Query gi|255764487|ref|YP_003065115.2| heat shock protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 219 No_of_seqs 122 out of 2077 Neff 7.2 Searched_HMMs 13730 Date Wed Jun 1 07:44:15 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764487.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1dkga1 b.73.1.1 (A:139-197) H 99.8 1.8E-20 1.3E-24 148.5 3.8 59 132-190 1-59 (59) 2 d2j01s1 c.55.4.1 (S:23-108) Ri 23.8 6.3 0.00046 17.2 -0.5 31 118-177 46-76 (86) 3 d1ep5a_ b.47.1.3 (A:) Viral ca 18.9 18 0.0013 14.3 1.0 13 172-184 23-35 (156) 4 d1wyka_ b.47.1.3 (A:) Viral ca 18.3 19 0.0014 14.2 1.0 16 170-185 15-32 (152) 5 d1swxa_ a.224.1.1 (A:) Glycoli 17.1 27 0.002 13.2 5.4 63 71-136 138-200 (202) 6 d2zjrl1 c.55.4.1 (L:8-111) Rib 16.7 8.9 0.00065 16.2 -1.0 10 168-177 84-93 (104) 7 d1pzqa_ a.34.3.1 (A:) Erythron 15.7 29 0.0021 12.9 3.2 16 82-97 12-27 (60) 8 d1eg7a_ c.37.1.10 (A:) Formylt 15.2 30 0.0022 12.9 3.3 62 89-153 329-392 (549) 9 d1vcpa_ b.47.1.3 (A:) Viral ca 13.9 21 0.0015 13.9 0.3 12 173-184 18-29 (149) 10 d2gycm1 c.55.4.1 (M:3-115) Rib 13.3 13 0.00092 15.3 -0.9 35 114-177 67-101 (113) No 1 >d1dkga1 b.73.1.1 (A:139-197) Head domain of nucleotide exchange factor GrpE {Escherichia coli [TaxId: 562]} Probab=99.79 E-value=1.8e-20 Score=148.51 Aligned_cols=59 Identities=32% Similarity=0.611 Sum_probs=56.9 Q ss_pred HCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEECCCEEECCEEEECCEEEEECCCC Q ss_conf 00013688875700577752243458977459999708817756782000248604888 Q gi|255764487|r 132 VKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVLRPALVSISKGKT 190 (219) Q Consensus 132 V~~i~~~G~~FDP~~HeAi~~~~~~~~~~~tVi~v~q~GY~l~~rvlRpA~V~Vsk~~~ 190 (219) |+.|+++|++|||++||||+++++++.++|||++|+|+||+|+|||||||+|+|||+|+ T Consensus 1 ve~i~~~g~~FDP~~HeAv~~~~~~~~~~~~I~~v~~~GY~~~~rvlRpA~V~V~k~~s 59 (59) T d1dkga1 1 VEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKAKA 59 (59) T ss_dssp EEEECCCSSBCCTTSEEEEEEEECSSSCTTBEEEEEECEEEETTEEEECEEEEEEECCC T ss_pred CCEECCCCCCCCHHHCEEEEEECCCCCCCCEEEEEEECCCEECCEEEECCEEEEECCCC T ss_conf 92507789988977910705865799998989999807949899993164899945899 No 2 >d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]} Probab=23.81 E-value=6.3 Score=17.21 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=19.4 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEECCCEEECCEE Q ss_conf 999999999864110001368887570057775224345897745999970881775678 Q gi|255764487|r 118 MTRREMMSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERV 177 (219) Q Consensus 118 mi~k~l~~~L~~~GV~~i~~~G~~FDP~~HeAi~~~~~~~~~~~tVi~v~q~GY~l~~rv 177 (219) .+-+.|-..+.+.||+.+ .|| +.