Query gi|255764488|ref|YP_003065099.2| flagellar motor protein MotA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 290
No_of_seqs 138 out of 898
Neff 7.0
Searched_HMMs 39220
Date Sun May 29 22:43:03 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764488.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09110 flagellar motor prote 100.0 0 0 605.5 35.2 282 1-282 1-282 (283)
2 PRK12482 flagellar motor prote 100.0 0 0 573.0 35.2 286 1-286 1-286 (287)
3 PRK08124 flagellar motor prote 100.0 0 0 540.4 33.6 259 1-280 3-261 (263)
4 PRK08456 flagellar motor prote 100.0 0 0 525.5 32.5 254 1-277 3-256 (257)
5 PRK06926 flagellar motor prote 100.0 0 0 520.0 33.2 258 1-280 6-265 (272)
6 COG1291 MotA Flagellar motor c 100.0 0 0 521.0 29.6 262 1-283 3-264 (266)
7 PRK06743 flagellar motor prote 100.0 0 0 514.1 30.7 249 5-275 1-252 (254)
8 PRK09109 motC flagellar motor 100.0 0 0 507.7 33.0 244 1-266 3-246 (246)
9 PRK08990 flagellar motor prote 100.0 0 0 506.8 32.4 246 1-271 3-248 (253)
10 pfam01618 MotA_ExbB MotA/TolQ/ 99.7 1.4E-15 3.7E-20 118.1 15.2 119 123-242 16-138 (139)
11 COG0811 TolQ Biopolymer transp 99.6 1.8E-12 4.5E-17 98.5 22.5 114 139-253 96-213 (216)
12 PRK10801 colicin uptake protei 99.4 1.9E-09 4.8E-14 79.2 22.8 115 141-256 103-221 (227)
13 PRK10414 biopolymer transport 99.2 3.7E-08 9.4E-13 71.0 20.0 106 143-252 106-218 (239)
14 TIGR02796 tolQ protein TolQ; I 98.9 4E-08 1E-12 70.8 10.4 108 142-250 106-218 (219)
15 TIGR02797 exbB tonB-system ene 98.0 1.6E-05 4.1E-10 54.3 5.8 91 137-228 97-194 (213)
16 TIGR02805 exbB2 tonB-system en 97.6 0.00012 3.1E-09 48.7 5.5 78 125-216 32-114 (139)
17 PRK03982 heat shock protein Ht 94.7 0.33 8.5E-06 26.9 16.6 218 5-251 11-233 (288)
18 PRK06926 flagellar motor prote 94.3 0.41 1E-05 26.3 18.6 190 76-283 83-272 (272)
19 PRK03001 heat shock protein Ht 88.9 1.7 4.3E-05 22.4 18.0 122 15-160 19-141 (284)
20 PRK04897 heat shock protein Ht 88.4 1.8 4.7E-05 22.2 18.0 93 57-160 61-154 (298)
21 TIGR02865 spore_II_E stage II 83.9 3.1 7.9E-05 20.7 7.9 141 111-270 146-315 (794)
22 PRK03072 heat shock protein Ht 81.9 3.7 9.5E-05 20.2 16.4 94 57-161 51-145 (289)
23 TIGR01060 eno phosphopyruvate 76.7 1.5 3.9E-05 22.7 1.8 78 117-229 48-133 (430)
24 TIGR01667 YCCS_YHJK integral m 71.5 5.2 0.00013 19.3 3.5 56 212-269 332-388 (724)
25 pfam09779 DUF2349 Uncharacteri 67.6 3.9 1E-04 20.1 2.2 38 249-286 76-113 (129)
26 TIGR02546 III_secr_ATP type II 67.1 8.9 0.00023 17.8 9.5 179 50-283 221-428 (430)
27 KOG1373 consensus 65.2 3.2 8.1E-05 20.7 1.3 11 257-267 409-419 (476)
28 PRK01345 heat shock protein Ht 62.9 11 0.00027 17.3 15.7 121 16-160 20-141 (314)
29 TIGR00710 efflux_Bcr_CflA drug 61.9 8.5 0.00022 17.9 3.0 49 3-53 133-185 (400)
30 TIGR00895 2A0115 MFS transport 58.0 13 0.00033 16.8 5.7 57 200-256 298-355 (413)
31 KOG3972 consensus 55.7 11 0.00027 17.3 2.6 44 173-217 115-172 (252)
32 KOG3762 consensus 51.6 16 0.00042 16.1 3.9 16 208-223 527-542 (618)
33 PRK01030 tetrahydromethanopter 49.1 18 0.00046 15.9 6.2 16 4-19 17-32 (266)
34 COG1299 FruA Phosphotransferas 48.9 18 0.00046 15.9 3.4 92 163-262 162-269 (343)
35 cd05089 PTKc_Tie1 Catalytic Do 48.3 18 0.00045 15.9 2.8 36 254-289 244-281 (297)
36 pfam10255 Paf67 RNA polymerase 40.9 24 0.00061 15.1 4.9 83 185-267 142-242 (402)
37 PRK09534 btuF corrinoid ABC tr 40.6 14 0.00037 16.5 1.3 20 139-158 172-191 (364)
38 COG4061 MtrC Tetrahydromethano 40.5 23 0.00058 15.2 2.4 20 198-217 202-222 (262)
39 COG4129 Predicted membrane pro 40.3 25 0.00063 15.0 8.1 24 25-48 121-144 (332)
40 PRK11268 pstA phosphate transp 39.8 25 0.00064 15.0 8.9 14 42-55 91-104 (292)
41 pfam06897 DUF1269 Protein of u 38.7 19 0.00049 15.7 1.8 16 28-44 15-30 (102)
42 cd07354 HN_L-delphilin-R1_like 38.1 27 0.00068 14.8 3.0 38 239-276 40-77 (80)
43 COG3892 Uncharacterized protei 37.9 27 0.00068 14.8 2.8 56 38-99 117-173 (310)
44 COG4591 LolE ABC-type transpor 37.7 27 0.00069 14.8 8.3 41 187-227 304-349 (408)
45 cd05116 PTKc_Syk Catalytic Dom 37.7 27 0.00069 14.8 3.1 30 254-283 224-255 (257)
46 PRK08268 3-hydroxybutyryl-CoA 37.5 27 0.00069 14.7 4.0 62 74-149 159-220 (503)
47 PRK02391 heat shock protein Ht 37.2 27 0.0007 14.7 17.4 95 55-160 56-151 (297)
48 PRK01265 heat shock protein Ht 36.3 28 0.00072 14.6 16.0 22 138-159 134-155 (326)
49 TIGR01083 nth endonuclease III 35.8 19 0.00047 15.8 1.3 36 246-284 146-181 (192)
50 TIGR00763 lon ATP-dependent pr 35.1 25 0.00063 15.0 1.9 26 139-165 254-279 (941)
51 cd05044 PTKc_c-ros Catalytic D 34.5 30 0.00077 14.4 2.9 29 254-282 240-270 (270)
52 pfam11299 DUF3100 Protein of u 34.5 30 0.00077 14.4 5.9 50 179-230 189-238 (239)
53 TIGR02545 ATP_syn_fliI flagell 33.8 31 0.00079 14.4 5.2 181 49-283 225-437 (439)
54 COG4803 Predicted membrane pro 33.5 29 0.00075 14.5 2.0 84 178-269 68-152 (170)
55 cd05056 PTKc_FAK Catalytic Dom 32.4 33 0.00084 14.2 3.1 35 254-288 234-270 (270)
56 cd05070 PTKc_Fyn_Yrk Catalytic 32.4 33 0.00084 14.2 2.9 32 252-283 227-260 (260)
57 cd05034 PTKc_Src_like Catalyti 32.0 33 0.00085 14.2 3.2 30 254-283 230-261 (261)
58 cd05115 PTKc_Zap-70 Catalytic 31.6 34 0.00086 14.1 3.1 32 252-283 222-255 (257)
59 PRK00972 tetrahydromethanopter 31.0 34 0.00088 14.1 2.8 22 34-55 67-88 (293)
60 cd05110 PTKc_HER4 Catalytic Do 30.6 32 0.00081 14.3 1.8 32 254-285 237-270 (303)
61 pfam10367 Vps39_2 Vacuolar sor 30.5 35 0.0009 14.0 4.5 58 99-156 6-63 (109)
62 cd06620 PKc_MAPKK_Byr1_like Pr 29.7 36 0.00093 13.9 2.1 24 254-277 239-264 (284)
63 TIGR03644 marine_trans_1 proba 29.6 36 0.00093 13.9 4.3 31 194-224 345-375 (404)
64 PRK09204 secY preprotein trans 29.5 35 0.0009 14.0 1.9 20 252-272 328-350 (427)
65 TIGR02770 nickel_nikD nickel i 28.8 38 0.00096 13.8 3.0 70 40-122 67-138 (239)
66 PRK07660 consensus 28.8 38 0.00096 13.8 3.8 31 117-147 188-218 (283)
67 KOG0760 consensus 27.9 39 0.00099 13.7 3.2 62 196-259 209-276 (302)
68 pfam05237 MoeZ_MoeB MoeZ/MoeB 27.8 26 0.00065 14.9 0.9 20 172-191 16-35 (77)
69 cd01487 E1_ThiF_like E1_ThiF_l 27.3 23 0.00057 15.3 0.6 78 112-191 72-171 (174)
70 PRK07530 3-hydroxybutyryl-CoA 27.1 40 0.001 13.7 4.1 17 124-140 196-212 (292)
71 COG1575 MenA 1,4-dihydroxy-2-n 26.2 42 0.0011 13.5 5.3 23 170-193 178-200 (303)
72 pfam04206 MtrE Tetrahydrometha 26.2 42 0.0011 13.5 2.9 29 196-224 124-152 (269)
73 TIGR02615 spoVE stage V sporul 26.0 42 0.0011 13.5 8.8 177 21-271 30-217 (356)
74 PRK09260 3-hydroxybutyryl-CoA 25.9 42 0.0011 13.5 4.1 31 117-147 188-218 (289)
75 cd05055 PTKc_PDGFR Catalytic D 25.8 43 0.0011 13.5 3.0 46 238-283 254-301 (302)
76 cd05075 PTKc_Axl Catalytic Dom 25.3 43 0.0011 13.4 2.2 29 255-283 241-271 (272)
77 cd06605 PKc_MAPKK Protein kina 25.2 26 0.00066 14.9 0.5 23 256-278 232-256 (265)
78 KOG4249 consensus 24.7 45 0.0011 13.4 2.2 84 200-283 176-260 (408)
79 cd05060 PTKc_Syk_like Catalyti 24.5 45 0.0011 13.3 3.6 32 253-284 223-256 (257)
80 cd05049 PTKc_Trk Catalytic Dom 24.4 45 0.0012 13.3 3.0 29 254-282 250-280 (280)
81 TIGR00393 kpsF sugar isomerase 24.4 34 0.00087 14.1 1.0 17 19-35 22-38 (272)
82 PRK09117 consensus 24.2 46 0.0012 13.3 3.6 24 122-145 192-215 (282)
83 cd05100 PTKc_FGFR3 Catalytic D 24.1 46 0.0012 13.3 2.4 68 211-284 222-294 (334)
84 pfam11239 DUF3040 Protein of u 23.8 46 0.0012 13.3 4.4 20 173-192 42-61 (82)
85 PRK08269 3-hydroxybutyryl-CoA 23.7 46 0.0012 13.3 4.1 58 77-148 159-216 (311)
86 PRK09765 2-O-a-mannosyl-D-glyc 23.6 47 0.0012 13.2 6.7 98 163-263 446-554 (638)
87 PRK06130 3-hydroxybutyryl-CoA 23.6 47 0.0012 13.2 3.9 36 114-149 182-217 (310)
88 cd05052 PTKc_Abl Catalytic Dom 23.2 48 0.0012 13.2 3.2 30 254-283 231-262 (263)
89 PRK05808 3-hydroxybutyryl-CoA 23.1 48 0.0012 13.2 3.9 25 122-146 193-217 (282)
90 PRK13428 F0F1 ATP synthase sub 22.9 48 0.0012 13.2 2.8 18 1-18 1-18 (445)
91 pfam11166 DUF2951 Protein of u 22.6 49 0.0012 13.1 9.5 77 108-213 21-97 (97)
92 PRK05922 type III secretion sy 21.9 51 0.0013 13.0 5.7 59 223-283 365-430 (434)
93 COG5505 Predicted integral mem 21.6 51 0.0013 13.0 9.5 59 20-78 84-142 (384)
94 pfam08427 DUF1741 Domain of un 21.5 49 0.0013 13.1 1.4 20 48-67 56-75 (237)
95 cd05097 PTKc_DDR_like Catalyti 21.4 52 0.0013 13.0 2.9 29 254-282 265-295 (295)
96 pfam05818 TraT Enterobacterial 21.2 52 0.0013 12.9 3.3 45 176-220 90-134 (215)
97 COG4214 XylH ABC-type xylose t 20.9 53 0.0014 12.9 2.8 73 173-247 295-381 (394)
98 cd05085 PTKc_Fer Catalytic Dom 20.9 53 0.0014 12.9 2.6 29 253-281 219-249 (250)
99 PRK10263 DNA translocase FtsK; 20.9 53 0.0014 12.9 4.2 27 19-45 140-168 (1355)
100 cd05093 PTKc_TrkB Catalytic Do 20.7 53 0.0014 12.9 3.4 35 254-288 248-284 (288)
101 COG2427 Uncharacterized conser 20.3 54 0.0014 12.8 10.3 103 76-197 25-128 (148)
102 cd05074 PTKc_Tyro3 Catalytic D 20.3 55 0.0014 12.8 3.4 29 254-282 241-271 (273)
103 TIGR00851 mtlA PTS system, man 20.3 44 0.0011 13.4 0.9 14 199-221 216-229 (341)
104 pfam05844 YopD YopD protein. T 20.2 55 0.0014 12.8 10.1 75 72-189 70-144 (296)
105 cd05069 PTKc_Yes Catalytic Dom 20.0 55 0.0014 12.8 3.1 31 253-283 228-260 (260)
No 1
>PRK09110 flagellar motor protein MotA; Validated
Probab=100.00 E-value=0 Score=605.52 Aligned_cols=282 Identities=40% Similarity=0.735 Sum_probs=278.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 96899999999999999997099811242489999999999999998589899999999999963578899666899999
Q gi|255764488|r 1 MSTIIGLFITILCIIGGFYAMGGNPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLK 80 (290)
Q Consensus 1 l~tIiGlv~~~~~I~~g~~~~GG~l~~f~~~~sllIV~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~eli~ 80 (290)
|.+|||+++++++|++|++++||+++.||||+|++||+|||++|++++||+++++++++.++++|+++.++++++.|++.
T Consensus 1 M~~iiGlv~~~~~i~~g~~l~Gg~~~~~~~~~s~lIV~Ggtlga~li~~p~~~i~~~~~~~~~~f~~~~~~~~~~~e~i~ 80 (283)
T PRK09110 1 MLIIIGYIVVLGSVFGGYLLAGGHLGALIQPFELLIIGGAALGAFIVGNPGKAIKATLKALPKVFKGPKYKKADYMDLLA 80 (283)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 92099999999999999995489842884644799588789999999788999999999999995687898143899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999974104744764207421145553235530620279999999999963789899999999999999999621
Q gi|255764488|r 81 LLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLK 160 (290)
Q Consensus 81 ~l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~ 160 (290)
++++|++++||+|+++||+|+|||++|++|++||.+++|++..+|+|||+|+++||+.+++++|++|++|++.+++||+.
T Consensus 81 ~l~~la~~aRr~GllaLE~~ie~p~~s~if~~~p~~~~d~~~~~fi~dgl~l~vdg~~~~~~i~~iLe~ei~~~~~r~~~ 160 (283)
T PRK09110 81 LLYELLRKARQEGMMALEAHIENPEESPIFAKYPKILADHHLVEFICDYLRLMISGNMNPHEIEALMDEEIETHHHEAEV 160 (283)
T ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHCHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999986249999877448421367772315531503789999878999658999899999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 28999999999888889999999999996148978999866689999999999999999999999999999999999999
Q gi|255764488|r 161 PYHAISHMGESLPAIGIVGAILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYII 240 (290)
Q Consensus 161 ~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~ 240 (290)
++++|++||+|||||||+|||+|||+||+|+++||+.||++||+||+|||||+++||++|+|+|+||+.++++|...+++
T Consensus 161 ~~~~~~~~g~~aPa~GmiGtviGLI~~l~~l~~~p~~lG~~mAvALvtT~YGv~lAn~i~~PiA~kL~~~~~~e~~~~~~ 240 (283)
T PRK09110 161 PAHALQTVADALPAFGIVAAVLGVVKTMGSIDQPPAVLGALIGAALVGTFLGILLAYGFVGPLAAKLEQVVEEDTKMYQC 240 (283)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999987728889999999999998448998999889999999999999999999999999999889999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCCHHHHHHHHHH
Q ss_conf 999999995799968999998311996768388999999970
Q gi|255764488|r 241 VKKALIAYMNGAIPQVAIEYGRKVLPLSERPSIEIVAQEVLQ 282 (290)
Q Consensus 241 i~egi~~i~~g~~P~~~~e~l~~~lp~~~r~~~~e~~~~~~~ 282 (290)
|+||+++||+|+|||+++|++|+||||++||+|+|+|++++.
