HHsearch alignment for GI: 255764488 and conserved domain: PRK08456
>PRK08456 flagellar motor protein MotA; Validated.
Probab=100.00 E-value=0 Score=525.48 Aligned_cols=254 Identities=24% Similarity=0.306 Sum_probs=242.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 96899999999999999997099811242489999999999999998589899999999999963578899666899999
Q gi|255764488|r 1 MSTIIGLFITILCIIGGFYAMGGNPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLK 80 (290)
Q Consensus 1 l~tIiGlv~~~~~I~~g~~~~GG~l~~f~~~~sllIV~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~eli~ 80 (290)
T Consensus 3 ~~tiiGli~~~~~i~~g~~l~gg~~~~~~~~~s~lIV~GGtl~a~~i~~~~~~~~~~~~~l~~~f~~~~~~~---~~~i~ 79 (257)
T PRK08456 3 LSTILGMVLAVASISVGDILEGGNPLHVIHLSSVLIVVPTALFAAMTATHKKYVKAAYKELKIVFKNPGINL---NERIK 79 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCH---HHHHH
T ss_conf 689999999999999999985998047735507998999999999997789999999999999967999998---99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999974104744764207421145553235530620279999999999963789899999999999999999621
Q gi|255764488|r 81 LLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLK 160 (290)
Q Consensus 81 ~l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~ 160 (290)
T Consensus 80 ~lv~la~~aRk~GllaLE~~v~~~~d-----------------~Fl~~gl~l~vdG~-~~~~i~~~Le~ei~~~~~r~~~ 141 (257)
T PRK08456 80 QLVELATLARKDGVLALEGRVAQIED-----------------EFLKNGLSMLVDGK-DLEEIKESMEIQIEELEEYYHG 141 (257)
T ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCC-----------------HHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999876677667742137787-----------------69999999983799-8899999999999999999973
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 28999999999888889999999999996148978999866689999999999999999999999999999999999999
Q gi|255764488|r 161 PYHAISHMGESLPAIGIVGAILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYII 240 (290)
Q Consensus 161 ~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~ 240 (290)
T Consensus 142 ~~~~~~~~~~~aPafGmiGtvlGLI~~l~~l~d-p~~iG~~mA~ALvtTfyGvllAn~v~~PiA~KL~~~~~~e~~~~~~ 220 (257)
T PRK08456 142 AAHYWITAGETCPTMGLVGAVMGLMLALQLLDN-PAEMAAGIAGAFTATVTGIMGSYALFGPWGHKMKAKSKDIIKEKTV 220 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 368999999874588799999999999980699-9999989999999999999999999999999999789999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCCHHHHH
Q ss_conf 9999999957999689999983119967683889999
Q gi|255764488|r 241 VKKALIAYMNGAIPQVAIEYGRKVLPLSERPSIEIVA 277 (290)
Q Consensus 241 i~egi~~i~~g~~P~~~~e~l~~~lp~~~r~~~~e~~ 277 (290)
T Consensus 221 i~eGil~I~~g~nP~~i~ekL~sfL~p~~~-k~~~~~ 256 (257)
T PRK08456 221 ILEAIKGIAEGANPRDLEEKLFNFLSPGEP-KISQFE 256 (257)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCCCCC-HHHHCC
T ss_conf 999999987799869999999861896521-444303