BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764487|ref|YP_003065115.2| heat shock protein [Candidatus
Liberibacter asiaticus str. psy62]
         (219 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764487|ref|YP_003065115.2| heat shock protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 219

 Score =  443 bits (1139), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/219 (100%), Positives = 219/219 (100%)

Query: 1   METFMSEKNIDKEKNPSNANSSTAEEKSEINIPEESLNQSEEFRDKYLRVIAEMENLRRR 60
           METFMSEKNIDKEKNPSNANSSTAEEKSEINIPEESLNQSEEFRDKYLRVIAEMENLRRR
Sbjct: 1   METFMSEKNIDKEKNPSNANSSTAEEKSEINIPEESLNQSEEFRDKYLRVIAEMENLRRR 60

Query: 61  TDREKKDAQSYSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTR 120
           TDREKKDAQSYSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTR
Sbjct: 61  TDREKKDAQSYSIAKFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTR 120

Query: 121 REMMSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVLRP 180
           REMMSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVLRP
Sbjct: 121 REMMSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANTIIKVVQDGYAINERVLRP 180

Query: 181 ALVSISKGKTQNPTEEKKETIEQPSPLDIEERNKTQTKN 219
           ALVSISKGKTQNPTEEKKETIEQPSPLDIEERNKTQTKN
Sbjct: 181 ALVSISKGKTQNPTEEKKETIEQPSPLDIEERNKTQTKN 219


>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str.
            psy62]
          Length = 1828

 Score = 27.7 bits (60), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 75   KFARDMLSVSDNLSRALDSAPLDLANSEKKSESVLKSLIEGIEMTRREMMSTLERYG--- 131
            KF   + S SDN+SR L      +++   +S S+++  I  ++     +   LE YG   
Sbjct: 1172 KFHSALDSFSDNISRILLDVDHTISSHTNESRSLIEQRIHEVKDVLSNLDRALESYGSTV 1231

Query: 132  VKKIDAKDQKFNPNMH--QAMFEEPHDTV 158
             K+     Q F  NM   +++F++ +D++
Sbjct: 1232 FKQFKEYVQCFETNMENMESLFDKNNDSM 1260


>gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1162

 Score = 27.7 bits (60), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 124 MSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANT 162
           M  L+RYGV+ I AK +  +    +++F +    +P  T
Sbjct: 105 MGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLAT 143


>gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62]
          Length = 701

 Score = 22.3 bits (46), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 8/27 (29%), Positives = 17/27 (62%)

Query: 30  INIPEESLNQSEEFRDKYLRVIAEMEN 56
           + IPE+  + +  +RDK +  I E+++
Sbjct: 203 VEIPEDMKDSANSYRDKMIESIVELDD 229


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.306    0.123    0.318 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,586
Number of Sequences: 1233
Number of extensions: 4704
Number of successful extensions: 12
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 11
length of query: 219
length of database: 328,796
effective HSP length: 71
effective length of query: 148
effective length of database: 241,253
effective search space: 35705444
effective search space used: 35705444
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 36 (18.5 bits)