HHsearch alignment for GI: 255764488 and conserved domain: PRK08124

>PRK08124 flagellar motor protein MotA; Validated.
Probab=100.00  E-value=0  Score=540.40  Aligned_cols=259  Identities=24%  Similarity=0.397  Sum_probs=248.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             96899999999999999997099811242489999999999999998589899999999999963578899666899999
Q gi|255764488|r    1 MSTIIGLFITILCIIGGFYAMGGNPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLK   80 (290)
Q Consensus         1 l~tIiGlv~~~~~I~~g~~~~GG~l~~f~~~~sllIV~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~eli~   80 (290)
T Consensus         3 ~~tiiGli~~~~~i~~g~~~~Gg~~~~~~~~~s~lIV~GGt~~a~li~~p~~~i~~~~~~~~~~f~~~~~--~~~~~li~   80 (263)
T PRK08124          3 ITTIIGLILGLIAVVVGMVVKGASLAVLLNPAAALIIIVGTIAAVMIAFPMSELKKVPKLFKVLFSEKKD--LSKEELLE   80 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC--CCHHHHHH
T ss_conf             6899999999999999999749985888466579988989999999968899999999999999538887--89999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999974104744764207421145553235530620279999999999963789899999999999999999621
Q gi|255764488|r   81 LLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLK  160 (290)
Q Consensus        81 ~l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~  160 (290)
T Consensus        81 ~l~~la~~aRk~GllaLE~~i~~~~d-----------------~Fl~~gl~l~vdG~-~~~~i~~~L~~ei~~~~~r~~~  142 (263)
T PRK08124         81 LFVEWASESRREGLLALEQQLDEIDD-----------------PFLKRGMKMVIDGQ-SAEFIRDVLEEEIEAMEERHAA  142 (263)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHCCCCC-----------------HHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999987476768876506687-----------------89998589852899-9999999999999999999873


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             28999999999888889999999999996148978999866689999999999999999999999999999999999999
Q gi|255764488|r  161 PYHAISHMGESLPAIGIVGAILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYII  240 (290)
Q Consensus       161 ~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~  240 (290)
T Consensus       143 ~~~v~~~~~~~aPafGmiGtvlGLI~~L~~l~d-p~~iG~~mA~ALvtT~yGvllAn~~~~PiA~kl~~~~~~e~~~~~~  221 (263)
T PRK08124        143 GAAIFTQAGTYAPTLGVLGAVIGLIAALGNLND-IEKLGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKEEIEKKYI  221 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             147999999873677599999999999872599-9999988999999999999999999988999999899999999899


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCCHHHHHHHH
Q ss_conf             9999999957999689999983119967683889999999
Q gi|255764488|r  241 VKKALIAYMNGAIPQVAIEYGRKVLPLSERPSIEIVAQEV  280 (290)
Q Consensus       241 i~egi~~i~~g~~P~~~~e~l~~~lp~~~r~~~~e~~~~~  280 (290)
T Consensus       222 i~egil~i~~g~~P~~i~e~L~~~L~p~~r~~~~e~~e~~  261 (263)
T PRK08124        222 IIEGVLAIQEGNAPRIIEEKLLGYLSPKERKKLEEGAEKN  261 (263)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHCCCHHHCHHHHHHHHHC
T ss_conf             9999999868998799999998609962364358765412