RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|255764487|ref|YP_003065115.2| heat shock protein [Candidatus
Liberibacter asiaticus str. psy62]
(219 letters)
>gnl|CDD|172630 PRK14141, PRK14141, heat shock protein GrpE; Provisional.
Length = 209
Score = 219 bits (560), Expect = 4e-58
Identities = 95/196 (48%), Positives = 128/196 (65%), Gaps = 4/196 (2%)
Query: 6 SEKNIDKEKNPSNANSSTAEEKSEINIPEESLN-QSEEFRDKYLRVIAEMENLRRRTDRE 64
++ D E P E+L ++ E +D+ LR+ AEMENLR+RT R+
Sbjct: 12 ADAARDANNPVDREAKPYEMEDDPEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRD 71
Query: 65 KKDAQSYSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTRREMM 124
DA++Y IA FARDMLSVSDNL RALD+ P A + +++ LK+LIEG+EMT R M+
Sbjct: 72 VADARAYGIAGFARDMLSVSDNLRRALDAIP---AEARAAADAGLKALIEGVEMTERAML 128
Query: 125 STLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVLRPALVS 184
+ LER+GVKK+D + QKF+PN HQAMFE P+ VP NT+++VVQ GY I ERVLRPA+V
Sbjct: 129 NALERHGVKKLDPEGQKFDPNFHQAMFEVPNPDVPNNTVVQVVQAGYTIGERVLRPAMVG 188
Query: 185 ISKGKTQNPTEEKKET 200
++KG + E T
Sbjct: 189 VAKGGPKAAAEAGAST 204
>gnl|CDD|184541 PRK14155, PRK14155, heat shock protein GrpE; Provisional.
Length = 208
Score = 139 bits (352), Expect = 5e-34
Identities = 73/181 (40%), Positives = 115/181 (63%), Gaps = 12/181 (6%)
Query: 13 EKNPSNANSSTAEEKSEINIPEESLN-QSEEFRDKYLRVIAEMENLRRRTDREKKDAQSY 71
E+ P+ A++ ++ E+L + +D+ LR AE EN +RR +RE DA++Y
Sbjct: 4 EQTPAEDGPFEADDAAQ---EIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAY 60
Query: 72 SIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTRREMMSTLERYG 131
+I KFARD+L +DNL RA ++P D A + +K+ I G+EMT +E++ ER G
Sbjct: 61 AIQKFARDLLGAADNLGRATAASPKDSA------DPAVKNFIIGVEMTEKELLGAFERNG 114
Query: 132 VKKID-AKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVLRPALVSI-SKGK 189
+KKID AK KF+P++HQAM E+P V A +++V+Q GY + R++RPA+V++ +KG
Sbjct: 115 LKKIDPAKGDKFDPHLHQAMMEQPSTEVAAGGVLQVMQAGYELMGRLVRPAMVAVAAKGS 174
Query: 190 T 190
T
Sbjct: 175 T 175
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional.
Length = 193
Score = 131 bits (333), Expect = 9e-32
Identities = 60/155 (38%), Positives = 98/155 (63%), Gaps = 9/155 (5%)
Query: 34 EESLNQSE-EFRDKYLRVIAEMENLRRRTDREKKDAQSYSIAKFARDMLSVSDNLSRALD 92
E L +++ E RD LR AE+EN+RRR +++ + A +++ KFA ++L V DNL RAL
Sbjct: 47 EAQLAEAQAEERDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVIDNLERALQ 106
Query: 93 SAPLDLANSEKKSESVLKSLIEGIEMTRREMMSTLERYGVKKIDAKDQKFNPNMHQAMFE 152
+A K LK+LIEG+E+T + ++ T+ ++GV+ + + FNP +HQA+
Sbjct: 107 AA--------DKENEALKALIEGVELTLKSLLDTVAKFGVEVVGPVGEPFNPEVHQAISM 158
Query: 153 EPHDTVPANTIIKVVQDGYAINERVLRPALVSISK 187
+ + NT++ V+Q GY +N R+LRPA+V +SK
Sbjct: 159 QESEDHEPNTVMMVMQKGYTLNGRLLRPAMVMVSK 193
>gnl|CDD|184532 PRK14139, PRK14139, heat shock protein GrpE; Provisional.
Length = 185
Score = 120 bits (304), Expect = 2e-28
Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 16/178 (8%)
Query: 16 PSNANSSTAEEKSEINIPEESLNQSE----EFRDKYLRVIAEMENLRRRTDREKKDAQSY 71
A ++ A + E L ++E E +D +LR AE EN+RRR + A +
Sbjct: 20 AQAAAAAAAAAEDAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKF 79
Query: 72 SIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTRREMMSTLERYG 131
+I FA +L V D+L AL L+ L EG+E+T +++ S E+
Sbjct: 80 AIESFAESLLPVKDSLEAAL-----------ADESGDLEKLREGVELTLKQLTSAFEKGR 128
Query: 132 VKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVLRPALVSISKGK 189
V +I+ +KF+P+ HQA+ P + NT++ V+Q GY I +RVLRPALV+++ K
Sbjct: 129 VVEINPVGEKFDPHQHQAISMVPAEQ-EPNTVVAVLQKGYTIADRVLRPALVTVAAPK 185
>gnl|CDD|172640 PRK14151, PRK14151, heat shock protein GrpE; Provisional.
