Probab=99.79  E-value=1.8e-20  Score=148.51  Aligned_cols=59  Identities=32%  Similarity=0.611  Sum_probs=56.9

Q ss_pred             HCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEECCCEEECCEEEECCEEEEECCCC
Q ss_conf             00013688875700577752243458977459999708817756782000248604888
Q gi|255764487|r  132 VKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVLRPALVSISKGKT  190 (219)
Q Consensus       132 V~~i~~~G~~FDP~~HeAi~~~~~~~~~~~tVi~v~q~GY~l~~rvlRpA~V~Vsk~~~  190 (219)
                      |+.|+++|++|||++||||+++++++.++|||++|+|+||+|+|||||||+|+|||+|+
T Consensus         1 ve~i~~~g~~FDP~~HeAv~~~~~~~~~~~~I~~v~~~GY~~~~rvlRpA~V~V~k~~s   59 (59)
T d1dkga1           1 VEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKAKA   59 (59)
T ss_dssp             EEEECCCSSBCCTTSEEEEEEEECSSSCTTBEEEEEECEEEETTEEEECEEEEEEECCC
T ss_pred             CCEECCCCCCCCHHHCEEEEEECCCCCCCCEEEEEEECCCEECCEEEECCEEEEECCCC
T ss_conf             92507789988977910705865799998989999807949899993164899945899


No 2  
>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]}
Probab=23.81  E-value=6.3  Score=17.21  Aligned_cols=31  Identities=23%  Similarity=0.453  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEECCCEEECCEE
Q ss_conf             999999999864110001368887570057775224345897745999970881775678
Q gi|255764487|r  118 MTRREMMSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERV  177 (219)
Q Consensus       118 mi~k~l~~~L~~~GV~~i~~~G~~FDP~~HeAi~~~~~~~~~~~tVi~v~q~GY~l~~rv  177 (219)
                      .+-+.|-..+.+.||+.+     .||                        +.||+|||||
T Consensus        46 ~vG~~la~~ak~~gI~~v-----~FD------------------------R~g~~YHGrv   76 (86)
T d2j01s1          46 QVGRALAEKALALGIKQV-----AFD------------------------RGPYKYHGRV   76 (86)
T ss_dssp             HHHHHHHHHHHHTSCCCC-----BCC------------------------CSTTCSSSSC
T ss_pred             HHHHHHHHHHHHCCCCEE-----EEE------------------------CCCCCCCCHH
T ss_conf             999999999998799889-----994------------------------8997220299


No 3  
>d1ep5a_ b.47.1.3 (A:) Viral capsid protein {Venezuelan equine encephalitis virus [TaxId: 11036]}
Probab=18.92  E-value=18  Score=14.33  Aligned_cols=13  Identities=23%  Similarity=0.580  Sum_probs=10.1

Q ss_pred             EECCEEEECCEEE
Q ss_conf             7756782000248
Q gi|255764487|r  172 AINERVLRPALVS  184 (219)
Q Consensus       172 ~l~~rvlRpA~V~  184 (219)
                      .+++||++||.|+
T Consensus        23 lvg~kv~KPaHVk   35 (156)
T d1ep5a_          23 VVGGKLFRPMHVE   35 (156)
T ss_dssp             EETTEEEEETTCC
T ss_pred             EECCEEECCCCCC
T ss_conf             8757530332045


No 4  
>d1wyka_ b.47.1.3 (A:) Viral capsid protein {Sindbis virus [TaxId: 11034]}
Probab=18.31  E-value=19  Score=14.19  Aligned_cols=16  Identities=31%  Similarity=0.511  Sum_probs=11.7

Q ss_pred             CE--EECCEEEECCEEEE
Q ss_conf             81--77567820002486
Q gi|255764487|r  170 GY--AINERVLRPALVSI  185 (219)
Q Consensus       170 GY--~l~~rvlRpA~V~V  185 (219)
                      ||  .+++||.+||.|.=
T Consensus        15 GYA~lvg~kv~KPaHVkG   32 (152)
T d1wyka_          15 GHALAMEGKVMKPLHVKG   32 (152)
T ss_dssp             EEEEEETTEEEEETTCCS
T ss_pred             EEEEEECCEEECCCCCCC
T ss_conf             789997586302320353


No 5  
>d1swxa_ a.224.1.1 (A:) Glycolipid transfer protein, GLTP {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.08  E-value=27  Score=13.15  Aligned_cols=63  Identities=10%  Similarity=0.011  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             642433432031578999999721222332101112789987644799999999998641100013
Q gi|255764487|r   71 YSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTRREMMSTLERYGVKKID  136 (219)
Q Consensus        71 ~a~~~~~~~lL~v~D~lerAl~~~~~~~~~~~~~~~~~~~~~~~Gi~mi~k~l~~~L~~~GV~~i~  136 (219)
                      .+...++..++|....|-..+....+..   ....-..+..++..+.-++..+...++++|+..-.
T Consensus       138 r~~~~~A~~~~P~R~~fl~~l~~~~~~~---~~~~~~~l~~~~~~~~~~~~~i~~ly~~~~L~~~~  200 (202)
T d1swxa_         138 QKIFQAALYAAPYKSDFLKALSKGQNVT---EEECLEKIRLFLVNYTATIDVIYEMYTQMNAELNY  200 (202)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHTC----C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             9999999981797999999983698424---89999999999999999999999999986999778