T Consensus 241 i~eGilai~~G~nPrv~~E~lr~~lp~~~rps~~e~e~~~~~ 282 (283)
T PRK09110 241 IKVTLLASLNGYAPQIAVEFGRKTLPSTERPSFAELEEHVRG 282 (283)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHC
T ss_conf 999999985899949999998832891209999999998746
No 2
>PRK12482 flagellar motor protein MotA; Provisional
Probab=100.00 E-value=0 Score=572.99 Aligned_cols=286 Identities=30% Similarity=0.576 Sum_probs=282.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 96899999999999999997099811242489999999999999998589899999999999963578899666899999
Q gi|255764488|r 1 MSTIIGLFITILCIIGGFYAMGGNPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLK 80 (290)
Q Consensus 1 l~tIiGlv~~~~~I~~g~~~~GG~l~~f~~~~sllIV~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~eli~ 80 (290)
|..|||+++++++|++||+++||+++.||||++++||+|||+||++++||+++++++++.++.+|+++++++++|.|++.
T Consensus 1 M~~iiGliv~~~~v~gg~~l~GG~l~~l~qp~e~lII~GgtigA~li~~p~~~lk~~~~~l~~~f~~~~~~~~~~~~ll~ 80 (287)
T PRK12482 1 MQKLFGLLVIMGCVFGGYLMSGGSLSSIWQPGEIIIIFGAGIGALILGNPKSVLKEMWHQIKGVIRRKEYGVEFQRQLLL 80 (287)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 92099999999999999997389725986888899999899999977087999999999999986376788678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999974104744764207421145553235530620279999999999963789899999999999999999621
Q gi|255764488|r 81 LLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLK 160 (290)
Q Consensus 81 ~l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~ 160 (290)
++++|++++||+|+++||+|+|+|++|++|++||.+++|++..+|+||++|++++|+.+++++|++||.|++.+++||+.
T Consensus 81 ll~~l~~~aRr~GllaLE~~ie~pe~s~iF~~~p~i~~d~~~~~fi~D~lrl~v~g~~~~~~i~~iLe~ei~~~~~~~~~ 160 (287)
T PRK12482 81 LLYELLEMVDEGGLKRLDQHIEIPENSSLFQKYPLILQDKHLITFISDNFRLMAMGKINQHELEGILEQELSAVEEELLQ 160 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998369999987607322277762504413504789998527887168989899999999999999999865
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 28999999999888889999999999996148978999866689999999999999999999999999999999999999
Q gi|255764488|r 161 PYHAISHMGESLPAIGIVGAILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYII 240 (290)
Q Consensus 161 ~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~ 240 (290)
++++|++||+|+|||||+|||+|||+||+|||+||+.||++||+||+|||||+++||++|+|+|+||+.++++|..++++
T Consensus 161 ~~~~~~~~g~~aPa~GIvgaVlGlI~~M~~l~~~pa~LG~~IA~ALVgTfyGi~lAy~~~~PiA~kLk~~~~~e~~~~~~ 240 (287)
T PRK12482 161 PSRSLQRIAEAMPGFGICAAVLGIIITMQSIDGSIAEIGLKVAAALVGTFLGVFICYCLMDPLSNAMEQEIKKELSLLEC 240 (287)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 68999999865733369999999999998348999999999999999999999999998988999999999999899999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCCHHHHHHHHHHCCCC
Q ss_conf 9999999957999689999983119967683889999999702434
Q gi|255764488|r 241 VKKALIAYMNGAIPQVAIEYGRKVLPLSERPSIEIVAQEVLQYNHN 286 (290)
Q Consensus 241 i~egi~~i~~g~~P~~~~e~l~~~lp~~~r~~~~e~~~~~~~~~~~ 286 (290)
|+++++++++|++|+++.|.+|+.+|++.||+|+|+|+++++.+.+
T Consensus 241 ik~~l~A~~~G~~P~~avE~gRk~i~~~~rPsf~ele~~~~~~~~~ 286 (287)
T PRK12482 241 VRTVLVAHVAGKPTLLAVDAGRKLLPLDNKPTFATLDSWINKMITA 286 (287)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 9999999727999399999987118977798989999999986408
No 3
>PRK08124 flagellar motor protein MotA; Validated
Probab=100.00 E-value=0 Score=540.40 Aligned_cols=259 Identities=24% Similarity=0.397 Sum_probs=248.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 96899999999999999997099811242489999999999999998589899999999999963578899666899999
Q gi|255764488|r 1 MSTIIGLFITILCIIGGFYAMGGNPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLK 80 (290)
Q Consensus 1 l~tIiGlv~~~~~I~~g~~~~GG~l~~f~~~~sllIV~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~eli~ 80 (290)
++||||++++++++++|++++||+++.|||++|++||+|||++|++++||+++++++++.++.+|+.++. .++.|+++
T Consensus 3 ~~tiiGli~~~~~i~~g~~~~Gg~~~~~~~~~s~lIV~GGt~~a~li~~p~~~i~~~~~~~~~~f~~~~~--~~~~~li~ 80 (263)
T PRK08124 3 ITTIIGLILGLIAVVVGMVVKGASLAVLLNPAAALIIIVGTIAAVMIAFPMSELKKVPKLFKVLFSEKKD--LSKEELLE 80 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC--CCHHHHHH
T ss_conf 6899999999999999999749985888466579988989999999968899999999999999538887--89999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999974104744764207421145553235530620279999999999963789899999999999999999621
Q gi|255764488|r 81 LLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLK 160 (290)
Q Consensus 81 ~l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~ 160 (290)
++++|++++||+|+++||++++++++ +|+|+|++|++||+ ++++++++|++|++.+++||+.
T Consensus 81 ~l~~la~~aRk~GllaLE~~i~~~~d-----------------~Fl~~gl~l~vdG~-~~~~i~~~L~~ei~~~~~r~~~ 142 (263)
T PRK08124 81 LFVEWASESRREGLLALEQQLDEIDD-----------------PFLKRGMKMVIDGQ-SAEFIRDVLEEEIEAMEERHAA 142 (263)
T ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCC-----------------HHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999987476768876506687-----------------89998589852899-9999999999999999999873
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 28999999999888889999999999996148978999866689999999999999999999999999999999999999
Q gi|255764488|r 161 PYHAISHMGESLPAIGIVGAILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYII 240 (290)
Q Consensus 161 ~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~ 240 (290)
++++|++||+|||||||+|||+|||+||+|++| |++||++||+||+|||||+++||+||+|+|+|++.++++|..+++|
T Consensus 143 ~~~v~~~~~~~aPafGmiGtvlGLI~~L~~l~d-p~~iG~~mA~ALvtT~yGvllAn~~~~PiA~kl~~~~~~e~~~~~~ 221 (263)
T PRK08124 143 GAAIFTQAGTYAPTLGVLGAVIGLIAALGNLND-IEKLGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKEEIEKKYI 221 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 147999999873677599999999999872599-9999988999999999999999999988999999899999999899
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCCHHHHHHHH
Q ss_conf 9999999957999689999983119967683889999999
Q gi|255764488|r 241 VKKALIAYMNGAIPQVAIEYGRKVLPLSERPSIEIVAQEV 280 (290)
Q Consensus 241 i~egi~~i~~g~~P~~~~e~l~~~lp~~~r~~~~e~~~~~ 280 (290)
|+||+++|++|+||++++|+|++||||++||+++|.+|+.
T Consensus 222 i~egil~i~~g~~P~~i~e~L~~~L~p~~r~~~~e~~e~~ 261 (263)
T PRK08124 222 IIEGVLAIQEGNAPRIIEEKLLGYLSPKERKKLEEGAEKN 261 (263)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCHHHCHHHHHHHHHC
T ss_conf 9999999868998799999998609962364358765412
No 4
>PRK08456 flagellar motor protein MotA; Validated
Probab=100.00 E-value=0 Score=525.48 Aligned_cols=254 Identities=24% Similarity=0.306 Sum_probs=242.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 96899999999999999997099811242489999999999999998589899999999999963578899666899999
Q gi|255764488|r 1 MSTIIGLFITILCIIGGFYAMGGNPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLK 80 (290)
Q Consensus 1 l~tIiGlv~~~~~I~~g~~~~GG~l~~f~~~~sllIV~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~eli~ 80 (290)
++||+|+++++++|++|+++.||++..|||++|++||+|||++|++++||+++++++++.++++|+++++++ .++++
T Consensus 3 ~~tiiGli~~~~~i~~g~~l~gg~~~~~~~~~s~lIV~GGtl~a~~i~~~~~~~~~~~~~l~~~f~~~~~~~---~~~i~ 79 (257)
T PRK08456 3 LSTILGMVLAVASISVGDILEGGNPLHVIHLSSVLIVVPTALFAAMTATHKKYVKAAYKELKIVFKNPGINL---NERIK 79 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCH---HHHHH
T ss_conf 689999999999999999985998047735507998999999999997789999999999999967999998---99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999974104744764207421145553235530620279999999999963789899999999999999999621
Q gi|255764488|r 81 LLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLK 160 (290)
Q Consensus 81 ~l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~ 160 (290)
++++|++++||+|+++||++++++++ +|+|+++||++||+ +++++|++|+.|++.+++||+.
T Consensus 80 ~lv~la~~aRk~GllaLE~~v~~~~d-----------------~Fl~~gl~l~vdG~-~~~~i~~~Le~ei~~~~~r~~~ 141 (257)
T PRK08456 80 QLVELATLARKDGVLALEGRVAQIED-----------------EFLKNGLSMLVDGK-DLEEIKESMEIQIEELEEYYHG 141 (257)
T ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCC-----------------HHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999876677667742137787-----------------69999999983799-8899999999999999999973
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 28999999999888889999999999996148978999866689999999999999999999999999999999999999
Q gi|255764488|r 161 PYHAISHMGESLPAIGIVGAILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYII 240 (290)
Q Consensus 161 ~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~ 240 (290)
++++|++||+|||||||+|||+|||+||+|++| |+.||++||+||+|||||+++||+||+|+|+|++.++++|...+++
T Consensus 142 ~~~~~~~~~~~aPafGmiGtvlGLI~~l~~l~d-p~~iG~~mA~ALvtTfyGvllAn~v~~PiA~KL~~~~~~e~~~~~~ 220 (257)
T PRK08456 142 AAHYWITAGETCPTMGLVGAVMGLMLALQLLDN-PAEMAAGIAGAFTATVTGIMGSYALFGPWGHKMKAKSKDIIKEKTV 220 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 368999999874588799999999999980699-9999989999999999999999999999999999789999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCCHHHHH
Q ss_conf 9999999957999689999983119967683889999
Q gi|255764488|r 241 VKKALIAYMNGAIPQVAIEYGRKVLPLSERPSIEIVA 277 (290)
Q Consensus 241 i~egi~~i~~g~~P~~~~e~l~~~lp~~~r~~~~e~~ 277 (290)
|+||+++|++|+||++++|+|++||||++| ++.+.|
T Consensus 221 i~eGil~I~~g~nP~~i~ekL~sfL~p~~~-k~~~~~ 256 (257)
T PRK08456 221 ILEAIKGIAEGANPRDLEEKLFNFLSPGEP-KISQFE 256 (257)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCCCCC-HHHHCC
T ss_conf 999999987799869999999861896521-444303
No 5
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=100.00 E-value=0 Score=519.96 Aligned_cols=258 Identities=18% Similarity=0.241 Sum_probs=239.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 96899999999999999997099--8112424899999999999999985898999999999999635788996668999
Q gi|255764488|r 1 MSTIIGLFITILCIIGGFYAMGG--NPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDV 78 (290)
Q Consensus 1 l~tIiGlv~~~~~I~~g~~~~GG--~l~~f~~~~sllIV~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~el 78 (290)
++|++|+++++++++++++..++ ++..|||++|++||+|||++|++++||+++++++++.++.+|++++. ++.++
T Consensus 6 ~~TiiGli~G~~~v~~~i~~g~~~~g~~~f~~~~s~lIV~GGtl~a~lis~p~~~i~~~~~~~~~~f~~~~~---~~~~~ 82 (272)
T PRK06926 6 YLTPVGFILGITILVLGIVSGSGLSGISSFIDLTSFFIVTGGLCAAVFISFSPKDLKKAPRVLKQAFIRQED---DVKEL 82 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC---CHHHH
T ss_conf 899999999999999999977537779999566179989989999999978999999999999998658888---99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999741047447642074211455532355306202799999999999637898999999999999999996
Q gi|255764488|r 79 LKLLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEK 158 (290)
Q Consensus 79 i~~l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~ 158 (290)
++++++|++++||+|+++||+++++++ +||+++|++|++||+ +++++|++|++|++.+++||
T Consensus 83 i~~l~~la~~aRk~GllaLE~~~~~~~-----------------dpFl~~gl~l~vdg~-~~~~i~~iLe~ei~~~~~r~ 144 (272)
T PRK06926 83 VQTFVSLSEQARREGLLSLDAQLDEVK-----------------DPFLKKGLLLAIDGW-DEETIRDVMDSEIAAMEERH 144 (272)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHCCCC-----------------CHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999998756765887650657-----------------879998899985899-99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21289999999998888899999999999961489789998666899999999999999999999999999999999999
Q gi|255764488|r 159 LKPYHAISHMGESLPAIGIVGAILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLY 238 (290)
Q Consensus 159 ~~~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~ 238 (290)
++++++|++||+|||||||+|||+|||+||+|++| |++|||+||+||+|||||+++||++|+|+|+|++.++++|...+
T Consensus 145 ~~~~~~~~~~g~~aPafGmiGTviGLI~mL~~l~d-p~~iG~~mAvALvtTlYGv~lAn~~f~PiA~KL~~~~~~e~~~~ 223 (272)
T PRK06926 145 RKGRRLFEKAGEFAPAWGMIGTLVGLVLMLKNLND-PHTLGPNMAVALLTTLYGTLLANLVFIPIAAKLEEKTESEIFIK 223 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88889999999872588799999999999881699-99998888999999999999999999889999998889999998
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCCHHHHHHHH
Q ss_conf 999999999957999689999983119967683889999999
Q gi|255764488|r 239 IIVKKALIAYMNGAIPQVAIEYGRKVLPLSERPSIEIVAQEV 280 (290)
Q Consensus 239 ~~i~egi~~i~~g~~P~~~~e~l~~~lp~~~r~~~~e~~~~~ 280 (290)
+|++||+++|++|+|||+++|+|++||||++|.+.+....+.
T Consensus 224 ~miieGil~I~~g~nP~~ie~kL~sfL~p~~r~~~~~~~~~~ 265 (272)
T PRK06926 224 QVMIEGIIGVQSGQNPRNLESQLVVFSSKEDWQKKRADRSKK 265 (272)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHCCCHHHH
T ss_conf 999999999877998499999999749988886650005677
No 6
>COG1291 MotA Flagellar motor component [Cell motility and secretion]
Probab=100.00 E-value=0 Score=521.03 Aligned_cols=262 Identities=39% Similarity=0.603 Sum_probs=252.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 96899999999999999997099811242489999999999999998589899999999999963578899666899999
Q gi|255764488|r 1 MSTIIGLFITILCIIGGFYAMGGNPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLK 80 (290)
Q Consensus 1 l~tIiGlv~~~~~I~~g~~~~GG~l~~f~~~~sllIV~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~eli~ 80 (290)
|+||||+++++++|++|+++.||+++.||||+|++||+||+++|++++||++++|++++.++.+|+ ++++.+|.|++.