Length = 176
Score = 118 bits (298), Expect = 1e-27
Identities = 56/181 (30%), Positives = 104/181 (57%), Gaps = 11/181 (6%)
Query: 7 EKNIDKEKNPSNANSSTAEEKSEINIPEESLNQSEEFRDKYLRVIAEMENLRRRTDREKK 66
++ + ++ + + + EE L +D+ LR A+++N+RRR +++ +
Sbjct: 6 TLDLQAPEAAQAEAAAGDDLTARVQELEEQL---AAAKDQSLRAAADLQNVRRRAEQDVE 62
Query: 67 DAQSYSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTRREMMST 126
A +++ KFA D+L V D+L R L+ L++++ ++ +K + EG+E+T + T
Sbjct: 63 KAHKFALEKFAGDLLPVVDSLERGLE-----LSSADDEA---IKPMREGVELTLKMFQDT 114
Query: 127 LERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVLRPALVSIS 186
L+RY ++ +D + FNP HQAM + V N+++KV Q GY +N R+LRPA+V +S
Sbjct: 115 LKRYQLEAVDPHGEPFNPEHHQAMAMQESADVEPNSVLKVFQKGYLLNGRLLRPAMVVVS 174
Query: 187 K 187
K
Sbjct: 175 K 175
>gnl|CDD|184540 PRK14153, PRK14153, heat shock protein GrpE; Provisional.
Length = 194
Score = 109 bits (274), Expect = 5e-25
Identities = 63/197 (31%), Positives = 115/197 (58%), Gaps = 17/197 (8%)
Query: 6 SEKNIDKEKNPSNANSS----TAEEKSEINIPEESLNQSEEFRDKYLRVIAEMENLRRRT 61
+E + + S + E+ + + E+ + E +++ R+ AE +N R+RT
Sbjct: 11 AENSEARNSGSSAEEAEELKEEPEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRT 70
Query: 62 DREKKDAQSYSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTRR 121
RE ++ + + + + D+L V+DN RAL+SA + +E + S++EGIEM +
Sbjct: 71 AREMEENRKFVLEQVLLDLLEVTDNFERALESA--------RTAEDM-NSIVEGIEMVSK 121
Query: 122 EMMSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVLRPA 181
+ S LE+YG+++I+ + ++F+P+ H+AM VP NTI+ V + GYA+N +V+RPA
Sbjct: 122 QFFSILEKYGLERIECEGEEFDPHRHEAMMHVETSEVPDNTIVDVCKPGYALNSKVIRPA 181
Query: 182 LVSISKGKTQNPTEEKK 198
+VS+++ NP EE+K
Sbjct: 182 MVSVAR----NPDEEEK 194
>gnl|CDD|184533 PRK14140, PRK14140, heat shock protein GrpE; Provisional.
Length = 191
Score = 107 bits (269), Expect = 2e-24
Identities = 54/171 (31%), Positives = 100/171 (58%), Gaps = 12/171 (7%)
Query: 17 SNANSSTAEEKSEINIPEESLNQSEEFRDKYLRVIAEMENLRRRTDREKKDAQSYSIAKF 76
+ EE+++I E L++ E ++YLR+ A+ EN +RR +E + A+ Y
Sbjct: 33 ESEAELLDEEQAKIAELEAKLDELE---ERYLRLQADFENYKRRIQKENEAAEKYRAQSL 89
Query: 77 ARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTRREMMSTLERYGVKKID 136
A D+L DN RAL E E KSL++G+EM R+++ L++ GV+ I+
Sbjct: 90 ASDLLPALDNFERAL--------QIEADDEQT-KSLLKGVEMVHRQLLEALKKEGVEVIE 140
Query: 137 AKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVLRPALVSISK 187
A ++F+PN+HQA+ ++ + +N +++ +Q GY + +RV+RP++V +++
Sbjct: 141 AVGEQFDPNLHQAVMQDEDEDFESNEVVEELQKGYKLKDRVIRPSMVKVNQ 191
>gnl|CDD|172646 PRK14158, PRK14158, heat shock protein GrpE; Provisional.