No 6  
>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=16.69  E-value=8.9  Score=16.23  Aligned_cols=10  Identities=30%  Similarity=0.574  Sum_probs=7.3

Q ss_pred             CCCEEECCEE
Q ss_conf             0881775678
Q gi|255764487|r  168 QDGYAINERV  177 (219)
Q Consensus       168 q~GY~l~~rv  177 (219)
                      +.||+|||||
T Consensus        84 R~g~~YHGrv   93 (104)
T d2zjrl1          84 RGSYKYHGRV   93 (104)
T ss_dssp             CCSSCSCSHH
T ss_pred             CCCCCCHHHH
T ss_conf             8997321399


No 7  
>d1pzqa_ a.34.3.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=15.69  E-value=29  Score=12.94  Aligned_cols=16  Identities=25%  Similarity=0.414  Sum_probs=12.6

Q ss_pred             CHHHHHHHHHHHCCCC
Q ss_conf             1578999999721222
Q gi|255764487|r   82 SVSDNLSRALDSAPLD   97 (219)
Q Consensus        82 ~v~D~lerAl~~~~~~   97 (219)
                      .-+|.|+|||.+.+..
T Consensus        12 ~rld~le~al~al~~~   27 (60)
T d1pzqa_          12 DRLDELEKALEALSAE   27 (60)
T ss_dssp             HHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHCCHH
T ss_conf             6588999999836521


No 8  
>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]}
Probab=15.21  E-value=30  Score=12.86  Aligned_cols=62  Identities=18%  Similarity=0.209  Sum_probs=39.4

Q ss_pred             HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCC-CCHHHHHHCC
Q ss_conf             9997212223321011127899876447999999999986411000136888-757-0057775224
Q gi|255764487|r   89 RALDSAPLDLANSEKKSESVLKSLIEGIEMTRREMMSTLERYGVKKIDAKDQ-KFN-PNMHQAMFEE  153 (219)
Q Consensus        89 rAl~~~~~~~~~~~~~~~~~~~~~~~Gi~mi~k~l~~~L~~~GV~~i~~~G~-~FD-P~~HeAi~~~  153 (219)
                      |||....--  .......+.+..+..|+.-+.+++.++ ++|||..+-+++. ..| +...+++...
T Consensus       329 RALK~HGG~--~~~~l~~eNl~Al~~G~~NL~rHIeNi-~~fGlpvVVAIN~F~tDTd~Ei~~i~~~  392 (549)
T d1eg7a_         329 RALKMHGGV--PKSDLATENLEALREGFANLEKHIENI-GKFGVPAVVAINAFPTDTEAELNLLYEL  392 (549)
T ss_dssp             HHHHHTTTC--CGGGTTSCCHHHHHHHHHHHHHHHHHH-HTTTCCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             HHHHHCCCC--CHHHCCCCCHHHHHHHHHHHHHHHHHH-HHCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf             345545799--948817325999998877799998752-2228974998525775314478899998


No 9  
>d1vcpa_ b.47.1.3 (A:) Viral capsid protein {Semliki forest virus [TaxId: 11033]}
Probab=13.87  E-value=21  Score=13.87  Aligned_cols=12  Identities=33%  Similarity=0.816  Sum_probs=6.7

Q ss_pred             ECCEEEECCEEE
Q ss_conf             756782000248
Q gi|255764487|r  173 INERVLRPALVS  184 (219)
Q Consensus       173 l~~rvlRpA~V~  184 (219)
                      +++||.+||.|.
T Consensus        18 vg~kv~KP~HVk   29 (149)
T d1vcpa_          18 VGDKVMKPAHVK   29 (149)
T ss_dssp             BTTEEBCBTTCC
T ss_pred             ECCEEECCCCCC
T ss_conf             758640132035


No 10 
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]}
Probab=13.34  E-value=13  Score=15.25  Aligned_cols=35  Identities=17%  Similarity=0.436  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEECCCEEECCEE
Q ss_conf             4479999999999864110001368887570057775224345897745999970881775678
Q gi|255764487|r  114 EGIEMTRREMMSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERV  177 (219)
Q Consensus       114 ~Gi~mi~k~l~~~L~~~GV~~i~~~G~~FDP~~HeAi~~~~~~~~~~~tVi~v~q~GY~l~~rv  177 (219)
                      ..-..+-+.|-.-....||+.+     .||                        +.||+|||||
T Consensus        67 ~aA~~vG~~la~ra~~~gI~~v-----vfD------------------------R~g~~YhGrV  101 (113)
T d2gycm1          67 DAAAAVGKAVAERALEKGIKDV-----SFD------------------------RSGFQYHGRV  101 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCC-----CCB------------------------CCSCCSSSHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCEE-----EEC------------------------CCCCCCCHHH
T ss_conf             8999999999999998799999-----987------------------------9998641499


Done!