T Consensus 3 m~tiiGlvl~~~~i~~G~i~~Gg~~~~l~~~~s~lII~gg~i~A~~~~~p~~~vk~~~k~~~~~F~--~~k~~~~~~li~ 80 (266)
T COG1291 3 MLTIIGLVLAFGSVLGGYILGGGSLGALIQPSSLLIIVGGGIGAFMVGNPGKVVKATPKALKEAFR--KPKKEDYVDLIA 80 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHEEECHHHHHHHHCCCHHHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_conf 788999999999999989726886235405123320302157898862868999999999999984--576202999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999974104744764207421145553235530620279999999999963789899999999999999999621
Q gi|255764488|r 81 LLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLK 160 (290)
Q Consensus 81 ~l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~ 160 (290)
++++|+.++||+|+++||... |+..++|+|||+||+|||.+ ++++|++||.|++.+++||++
T Consensus 81 ~l~~la~~~Rk~GllaLE~~~-----------------~~~~d~Fi~~glrliVdG~~-~~~I~~~me~Ei~~~ee~~~~ 142 (266)
T COG1291 81 LLYELAEKARKEGLLALEALA-----------------DEIEDPFIKDGLRLIVDGND-PEEIEALMEEEIETMEERHEK 142 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------HHCCCHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999870187799888-----------------62414589966798715898-899999999999999998753
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 28999999999888889999999999996148978999866689999999999999999999999999999999999999
Q gi|255764488|r 161 PYHAISHMGESLPAIGIVGAILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYII 240 (290)
Q Consensus 161 ~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~ 240 (290)
++++|+++|+|||||||+|||+|||+||+||+| |+.||++||+||+|||||+++||++|.|+|+||++++++|.+.++|
T Consensus 143 ~a~~~~~~g~~aPa~GivgaV~GlI~~l~~l~~-p~~LG~~iA~Alv~T~~Gi~~ay~~~~P~a~kLk~~~~~e~~~~~~ 221 (266)
T COG1291 143 PAHAFTTAGDYAPAFGIVGAVMGLIHALGNLDD-PAELGALIAAALVGTLYGIFLAYGLFGPLANKLKQKSDEEVKLKEI 221 (266)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999988458266699999999999882799-7888889999999999999999897868899998888999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCCHHHHHHHHHHC
Q ss_conf 9999999957999689999983119967683889999999702
Q gi|255764488|r 241 VKKALIAYMNGAIPQVAIEYGRKVLPLSERPSIEIVAQEVLQY 283 (290)
Q Consensus 241 i~egi~~i~~g~~P~~~~e~l~~~lp~~~r~~~~e~~~~~~~~ 283 (290)
|+||++++|+|+|||+++|+++.||+|++||++.|+||+.++.
T Consensus 222 i~e~ll~i~~G~nP~i~~e~l~~~L~~~er~~~~e~e~~~~~~ 264 (266)
T COG1291 222 IIEGLLAIQNGENPRILEEKLRKFLSPKERPSFAELEEEVRGE 264 (266)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
T ss_conf 9999999954899488999988628912276568899986467
No 7
>PRK06743 flagellar motor protein MotP; Reviewed
Probab=100.00 E-value=0 Score=514.13 Aligned_cols=249 Identities=19% Similarity=0.277 Sum_probs=234.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99999999999999970998112---424899999999999999985898999999999999635788996668999999
Q gi|255764488|r 5 IGLFITILCIIGGFYAMGGNPYI---LIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLKL 81 (290)
Q Consensus 5 iGlv~~~~~I~~g~~~~GG~l~~---f~~~~sllIV~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~eli~~ 81 (290)
||++++++++++++++.||+++. |||++|++||+|||++|++++||+++++++++.++++|+.++.+ +.+++++
T Consensus 1 iGl~~g~~~v~~~~~l~gg~~~~l~~f~~~~s~lIV~GGt~~a~li~~~~~~i~~~~~~~~~~~~~~~~~---~~~~i~~ 77 (254)
T PRK06743 1 VGIIVGFAIVIAAIMLGGGGIKAFKNFLDVSSILIVIGGTTATIVVAYRFGEIKKYTKSIFTVLHRREED---LEQLTDL 77 (254)
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC---HHHHHHH
T ss_conf 9247999999999998187477887414705668457799999999778999999999999996677789---9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999741047447642074211455532355306202799999999999637898999999999999999996212
Q gi|255764488|r 82 LYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLKP 161 (290)
Q Consensus 82 l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~~ 161 (290)
+++|++++||+|+++||+++++.+ +||+|+|+||++||+ +++++|++|++|++.+++||+.+
T Consensus 78 lv~la~~aRk~GllaLE~~~~~~~-----------------dpFl~~gl~l~vdG~-d~~~i~~~L~~ei~~~~~r~~~~ 139 (254)
T PRK06743 78 FVDFSKKSKKHGLLSLEVDGEQVD-----------------NPFIQKGIRLMLSGY-DEDELKEVLMKDVETEVYELRKG 139 (254)
T ss_pred HHHHHHHHHHCHHHHHHHHHCCCC-----------------CHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999985430877776532379-----------------889999999982799-99999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999998888899999999999961489789998666899999999999999999999999999999999999999
Q gi|255764488|r 162 YHAISHMGESLPAIGIVGAILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYIIV 241 (290)
Q Consensus 162 ~~~~~~~a~~aPafGmiGTviGLI~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~i 241 (290)
+++|++||+|||||||+|||+|||+||+|++| |++|||+||+||+|||||+++||++|+|+|+|++.++++|...++||
T Consensus 140 ~~v~~~~g~~APafGmiGTviGLI~mL~~l~d-p~~iG~~mAvAlvtTlYG~~lAnl~flPiA~KL~~~~~~e~~~~~mi 218 (254)
T PRK06743 140 AALLDKIGDFAPAWGMIGTLIGLIIMLQNLQD-TSQIGTGMAVAMLTTLYGSVLANMIAIPLAEKVYRGIEDLYTEKKFV 218 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999764378899999999999872699-99998999999999999999999999999999998899999998999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHCCCHHHCCCHHH
Q ss_conf 9999999579996899999831199676838899
Q gi|255764488|r 242 KKALIAYMNGAIPQVAIEYGRKVLPLSERPSIEI 275 (290)
Q Consensus 242 ~egi~~i~~g~~P~~~~e~l~~~lp~~~r~~~~e 275 (290)
+||+++|++|+||+.++|+|++||||++|.+.++
T Consensus 219 iEGil~I~~genP~~ie~kL~sfL~~~~~~~~~~ 252 (254)
T PRK06743 219 IEAISELYRGQIPSKLKLKLDTYVYETKIKKVKR 252 (254)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHC
T ss_conf 9999998879986999999998589576787761
No 8
>PRK09109 motC flagellar motor protein; Reviewed
Probab=100.00 E-value=0 Score=507.68 Aligned_cols=244 Identities=25% Similarity=0.378 Sum_probs=234.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 96899999999999999997099811242489999999999999998589899999999999963578899666899999
Q gi|255764488|r 1 MSTIIGLFITILCIIGGFYAMGGNPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLK 80 (290)
Q Consensus 1 l~tIiGlv~~~~~I~~g~~~~GG~l~~f~~~~sllIV~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~eli~ 80 (290)
++||+|++++++++++|+++.||+++.|||++|++||+|||++|++++||+++++++++.++++|++++.+ +.++++
T Consensus 3 ~~tiiGlv~~~~~i~~g~~~~gg~~~~~~~~~s~lIV~GGt~~A~li~~p~~~~~~~~~~~~~~f~~~~~~---~~~~i~ 79 (246)
T PRK09109 3 VLSLIGLILAFVAIIGGNFLEGGHLGSLLNGPAALIVIGGTLGAVLLQTPLSVFKRAFKILRWVFFPPRSD---LEGGID 79 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC---HHHHHH
T ss_conf 78999999999999999998499738886455899999999999998088999999999999985688899---999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999974104744764207421145553235530620279999999999963789899999999999999999621
Q gi|255764488|r 81 LLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLK 160 (290)
Q Consensus 81 ~l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~ 160 (290)
++++|++++||+|+++||+++|++++ ||+++++|+++||+ +++++|++|++|++.+++||++
T Consensus 80 ~l~~la~~aR~~GllaLE~~i~~~~d-----------------~Fl~~gl~l~vdg~-~~~~i~~~L~~ei~~~~~r~~~ 141 (246)
T PRK09109 80 RIVEWSMTARKEGLLGLEDVADREPD-----------------PFARKGLQLLVDGA-EPESIRSVLEVEIDTQEHRDLQ 141 (246)
T ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCC-----------------HHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999976453115666316688-----------------69998899985799-9999999999999999999982
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 28999999999888889999999999996148978999866689999999999999999999999999999999999999
Q gi|255764488|r 161 PYHAISHMGESLPAIGIVGAILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYII 240 (290)
Q Consensus 161 ~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~ 240 (290)
++++|++||+|||||||+|||+|||+||+|++| |+.|||+||+||+|||||+++||+||+|+|+|++.++++|...+++
T Consensus 142 ~~~~~~~~g~~aPafGmiGtviGLI~mL~~l~d-p~~lG~~mA~ALvtT~yGv~lAn~v~~PiA~kl~~~~~~e~~~~~~ 220 (246)
T PRK09109 142 AAKVFESMGGYAPTIGIIGAVMGLIHVMENLAD-PSQLGSGIAVAFVATIYGVASANLLFLPVANKLKSVIARQSRYREM 220 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 778999999872676499999999999880699-9999988799999999999999999988999999999999999899
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 99999999579996899999831199
Q gi|255764488|r 241 VKKALIAYMNGAIPQVAIEYGRKVLP 266 (290)
Q Consensus 241 i~egi~~i~~g~~P~~~~e~l~~~lp 266 (290)
++||++++++|+||++++|+|++||+
T Consensus 221 i~egil~i~~g~~P~~i~~kL~s~L~ 246 (246)
T PRK09109 221 LVEGLVAIAEGENPRSIELKLQGYLH 246 (246)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf 99999998689985999999987639
No 9
>PRK08990 flagellar motor protein PomA; Reviewed
Probab=100.00 E-value=0 Score=506.82 Aligned_cols=246 Identities=20% Similarity=0.318 Sum_probs=232.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 96899999999999999997099811242489999999999999998589899999999999963578899666899999
Q gi|255764488|r 1 MSTIIGLFITILCIIGGFYAMGGNPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLK 80 (290)
Q Consensus 1 l~tIiGlv~~~~~I~~g~~~~GG~l~~f~~~~sllIV~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~eli~ 80 (290)
++||+|+++++++++++++ .||+++.|||++|++||+|||++|++++||+++++++++.+.++|++++.+ +.++++
T Consensus 3 ~~tiiGli~~~~~i~~~~~-~gg~~~~f~~~~s~lIV~GGt~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~li~ 78 (253)
T PRK08990 3 LATLIGLIGAFAFVIMAMV-LGGGIGMFVDVPSILIVFGGSLFVVLMKFNLGQFFGAGKIAGKAFMFKIDK---PEDLIE 78 (253)
T ss_pred HHHHHHHHHHHHHHHHHHH-HCCCHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC---HHHHHH
T ss_conf 6899999999999999999-578679897513588779989999998487999999988999996167778---999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999974104744764207421145553235530620279999999999963789899999999999999999621
Q gi|255764488|r 81 LLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLK 160 (290)
Q Consensus 81 ~l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~ 160 (290)
++++|++++||+|++++|+. + ..++|+|+|+++++||+ +++++|++|++|++.+++||+.
T Consensus 79 ~l~~la~~aRk~GllaLE~~--~-----------------i~~~Fl~~gl~l~vDG~-~~e~i~~~L~~ei~~~~~r~~~ 138 (253)
T PRK08990 79 QSVEMADAARKGGFLALEEA--E-----------------ISNSFMQKGVDMLVDGH-DGDVVRAALEKDIALTEERHET 138 (253)
T ss_pred HHHHHHHHHHHCCHHHHHCC--C-----------------CCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999985672432025--6-----------------89889999999997699-9999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 28999999999888889999999999996148978999866689999999999999999999999999999999999999
Q gi|255764488|r 161 PYHAISHMGESLPAIGIVGAILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYII 240 (290)
Q Consensus 161 ~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~ 240 (290)
++++|++||+|||||||+|||+|||+||+|++| |++|||+||+||+|||||+++||+||+|+|+|++.++++|...++|
T Consensus 139 ~~~v~~~~g~~aPafGmiGTviGLI~mL~~l~d-p~~iG~~mA~ALvtTlYGillAnl~~~PiA~KL~~~~~~e~~~~~~ 217 (253)
T PRK08990 139 GIGIFRAFGDVAPAMGMIGTLIGLVAMLSNMDD-PKSIGPAMAVALLTTLYGAVLANMVAIPIADKLSLRMGEEMLNRNL 217 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 678999999871688799999999999980699-9999988899999999999999999999999999899999999899
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCHHHCC
Q ss_conf 9999999957999689999983119967683
Q gi|255764488|r 241 VKKALIAYMNGAIPQVAIEYGRKVLPLSERP 271 (290)
Q Consensus 241 i~egi~~i~~g~~P~~~~e~l~~~lp~~~r~ 271 (290)
|+||+++|++|+|||+++|+|++||||++|.
T Consensus 218 i~eGil~I~~g~nP~~i~~kL~syL~~~~r~ 248 (253)
T PRK08990 218 IMDAVLAIQDGQNPRVIEGFLKNYLAEKKRK 248 (253)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCCHHHCC
T ss_conf 9999999877998799999999729914015
No 10
>pfam01618 MotA_ExbB MotA/TolQ/ExbB proton channel family. This family groups together integral membrane proteins that appear to be involved translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flageller motor that uses a proton gradient to generate rotational motion in the flageller. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.
Probab=99.70 E-value=1.4e-15 Score=118.06 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCHHHH
Q ss_conf 7999999999996378989999999999999999962128999999999888889999999999996148----978999
Q gi|255764488|r 123 TTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLKPYHAISHMGESLPAIGIVGAILGIIKAMGNLS----QSPKIL 198 (290)
Q Consensus 123 ~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~----d~p~~l 198 (290)
.+|.+...+...+....++.+|..||..+.....+.++...++.+++..||.+|++|||+|+|..+++++ .+|+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~e~i~~ame~~~~~e~~~le~~l~~L~ti~~~AP~lGLlGTV~Gmi~~F~~i~~~g~~~~~~~ 95 (139)
T pfam01618 16 LSFVRLGLAPLIERGAFKEFLRLALEEALDAELRKLERGLTILATIGSVAPFLGLLGTVWGIIHAFIHIGQTGQADPAVV 95 (139)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 89999870102354214899999999999999999984869999999894798999999999999998873567768888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86668999999999999999999999999999999999999999
Q gi|255764488|r 199 GTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYIIVK 242 (290)
Q Consensus 199 G~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~i~ 242 (290)
+++|+.||+||.+|++.| .......+.+..+.++-...++...
T Consensus 96 a~GI~~ALitTa~GL~vA-Ipa~i~yn~l~~r~~~~~~~~E~f~ 138 (139)
T pfam01618 96 APGISEALVATALGLFVA-IPALLAYNVLKRKVEQLSLKIEAFA 138 (139)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 769999999999999999-9999999999999999999998760
No 11
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=99.61 E-value=1.8e-12 Score=98.48 Aligned_cols=114 Identities=12% Similarity=0.160 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---C-CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 989999999999999999962128999999999888889999999999996148---9-789998666899999999999
Q gi|255764488|r 139 RSYEIENLMDEEIDIILYEKLKPYHAISHMGESLPAIGIVGAILGIIKAMGNLS---Q-SPKILGTAIGVSLTGTLLGII 214 (290)
Q Consensus 139 ~~~~i~~~L~~ei~~~~~~~~~~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~---d-~p~~lG~~iA~ALitTlYGv~ 214 (290)
..+.++..|+..++....+.++.-..+.+.+..||-.|++|||+|++..+.+++ + |++.+.|||+.||+||--|.+
T Consensus 96 ~~e~~~~al~~~~~~~~~~l~~~L~~LatI~s~aP~lGL~GTV~GIm~aF~~i~~~~~~~~a~vA~GIseAL~aTA~GL~ 175 (216)
T COG0811 96 LKERARRALEEAIAREERRLERGLTLLATIGSIAPFLGLLGTVWGIMPAFIGIGAGGGADLAVVAPGISEALIATAIGLF 175 (216)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 58999999999999999998867759999998311888999999999999998567899999998789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999999999999999999999999957999
Q gi|255764488|r 215 LSYSLCNPLTSQIKSTRLKQHRLYIIVKKALIAYMNGAI 253 (290)
Q Consensus 215 lAn~i~~Pia~kl~~~~~~e~~~~~~i~egi~~i~~g~~ 253 (290)
.| .....+.+.++.+.++.....+-..+.+..+.++..