Length = 194
Score = 101 bits (252), Expect = 2e-22
Identities = 56/144 (38%), Positives = 84/144 (58%), Gaps = 11/144 (7%)
Query: 45 DKYLRVIAEMENLRRRTDREKKDAQSYSIAKFARDMLSVSDNLSRALDSAPLDLANSEKK 104
DKYLR A++EN R+R +EK++ Y ++L DN+ RALD A
Sbjct: 61 DKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMERALDHA---------- 110
Query: 105 SESVLKSLIEGIEMTRREMMSTLERYGVKKIDA-KDQKFNPNMHQAMFEEPHDTVPANTI 163
E + ++IEGI MT ++STL+++GV ++A K F+P HQAM + NT+
Sbjct: 111 DEESMSAIIEGIRMTLSMLLSTLKKFGVTPVEAEKGTPFDPAYHQAMCQVESAEQEPNTV 170
Query: 164 IKVVQDGYAINERVLRPALVSISK 187
+ V Q GY +NER+LRPA+VS++
Sbjct: 171 VAVFQKGYLLNERLLRPAMVSVAT 194
>gnl|CDD|184538 PRK14149, PRK14149, heat shock protein GrpE; Provisional.
Length = 191
Score = 96.1 bits (239), Expect = 7e-21
Identities = 61/192 (31%), Positives = 98/192 (51%), Gaps = 15/192 (7%)
Query: 1 METFMSEKNIDKEKNPSNANSSTAEEKSEINIPEESLNQS-----EEFRDKYLRVIAEME 55
+S+K + E+ EEK E + E + + +E +KYLRV A+ E
Sbjct: 8 EHDHLSQKEPESEEKACACKEQQGEEKQEASEKEGEIKEDFELKYKEMHEKYLRVHADFE 67
Query: 56 NLRRRTDREKKDAQSYSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEG 115
N+++R +R+K A Y+ K A D+L V D L AL SA +L +G
Sbjct: 68 NVKKRLERDKSMALEYAYEKIALDLLPVIDALLGALKSA---------AEVDKESALTKG 118
Query: 116 IEMTRREMMSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINE 175
+E+T ++ L R+G++ I ++F+PN H A+ + + I++V+Q GY
Sbjct: 119 LELTMEKLHEVLARHGIEGI-ECLEEFDPNFHNAIMQVKSEEKENGKIVQVLQQGYKYKG 177
Query: 176 RVLRPALVSISK 187
RVLRPA+VSI+K
Sbjct: 178 RVLRPAMVSIAK 189
>gnl|CDD|184545 PRK14162, PRK14162, heat shock protein GrpE; Provisional.
Length = 194
Score = 95.7 bits (238), Expect = 8e-21
Identities = 61/200 (30%), Positives = 102/200 (51%), Gaps = 23/200 (11%)
Query: 2 ETFMSEKNIDKEKNPSNANSSTA-----EEKSEINIPEESLN--------QSEEFRDKYL 48
E F SEK++ +E+ A A EE E P E L ++++ DKYL
Sbjct: 4 EEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKEIADLKAKNKDLEDKYL 63
Query: 49 RVIAEMENLRRRTDREKKDAQSYSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESV 108
R AE++N++ R +E+ Y A+D+L DNL RAL + K +
Sbjct: 64 RSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNLERAL---------AVKADDEA 114
Query: 109 LKSLIEGIEMTRREMMSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDT-VPANTIIKVV 167
K L +G++MT ++ L+ +GV +I A +KF+P +HQA+ + + +++V+
Sbjct: 115 AKQLKKGVQMTLDHLVKALKDHGVTEIKADGEKFDPTLHQAVQTVAAENDDQKDHVVQVL 174
Query: 168 QDGYAINERVLRPALVSISK 187
Q GY +R LRPA+V +++
Sbjct: 175 QKGYQYKDRTLRPAMVVVAQ 194
>gnl|CDD|182379 PRK10325, PRK10325, heat shock protein GrpE; Provisional.
Length = 197
Score = 92.8 bits (230), Expect = 7e-20
Identities = 60/190 (31%), Positives = 107/190 (56%), Gaps = 10/190 (5%)
Query: 2 ETFMSEKNIDKEKNPSNANSSTAEEKSE--INIPEESLNQSEEFRDKYLRVIAEMENLRR 59
E + +++ + E A++ + + E N+ + RD LRV AEMENLRR
Sbjct: 15 EEIIMDQHEEIEAVEPEASAEQVDPRDEKIANLEAQLAEAQTRERDGILRVKAEMENLRR 74
Query: 60 RTDREKKDAQSYSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMT 119
RT+ + + A +++ KF ++L V D+L RAL+ A D AN + + +++EGIE+T
Sbjct: 75 RTELDIEKAHKFALEKFINELLPVIDSLDRALEVA--DKANPD------MSAMVEGIELT 126
Query: 120 RREMMSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVLR 179
+ M+ + ++GV+ I + +PN+HQA+ D V ++ ++Q GY +N R +R
Sbjct: 127 LKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIR 186
Query: 180 PALVSISKGK 189
A+V+++K K
Sbjct: 187 AAMVTVAKAK 196
>gnl|CDD|172649 PRK14161, PRK14161, heat shock protein GrpE; Provisional.