||+||||| T Consensus 46 ~vG~~la~~ak~~gI~~v-----~FD------------------------R~g~~YHGrv 76 (86) T d2j01s1 46 QVGRALAEKALALGIKQV-----AFD------------------------RGPYKYHGRV 76 (86) T ss_dssp HHHHHHHHHHHHTSCCCC-----BCC------------------------CSTTCSSSSC T ss_pred HHHHHHHHHHHHCCCCEE-----EEE------------------------CCCCCCCCHH T ss_conf 999999999998799889-----994------------------------8997220299 No 3 >d1ep5a_ b.47.1.3 (A:) Viral capsid protein {Venezuelan equine encephalitis virus [TaxId: 11036]} Probab=18.92 E-value=18 Score=14.33 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=10.1 Q ss_pred EECCEEEECCEEE Q ss_conf 7756782000248 Q gi|255764487|r 172 AINERVLRPALVS 184 (219) Q Consensus 172 ~l~~rvlRpA~V~ 184 (219) .+++||++||.|+ T Consensus 23 lvg~kv~KPaHVk 35 (156) T d1ep5a_ 23 VVGGKLFRPMHVE 35 (156) T ss_dssp EETTEEEEETTCC T ss_pred EECCEEECCCCCC T ss_conf 8757530332045 No 4 >d1wyka_ b.47.1.3 (A:) Viral capsid protein {Sindbis virus [TaxId: 11034]} Probab=18.31 E-value=19 Score=14.19 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=11.7 Q ss_pred CE--EECCEEEECCEEEE Q ss_conf 81--77567820002486 Q gi|255764487|r 170 GY--AINERVLRPALVSI 185 (219) Q Consensus 170 GY--~l~~rvlRpA~V~V 185 (219) || .+++||.+||.|.= T Consensus 15 GYA~lvg~kv~KPaHVkG 32 (152) T d1wyka_ 15 GHALAMEGKVMKPLHVKG 32 (152) T ss_dssp EEEEEETTEEEEETTCCS T ss_pred EEEEEECCEEECCCCCCC T ss_conf 789997586302320353 No 5 >d1swxa_ a.224.1.1 (A:) Glycolipid transfer protein, GLTP {Human (Homo sapiens) [TaxId: 9606]} Probab=17.08 E-value=27 Score=13.15 Aligned_cols=63 Identities=10% Similarity=0.011 Sum_probs=46.7 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 642433432031578999999721222332101112789987644799999999998641100013 Q gi|255764487|r 71 YSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTRREMMSTLERYGVKKID 136 (219) Q Consensus 71 ~a~~~~~~~lL~v~D~lerAl~~~~~~~~~~~~~~~~~~~~~~~Gi~mi~k~l~~~L~~~GV~~i~ 136 (219) .+...++..++|....|-..+....+.. ....-..+..++..+.-++..+...++++|+..-. T Consensus 138 r~~~~~A~~~~P~R~~fl~~l~~~~~~~---~~~~~~~l~~~~~~~~~~~~~i~~ly~~~~L~~~~ 200 (202) T d1swxa_ 138 QKIFQAALYAAPYKSDFLKALSKGQNVT---EEECLEKIRLFLVNYTATIDVIYEMYTQMNAELNY 200 (202) T ss_dssp HHHHHHHHHTCCCHHHHHHHHTC----C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 9999999981797999999983698424---89999999999999999999999999986999778 No 6 >d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {Deinococcus radiodurans [TaxId: 1299]} Probab=16.69 E-value=8.9 Score=16.23 Aligned_cols=10 Identities=30% Similarity=0.574 Sum_probs=7.3 Q ss_pred CCCEEECCEE Q ss_conf 0881775678 Q gi|255764487|r 168 QDGYAINERV 177 (219) Q Consensus 168 q~GY~l~~rv 177 (219) +.||+||||| T Consensus 84 R~g~~YHGrv 93 (104) T d2zjrl1 84 RGSYKYHGRV 93 (104) T ss_dssp CCSSCSCSHH T ss_pred CCCCCCHHHH T ss_conf 8997321399 No 7 >d1pzqa_ a.34.3.