HHsearch alignment for GI: 255764488 and conserved domain: PRK08124
>PRK08124 flagellar motor protein MotA; Validated.
Probab=100.00 E-value=0 Score=540.40 Aligned_cols=259 Identities=24% Similarity=0.397 Sum_probs=248.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 96899999999999999997099811242489999999999999998589899999999999963578899666899999
Q gi|255764488|r 1 MSTIIGLFITILCIIGGFYAMGGNPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLK 80 (290)
Q Consensus 1 l~tIiGlv~~~~~I~~g~~~~GG~l~~f~~~~sllIV~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~eli~ 80 (290)
T Consensus 3 ~~tiiGli~~~~~i~~g~~~~Gg~~~~~~~~~s~lIV~GGt~~a~li~~p~~~i~~~~~~~~~~f~~~~~--~~~~~li~ 80 (263)
T PRK08124 3 ITTIIGLILGLIAVVVGMVVKGASLAVLLNPAAALIIIVGTIAAVMIAFPMSELKKVPKLFKVLFSEKKD--LSKEELLE 80 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC--CCHHHHHH
T ss_conf 6899999999999999999749985888466579988989999999968899999999999999538887--89999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999974104744764207421145553235530620279999999999963789899999999999999999621
Q gi|255764488|r 81 LLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLK 160 (290)
Q Consensus 81 ~l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~ 160 (290)
T Consensus 81 ~l~~la~~aRk~GllaLE~~i~~~~d-----------------~Fl~~gl~l~vdG~-~~~~i~~~L~~ei~~~~~r~~~ 142 (263)
T PRK08124 81 LFVEWASESRREGLLALEQQLDEIDD-----------------PFLKRGMKMVIDGQ-SAEFIRDVLEEEIEAMEERHAA 142 (263)
T ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCC-----------------HHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999987476768876506687-----------------89998589852899-9999999999999999999873
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 28999999999888889999999999996148978999866689999999999999999999999999999999999999
Q gi|255764488|r 161 PYHAISHMGESLPAIGIVGAILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYII 240 (290)
Q Consensus 161 ~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~ 240 (290)
T Consensus 143 ~~~v~~~~~~~aPafGmiGtvlGLI~~L~~l~d-p~~iG~~mA~ALvtT~yGvllAn~~~~PiA~kl~~~~~~e~~~~~~ 221 (263)
T PRK08124 143 GAAIFTQAGTYAPTLGVLGAVIGLIAALGNLND-IEKLGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKEEIEKKYI 221 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 147999999873677599999999999872599-9999988999999999999999999988999999899999999899
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCCHHHHHHHH
Q ss_conf 9999999957999689999983119967683889999999
Q gi|255764488|r 241 VKKALIAYMNGAIPQVAIEYGRKVLPLSERPSIEIVAQEV 280 (290)
Q Consensus 241 i~egi~~i~~g~~P~~~~e~l~~~lp~~~r~~~~e~~~~~ 280 (290)
T Consensus 222 i~egil~i~~g~~P~~i~e~L~~~L~p~~r~~~~e~~e~~ 261 (263)
T PRK08124 222 IIEGVLAIQEGNAPRIIEEKLLGYLSPKERKKLEEGAEKN 261 (263)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCHHHCHHHHHHHHHC
T ss_conf 9999999868998799999998609962364358765412