Length = 178
Score = 90.4 bits (224), Expect = 3e-19
Identities = 63/186 (33%), Positives = 107/186 (57%), Gaps = 13/186 (6%)
Query: 5 MSEKNIDKEKNPSNANSSTAEEKSEINIPE--ESLNQSEEFRDKYLRVIAEMENLRRRTD 62
M + NI+ N + AEE E PE + EE +DK +R AE++N R+R +
Sbjct: 1 MIDDNIE---NNEQTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLE 57
Query: 63 REKKDAQSYSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTRRE 122
+ + +A+ Y+IA FA+++L+VSDNLSRAL P + S+ + ++I G++MT+ E
Sbjct: 58 KARDEAKDYAIATFAKELLNVSDNLSRALAHKPAN-------SDVEVTNIIAGVQMTKDE 110
Query: 123 MMSTLERYGVKKIDAK-DQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVLRPA 181
+ ++ +++I + F+ N+H A+ + H N+II ++Q GY I +R+LRPA
Sbjct: 111 LDKVFHKHHIEEIKPEIGSMFDYNLHNAISQIEHPDHAPNSIITLMQSGYKIRDRLLRPA 170
Query: 182 LVSISK 187
V + K
Sbjct: 171 TVQVVK 176
>gnl|CDD|184542 PRK14156, PRK14156, heat shock protein GrpE; Provisional.
Length = 177
Score = 86.0 bits (213), Expect = 6e-18
Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 15/165 (9%)
Query: 24 AEEKSEINIPEESLNQSEEFRDKYLRVIAEMENLRRRTDREKKDAQSYSIAKFARDMLSV 83
EE E + E + +++EF +KYLR AEM+N++RR + E++ Q Y A+ +L
Sbjct: 27 VEETPEKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPS 86
Query: 84 SDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTRREMMSTLERYGVKKIDAKDQKFN 143
DNL RAL A L + KK G+EM + ++ L+ GV+++ F+
Sbjct: 87 LDNLERAL--AVEGLTDDVKK----------GLEMVQESLIQALKEEGVEEVAV--DSFD 132
Query: 144 PNMHQAMFEEP-HDTVPANTIIKVVQDGYAINERVLRPALVSISK 187
N+H A+ P D PA++I +V Q GY ++ER+LRPA+V +
Sbjct: 133 HNLHMAVQTLPADDEHPADSIAQVFQKGYKLHERLLRPAMVVVYN 177
>gnl|CDD|184535 PRK14144, PRK14144, heat shock protein GrpE; Provisional.
Length = 199
Score = 84.8 bits (209), Expect = 2e-17
Identities = 57/176 (32%), Positives = 101/176 (57%), Gaps = 13/176 (7%)
Query: 12 KEKNPSNANSSTAEEKSEINIPEESLNQSEEFRDKYLRVIAEMENLRRRTDREKKDAQSY 71
+ + P+ + S + ++ + E+ ++ E +K +R +AE+EN+RRR +RE +A Y
Sbjct: 36 QHQEPALGHPSYTALEEQLTLAEQ---KAHENWEKSVRALAELENVRRRMEREVANAHKY 92
Query: 72 SIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTRREMMSTLERYG 131
+ K +L V D+L +AL A +K S+ S+ EG+E+T + + L+++
Sbjct: 93 GVEKLISALLPVVDSLEQALQLA-------DKNSDP---SMHEGLELTMKLFLDALQKFD 142
Query: 132 VKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVLRPALVSISK 187
V++ID Q F+P H+AM +P P N++I V Q GY +++RV+RPA V +S
Sbjct: 143 VEQIDPLGQTFDPQQHEAMSMQPAPGAPPNSVITVFQKGYKLSDRVIRPARVIVST 198
>gnl|CDD|172637 PRK14148, PRK14148, heat shock protein GrpE; Provisional.
Length = 195
Score = 84.4 bits (208), Expect = 2e-17
Identities = 57/147 (38%), Positives = 94/147 (63%), Gaps = 9/147 (6%)
Query: 41 EEFRDKYLRVIAEMENLRRRTDREKKDAQSYSIAKFARDMLSVSDNLSRALDSAPLDLAN 100
++F+D+ LR AEMEN+R+R +R+ +A+ + I KFA+++L V D++ +AL
Sbjct: 57 DQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQAL--------K 108
Query: 101 SEKKSESVLKSLIEGIEMTRREMMSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPA 160
E K E + ++ EGIE+T + ++ L++ GV+++D K +KF+PN+H+AM P+
Sbjct: 109 HEVKLEEAI-AMKEGIELTAKMLVDILKKNGVEELDPKGEKFDPNLHEAMAMIPNPEFED 167
Query: 161 NTIIKVVQDGYAINERVLRPALVSISK 187
NTI V Q GY +N R++R A V I K
Sbjct: 168 NTIFDVFQKGYMLNGRIVRAAKVVIVK 194
>gnl|CDD|172647 PRK14159, PRK14159, heat shock protein GrpE; Provisional.
