HHsearch alignment for GI: 255764488 and conserved domain: PRK06743
>PRK06743 flagellar motor protein MotP; Reviewed.
Probab=100.00 E-value=0 Score=514.13 Aligned_cols=249 Identities=19% Similarity=0.277 Sum_probs=234.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99999999999999970998112---424899999999999999985898999999999999635788996668999999
Q gi|255764488|r 5 IGLFITILCIIGGFYAMGGNPYI---LIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLKL 81 (290)
Q Consensus 5 iGlv~~~~~I~~g~~~~GG~l~~---f~~~~sllIV~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~eli~~ 81 (290)
T Consensus 1 iGl~~g~~~v~~~~~l~gg~~~~l~~f~~~~s~lIV~GGt~~a~li~~~~~~i~~~~~~~~~~~~~~~~~---~~~~i~~ 77 (254)
T PRK06743 1 VGIIVGFAIVIAAIMLGGGGIKAFKNFLDVSSILIVIGGTTATIVVAYRFGEIKKYTKSIFTVLHRREED---LEQLTDL 77 (254)
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC---HHHHHHH
T ss_conf 9247999999999998187477887414705668457799999999778999999999999996677789---9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999741047447642074211455532355306202799999999999637898999999999999999996212
Q gi|255764488|r 82 LYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLKP 161 (290)
Q Consensus 82 l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~~ 161 (290)
T Consensus 78 lv~la~~aRk~GllaLE~~~~~~~-----------------dpFl~~gl~l~vdG~-d~~~i~~~L~~ei~~~~~r~~~~ 139 (254)
T PRK06743 78 FVDFSKKSKKHGLLSLEVDGEQVD-----------------NPFIQKGIRLMLSGY-DEDELKEVLMKDVETEVYELRKG 139 (254)
T ss_pred HHHHHHHHHHCHHHHHHHHHCCCC-----------------CHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999985430877776532379-----------------889999999982799-99999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999998888899999999999961489789998666899999999999999999999999999999999999999
Q gi|255764488|r 162 YHAISHMGESLPAIGIVGAILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYIIV 241 (290)
Q Consensus 162 ~~~~~~~a~~aPafGmiGTviGLI~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~i 241 (290)
T Consensus 140 ~~v~~~~g~~APafGmiGTviGLI~mL~~l~d-p~~iG~~mAvAlvtTlYG~~lAnl~flPiA~KL~~~~~~e~~~~~mi 218 (254)
T PRK06743 140 AALLDKIGDFAPAWGMIGTLIGLIIMLQNLQD-TSQIGTGMAVAMLTTLYGSVLANMIAIPLAEKVYRGIEDLYTEKKFV 218 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999764378899999999999872699-99998999999999999999999999999999998899999998999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHCCCHHHCCCHHH
Q ss_conf 9999999579996899999831199676838899
Q gi|255764488|r 242 KKALIAYMNGAIPQVAIEYGRKVLPLSERPSIEI 275 (290)
Q Consensus 242 ~egi~~i~~g~~P~~~~e~l~~~lp~~~r~~~~e 275 (290)
T Consensus 219 iEGil~I~~genP~~ie~kL~sfL~~~~~~~~~~ 252 (254)
T PRK06743 219 IEAISELYRGQIPSKLKLKLDTYVYETKIKKVKR 252 (254)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHC
T ss_conf 9999998879986999999998589576787761