T Consensus 176 vA-IPAvi~yn~l~r~~~~~~~~~e~~~~~l~~~~~~~~ 213 (216)
T COG0811 176 VA-IPAVVAYNVLRRKVEELLAKLEDFAEELELILRRQY 213 (216)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99-999999999999999999999999999999982210
No 12
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=99.37 E-value=1.9e-09 Score=79.23 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999962128999999999888889999999999996148----978999866689999999999999
Q gi|255764488|r 141 YEIENLMDEEIDIILYEKLKPYHAISHMGESLPAIGIVGAILGIIKAMGNLS----QSPKILGTAIGVSLTGTLLGIILS 216 (290)
Q Consensus 141 ~~i~~~L~~ei~~~~~~~~~~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~----d~p~~lG~~iA~ALitTlYGv~lA 216 (290)
+.++..|+..++....+.++.-.++.+.|..||-.|++|||.|+++.+.+++ .+++.+.|||+.||+||-.|.+.|
T Consensus 103 e~~~ral~~~~~~e~~~le~~L~~LaTi~s~APfiGLlGTV~Gii~aF~~i~~~g~~~~~~vA~GI~EALiaTA~GL~VA 182 (227)
T PRK10801 103 EGASRAMRISMNRELENLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVKQATLQMVAPGIAEALIATAIGLFAA 182 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999985860767612422699999999999999999863567757877779999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 9999999999999999999999999999999957999689
Q gi|255764488|r 217 YSLCNPLTSQIKSTRLKQHRLYIIVKKALIAYMNGAIPQV 256 (290)
Q Consensus 217 n~i~~Pia~kl~~~~~~e~~~~~~i~egi~~i~~g~~P~~ 256 (290)
....=..+.+..+.+.-...++...+-++.+.+++.+..
T Consensus 183 -IPAvi~YN~~~~~i~~~~~~me~fa~el~~~l~rq~~~~ 221 (227)
T PRK10801 183 -IPAVMAYNRLNQRVNKLELNYDNFMEEFTAILHRQAFTV 221 (227)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf -999999999999999999999999999999999877501
No 13
>PRK10414 biopolymer transport protein ExbB; Provisional
Probab=99.15 E-value=3.7e-08 Score=71.03 Aligned_cols=106 Identities=13% Similarity=0.252 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 99999999999999962128999999999888889999999999996148----978999866689999999999999--
Q gi|255764488|r 143 IENLMDEEIDIILYEKLKPYHAISHMGESLPAIGIVGAILGIIKAMGNLS----QSPKILGTAIGVSLTGTLLGIILS-- 216 (290)
Q Consensus 143 i~~~L~~ei~~~~~~~~~~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~----d~p~~lG~~iA~ALitTlYGv~lA-- 216 (290)
++..|+.+++...++.++.-.++.+.|..||-.|++|||.|+++.+.+++ -+.+++.||||-||+||-.|.+.|
T Consensus 106 ~~~~l~r~i~~~~~~le~~L~fLATigS~APFIGLfGTVWGIM~aF~~Ia~~g~asla~VApGIaEALiaTA~GL~vAIP 185 (239)
T PRK10414 106 TSFRLERRVAAVGRQMGRGNGYLATIGAISPFVGLFGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALLATAIGLVAAIP 185 (239)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998051699999722348999999999999999998657997898778899999999999999999
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf -999999999999999999999999999999995799
Q gi|255764488|r 217 -YSLCNPLTSQIKSTRLKQHRLYIIVKKALIAYMNGA 252 (290)
Q Consensus 217 -n~i~~Pia~kl~~~~~~e~~~~~~i~egi~~i~~g~ 252 (290)
.+.+.=+.+|++. -...++--.+-++.+...+
T Consensus 186 Av~~YN~f~~~~~~----~~~~~~~Fa~e~~~~~~r~ 218 (239)
T PRK10414 186 AVVIYNVFARQIGG----YKAMLGDVAAQVLLLQSRD 218 (239)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999----9999999999999998753
No 14
>TIGR02796 tolQ protein TolQ; InterPro: IPR014163 TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses proton motive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this entry describes TolQ specifically, as found in tol-pal operons. A close homologue, excluded from this entry, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species..
Probab=98.85 E-value=4e-08 Score=70.83 Aligned_cols=108 Identities=15% Similarity=0.251 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999621289999999998888899999999999961489-----78999866689999999999999
Q gi|255764488|r 142 EIENLMDEEIDIILYEKLKPYHAISHMGESLPAIGIVGAILGIIKAMGNLSQ-----SPKILGTAIGVSLTGTLLGIILS 216 (290)
Q Consensus 142 ~i~~~L~~ei~~~~~~~~~~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~d-----~p~~lG~~iA~ALitTlYGv~lA 216 (290)
-++..|+..++...++.++...++.|.|..+|=.|+.|||.|+.+.+.+++. +-+...||||-||++|=-|.+.|
T Consensus 106 ~~~Ram~~~~~rE~~~Le~~L~fLATvGS~sPfIGLFGTVWGIM~sF~~ig~~~~qatLA~VAPGIAEALiATAiGLfAA 185 (219)
T TIGR02796 106 RIDRAMRVALNRELEKLESGLPFLATVGSTSPFIGLFGTVWGIMHSFQAIGGSKNQATLAVVAPGIAEALIATAIGLFAA 185 (219)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999988614650322432226524433305478899998767643455541524789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999999999999999999957
Q gi|255764488|r 217 YSLCNPLTSQIKSTRLKQHRLYIIVKKALIAYMN 250 (290)
Q Consensus 217 n~i~~Pia~kl~~~~~~e~~~~~~i~egi~~i~~ 250 (290)
.=..=-.+|+-...++-...++--.|=.+.|.+
T Consensus 186 -IPAViAYN~f~~~~~~i~~~~e~F~~EF~~iL~ 218 (219)
T TIGR02796 186 -IPAVIAYNKFSTQVNKIEQRYENFADEFSSILQ 218 (219)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf -899999999999999999998889999997502
No 15
>TIGR02797 exbB tonB-system energizer ExbB; InterPro: IPR014164 This entry describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterised are involved in siderophore transport across the outer membrane..
Probab=97.98 E-value=1.6e-05 Score=54.30 Aligned_cols=91 Identities=15% Similarity=0.326 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHH
Q ss_conf 789899999999999999999621289999999998888899999999999961489----7899986668999999999
Q gi|255764488|r 137 NARSYEIENLMDEEIDIILYEKLKPYHAISHMGESLPAIGIVGAILGIIKAMGNLSQ----SPKILGTAIGVSLTGTLLG 212 (290)
Q Consensus 137 ~~~~~~i~~~L~~ei~~~~~~~~~~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~d----~p~~lG~~iA~ALitTlYG 212 (290)
+.++ .+-.-|+.-....-.|...+..++.++|..+|-.|+.|||-|+-.-+-++++ +-+...||||-||++|=.|
T Consensus 97 G~kE-Rv~~~L~r~e~~~gR~~~~GtG~LATIGa~aPFVGLFGTVWGIMnsFigIs~~qTTnLAVVAPGIAEALLATA~G 175 (213)
T TIGR02797 97 GIKE-RVASRLERIEAAAGRRMSRGTGVLATIGATAPFVGLFGTVWGIMNSFIGISKAQTTNLAVVAPGIAEALLATALG 175 (213)
T ss_pred CCHH-HHHHHHHHHHHHHCCHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHH
T ss_conf 6146-889999999998330000368720312001253222102775887888766652204000352378999999988
Q ss_pred HHHH---HHHHHHHHHHHH
Q ss_conf 9999---999999999999
Q gi|255764488|r 213 IILS---YSLCNPLTSQIK 228 (290)
Q Consensus 213 v~lA---n~i~~Pia~kl~ 228 (290)
..-| =+|++-+|-.+.
T Consensus 176 LVAAIPAVvIYN~faR~i~ 194 (213)
T TIGR02797 176 LVAAIPAVVIYNVFARSIA 194 (213)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9988548988865875699
No 16
>TIGR02805 exbB2 tonB-system energizer ExbB; InterPro: IPR014172 Members of this protein family appear to be the ExbB protein of an ExbBD proton-transporting membrane complex that, by means of TonB, energizes transport by TonB-dependent receptors. Note that this family represents one of at least two distinct groups TolQ homologues designated ExbB - see also IPR014164 from INTERPRO. Each group associates with a distinct group of ExbD proteins, and a single species may have two ExbB/ExbD/TonB systems..
Probab=97.63 E-value=0.00012 Score=48.69 Aligned_cols=78 Identities=19% Similarity=0.432 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---C--CHHHHH
Q ss_conf 99999999996378989999999999999999962128999999999888889999999999996148---9--789998
Q gi|255764488|r 125 FICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLKPYHAISHMGESLPAIGIVGAILGIIKAMGNLS---Q--SPKILG 199 (290)
Q Consensus 125 fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~---d--~p~~lG 199 (290)
|+|+ .-++.|.+-+++++-+. +---++..++.-||=.|++|||+|...++=+|+ + ||+++=
T Consensus 32 f~rk---i~v~~Y~~~~qld~dl~-----------~NlT~isiIgsNAPYiGLLGTVIGImvTFY~~G~gggdID~~~i~ 97 (139)
T TIGR02805 32 FYRK---IKVKRYEDVEQLDDDLS-----------RNLTVISIIGSNAPYIGLLGTVIGIMVTFYEMGLGGGDIDVKAIL 97 (139)
T ss_pred HHHC---CCHHCCCCHHHHHHHHH-----------CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 8740---22102146678999885-----------320411225002550125578999999888632566764511545
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 66689999999999999
Q gi|255764488|r 200 TAIGVSLTGTLLGIILS 216 (290)
Q Consensus 200 ~~iA~ALitTlYGv~lA 216 (290)
-+.+.||=+|-.|++.|
T Consensus 98 ~gLSLALKATALGlLVA 114 (139)
T TIGR02805 98 VGLSLALKATALGLLVA 114 (139)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 56128999999779999
No 17
>PRK03982 heat shock protein HtpX; Provisional
Probab=94.68 E-value=0.33 Score=26.87 Aligned_cols=218 Identities=13% Similarity=0.106 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999999999970998112424899999999999999985898999999999999635788996668999999999
Q gi|255764488|r 5 IGLFITILCIIGGFYAMGGNPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLKLLYI 84 (290)
Q Consensus 5 iGlv~~~~~I~~g~~~~GG~l~~f~~~~sllIV~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~eli~~l~e 84 (290)
++++.++ .+..|+.+ ||+.+.+| ++++.+++.+.+... ..+.+.+....++.++++..++.+.+.+
T Consensus 11 ~~~~~~l-~~~~g~~~-gg~~g~~~---~~~~~~~~~~~~~~~---------s~~i~l~~~~a~~v~~~e~p~L~~~v~~ 76 (288)
T PRK03982 11 MALLTGL-LYGIGYLL-GGSPGMII---AIILALITNLISYYY---------SDKIVLASYGAQIVSESEAPELYRIVER 76 (288)
T ss_pred HHHHHHH-HHHHHHHH-HCHHHHHH---HHHHHHHHHHHHHHH---------HHHHHHHHCCCEECCCCCCHHHHHHHHH
T ss_conf 9999999-99999999-47699999---999999999999997---------3999999829887881216899999999
Q ss_pred HHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999997410474476-4207421145553235530620279999999999963789899999999999999999621289
Q gi|255764488|r 85 LMYNLKKGSRNETEN-HIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLKPYH 163 (290)
Q Consensus 85 l~~~~Rk~GllaLE~-~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~~~~ 163 (290)
++.+ -|+-.-+- -+|++.-+..+... ......=.+.+|+ .+ .-+++|++.++-.|+-...+++..-..
T Consensus 77 la~~---aglp~P~v~i~~~~~pNAFa~G~----~~~~~~V~vt~GL---L~-~L~~dEl~aVlAHElgHi~n~D~~~~~ 145 (288)
T PRK03982 77 LANR---ANIPKPKVAIVPTQTPNAFATGR----DPKHAVVAVTEGI---LN-LLNEDELEGVIAHELTHIKNRDTLIQT 145 (288)
T ss_pred HHHH---CCCCCCEEEEEECCCCCEEEECC----CCCCEEEEEEHHH---HH-HCCHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 9997---69897948997089976687268----9998589964899---87-389999999999999999723399999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q ss_conf 9999999988888999999999999614897899986668999999999999999999999999999999999----999
Q gi|255764488|r 164 AISHMGESLPAIGIVGAILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHR----LYI 239 (290)
Q Consensus 164 ~~~~~a~~aPafGmiGTviGLI~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~----~~~ 239 (290)
+...+ +-++..++..+......+.-.++... +......++.-++..+.++++-.-++.+-+..+|.--- .-+
T Consensus 146 i~~~l---~~~i~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~ll~~i~~~l~~~ll~~a~SR~REy~AD~~Aa~ltg~p~ 221 (288)
T PRK03982 146 IAATL---AGAIMYLANFASWGLWFGGGRDDDRN-GGNPIGSLLFIILAPIAATIIQLAISRTREFLADEGGARLSGNPI 221 (288)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 99999---99999999999999997236666554-403999999999999999999998406679998599999839989
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999999579
Q gi|255764488|r 240 IVKKALIAYMNG 251 (290)
Q Consensus 240 ~i~egi~~i~~g 251 (290)
....++.-+.++
T Consensus 222 ~LasAL~KL~~~ 233 (288)
T PRK03982 222 ALANALTKLEKG 233 (288)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999841
No 18
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=94.28 E-value=0.41 Score=26.30 Aligned_cols=190 Identities=14% Similarity=0.012 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999741047447642074211455532355306202799999999999637898999999999999999
Q gi|255764488|r 76 CDVLKLLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIIL 155 (290)
Q Consensus 76 ~eli~~l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~ 155 (290)
.+.+..+.+.+++--.-.+.+-.++++||+-. +..++..|....+.+++-++.- ++. ++.+.+.-.
T Consensus 83 i~~l~~la~~aRk~GllaLE~~~~~~~dpFl~----~gl~l~vdg~~~~~i~~iLe~e---------i~~-~~~r~~~~~ 148 (272)
T PRK06926 83 VQTFVSLSEQARREGLLSLDAQLDEVKDPFLK----KGLLLAIDGWDEETIRDVMDSE---------IAA-MEERHRKGR 148 (272)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHH----HHHHHHHCCCCHHHHHHHHHHH---------HHH-HHHHHHHHH
T ss_conf 99999999999875676588765065787999----8899985899999999999999---------999-999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99621289999999998888899999999999961489789998666899999999999999999999999999999999
Q gi|255764488|r 156 YEKLKPYHAISHMGESLPAIGIVGAILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQH 235 (290)
Q Consensus 156 ~~~~~~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~ 235 (290)
+-.+.....-=++|=..--+|+|.++-.|=. -+.++ ..++.+.=+-|.+.+..=++..=+..=+..+-+.......