Length = 176
Score = 82.8 bits (204), Expect = 6e-17
Identities = 61/183 (33%), Positives = 102/183 (55%), Gaps = 12/183 (6%)
Query: 7 EKNIDKEKNPSNANSSTAEEKSEINIPEESLNQSE--EFRDKYLRVIAEMENLRRRTDRE 64
+K + +N N+ E I E++ Q + E +DKY+R AE EN+++R ++E
Sbjct: 4 QKQEFENENAENSEHLQDENLQNIEDVEQNKLQKDYDELKDKYMRANAEFENIKKRMEKE 63
Query: 65 KKDAQSYSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTRREMM 124
K A +Y+ FA+D+L V D L A+ N E E LK + EG++ T +
Sbjct: 64 KLSAMAYANESFAKDLLDVLDALEAAV--------NVECHDEISLK-IKEGVQNTLDLFL 114
Query: 125 STLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVLRPALVS 184
LE++GV I +++F+PN+H+AMF + + +++V+Q GY I +RV+RP VS
Sbjct: 115 KKLEKHGVALIKE-EKEFDPNLHEAMFHVDSENHQSGEVVQVLQKGYKIADRVIRPTKVS 173
Query: 185 ISK 187
++K
Sbjct: 174 VAK 176
>gnl|CDD|184534 PRK14143, PRK14143, heat shock protein GrpE; Provisional.
Length = 238
Score = 82.9 bits (205), Expect = 6e-17
Identities = 58/225 (25%), Positives = 99/225 (44%), Gaps = 40/225 (17%)
Query: 5 MSEKNIDKEKNPSNANSSTAEEKSEINIPEESLNQS---------------------EEF 43
SE+ ++E +N AE +S + + + EE
Sbjct: 27 SSEEVTEQEAELTNPEGDAAEAESSPDSGSAASETAADNAARLAQLEQELESLKQELEEL 86
Query: 44 RDKYLRVIAEMENLRRRTDREKKDAQSYSIAKFARDMLSVSDNLSRALDSAPLDLANSE- 102
+Y+R+ A+ +N R+RT RE++D + ++L V DN RA L E
Sbjct: 87 NSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERA--RQQLKPEGEEA 144
Query: 103 ----KKSESVLKSLIEGIEMTRREMMSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTV 158
+ + + K L++ L+R GV + Q+F+PN+H+A+ EP D
Sbjct: 145 QALHRSYQGLYKQLVD-----------VLKRLGVSPMRVVGQEFDPNLHEAVLREPSDEH 193
Query: 159 PANTIIKVVQDGYAINERVLRPALVSISKGK-TQNPTEEKKETIE 202
P + +++ +Q GY + RVLR A+V +S G +P EE + T
Sbjct: 194 PEDVVLEELQRGYHLGGRVLRHAMVKVSMGPGPSSPAEEDQATPA 238
>gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional.
Length = 196
Score = 78.8 bits (194), Expect = 1e-15
Identities = 61/189 (32%), Positives = 96/189 (50%), Gaps = 20/189 (10%)
Query: 7 EKNIDKEKNPSNANSSTAEEKS----EINIPEESLNQSEEFRDKYL----RVIAEMENLR 58
N E P + + + + EI ++ L Q E +YL R+ AE EN R
Sbjct: 20 SSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYR 79
Query: 59 RRTDREKKDAQSYSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEM 118
+RT++EK + Y + ++L V DN RAL S SL EGIE+
Sbjct: 80 KRTEKEKSEMVEYGKEQVILELLPVMDNFERAL------------ASSGDYNSLKEGIEL 127
Query: 119 TRREMMSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVL 178
R+ L+++GVK+I+A+ Q F+P H A+ +E + N II+V Q GY + ++V+
Sbjct: 128 IYRQFKKILDKFGVKEIEAEGQIFDPYKHHAVMQEEVEGKQPNEIIEVFQKGYYLKDKVI 187
Query: 179 RPALVSISK 187
RP+LV ++K
Sbjct: 188 RPSLVKVAK 196
>gnl|CDD|184537 PRK14147, PRK14147, heat shock protein GrpE; Provisional.
