RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|255764487|ref|YP_003065115.2| heat shock protein [Candidatus
Liberibacter asiaticus str. psy62]
         (219 letters)



>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix
           bundle, dimer, chaperone, cytoplasm, stress response;
           3.23A {Thermus thermophilus HB8} (A:35-115)
          Length = 81

 Score = 90.5 bits (225), Expect = 2e-19
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 11/91 (12%)

Query: 41  EEFRDKYLRVIAEMENLRRRTDREKKDAQSYSIAKFARDMLSVSDNLSRALDSAPLDLAN 100
           +  +DKYLR++A+ +N R+R + E K  +   + K  R +L V D+L RAL+ A      
Sbjct: 2   KGLKDKYLRLLADFDNYRKRMEEELKAREREGVLKALRALLPVLDDLDRALEFAEAS--- 58

Query: 101 SEKKSESVLKSLIEGIEMTRREMMSTLERYG 131
                    +S+ +G+   R      L   G
Sbjct: 59  --------PESIRQGVRAIRDGFFRILAGLG 81


>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide
           exchange factor, coiled-coil, complex (HSP24/HSP70);
           2.80A {Escherichia coli} (A:138-197)
          Length = 60

 Score = 89.2 bits (222), Expect = 4e-19
 Identities = 20/59 (33%), Positives = 35/59 (59%)

Query: 131 GVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVLRPALVSISKGK 189
           GV+ I   +   +PN+HQA+     D V    ++ ++Q GY +N R +R A+V+++K K
Sbjct: 1   GVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKAK 59


>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix
           bundle, dimer, chaperone, cytoplasm, stress response;
           3.23A {Thermus thermophilus HB8} (A:116-177)
          Length = 62

 Score = 81.2 bits (201), Expect = 1e-16
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 132 VKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVLRPALVSISKGKTQ 191
           V+++  + + F+P  H+A+   P        + KV Q G+ + E ++RPA V++ + K +
Sbjct: 1   VEEVPGEGEAFDPRYHEAVGLLP---GEPGKVAKVFQRGFRMGEALVRPARVAVGEEKRE 57

Query: 192 NPTEE 196
               E
Sbjct: 58  EADLE 62


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.306    0.123    0.318 

Gapped
Lambda     K      H
   0.267   0.0722    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,422,872
Number of extensions: 59198
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 7
Length of query: 219
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 134
Effective length of database: 2,082,624
Effective search space: 279071616
Effective search space used: 279071616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 53 (24.2 bits)