T Consensus 149 ~~~~~~g~~aPafGmiGTviGLI~mL~~l~d-p~~iG---~~mAvALvtTlYGv~lAn~~f~PiA~KL~~~~~~e~~~~~ 224 (272)
T PRK06926 149 RLFEKAGEFAPAWGMIGTLVGLVLMLKNLND-PHTLG---PNMAVALLTTLYGTLLANLVFIPIAAKLEEKTESEIFIKQ 224 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999872588799999999999881699-99998---8889999999999999999998899999988899999989
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCCHHHHHHHHHHC
Q ss_conf 999999999999957999689999983119967683889999999702
Q gi|255764488|r 236 RLYIIVKKALIAYMNGAIPQVAIEYGRKVLPLSERPSIEIVAQEVLQY 283 (290)
Q Consensus 236 ~~~~~i~egi~~i~~g~~P~~~~e~l~~~lp~~~r~~~~e~~~~~~~~ 283 (290)
...+-++.-.-.-.-..--..+.-.|+.---.++|++..|.++++.++
T Consensus 225 miieGil~I~~g~nP~~ie~kL~sfL~p~~r~~~~~~~~~~~~~~~~~ 272 (272)
T PRK06926 225 VMIEGIIGVQSGQNPRNLESQLVVFSSKEDWQKKRADRSKKKDRVHEA 272 (272)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHCCC
T ss_conf 999999998779984999999997499888866500056776553039
No 19
>PRK03001 heat shock protein HtpX; Provisional
Probab=88.93 E-value=1.7 Score=22.40 Aligned_cols=122 Identities=13% Similarity=0.181 Sum_probs=56.9
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999709981124248999999999999999858989999999999996357889966689999999999999974104
Q gi|255764488|r 15 IGGFYAMGGNPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLKLLYILMYNLKKGSR 94 (290)
Q Consensus 15 ~~g~~~~GG~l~~f~~~~sllIV~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~eli~~l~el~~~~Rk~Gl 94 (290)
+.|+.+ ||..+.+| ++++.+|+.+.+.+. ..+.+.+.+..++.++++..++.+.+.+++.+ -|+
T Consensus 19 ~~g~~~-gg~~g~~~---~~~~~~~~~~~~~~~---------s~~~~l~~~~a~~v~~~~~p~L~~~V~~la~~---agi 82 (284)
T PRK03001 19 VIGGMI-GGSRGMLI---ALLFALGMNFFSYWF---------SDKMVLKMYNAQEVDENTAPQFYRMVRELAQR---ANL 82 (284)
T ss_pred HHHHHH-HCHHHHHH---HHHHHHHHHHHHHHH---------HHHHHHHHCCCEECCCCCCHHHHHHHHHHHHH---CCC
T ss_conf 999998-56779999---999999999999995---------49999998297778854468999999999997---698
Q ss_pred HHHHHH-HCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 744764-207421145553235530620279999999999963789899999999999999999621
Q gi|255764488|r 95 NETENH-IDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLK 160 (290)
Q Consensus 95 laLE~~-ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~ 160 (290)
-.-+-. ++++.-. .|.--. ..++..=-+.+|+ .+ .-+++|++..+-.|+....+++..
T Consensus 83 p~P~v~i~~~~~pN-AFAtG~---~~~~a~I~vT~GL---L~-~L~~dELeaVlAHEl~Hi~n~D~~ 141 (284)
T PRK03001 83 PMPKVYLINEDQPN-AFATGR---NPEHAAVAATTGI---LR-VLSEREIRGVMAHELAHVKHRDIL 141 (284)
T ss_pred CCCEEEEEECCCCC-EEEECC---CCCCEEEEEEHHH---HH-HCCHHHHHHHHHHHHHHHHCCCHH
T ss_conf 97958998558865-446536---8888389960899---97-579999999999999999746889
No 20
>PRK04897 heat shock protein HtpX; Provisional
Probab=88.36 E-value=1.8 Score=22.16 Aligned_cols=93 Identities=12% Similarity=0.140 Sum_probs=44.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf 99999996357889966689999999999999974104744764-20742114555323553062027999999999996
Q gi|255764488|r 57 SGVSLLEIFGYKALGQDTYCDVLKLLYILMYNLKKGSRNETENH-IDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIV 135 (290)
Q Consensus 57 ~~~~l~~~f~~~~~~~~~~~eli~~l~el~~~~Rk~GllaLE~~-ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~ 135 (290)
..+.+......+..++++..++.+.+.+++.+ -|+---+-. ++++.-+..+... ..++..=.+.+|+ ++
T Consensus 61 s~~~vl~~~~a~~v~~~~~p~L~~~Ve~la~~---aglp~P~vyi~~~~~pNAFatG~----~~~~~~V~vt~GL---L~ 130 (298)
T PRK04897 61 STNVVMSMNHAREVTEEEAPELWHIVEDMAMV---AQIPMPRVFIIDDPSPNAFATGS----DPKNAAVAVTTGL---LE 130 (298)
T ss_pred HHHHHHHHCCCEECCCCCCHHHHHHHHHHHHH---CCCCCCEEEEECCCCCCEEEEEC----CCCCEEEEECHHH---HH
T ss_conf 09999998398678800157999999999997---69899907996289870699506----8888789961798---97
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3789899999999999999999621
Q gi|255764488|r 136 GNARSYEIENLMDEEIDIILYEKLK 160 (290)
Q Consensus 136 g~~~~~~i~~~L~~ei~~~~~~~~~ 160 (290)
.-+.+|++..+-.|+-...+++..
T Consensus 131 -~L~~~ELeaVlAHElgHikn~Di~ 154 (298)
T PRK04897 131 -VMNREELEGVIGHEISHIRNYDIR 154 (298)
T ss_pred -HCCHHHHHHHHHHHHHHHHCCCHH
T ss_conf -689999999999999999757799
No 21
>TIGR02865 spore_II_E stage II sporulation protein E; InterPro: IPR014221 This entry contains the stage II sporulation protein E (SpoIIE), which is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation and it has phosphatase activity, located in the C-terminal region, which is required to activate sigma-F. All members of this entry are found in endospore-forming Gram-positive bacteria. A homologous protein, not a member of this entry, is found in the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis..
Probab=83.92 E-value=3.1 Score=20.72 Aligned_cols=141 Identities=18% Similarity=0.269 Sum_probs=74.5
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 532355306202799999999999637898999999999999999996212899999999988888-9999999999996
Q gi|255764488|r 111 TSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLKPYHAISHMGESLPAIG-IVGAILGIIKAMG 189 (290)
Q Consensus 111 ~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~~~~~~~~~a~~aPafG-miGTviGLI~ml~ 189 (290)
.+++....+.|..++.- -+-.++.|...-. +-.- -+++..-.+ -.+=.+...|+ |+.| =+|+|+|+|..|+
T Consensus 146 ~~~k~~~~~EEivs~~I-l~asvl~G~~gl~-i~gR--~s~~~i~a~--~~VL~~sy~gG--s~~G~A~Gvv~G~i~~l~ 217 (794)
T TIGR02865 146 GRTKHLLSNEEIVSLII-LIASVLTGLRGLS-IWGR--LSLENIIAR--LAVLLISYIGG--SGAGAAIGVVIGVILGLA 217 (794)
T ss_pred CCCCCCCCCCCHHHHHH-HHHHHHHHCCCCC-CCCH--HHHHHHHHH--HHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_conf 98775566430689999-9999998405774-0141--218889999--99999985423--214789999999999864
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------
Q ss_conf 14897899986668999999999-------9999999999999999999999999999999999995799----------
Q gi|255764488|r 190 NLSQSPKILGTAIGVSLTGTLLG-------IILSYSLCNPLTSQIKSTRLKQHRLYIIVKKALIAYMNGA---------- 252 (290)
Q Consensus 190 ~l~d~p~~lG~~iA~ALitTlYG-------v~lAn~i~~Pia~kl~~~~~~e~~~~~~i~egi~~i~~g~---------- 252 (290)
|.+ .|..+| +|| -.+||+|++=+++=.|...+-=...=-++-..++++..+-
T Consensus 218 ~~~-~~~~~g----------~~gPPtLsDsqamaYvf~GLLgG~Fk~~~K~gt~~gylvg~~i~~~Y~~~~~~~~~~lA~ 286 (794)
T TIGR02865 218 NNA-NLIQIG----------VFGPPTLSDSQAMAYVFAGLLGGIFKELGKIGTAIGYLVGFLILAFYTQGSVAFSLALAY 286 (794)
T ss_pred HCC-CCCCCC----------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 112-201331----------134865203679999999999989875217999999999999999980651334444689
Q ss_pred -----------CHHHHHHHHHHCCCHHHC
Q ss_conf -----------968999998311996768
Q gi|255764488|r 253 -----------IPQVAIEYGRKVLPLSER 270 (290)
Q Consensus 253 -----------~P~~~~e~l~~~lp~~~r 270 (290)
-|.-...++..+|+.+.+
T Consensus 287 e~l~A~~lF~l~P~~~~~~~~~~l~~~~~ 315 (794)
T TIGR02865 287 EVLIAALLFLLIPNKIYKKLERELDGEKK 315 (794)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999998689999998975786325
No 22
>PRK03072 heat shock protein HtpX; Provisional
Probab=81.90 E-value=3.7 Score=20.23 Aligned_cols=94 Identities=6% Similarity=0.008 Sum_probs=45.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf 99999996357889966689999999999999974104744764-20742114555323553062027999999999996
Q gi|255764488|r 57 SGVSLLEIFGYKALGQDTYCDVLKLLYILMYNLKKGSRNETENH-IDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIV 135 (290)
Q Consensus 57 ~~~~l~~~f~~~~~~~~~~~eli~~l~el~~~~Rk~GllaLE~~-ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~ 135 (290)
.-+...+....+..+++++.++.+.+.+++..+. +---+-. +|++.- .-|.--. ..++..=-+.+|+ ++
T Consensus 51 s~~~~l~~~~a~~i~~~e~p~L~~~V~~la~~ag---ip~P~v~i~~~~~p-NAFAtG~---~~~~a~V~vT~GL---L~ 120 (289)
T PRK03072 51 SDKLALRAMHAQPVSELQAPAMYRIVRELSTAAH---QPMPRLYISPTMAP-NAFATGR---NPRNAAVCCTEGI---LQ 120 (289)
T ss_pred HHHHHHHHHCCEECCHHHCHHHHHHHHHHHHHCC---CCCCEEEEECCCCC-CEEEECC---CCCCEEEEEEHHH---HH
T ss_conf 5999999809888981036799999999999769---89991799549997-5588427---9888699964799---75
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 37898999999999999999996212
Q gi|255764488|r 136 GNARSYEIENLMDEEIDIILYEKLKP 161 (290)
Q Consensus 136 g~~~~~~i~~~L~~ei~~~~~~~~~~ 161 (290)
.-+++|++..+-.|+....+++..-
T Consensus 121 -~L~~dELeaVlAHEl~Hi~n~D~~~ 145 (289)
T PRK03072 121 -ILNERELRGVLGHELSHVYNRDILI 145 (289)
T ss_pred -HCCHHHHHHHHHHHHHHHHCCCHHH
T ss_conf -1899999999999999998358999
No 23
>TIGR01060 eno phosphopyruvate hydratase; InterPro: IPR000941 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate , . In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer . The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex.
Probab=76.71 E-value=1.5 Score=22.68 Aligned_cols=78 Identities=14% Similarity=0.224 Sum_probs=50.0
Q ss_pred HHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-
Q ss_conf 3062027999999999996378989999999999999999962128999999999888889999999999996148978-
Q gi|255764488|r 117 LENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLKPYHAISHMGESLPAIGIVGAILGIIKAMGNLSQSP- 195 (290)
Q Consensus 117 ~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~d~p- 195 (290)
++|.+...|+-+|+...|+ .|.+++..++.=+....+..++ +.|-.||+.|
T Consensus 48 LRD~Dk~RY~GKGVl~Av~------nVn~~I~~~L~G~~A~~Q~~iD----------------------~~l~~lDGTpN 99 (430)
T TIGR01060 48 LRDGDKKRYLGKGVLKAVE------NVNEIIAPALIGLDATDQREID----------------------QILIELDGTPN 99 (430)
T ss_pred EECCCCCCCCCCCHHHHHH------HHHHHHHHHHCCCCCCCHHHHH----------------------HHHHHCCCCCC
T ss_conf 6455787548843899999------9999878660578801379999----------------------99996458888
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -------9998666899999999999999999999999999
Q gi|255764488|r 196 -------KILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKS 229 (290)
Q Consensus 196 -------~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~ 229 (290)
+.||.+||+|= .-|+..=.|+...|-.
T Consensus 100 Ks~LGANAILgVSlA~Ak-------AAA~~~~~PLY~YLGG 133 (430)
T TIGR01060 100 KSKLGANAILGVSLAVAK-------AAAKSLGLPLYRYLGG 133 (430)
T ss_pred HHHCCCHHHHHHHHHHHH-------HHHHHCCCCHHHHHHH
T ss_conf 534152177899999999-------9999717871446541
No 24
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family; InterPro: IPR010020 This entry identifies a clade of sequences from gamma and beta proteobacteria. These proteins are more than 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from Escherichia coli has been annotated as yccS. The YccS hypothetical equivalog is found in beta and gamma proteobacteria, while the smaller YhfK group is only found in E. coli, Salmonella and Yersinia. .
Probab=71.54 E-value=5.2 Score=19.32 Aligned_cols=56 Identities=9% Similarity=-0.063 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHHCCCHHH
Q ss_conf 99999999999999999999999999999-99999999579996899999831199676
Q gi|255764488|r 212 GIILSYSLCNPLTSQIKSTRLKQHRLYII-VKKALIAYMNGAIPQVAIEYGRKVLPLSE 269 (290)
Q Consensus 212 Gv~lAn~i~~Pia~kl~~~~~~e~~~~~~-i~egi~~i~~g~~P~~~~e~l~~~lp~~~ 269 (290)
|.+++|+=- +--|+...+.++....+. .-+.-++=.+-.+=.-+-++|++++.++.
T Consensus 332 ~~Ll~NL~~--id~~L~~~~~~~~~~~~~n~~~~~L~d~~~~gL~~~~~~L~~~lt~~S 388 (724)
T TIGR01667 332 GYLLDNLRS--IDWQLARIARELAVAKPLNYAEDELADKQPRGLKDILARLKSHLTPES 388 (724)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC
T ss_conf 999999999--999998741166665363013886630063235789999986138345
No 25
>pfam09779 DUF2349 Uncharacterized conserved protein (DUF2349). Members of this family of uncharacterized novel proteins have no known function.
Probab=67.63 E-value=3.9 Score=20.09 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=29.8
Q ss_pred HCCCCHHHHHHHHHHCCCHHHCCCHHHHHHHHHHCCCC
Q ss_conf 57999689999983119967683889999999702434
Q gi|255764488|r 249 MNGAIPQVAIEYGRKVLPLSERPSIEIVAQEVLQYNHN 286 (290)
Q Consensus 249 ~~g~~P~~~~e~l~~~lp~~~r~~~~e~~~~~~~~~~~ 286 (290)
.=..|-++..+.|.+|+|+.+-|.++..+++.+.+++.
T Consensus 76 ~C~~NQ~l~~~~LA~y~P~~edP~y~~ye~e~~~Yr~~ 113 (129)
T pfam09779 76 RCLRNQHLKTNVLASYLPDPEDPNYQRYEEEIPVYRKS 113 (129)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 88873999999999708997773088999899999999
No 26
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=67.08 E-value=8.9 Score=17.81 Aligned_cols=179 Identities=17% Similarity=0.268 Sum_probs=109.3
Q ss_pred CHHHHHHHHH--HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------
Q ss_conf 9899999999--99996357889966689999999999999974104744764207421145553235530---------
Q gi|255764488|r 50 PLKVIKDSGV--SLLEIFGYKALGQDTYCDVLKLLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLE--------- 118 (290)
Q Consensus 50 p~~~i~~~~~--~l~~~f~~~~~~~~~~~eli~~l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~--------- 118 (290)
.+.-++.++. ++-..|+-... ++.=..+=+..|++-.|.=|+.+-|...-.=+-.+.|...|++++
T Consensus 221 s~eR~~AAy~ATaIAEYFRDQGk---~VlLmmDSlTRfARA~REiGLAaGEP~aR~GyPPSVF~~LPRLLERaG~~e~GS 297 (430)
T TIGR02546 221 SLERLKAAYTATAIAEYFRDQGK---RVLLMMDSLTRFARALREIGLAAGEPPARRGYPPSVFSSLPRLLERAGNSEKGS 297 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC---EEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCHHHCCCCCCCCCC
T ss_conf 79999998788799999997399---079884027799999877887537840025778736650750122786112962
Q ss_pred -----------CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----------620279999999999963789899999999999999999621289999999998888899999999999
Q gi|255764488|r 119 -----------NNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLKPYHAISHMGESLPAIGIVGAILGIIKA 187 (290)
Q Consensus 119 -----------~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~~~~~~~~~a~~aPafGmiGTviGLI~m 187 (290)
|.+.|| +.|-+|-+.||. | +|..++. ++.|.-+++|+.+..- +
T Consensus 298 ITA~YTVLvEgDd~~dP-~ADEvRSILDGH-----I--vLsR~LA--~~~HyPAIDVLaS~SR----------------v 351 (430)
T TIGR02546 298 ITALYTVLVEGDDMNDP-IADEVRSILDGH-----I--VLSRKLA--ERNHYPAIDVLASLSR----------------V 351 (430)
T ss_pred EEEEEEEEECCCCCCCC-HHHHHHHHHHHH-----H--HHHHHHH--HCCCCCHHHHHHHHHH----------------H
T ss_conf 53456787627779984-366554454236-----8--9989997--4168863566523664----------------2
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH-----HHHHHH
Q ss_conf 961489789998666899999999999999999999999999999999999999999999957999689-----999983
Q gi|255764488|r 188 MGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYIIVKKALIAYMNGAIPQV-----AIEYGR 262 (290)
Q Consensus 188 l~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~i~egi~~i~~g~~P~~-----~~e~l~ 262 (290)
|+++.+ .+-- . .|+|++..-..=....-+|.=| .||.|.+|.. ..+.++
T Consensus 352 m~~vv~-~eH~----~-------------------aA~~lR~LLA~Y~e~e~LI~lG--EY~~G~D~~~D~A~~~~~~i~ 405 (430)
T TIGR02546 352 MSQVVS-KEHR----R-------------------AAGKLRRLLAKYKEVELLIRLG--EYQPGSDPETDKAIDKIDAIR 405 (430)
T ss_pred CCCCCC-HHHH----H-------------------HHHHHHHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHHHHHH
T ss_conf 367788-7899----9-------------------9999999999999998898744--888998988999997577889
Q ss_pred HCC--CHHHCCCHHHHHHHHHHC
Q ss_conf 119--967683889999999702
Q gi|255764488|r 263 KVL--PLSERPSIEIVAQEVLQY 283 (290)
Q Consensus 263 ~~l--p~~~r~~~~e~~~~~~~~ 283 (290)
.|| +-+++.+|++.-|++...