Length = 172
Score = 74.6 bits (183), Expect = 2e-14
Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 12/180 (6%)
Query: 9 NIDKEKNPSNANSSTAEEKSEINIPEESL-NQSEEFRDKYLRVIAEMENLRRRTDREKKD 67
N D + S + E + ESL ++ + LR A++EN R+R R+ +
Sbjct: 2 NQDHPEFDSEDLAQNPPETDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQ 61
Query: 68 AQSYSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTRREMMSTL 127
A+ ++ K ++L V D+L L +A + + L +G+E+T ++++
Sbjct: 62 ARKFANEKLLGELLPVFDSLDAGLTAAGTEPS-----------PLRDGLELTYKQLLKVA 110
Query: 128 ERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVLRPALVSISK 187
G+ +D Q FNP HQA+ + + V +++V Q GY +NER+LRPALV ++K
Sbjct: 111 ADNGLTLLDPVGQPFNPEHHQAISQGEAEGVAPGHVVQVFQKGYLLNERLLRPALVVVAK 170
>gnl|CDD|172642 PRK14154, PRK14154, heat shock protein GrpE; Provisional.
Length = 208
Score = 74.1 bits (181), Expect = 3e-14
Identities = 50/147 (34%), Positives = 85/147 (57%), Gaps = 9/147 (6%)
Query: 41 EEFRDKYLRVIAEMENLRRRTDREKKDAQSYSIAKFARDMLSVSDNLSRALDSAPLDLAN 100
+E++ +YLR AEM+NLR+R +REK D + + D+L V+D+L L+S
Sbjct: 69 DEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLESP------ 122
Query: 101 SEKKSESVLKSLIEGIEMTRREMMSTLERYGVKKIDAK-DQKFNPNMHQAMFEEPHDTVP 159
+ +KS+ +G+ +T + +TL ++GV+ I+ F+P +H+AM +
Sbjct: 123 --ASEDPQVKSMRDGMSLTLDLLHNTLAKHGVQVINPNPGDPFDPALHEAMSVQAVPDAK 180
Query: 160 ANTIIKVVQDGYAINERVLRPALVSIS 186
+TII+V+Q GY +N RVLR A V ++
Sbjct: 181 PDTIIQVLQKGYQLNGRVLRAARVIVA 207
>gnl|CDD|184544 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 71.3 bits (175), Expect = 2e-13
Identities = 52/183 (28%), Positives = 96/183 (52%), Gaps = 14/183 (7%)
Query: 6 SEKNIDKEKNPSNANSSTAEEKSEINIPEESL-NQSEEFRDKYLRVIAEMENLRRRTDRE 64
E D E++ +E +++ + L N+ E +D+ LR +AE +N R+RT +E
Sbjct: 42 EEIIEDSEESNEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKE 101
Query: 65 KKDAQSYSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTRREMM 124
K+ S + +++L V DNL RA E ++ L +GIEMT ++
Sbjct: 102 KEGIYSDACEDVLKELLPVLDNLERAA------------AVEGSVEDLKKGIEMTVKQFK 149
Query: 125 STLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVLRPALVS 184
++LE+ GV++I + +F+PN+H A+ + N I++V Q GY ++V+R ++V
Sbjct: 150 TSLEKLGVEEIST-EGEFDPNLHNAVMHVEDENYGENEIVEVFQKGYKRGDKVIRYSMVK 208
Query: 185 ISK 187
++
Sbjct: 209 VAN 211
>gnl|CDD|172635 PRK14146, PRK14146, heat shock protein GrpE; Provisional.
Length = 215
Score = 63.2 bits (153), Expect = 4e-11
Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 13/154 (8%)
Query: 41 EEFRDKYLRVIAEMENLRRRTDREKKDAQSYSIAKFARDMLSVSDNLSRALDSAPLDLAN 100
E +D + R AE +N +RR+ +E + ++ L+ DNL R +
Sbjct: 71 ESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLER--------VGA 122
Query: 101 SEKKSESVLKSLIEGIEMTRREMMSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPA 160
++ +SE LK +EG++M +E S LE+ V + D K + F+P +A+ E D
Sbjct: 123 TQNQSEE-LKPFVEGVKMILKEFYSVLEKSNVIRFDPKGEPFDPMSMEALSSEEGDQYSE 181
Query: 161 NTIIKVVQDGYAINE----RVLRPALVSISKGKT 190
T+I V Q GY E LRPA V I K K+
Sbjct: 182 ETVIDVYQAGYYYKENEDKFTLRPARVRIGKPKS 215
>gnl|CDD|184546 PRK14163, PRK14163, heat shock protein GrpE; Provisional.