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]} Probab=15.69 E-value=29 Score=12.94 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=12.6 Q ss_pred CHHHHHHHHHHHCCCC Q ss_conf 1578999999721222 Q gi|255764487|r 82 SVSDNLSRALDSAPLD 97 (219) Q Consensus 82 ~v~D~lerAl~~~~~~ 97 (219) .-+|.|+|||.+.+.. T Consensus 12 ~rld~le~al~al~~~ 27 (60) T d1pzqa_ 12 DRLDELEKALEALSAE 27 (60) T ss_dssp HHHHHHHHHHHHHTTS T ss_pred HHHHHHHHHHHHCCHH T ss_conf 6588999999836521 No 8 >d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]} Probab=15.21 E-value=30 Score=12.86 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=39.4 Q ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCC-CCHHHHHHCC Q ss_conf 9997212223321011127899876447999999999986411000136888-757-0057775224 Q gi|255764487|r 89 RALDSAPLDLANSEKKSESVLKSLIEGIEMTRREMMSTLERYGVKKIDAKDQ-KFN-PNMHQAMFEE 153 (219) Q Consensus 89 rAl~~~~~~~~~~~~~~~~~~~~~~~Gi~mi~k~l~~~L~~~GV~~i~~~G~-~FD-P~~HeAi~~~ 153 (219) |||....-- .......+.+..+..|+.-+.+++.++ ++|||..+-+++. ..| +...+++... T Consensus 329 RALK~HGG~--~~~~l~~eNl~Al~~G~~NL~rHIeNi-~~fGlpvVVAIN~F~tDTd~Ei~~i~~~ 392 (549) T d1eg7a_ 329 RALKMHGGV--PKSDLATENLEALREGFANLEKHIENI-GKFGVPAVVAINAFPTDTEAELNLLYEL 392 (549) T ss_dssp HHHHHTTTC--CGGGTTSCCHHHHHHHHHHHHHHHHHH-HTTTCCEEEEEECCTTCCHHHHHHHHHH T ss_pred HHHHHCCCC--CHHHCCCCCHHHHHHHHHHHHHHHHHH-HHCCCCEEEEECCCCCCCHHHHHHHHHH T ss_conf 345545799--948817325999998877799998752-2228974998525775314478899998 No 9 >d1vcpa_ b.47.1.3 (A:) Viral capsid protein {Semliki forest virus [TaxId: 11033]} Probab=13.87 E-value=21 Score=13.87 Aligned_cols=12 Identities=33% Similarity=0.816 Sum_probs=6.7 Q ss_pred ECCEEEECCEEE Q ss_conf 756782000248 Q gi|255764487|r 173 INERVLRPALVS 184 (219) Q Consensus 173 l~~rvlRpA~V~ 184 (219) +++||.+||.|. T Consensus 18 vg~kv~KP~HVk 29 (149) T d1vcpa_ 18 VGDKVMKPAHVK 29 (149) T ss_dssp BTTEEBCBTTCC T ss_pred ECCEEECCCCCC T ss_conf 758640132035 No 10 >d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]} Probab=13.34 E-value=13 Score=15.25 Aligned_cols=35 Identities=17% Similarity=0.436 Sum_probs=23.2 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEECCCEEECCEE Q ss_conf 4479999999999864110001368887570057775224345897745999970881775678 Q gi|255764487|r 114 EGIEMTRREMMSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERV 177 (219) Q Consensus 114 ~Gi~mi~k~l~~~L~~~GV~~i~~~G~~FDP~~HeAi~~~~~~~~~~~tVi~v~q~GY~l~~rv 177 (219) ..-..+-+.|-.-....||+.+ .|| +.||+||||| T Consensus 67 ~aA~~vG~~la~ra~~~gI~~v-----vfD------------------------R~g~~YhGrV 101 (113) T d2gycm1 67 DAAAAVGKAVAERALEKGIKDV-----SFD------------------------RSGFQYHGRV 101 (113) T ss_dssp HHHHHHHHHHHHHHHHHTCCCC-----CCB------------------------CCSCCSSSHH T ss_pred HHHHHHHHHHHHHHHHCCCCEE-----EEC------------------------CCCCCCCHHH T ss_conf 8999999999999998799999-----987------------------------9998641499 Done!