T Consensus 406 ~FL~Q~~~E~~~~e~tl~~L~~~ 428 (430)
T TIGR02546 406 AFLRQSTDEKSSYEETLEQLHAL 428 (430)
T ss_pred HHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 87148887778989999999998
No 27
>KOG1373 consensus
Probab=65.15 E-value=3.2 Score=20.67 Aligned_cols=11 Identities=9% Similarity=0.111 Sum_probs=4.6
Q ss_pred HHHHHHHCCCH
Q ss_conf 99998311996
Q gi|255764488|r 257 AIEYGRKVLPL 267 (290)
Q Consensus 257 ~~e~l~~~lp~ 267 (290)
+..-|++|+|-
T Consensus 409 ~~keLnr~IPt 419 (476)
T KOG1373 409 MAKELNRYIPT 419 (476)
T ss_pred HHHHHHHHCCH
T ss_conf 99999864467
No 28
>PRK01345 heat shock protein HtpX; Provisional
Probab=62.93 E-value=11 Score=17.31 Aligned_cols=121 Identities=17% Similarity=0.249 Sum_probs=54.9
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997099811242489999999999999998589899999999999963578899666899999999999999741047
Q gi|255764488|r 16 GGFYAMGGNPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLKLLYILMYNLKKGSRN 95 (290)
Q Consensus 16 ~g~~~~GG~l~~f~~~~sllIV~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~eli~~l~el~~~~Rk~Gll 95 (290)
.|+.+ ||..+.+| ++++.++..+.+.+ -.-+.+.+....+..+++++.++.+.+.+++..+ |+-
T Consensus 20 vG~~~-gg~~g~~i---al~ia~~~~~~sy~---------~S~~lvl~~~~Ar~v~~~e~P~L~~iVe~La~~A---glp 83 (314)
T PRK01345 20 VGYLI-GGAGGMMI---ALVIAAGMNLFSYW---------NSDKMVLRMYGAQEVDERSAPELYRMVAELARRA---GLP 83 (314)
T ss_pred HHHHH-HCHHHHHH---HHHHHHHHHHHHHH---------HHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHC---CCC
T ss_conf 99998-26467999---99999999999999---------5299999980987798655669999999999976---989
Q ss_pred HHHH-HHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4476-4207421145553235530620279999999999963789899999999999999999621
Q gi|255764488|r 96 ETEN-HIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLK 160 (290)
Q Consensus 96 aLE~-~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~ 160 (290)
--+- -++++. ...|..-. +.++..=-+.+|+-- .-+.+|++..+-.|+....++...
T Consensus 84 ~P~v~Ii~~~~-pNAFAtG~---~~~~a~VaVT~GLL~----~L~~dELeaVlAHElsHI~n~D~~ 141 (314)
T PRK01345 84 MPKVYIIDNPQ-PNAFATGR---NPENAAVAATTGLLQ----RLSPEEVAGVMAHELAHVKNRDTL 141 (314)
T ss_pred CCEEEEECCCC-CCEEEECC---CCCCEEEEECHHHHH----HCCHHHHHHHHHHHHHHHHCCCHH
T ss_conf 98699965898-66367437---988769997089997----569999999999999999655499
No 29
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily; InterPro: IPR004812 The drug resistance transporter Bcr/CflA proteins are predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in Escherichia coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=61.88 E-value=8.5 Score=17.93 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHH--HHHHHHHHHCCHHH
Q ss_conf 899999999999999997099--8112424899999999--99999998589899
Q gi|255764488|r 3 TIIGLFITILCIIGGFYAMGG--NPYILIQPFEIVIVAG--AGLGGFVMANPLKV 53 (290)
Q Consensus 3 tIiGlv~~~~~I~~g~~~~GG--~l~~f~~~~sllIV~G--GtlaA~li~~p~~~ 53 (290)
++++.++++.=.++.+ -|| =+..|++.+.+..|+. |+++..++-+-+++
T Consensus 133 s~l~~~~~~~P~~aP~--~Ggai~~~~~l~WhaIF~~L~l~~~~l~a~~f~~~pE 185 (400)
T TIGR00710 133 SILMLVLALAPAVAPL--IGGAIYVLVFLSWHAIFAVLSLIGILLSALIFFLLPE 185 (400)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999878888--8699999985209999999999999999999985512
No 30
>TIGR00895 2A0115 MFS transporter, aromatic acid:H+ symporter (AAHS) family; InterPro: IPR004746 Benzoate transport proteins belong to this group. Benzyl alcohol, benzaldehyde, benzoate, and anthranilate are metabolized via catechol, cis,cis-muconate, and the beta-ketoadipate pathway in some bacteria.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=58.03 E-value=13 Score=16.78 Aligned_cols=57 Identities=11% Similarity=-0.016 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 6668999999999999999999999999999-99999999999999999957999689
Q gi|255764488|r 200 TAIGVSLTGTLLGIILSYSLCNPLTSQIKST-RLKQHRLYIIVKKALIAYMNGAIPQV 256 (290)
Q Consensus 200 ~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~-~~~e~~~~~~i~egi~~i~~g~~P~~ 256 (290)
...+..+..|-.|-++..+++.=++.|++.+ .---....--|.--++.-..-.+|..
T Consensus 298 ~~~~~~~~~~~~Gg~~G~~~~g~l~Drl~~~~~~~~~~l~~avf~~~~~~~~~~~~~~ 355 (413)
T TIGR00895 298 SKAAIVGALFNFGGVIGSIIFGWLADRLGPRFVTALLLLLGAVFAVLVGSSTLFSPTL 355 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7899999999998999999999999993761999999999999999999864102999
No 31
>KOG3972 consensus
Probab=55.68 E-value=11 Score=17.30 Aligned_cols=44 Identities=23% Similarity=0.488 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHH--------------HHHHHHHHHHHHHHHHHH
Q ss_conf 888899999999999961489789998--------------666899999999999999
Q gi|255764488|r 173 PAIGIVGAILGIIKAMGNLSQSPKILG--------------TAIGVSLTGTLLGIILSY 217 (290)
Q Consensus 173 PafGmiGTviGLI~ml~~l~d~p~~lG--------------~~iA~ALitTlYGv~lAn 217 (290)
-+||++-.|.-.|..++..++ |.++| ..+..-|+-||||+++=+
T Consensus 115 LgfGIiSgvFs~vN~lad~sG-PGtvGl~g~s~~~fl~sa~~al~iiLlHvfW~ivffd 172 (252)
T KOG3972 115 LGFGIISGVFSTVNALADFSG-PGTVGLHGDSPYFFLTSAFSALLIILLHVFWGIVFFD 172 (252)
T ss_pred CCHHHHHHHHHHHHHHHHCCC-CCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEH
T ss_conf 551678889999999986049-9700268996410299999999999999987712410
No 32
>KOG3762 consensus
Probab=51.61 E-value=16 Score=16.12 Aligned_cols=16 Identities=13% Similarity=-0.058 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|255764488|r 208 GTLLGIILSYSLCNPL 223 (290)
Q Consensus 208 tTlYGv~lAn~i~~Pi 223 (290)
|||....+|-++++=+
T Consensus 527 ttf~~~giAcl~~l~~ 542 (618)
T KOG3762 527 TTFRIFGIACLVTLAL 542 (618)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 33
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=49.09 E-value=18 Score=15.87 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|255764488|r 4 IIGLFITILCIIGGFY 19 (290)
Q Consensus 4 IiGlv~~~~~I~~g~~ 19 (290)
++|++.++.++..+.+
T Consensus 17 ~~Givg~LigiYla~~ 32 (266)
T PRK01030 17 AIGIVGGLVGIYLAYF 32 (266)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999996
No 34
>COG1299 FruA Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]
Probab=48.88 E-value=18 Score=15.85 Aligned_cols=92 Identities=23% Similarity=0.184 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999988888999999999999614897899----------------98666899999999999999999999999
Q gi|255764488|r 163 HAISHMGESLPAIGIVGAILGIIKAMGNLSQSPKI----------------LGTAIGVSLTGTLLGIILSYSLCNPLTSQ 226 (290)
Q Consensus 163 ~~~~~~a~~aPafGmiGTviGLI~ml~~l~d~p~~----------------lG~~iA~ALitTlYGv~lAn~i~~Pia~k 226 (290)
+.+++|++. ---++|.++|..... .++.|-++ .+....+|=...=.|..+|..++. |
T Consensus 162 ~~L~~m~~~--n~ilLG~ILG~M~a~-DmGGPvNKaAy~f~~gl~~~~~~~~~Aa~~~a~mvPPlgl~lAt~l~k----~ 234 (343)
T COG1299 162 DWLQSMGGS--NAILLGAILGAMMAF-DMGGPVNKAAYTFGLGLLAQGVYAPMAAVMAAGMVPPLGLGLATLLGK----K 234 (343)
T ss_pred HHHHHCCCC--CHHHHHHHHHHHHEE-ECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH----H
T ss_conf 999865663--499999998668333-068862999999999986355348899999971589579999999733----2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 999999999999999999999957999689999983
Q gi|255764488|r 227 IKSTRLKQHRLYIIVKKALIAYMNGAIPQVAIEYGR 262 (290)
Q Consensus 227 l~~~~~~e~~~~~~i~egi~~i~~g~~P~~~~e~l~ 262 (290)
.-.+.|+|. -+..+.-|+..|.+|.+|...++-+|
T Consensus 235 ~f~~~e~Ea-gka~~vmG~~~ItEGAIPfaa~dP~r 269 (343)
T COG1299 235 KFTAEEREA-GKAALVMGLSFITEGAIPFAAADPLR 269 (343)
T ss_pred HCCHHHHHH-HHHHHHHHCCCCCCCCCHHHHCCCCC
T ss_conf 075988841-07789883451234543445517610
No 35
>cd05089 PTKc_Tie1 Catalytic Domain of the Protein Tyrosine Kinase, Tie1. Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.
Probab=48.30 E-value=18 Score=15.94 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=26.7
Q ss_pred HHHHHHHHHHCC--CHHHCCCHHHHHHHHHHCCCCCCC
Q ss_conf 689999983119--967683889999999702434568
Q gi|255764488|r 254 PQVAIEYGRKVL--PLSERPSIEIVAQEVLQYNHNKKA 289 (290)
Q Consensus 254 P~~~~e~l~~~l--p~~~r~~~~e~~~~~~~~~~~~~a 289 (290)
|.-+.+.+..-+ .|++||+++|..+.+.+.-.++|+
T Consensus 244 ~~~l~~li~~Cw~~~P~~RPtf~eI~~~L~~il~~~k~ 281 (297)
T cd05089 244 DDEVYELMRQCWRDRPYERPPFAQISVQLSRMLEARKA 281 (297)
T ss_pred CHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 69999999998189966890989999999999973142
No 36
>pfam10255 Paf67 RNA polymerase I-associated factor PAF67. RNA polymerase I is a multisubunit enzyme and its transcription competence is dependent on the presence of PAF67. This family of proteins is conserved from worms to humans.
Probab=40.93 E-value=24 Score=15.08 Aligned_cols=83 Identities=14% Similarity=-0.000 Sum_probs=49.0
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHH
Q ss_conf 9999614897899986668999999999999999999999999999999999------------------9999999999
Q gi|255764488|r 185 IKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHR------------------LYIIVKKALI 246 (290)
Q Consensus 185 I~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~------------------~~~~i~egi~ 246 (290)
+.+|.+++=+...+=..+..|-+||+|=+.+||+...--+..++.-+.--.. .+.==|-.++
T Consensus 142 lk~L~~Idl~~~~l~~kV~~~~vs~~YyvGFaYlMlrRY~DAir~f~~iL~yi~r~k~~~~~~~q~d~i~K~~eqMy~Ll 221 (402)
T pfam10255 142 LKVLEPIDLSKKGLYSKVPAAYVSLYYYVGFAYLMLRRYADAIRVFSQILIYIQKTKYLHTQSYQYDAINKQSEKMYALL 221 (402)
T ss_pred HHHHHHHCCCCCHHHCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99752414463201024740402124588999999865899999999999999986563058704667878899999999
Q ss_pred HHHCCCCHHHHHHHHHHCCCH
Q ss_conf 995799968999998311996
Q gi|255764488|r 247 AYMNGAIPQVAIEYGRKVLPL 267 (290)
Q Consensus 247 ~i~~g~~P~~~~e~l~~~lp~ 267 (290)
+|+.--.|..+.|-..+.+-.
T Consensus 222 Aic~~l~p~~ldesi~~~lrE 242 (402)
T pfam10255 222 AICHVLSPIRLDENISQQLKE 242 (402)
T ss_pred HHHHHHCCCCCCHHHHHHHHH
T ss_conf 999984888733469998899
No 37
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=40.57 E-value=14 Score=16.50 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=9.1
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q ss_conf 98999999999999999996
Q gi|255764488|r 139 RSYEIENLMDEEIDIILYEK 158 (290)
Q Consensus 139 ~~~~i~~~L~~ei~~~~~~~ 158 (290)
.+.++-+-|+.+++..+++-
T Consensus 172 ~A~~lv~~Mk~~i~~v~~kv 191 (364)
T PRK09534 172 AAAETNAEMRDRVDAVADAV 191 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999986
No 38
>COG4061 MtrC Tetrahydromethanopterin S-methyltransferase, subunit C [Coenzyme metabolism]
Probab=40.46 E-value=23 Score=15.22 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHH
Q ss_conf 98666899999999-999999
Q gi|255764488|r 198 LGTAIGVSLTGTLL-GIILSY 217 (290)
Q Consensus 198 lG~~iA~ALitTlY-Gv~lAn 217 (290)
|--+..-++++++- |..-.|
T Consensus 202 L~la~e~g~i~~~vagl~~~~ 222 (262)
T COG4061 202 LTLAVECGFITWFVAGLAKLN 222 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHCC
T ss_conf 036676518999999873311
No 39
>COG4129 Predicted membrane protein [Function unknown]
Probab=40.35 E-value=25 Score=15.02 Aligned_cols=24 Identities=8% Similarity=-0.039 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 112424899999999999999985
Q gi|255764488|r 25 PYILIQPFEIVIVAGAGLGGFVMA 48 (290)
Q Consensus 25 l~~f~~~~sllIV~GGtlaA~li~ 48 (290)
...++.+..++-|+=|...|.+++
T Consensus 121 ~~~~~~~~r~l~~~vG~~~a~lvn 144 (332)
T COG4129 121 IPLFLIFNRFLLVFVGVGVAFLVN 144 (332)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 305677999999999999999985
No 40
>PRK11268 pstA phosphate transporter permease subunit; Provisional
Probab=39.78 E-value=25 Score=14.97 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=5.7
Q ss_pred HHHHHHHCCHHHHH
Q ss_conf 99999858989999
Q gi|255764488|r 42 LGGFVMANPLKVIK 55 (290)
Q Consensus 42 laA~li~~p~~~i~ 55 (290)
+.|.+++.|....-
T Consensus 91 ~~a~lia~Pigi~~ 104 (292)
T PRK11268 91 LWATVVGTPLGIMA 104 (292)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 41
>pfam06897 DUF1269 Protein of unknown function (DUF1269). This family consists of several bacterial and archaeal proteins of around 200 residues in length. The function of this family is unknown.