Length = 214
Score = 58.6 bits (141), Expect = 1e-09
Identities = 37/151 (24%), Positives = 75/151 (49%), Gaps = 16/151 (10%)
Query: 49 RVIAEMENLRRRTDREKKDAQSYSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESV 108
R+ AE +N RRR +R++ + ++A ++L V D++ RA +
Sbjct: 65 RLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVGRAREHG-------------- 110
Query: 109 LKSLIEGIEMTRREMMSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQ 168
L+ G + + +T+ + G+++ + + F+P +H+A+ V T + ++Q
Sbjct: 111 --ELVGGFKSVAESLETTVAKLGLQQFGKEGEPFDPTIHEALMHSYAPDVTETTCVAILQ 168
Query: 169 DGYAINERVLRPALVSISKGKTQNPTEEKKE 199
GY I ER +RPA V++++ + T + KE
Sbjct: 169 PGYRIGERTIRPARVAVAEPQPGAQTAKAKE 199
>gnl|CDD|184547 PRK14164, PRK14164, heat shock protein GrpE; Provisional.
Length = 218
Score = 51.3 bits (123), Expect = 2e-07
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 21/139 (15%)
Query: 49 RVIAEMENLRRRTDREKKDAQSYSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESV 108
RV AE N RRRT+RE++ + A A D+L + D+L A L+ E
Sbjct: 95 RVTAEYANYRRRTERERQAIIETAKAGVATDLLPILDDLDLAEQHGDLN--------EGP 146
Query: 109 LKSLIEGIEMTRREMMSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTII--KV 166
LK+ ++ + L V+K + F+P +H+A+ D + + V
Sbjct: 147 LKAF-------SDKLTNVLAGLKVEKFGEEGDAFDPEIHEAV----QDLSSGDEKVLGTV 195
Query: 167 VQDGYAINERVLRPALVSI 185
++ GY + +RVLR A+V I
Sbjct: 196 LRKGYRMGDRVLRTAMVII 214
>gnl|CDD|184543 PRK14157, PRK14157, heat shock protein GrpE; Provisional.
Length = 227
Score = 48.4 bits (115), Expect = 1e-06
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 20/178 (11%)
Query: 13 EKNPSNANSSTAEEKSEINIPEESLNQSEEFRDKYL----RVIAEMENLRRRTDREKKDA 68
E A T E +S+ + L Q+++ +YL R AE N R RT +E+
Sbjct: 62 EGEAKAAAEKTGEAQSDSDDTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRF 121
Query: 69 QSYSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTRREMMSTLE 128
+ + I +L D++ R + + +D K++ I+ E
Sbjct: 122 RQHGIIDVLTALLPALDDIDRIREHSEMD---------DSFKAVAAKID-------KAFE 165
Query: 129 RYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVLRPALVSIS 186
++GV+K K + F+P H A+ +P T+ VV+ GY I +RV+R A V ++
Sbjct: 166 KFGVEKFGEKGEDFDPTKHDAILHKPDPDAEKETVDTVVEAGYRIGDRVIRAARVVVA 223
>gnl|CDD|172631 PRK14142, PRK14142, heat shock protein GrpE; Provisional.
Length = 223
Score = 47.3 bits (112), Expect = 3e-06
Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 26/177 (14%)
Query: 49 RVIAEMENLRRRTDREKKDAQSYSIAKFARDMLSVSDNLSRA-----LDSAPLDLANSEK 103
RV A+ N R+R R+++ A + A +L V D+L RA L+S P
Sbjct: 58 RVQADFANYRKRALRDQQAAADRAKASVVSQLLGVLDDLERARKHGDLESGP-------- 109
Query: 104 KSESVLKSLIEGIEMTRREMMSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTI 163
LKS+ + ++ S L G+ A+ + F+P +H+A+ E + +
Sbjct: 110 -----LKSVAD-------KLDSALTGLGLVAFGAEGEDFDPVLHEAVQHEGDGGQGSKPV 157
Query: 164 I-KVVQDGYAINERVLRPALVSISKGKTQNPTEEKKETIEQPSPLDIEERNKTQTKN 219
I V++ GY + E+VLR ALV + + E + E Q +
Sbjct: 158 IGTVMRQGYQLGEQVLRHALVGVVDTVVVDAAELESVDDGTAVADTAENDQADQGNS 214
>gnl|CDD|178472 PLN02884, PLN02884, 6-phosphofructokinase.
Length = 411
Score = 29.4 bits (66), Expect = 0.73
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 121 REMMSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQD 169
R+++ TLE YGVK I P ++ FE+ +P + KVVQ+
Sbjct: 73 RQIVFTLEIYGVKNIVGI-----PFGYRGFFEKGLSEMPLSR--KVVQN 114
>gnl|CDD|179317 PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed.
Length = 428
Score = 27.6 bits (62), Expect = 2.5
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 11/30 (36%)
Query: 105 SESVLKSLIEGIEMTRREMMSTLERYGVKK 134
SES L MM +E+ G KK
Sbjct: 269 SESALPR-----------MMEKMEKLGCKK 287
>gnl|CDD|183712 PRK12739, PRK12739, elongation factor G; Reviewed.
Length = 691
Score = 27.1 bits (61), Expect = 3.9
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 25 EEKSEINIPEESLNQSEEFRDKYLRVIAEM 54
+ E +IP + ++EE+R+K + +AE+
Sbjct: 191 AKYEEEDIPADLKEKAEEYREKLIEAVAEV 220
>gnl|CDD|162336 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA. This
bacterial (and Arabidopsis) protein, termed TypA or
BipA, a GTP-binding protein, is phosphorylated on a
tyrosine residue under some cellular conditions. Mutants
show altered regulation of some pathways, but the
precise function is unknown.
Length = 594
Score = 26.5 bits (59), Expect = 5.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 9 NIDKEKNPSNANSSTAEEKSEINIPEE-SLNQSEEF--RDKYLRVIAEMENLRRR 60
N K K +N SS +E ++ P + SL Q+ E+ D+ + V + LR+R
Sbjct: 531 NPCKAKKLTNVRSSGKDEAVKLTPPRKLSLEQALEYIEDDELVEVTPKSIRLRKR 585
>gnl|CDD|161851 TIGR00389, glyS_dimeric, glycyl-tRNA synthetase, dimeric type.
This model describes a glycyl-tRNA synthetase distinct
from the two alpha and two beta chains of the tetrameric
E. coli glycyl-tRNA synthetase. This enzyme is a
homodimeric class II tRNA synthetase and is recognized
by pfam model tRNA-synt_2b, which recognizes His, Ser,
Pro, and this set of glycyl-tRNA synthetases.
Length = 551
Score = 26.3 bits (58), Expect = 5.7
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 37 LNQSEEFRDKYLRVIAEMENLRRRTDREKKDAQSYSIAKFARDMLSVSDNLSRALDSAPL 96
L Q +F K L V +++ R T E + + KF +D + NLS
Sbjct: 325 LTQHSKFSGKSLSVFDKLDEPREVTKWEIEPNKKKFGPKFRKDAKKIESNLSED------ 378
Query: 97 DLANSEKKSES-VLKSLIEGIEMTRREMMSTLERY 130
DL E++ + ++ + +E+ + E+Y
Sbjct: 379 DLEEREEELDKNEVELDKDLVEIEMVTEVVHGEKY 413
>gnl|CDD|169656 PRK09099, PRK09099, type III secretion system ATPase; Provisional.
Length = 441
Score = 26.3 bits (58), Expect = 6.2
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 40 SEEFRDKYLRVIAEMENLRR--RTDRE 64
+E FRD+ LRV+ M++L R R RE
Sbjct: 245 AEYFRDRGLRVLLMMDSLTRFARAQRE 271
>gnl|CDD|180091 PRK05450, PRK05450, 3-deoxy-manno-octulosonate
cytidylyltransferase; Provisional.
Length = 245
Score = 26.2 bits (59), Expect = 6.5
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 23/52 (44%)
Query: 124 MSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVV--QDGYAI 173
M+TL I ++ FNPN ++KVV DG A+
Sbjct: 123 MATL----AVPIHDAEEAFNPN-----------------VVKVVLDADGRAL 153
>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional.
Length = 263
Score = 25.8 bits (57), Expect = 9.5
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 87 LSRALDSAPLDLANSEKKSESVLKSLIEGIEMTRREMMSTLERYGVKKIDAKDQKFNP 144
L +AL+ A L AN +++L+++ E M E + G+ ++D K P
Sbjct: 192 LDKALELAELINANGPLAVQAILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGP 249
>gnl|CDD|179998 PRK05294, carB, carbamoyl phosphate synthase large subunit;
Reviewed.
Length = 1066
Score = 25.8 bits (58), Expect = 9.5
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 23/74 (31%)
Query: 124 MSTLERYGVK----KIDAKD-----QKFNPNMHQAMFE--EPHDTVPANTIIKVVQDGYA 172
LE+YGV+ K++A D + F +AM + P VP + I +++
Sbjct: 105 SGVLEKYGVELIGAKLEAIDKAEDRELF----KEAMKKIGLP---VPRSGIAHSMEEALE 157
Query: 173 INER-----VLRPA 181
+ E ++RP+
Sbjct: 158 VAEEIGYPVIIRPS 171
>gnl|CDD|181031 PRK07562, PRK07562, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 1220
Score = 25.7 bits (57), Expect = 9.8
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 136 DAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQ 168
D D NP + + + VP N I +V+Q
Sbjct: 334 DCFDPAKNPALKREIKAAKKALVPENYIKRVIQ 366
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.306 0.123 0.318
Gapped
Lambda K H
0.267 0.0638 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,335,185
Number of extensions: 202079
Number of successful extensions: 367
Number of sequences better than 10.0: 1
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 59
Length of query: 219
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 129
Effective length of database: 4,049,753
Effective search space: 522418137
Effective search space used: 522418137
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 55 (25.2 bits)