Probab=38.72 E-value=19 Score=15.69 Aligned_cols=16 Identities=25% Similarity=0.594 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 42489999999999999
Q gi|255764488|r 28 LIQPFEIVIVAGAGLGG 44 (290)
Q Consensus 28 f~~~~sllIV~GGtlaA 44 (290)
|++| =+-.++|...+|
T Consensus 15 F~~P-llG~avGA~~GA 30 (102)
T pfam06897 15 FLNP-LLGVAVGAAAGA 30 (102)
T ss_pred HHHH-HHHHHHHHHHHH
T ss_conf 9908-999999888777
No 42
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=38.07 E-value=27 Score=14.80 Aligned_cols=38 Identities=13% Similarity=0.125 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCCHHHH
Q ss_conf 99999999995799968999998311996768388999
Q gi|255764488|r 239 IIVKKALIAYMNGAIPQVAIEYGRKVLPLSERPSIEIV 276 (290)
Q Consensus 239 ~~i~egi~~i~~g~~P~~~~e~l~~~lp~~~r~~~~e~ 276 (290)
+.....+..+..-+.-+-+.+-.|-|+|.+.|+.|+++
T Consensus 40 d~l~~aL~~~L~~e~~~~Lld~IR~fIP~khr~rFD~l 77 (80)
T cd07354 40 DCLVWALCGLLQTEAHKKLLDEIRIFIPKKHRARFDEL 77 (80)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999885738788899772742881026788887
No 43
>COG3892 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.87 E-value=27 Score=14.78 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999985898999999999999635788996668-999999999999997410474476
Q gi|255764488|r 38 AGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTY-CDVLKLLYILMYNLKKGSRNETEN 99 (290)
Q Consensus 38 ~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~-~eli~~l~el~~~~Rk~GllaLE~ 99 (290)
+|+.+|+-++..|...+.+.+. |..+ .++... .+.-+.+.++++.+|+.|..-|-.
T Consensus 117 ~~~diGs~Lv~WP~ehvVKcL~-----FYHP-dD~a~lr~~Qe~k~~~l~eA~r~~g~ElLlE 173 (310)
T COG3892 117 FSGDIGSQLVEWPVEHVVKCLV-----FYHP-DDPAELRAEQEQKLLELFEAARKSGHELLLE 173 (310)
T ss_pred CCCCHHHHHHCCCHHHHEEEEE-----ECCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5653546774276865402345-----3189-9989998999999999999998630466555
No 44
>COG4591 LolE ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]
Probab=37.74 E-value=27 Score=14.76 Aligned_cols=41 Identities=34% Similarity=0.458 Sum_probs=29.2
Q ss_pred HHHHCCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99614897899-----986668999999999999999999999999
Q gi|255764488|r 187 AMGNLSQSPKI-----LGTAIGVSLTGTLLGIILSYSLCNPLTSQI 227 (290)
Q Consensus 187 ml~~l~d~p~~-----lG~~iA~ALitTlYGv~lAn~i~~Pia~kl 227 (290)
+|..|+-++.. +-.|+...+++|+-|++++++++.=+-.-.
T Consensus 304 ILrtmGa~~~~I~~iFl~~G~~iG~iG~llG~iLG~~~~~~i~~~~ 349 (408)
T COG4591 304 ILRAMGASPSHIMRIFLLQGLIIGLIGALLGVILGVLLALNLNSII 349 (408)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998299867899999999899999999999999999999987787
No 45
>cd05116 PTKc_Syk Catalytic Domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio
Probab=37.69 E-value=27 Score=14.76 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=22.6
Q ss_pred HHHHHHHHHHCC--CHHHCCCHHHHHHHHHHC
Q ss_conf 689999983119--967683889999999702
Q gi|255764488|r 254 PQVAIEYGRKVL--PLSERPSIEIVAQEVLQY 283 (290)
Q Consensus 254 P~~~~e~l~~~l--p~~~r~~~~e~~~~~~~~ 283 (290)
|.-+.+.++.-+ .|++||++++.++.++++
T Consensus 224 ~~~l~~li~~Cw~~~P~~RPsf~~i~~~L~~~ 255 (257)
T cd05116 224 PPEMYDLMKLCWTYGVDERPGFAVVELRLRNY 255 (257)
T ss_pred CHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHH
T ss_conf 89999999998178965790999999998865
No 46
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=37.45 E-value=27 Score=14.74 Aligned_cols=62 Identities=19% Similarity=0.237 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 6899999999999999741047447642074211455532355306202799999999999637898999999999
Q gi|255764488|r 74 TYCDVLKLLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDE 149 (290)
Q Consensus 74 ~~~eli~~l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ 149 (290)
...+++....++.+...|..+..-+ .|-+.-+....+|+..+++++-+|..++++|...|..
T Consensus 159 Ts~e~v~~~~~~~~~lGK~pV~v~d--------------~pGFi~NRi~~~~~~EA~~l~eeGvA~~e~ID~a~r~ 220 (503)
T PRK08268 159 TDPAVADALYALARRWGHTPVRAKD--------------TPGFIVNHAGRPYYTEALRVLGEGVADFATIDAILRE 220 (503)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEECC--------------CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 9999999999999982980489557--------------8982088775489999999998289999999999996
No 47
>PRK02391 heat shock protein HtpX; Provisional
Probab=37.20 E-value=27 Score=14.71 Aligned_cols=95 Identities=9% Similarity=0.043 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 9999999996357889966689999999999999974104744764-207421145553235530620279999999999
Q gi|255764488|r 55 KDSGVSLLEIFGYKALGQDTYCDVLKLLYILMYNLKKGSRNETENH-IDDPYNSTIFTSIPTVLENNELTTFICDYMRMI 133 (290)
Q Consensus 55 ~~~~~~l~~~f~~~~~~~~~~~eli~~l~el~~~~Rk~GllaLE~~-ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~ 133 (290)
...-+.+.+....+..++++..++.+.+.+++.+ -|+---+-. ++++.-+ -|..-. ...+..=.+.+|+
T Consensus 56 ~~sd~~vl~~~~a~~v~~~~~p~l~~~Ve~la~~---agip~P~vyI~~~~~pN-AFAtG~---~~~~a~V~vT~GL--- 125 (297)
T PRK02391 56 FFSDKLALWSMGARIVSEEEAPELHGTVDRLCAL---ADLPKPRVAVADTDVPN-AFATGR---SPKNAVVCVTTGL--- 125 (297)
T ss_pred HHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHH---CCCCCCEEEEECCCCCC-EEEECC---CCCCEEEEECHHH---
T ss_conf 9679999998399658800148999999999997---69897958995289976-257458---9987699975798---
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 963789899999999999999999621
Q gi|255764488|r 134 IVGNARSYEIENLMDEEIDIILYEKLK 160 (290)
Q Consensus 134 v~g~~~~~~i~~~L~~ei~~~~~~~~~ 160 (290)
++ .-+++|++.++-.|+....+++..
T Consensus 126 L~-~L~~dEL~aVLAHEl~Hikn~Dil 151 (297)
T PRK02391 126 LR-RLDPEELEAVLAHELSHVKNRDVA 151 (297)
T ss_pred HH-HCCHHHHHHHHHHHHHHHHCCCHH
T ss_conf 86-399999999999999999715299
No 48
>PRK01265 heat shock protein HtpX; Provisional
Probab=36.30 E-value=28 Score=14.62 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8989999999999999999962
Q gi|255764488|r 138 ARSYEIENLMDEEIDIILYEKL 159 (290)
Q Consensus 138 ~~~~~i~~~L~~ei~~~~~~~~ 159 (290)
-+.+|++..+-.|+....+|..
T Consensus 134 L~~dELegVlAHEl~HI~nrD~ 155 (326)
T PRK01265 134 LNPDEIKAVIGHELGHLKHRDV 155 (326)
T ss_pred CCHHHHHHHHHHHHHHHHCCCH
T ss_conf 7999999999999989845348
No 49
>TIGR01083 nth endonuclease III; InterPro: IPR005759 The spectrum of DNA damage caused by reactive oxygen species includes a wide variety of modifications of purine and pyrimidine bases. Among these modified bases, 7,8-dihydro-8-oxoguanine (8-oxoG) is an important mutagenic lesion. Base excision repair is a critical mechanism for preventing mutations by removing the oxidative lesion from the DNA. Escherichia coli Nth protein (endonuclease III) has an 8-oxoG DNA glycosylase/AP lyase activity which removes 8-oxoG preferentially from 8-oxoG/G mispairs. Human hNTH1 protein, a homolog of E. coli Nth protein, has similar DNA glycosylase/AP lyase activity that removes 8-oxoG from 8-oxoG/G mispairs . ; GO: 0003906 DNA-(apurinic or apyrimidinic site) lyase activity, 0006284 base-excision repair, 0005622 intracellular.
Probab=35.76 E-value=19 Score=15.79 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=27.2
Q ss_pred HHHHCCCCHHHHHHHHHHCCCHHHCCCHHHHHHHHHHCC
Q ss_conf 999579996899999831199676838899999997024
Q gi|255764488|r 246 IAYMNGAIPQVAIEYGRKVLPLSERPSIEIVAQEVLQYN 284 (290)
Q Consensus 246 ~~i~~g~~P~~~~e~l~~~lp~~~r~~~~e~~~~~~~~~ 284 (290)
+++..+.+|.-+|+.|...+|.+.+.. ..-++-.++
T Consensus 146 lgl~~~~dp~~vE~~L~~l~P~~~w~~---~hh~lIlHG 181 (192)
T TIGR01083 146 LGLSKGKDPDKVEEELLKLIPKEFWTK---LHHWLILHG 181 (192)
T ss_pred HCCCCCCCHHHHHHHHHHHCCCCCHHH---CCHHHHHHC
T ss_conf 135777898999999987448500122---236754311
No 50
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=35.08 E-value=25 Score=14.98 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=10.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 989999999999999999962128999
Q gi|255764488|r 139 RSYEIENLMDEEIDIILYEKLKPYHAI 165 (290)
Q Consensus 139 ~~~~i~~~L~~ei~~~~~~~~~~~~~~ 165 (290)
+.++..++||+ ++..++|......++
T Consensus 254 e~~e~Q~vLe~-~n~~h~RL~k~l~l~ 279 (941)
T TIGR00763 254 EIEELQEVLET-VNIEHKRLKKALELL 279 (941)
T ss_pred CHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_conf 62689999874-085257899999998
No 51
>cd05044 PTKc_c-ros Catalytic Domain of the Protein Tyrosine Kinase, C-ros. Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male
Probab=34.55 E-value=30 Score=14.44 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=20.6
Q ss_pred HHHHHHHHHHCC--CHHHCCCHHHHHHHHHH
Q ss_conf 689999983119--96768388999999970
Q gi|255764488|r 254 PQVAIEYGRKVL--PLSERPSIEIVAQEVLQ 282 (290)
Q Consensus 254 P~~~~e~l~~~l--p~~~r~~~~e~~~~~~~ 282 (290)
|.-+.+-++.-+ .|++||++++.-++++|
T Consensus 240 ~~~l~~li~~cl~~dP~~RPs~~~i~~~L~~ 270 (270)
T cd05044 240 PDKLYNLMTNCWAKDPSERPTFDRIQETLQN 270 (270)
T ss_pred CHHHHHHHHHHHCCCHHHCCCHHHHHHHHCC
T ss_conf 0999999999828796679099999998369
No 52
>pfam11299 DUF3100 Protein of unknown function (DUF3100). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=34.48 E-value=30 Score=14.44 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999614897899986668999999999999999999999999999
Q gi|255764488|r 179 GAILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKST 230 (290)
Q Consensus 179 GTviGLI~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~ 230 (290)
+++=.|+.+.-.+.| +.+.-+=+.-++|++.|+.+.-++-+|+++|+..+
T Consensus 189 Aa~~aL~a~~P~~a~--~i~a~AaaSNllt~~~G~Y~~~flaLPl~~~lY~~ 238 (239)
T pfam11299 189 AASGALAAAYPEMAD--QILAFAAASNLLTTVTGTYVGLFIALPLAEKLYKK 238 (239)
T ss_pred HHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999989886913389--99999999999998889999999997569998752
No 53
>TIGR02545 ATP_syn_fliI flagellar protein export ATPase FliI; InterPro: IPR013379 FliI proteins are involved in bacterial flagellum systems, acting to drive protein export for flagellar biosynthesis. The most closely related proteins are the YscN proteins of bacterial type III secretion systems.; GO: 0016887 ATPase activity, 0001539 ciliary or flagellar motility, 0009296 flagellum biogenesis, 0009288 flagellin-based flagellum.
Probab=33.85 E-value=31 Score=14.37 Aligned_cols=181 Identities=17% Similarity=0.248 Sum_probs=118.7
Q ss_pred CCHHHHHHHHHHHH--HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC-------
Q ss_conf 89899999999999--963578899666899999999999999741047447642074211455532355306-------
Q gi|255764488|r 49 NPLKVIKDSGVSLL--EIFGYKALGQDTYCDVLKLLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLEN------- 119 (290)
Q Consensus 49 ~p~~~i~~~~~~l~--~~f~~~~~~~~~~~eli~~l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~------- 119 (290)
.|+-.++.++.++. .-|+... ++ +.=+++=+..++.-.|.=|+.+-|.-.=.=|-++.|+..|.+++-
T Consensus 225 spl~R~~aA~~A~~iAEYFRDqG--k~-VLL~~DSlTRFAmAqREigLa~GEPP~tkGYpPSVF~~Lp~L~ERaG~~p~~ 301 (439)
T TIGR02545 225 SPLMRIRAAYAATAIAEYFRDQG--KD-VLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPPSVFSELPRLLERAGIVPGA 301 (439)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCC--CC-EEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 68999888899999999998649--83-4776211788998988999871787666789704899999999870864698
Q ss_pred ----------------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----------------2027999999999996378989999999999999999962128999999999888889999999
Q gi|255764488|r 120 ----------------NELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLKPYHAISHMGESLPAIGIVGAILG 183 (290)
Q Consensus 120 ----------------~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~~~~~~~~~a~~aPafGmiGTviG 183 (290)
.+..+-+.|.+|-++||. - +|+.++ -++-|.-++++++++.-.+|
T Consensus 302 ~~~GsITa~yTVLVeGDD~~ePiAD~~RgiLDGH----I---vLsR~l--A~~G~YPaIDvl~SiSR~m~---------- 362 (439)
T TIGR02545 302 KGGGSITAFYTVLVEGDDMNEPIADAVRGILDGH----I---VLSRKL--AERGHYPAIDVLRSISRLMP---------- 362 (439)
T ss_pred CCCCEEEEEEEEEEECCCCCCHHHHHHHHHCCCE----E---EECHHH--HHCCCCCCCCCCHHHHHHHH----------
T ss_conf 8873056899998736899873787750010220----7---732267--64588987572222788777----------
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH-----HH
Q ss_conf 9999961489789998666899999999999999999999999999999999999999999999957999689-----99
Q gi|255764488|r 184 IIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYIIVKKALIAYMNGAIPQV-----AI 258 (290)
Q Consensus 184 LI~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~i~egi~~i~~g~~P~~-----~~ 258 (290)
++- +|+.. ..+.++|.....=.....||.=| +++.|.||.+ ..
T Consensus 363 ------~i~-~~e~~-----------------------~~a~~~r~l~a~Y~~~eDLi~iG--aY~~GSdp~~D~AI~~~ 410 (439)
T TIGR02545 363 ------DIV-SPEHN-----------------------KAARKLRKLLATYKDAEDLIRIG--AYKKGSDPEVDKAIKLY 410 (439)
T ss_pred ------HHC-CHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHH
T ss_conf ------627-98899-----------------------99999999999888889999817--86468887899985100
Q ss_pred HHHHHCCCHH--HCCCHHHHHHHHHHC
Q ss_conf 9983119967--683889999999702
Q gi|255764488|r 259 EYGRKVLPLS--ERPSIEIVAQEVLQY 283 (290)
Q Consensus 259 e~l~~~lp~~--~r~~~~e~~~~~~~~ 283 (290)
+++..||-.+ |+.++++.-+.+++.
T Consensus 411 p~i~~FL~Q~~~E~~~~~~~~~~L~~i 437 (439)
T TIGR02545 411 PKIEAFLRQDIEEASSFEESLEALKEI 437 (439)
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 258998467975455778999999998
No 54
>COG4803 Predicted membrane protein [Function unknown]
Probab=33.50 E-value=29 Score=14.53 Aligned_cols=84 Identities=19% Similarity=0.221 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 9999999999961489789998666899999999999999999999999999-999999999999999999957999689
Q gi|255764488|r 178 VGAILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKS-TRLKQHRLYIIVKKALIAYMNGAIPQV 256 (290)
Q Consensus 178 iGTviGLI~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~-~~~~e~~~~~~i~egi~~i~~g~~P~~ 256 (290)
-|.++|++-.+--++ -++| +.+.|+-+.|+-+-.-.-|..-++.++.- .+.-=...+.+.-|-+++-.+|.++++
T Consensus 68 WG~LiGllFl~Pl~G---~avG-Aa~GAl~g~l~DvGIdDdFik~l~~ti~pG~sALFvLi~k~t~DKVl~~~~g~~g~v 143 (170)
T COG4803 68 WGMLIGLLFLNPLLG---MAVG-AASGALSGSLTDVGIDDDFIKELGETIQPGSSALFVLISKMTEDKVLADLSGFGGTV 143 (170)
T ss_pred HHHHHHHHHHHHHHH---HHHH-HHHHHHCCCEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHCCCCEE
T ss_conf 999999999958999---8998-865120342000376778999998416999747998742256677999864458789
Q ss_pred HHHHHHHCCCHHH
Q ss_conf 9999831199676
Q gi|255764488|r 257 AIEYGRKVLPLSE 269 (290)
Q Consensus 257 ~~e~l~~~lp~~~ 269 (290)
+|+.|.+++
T Consensus 144 ----lrTSLs~e~ 152 (170)
T COG4803 144 ----LRTSLSKEE 152 (170)
T ss_pred ----EECCCCHHH
T ss_conf ----871489779
No 55
>cd05056 PTKc_FAK Catalytic Domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK) family; Focal Adhesion kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions
Probab=32.39 E-value=33 Score=14.22 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=25.8
Q ss_pred HHHHHHHHHHCC--CHHHCCCHHHHHHHHHHCCCCCC
Q ss_conf 689999983119--96768388999999970243456
Q gi|255764488|r 254 PQVAIEYGRKVL--PLSERPSIEIVAQEVLQYNHNKK 288 (290)
Q Consensus 254 P~~~~e~l~~~l--p~~~r~~~~e~~~~~~~~~~~~~ 288 (290)
|-.+.+.++.-+ .|++||+++|+.+.+.+.-.++|
T Consensus 234 ~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~i~~~e~ 270 (270)
T cd05056 234 PPTLYSLMTKCWAYDPSKRPRFTELKAQLSDILQEEK 270 (270)
T ss_pred CHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 9999999999817897689299999999999996569
No 56
>cd05070 PTKc_Fyn_Yrk Catalytic Domain of the Protein Tyrosine Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r
Probab=32.37 E-value=33 Score=14.22 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHCC--CHHHCCCHHHHHHHHHHC
Q ss_conf 99689999983119--967683889999999702
Q gi|255764488|r 252 AIPQVAIEYGRKVL--PLSERPSIEIVAQEVLQY 283 (290)
Q Consensus 252 ~~P~~~~e~l~~~l--p~~~r~~~~e~~~~~~~~ 283 (290)
..|..+.+-++.-+ .|++||+++++-+.+.++
T Consensus 227 ~~p~~l~~li~~c~~~dP~~RPs~~~l~~~Le~~ 260 (260)
T cd05070 227 DCPISLHELMLQCWKKDPEERPTFEYLQSFLEDY 260 (260)
T ss_pred CCCHHHHHHHHHHHCCCHHHCCCHHHHHHHHHCC
T ss_conf 6789999999998187966792999999997188
No 57
>cd05034 PTKc_Src_like Catalytic Domain of Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t
Probab=31.99 E-value=33 Score=14.18 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=21.7
Q ss_pred HHHHHHHHHHCC--CHHHCCCHHHHHHHHHHC
Q ss_conf 689999983119--967683889999999702
Q gi|255764488|r 254 PQVAIEYGRKVL--PLSERPSIEIVAQEVLQY 283 (290)
Q Consensus 254 P~~~~e~l~~~l--p~~~r~~~~e~~~~~~~~ 283 (290)
|.-+.+-+..-+ .|++||+++++-+.+.++
T Consensus 230 ~~~l~~li~~c~~~dP~~RPt~~~i~~~Le~~ 261 (261)
T cd05034 230 PDELYDIMLQCWDKDPEERPTFEYLQSFLEDY 261 (261)
T ss_pred CHHHHHHHHHHHCCCHHHCCCHHHHHHHHHCC
T ss_conf 49999999998187966792999999997197
No 58
>cd05115 PTKc_Zap-70 Catalytic Domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa. Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho
Probab=31.60 E-value=34 Score=14.14 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHCC--CHHHCCCHHHHHHHHHHC
Q ss_conf 99689999983119--967683889999999702
Q gi|255764488|r 252 AIPQVAIEYGRKVL--PLSERPSIEIVAQEVLQY 283 (290)
Q Consensus 252 ~~P~~~~e~l~~~l--p~~~r~~~~e~~~~~~~~ 283 (290)
+-|.-+.+..+.-+ .|++||++++..+++++.
T Consensus 222 ~~p~~l~~li~~Cw~~~P~~RPt~~~i~~~L~~~ 255 (257)
T cd05115 222 ECPPEMYALMKDCWIYKWEDRPNFAKVEERMRTY 255 (257)
T ss_pred CCCHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHH
T ss_conf 7769999999998278966790999999999876
No 59
>PRK00972 tetrahydromethanopterin S-methyltransferase subunit E; Provisional
Probab=31.05 E-value=34 Score=14.08 Aligned_cols=22 Identities=5% Similarity=-0.000 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 9999999999999858989999
Q gi|255764488|r 34 IVIVAGAGLGGFVMANPLKVIK 55 (290)
Q Consensus 34 llIV~GGtlaA~li~~p~~~i~ 55 (290)
+..-++|+++.+++.+.++.+.
T Consensus 67 l~~~i~g~va~~l~~~~~~~il 88 (293)
T PRK00972 67 LWCAIAGAVAWALITFGLNPLL 88 (293)
T ss_pred HHHHHHHHHHHHHHHCCCCHHH
T ss_conf 8999889999999985840999
No 60
>cd05110 PTKc_HER4 Catalytic Domain of the Protein Tyrosine Kinase, HER4. Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin
Probab=30.55 E-value=32 Score=14.29 Aligned_cols=32 Identities=16% Similarity=0.070 Sum_probs=23.5
Q ss_pred HHHHHHHHHHCC--CHHHCCCHHHHHHHHHHCCC
Q ss_conf 689999983119--96768388999999970243
Q gi|255764488|r 254 PQVAIEYGRKVL--PLSERPSIEIVAQEVLQYNH 285 (290)
Q Consensus 254 P~~~~e~l~~~l--p~~~r~~~~e~~~~~~~~~~ 285 (290)
|.-+.+.+..-. .|++||+|+|.-+++.+..+
T Consensus 237 p~~l~~lm~~Cw~~~P~~RPtf~eI~~~L~~~~~ 270 (303)
T cd05110 237 TIDVYMVMVKCWMIDADSRPKFKELAAEFSRMAR 270 (303)
T ss_pred CHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999999828885579098999999999985
No 61
>pfam10367 Vps39_2 Vacuolar sorting protein 39 domain 2. This domain is found on the vacuolar sorting protein Vps39 which is a component of the C-Vps complex. Vps39 is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole. In Saccharomyces cerevisiae, Vps39 has been shown to stimulate nucleotide exchange. This domain is involved in localisation and in mediating the interactions of Vps39 with Vps11.
Probab=30.46 E-value=35 Score=14.02 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=33.6
Q ss_pred HHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 6420742114555323553062027999999999996378989999999999999999
Q gi|255764488|r 99 NHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILY 156 (290)
Q Consensus 99 ~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~ 156 (290)
.|-+..+-..+++..|+.+.-.+..+|+...+|-......+....+.+++.+.-..++
T Consensus 6 ~h~~~id~~~vL~lLP~~~~l~~l~~fL~~~lr~~~~~~~~~~i~~~L~~~~~~~~~~ 63 (109)
T pfam10367 6 KHGERIDPASVLDLLPDDVPLQLLESFLERALRNSTEQKREAQVVKNLLKAENLQVEE 63 (109)
T ss_pred HHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7585389999996579988099999999999999999999999999999999999999
No 62
>cd06620 PKc_MAPKK_Byr1_like Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis
Probab=29.68 E-value=36 Score=13.93 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=17.2
Q ss_pred HHHHHHHHHHCC--CHHHCCCHHHHH
Q ss_conf 689999983119--967683889999
Q gi|255764488|r 254 PQVAIEYGRKVL--PLSERPSIEIVA 277 (290)
Q Consensus 254 P~~~~e~l~~~l--p~~~r~~~~e~~ 277 (290)
|..+.+-++.-| .|++||+++|+-
T Consensus 239 s~~~~dli~~cL~~dP~~Rpt~~ell 264 (284)
T cd06620 239 PEDLRDFVDACLLKDPTERPTPQQLC 264 (284)
T ss_pred CHHHHHHHHHHCCCCHHHCCCHHHHH
T ss_conf 99999999998579966890899996
No 63
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=29.64 E-value=36 Score=13.93 Aligned_cols=31 Identities=13% Similarity=-0.057 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7899986668999999999999999999999
Q gi|255764488|r 194 SPKILGTAIGVSLTGTLLGIILSYSLCNPLT 224 (290)
Q Consensus 194 ~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia 224 (290)
+...+|..+..+.++..|..+.++.++..+.
T Consensus 345 ~~~~l~~Ql~g~~~~~~~~~~~t~ii~~~l~ 375 (404)
T TIGR03644 345 GDASFGAQLIGAATIFAWVFVTSLIVWFILK 375 (404)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7149999999999854279999999999999
No 64
>PRK09204 secY preprotein translocase subunit SecY; Reviewed
Probab=29.46 E-value=35 Score=14.01 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=11.5
Q ss_pred CCHHHHHHHHHH---CCCHHHCCC
Q ss_conf 996899999831---199676838
Q gi|255764488|r 252 AIPQVAIEYGRK---VLPLSERPS 272 (290)
Q Consensus 252 ~~P~~~~e~l~~---~lp~~~r~~ 272 (290)
-||.-+.|.++. |+|- -||.
T Consensus 328 ~np~~iAe~l~k~g~~IPG-iRPG 350 (427)
T PRK09204 328 FNPEEIAENLKKSGGFIPG-IRPG 350 (427)
T ss_pred CCHHHHHHHHHHCCCCCCC-CCCC
T ss_conf 6889999999987985789-8999
No 65
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD; InterPro: IPR014138 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are related families..
Probab=28.76 E-value=38 Score=13.84 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=51.5
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHH
Q ss_conf 99999998589899999999999963578899666899999999999-9997410474476-420742114555323553
Q gi|255764488|r 40 AGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLKLLYILM-YNLKKGSRNETEN-HIDDPYNSTIFTSIPTVL 117 (290)
Q Consensus 40 GtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~eli~~l~el~-~~~Rk~GllaLE~-~ie~p~~s~i~~~~~~~~ 117 (290)
|--.|+.+++|...+.-.+.. .+...|++...-.+. +.+|+--..+++. -++||+. ++++||.-+
T Consensus 67 g~~~~~imQnPr~AFNPl~tm-----------~~h~~ETl~~~~k~~k~~A~~~~~~~l~~VgL~~~~~--~L~~YPF~L 133 (239)
T TIGR02770 67 GRHIATIMQNPRTAFNPLLTM-----------AEHAIETLRSLGKLSKKQARALILEALEAVGLEDPEE--VLKKYPFQL 133 (239)
T ss_pred HHHHHHHCCCCCCCCHHHHHH-----------HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH--HHHHCCCCC
T ss_conf 666301102850000167639-----------9999999997217461017999999998638522799--997466413
Q ss_pred HCHHH
Q ss_conf 06202
Q gi|255764488|r 118 ENNEL 122 (290)
Q Consensus 118 ~~~~~ 122 (290)
.+..+
T Consensus 134 SGGML 138 (239)
T TIGR02770 134 SGGML 138 (239)
T ss_pred CCCHH
T ss_conf 68627
No 66
>PRK07660 consensus
Probab=28.75 E-value=38 Score=13.83 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=15.4
Q ss_pred HHCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 3062027999999999996378989999999
Q gi|255764488|r 117 LENNELTTFICDYMRMIIVGNARSYEIENLM 147 (290)
Q Consensus 117 ~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L 147 (290)
.-+....++++.+++++-+|..++++++..+
T Consensus 188 i~NRl~~~~~~ea~~lv~eGva~~e~iD~~~ 218 (283)
T PRK07660 188 VSNRILLPMINEAIYTLYEGVATKEAIDEVM 218 (283)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 2798789999999999981999999999986
No 67
>KOG0760 consensus
Probab=27.95 E-value=39 Score=13.75 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 9998666899999------999999999999999999999999999999999999999957999689999
Q gi|255764488|r 196 KILGTAIGVSLTG------TLLGIILSYSLCNPLTSQIKSTRLKQHRLYIIVKKALIAYMNGAIPQVAIE 259 (290)
Q Consensus 196 ~~lG~~iA~ALit------TlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~i~egi~~i~~g~~P~~~~e 259 (290)
..++.+.|.|+.| |+|-+--.-.+++++..|.+..++.-...++. .|+.+.-+|--||++..
T Consensus 209 GalaGa~Aaa~TTPLDvvKT~Lq~q~s~~~~~~~~~k~~gi~~a~R~Iy~~--~G~~gf~rG~~~Rm~~~ 276 (302)
T KOG0760 209 GALAGALAAALTTPLDVVKTLLQTQGSSALSILIRRKASGISDAFRTIYQK--HGVKGFFRGLKPRMVYN 276 (302)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHH--CCCHHHHHCCCCEEEEC
T ss_conf 356677788737839999999976100236788887540199999999973--37215654566404303
No 68
>pfam05237 MoeZ_MoeB MoeZ/MoeB domain. This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved.
Probab=27.77 E-value=26 Score=14.90 Aligned_cols=20 Identities=25% Similarity=0.624 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHC
Q ss_conf 88888999999999999614
Q gi|255764488|r 172 LPAIGIVGAILGIIKAMGNL 191 (290)
Q Consensus 172 aPafGmiGTviGLI~ml~~l 191 (290)
+-..|++|+++|+|..|+..
T Consensus 16 C~~~GVlg~~~givgslqa~ 35 (77)
T pfam05237 16 CATAGVLGPVVGTIGSLQAL 35 (77)
T ss_pred CHHCCCCHHHHHHHHHHHHH
T ss_conf 02148452189999999999
No 69
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=27.26 E-value=23 Score=15.26 Aligned_cols=78 Identities=12% Similarity=0.166 Sum_probs=38.5
Q ss_pred HHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-HH--HHHHHH-------------------HHHH
Q ss_conf 3235530620279999999999963789899999999999999999-62--128999-------------------9999
Q gi|255764488|r 112 SIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYE-KL--KPYHAI-------------------SHMG 169 (290)
Q Consensus 112 ~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~-~~--~~~~~~-------------------~~~a 169 (290)
.|+..++....+.++ ++..+++|..+.. +.|.++.+..-..... .- .+...+ ..-.
T Consensus 72 ~~~~~l~~~n~~~l~-~~~D~ViD~~Dn~-~tr~~l~~~~~~~~~~plv~as~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 149 (174)
T cd01487 72 AINIKIDENNLEGLF-GDCDIVVEAFDNA-ETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICGDLVN 149 (174)
T ss_pred EEECCCCHHHHHHHH-HCCCEEEECCCCH-HHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEECCCCCCCEEECCCCCC
T ss_conf 991444999999998-3799999999998-99999999999987995999974510866057736999987635689766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9988888999999999999614
Q gi|255764488|r 170 ESLPAIGIVGAILGIIKAMGNL 191 (290)
Q Consensus 170 ~~aPafGmiGTviGLI~ml~~l 191 (290)
..++..|++|+++|+|..|+..
T Consensus 150 ~~~~~~GVlgP~VgiigslQA~ 171 (174)
T cd01487 150 EAKEGLGLMAPRVNICAAHQAN 171 (174)
T ss_pred CCCCCCCCHHHHHHHHHHHHHH
T ss_conf 6666788636799999999999
No 70
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=27.10 E-value=40 Score=13.65 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHCCCCH
Q ss_conf 99999999999637898
Q gi|255764488|r 124 TFICDYMRMIIVGNARS 140 (290)
Q Consensus 124 ~fl~~~l~~~v~g~~~~ 140 (290)
++++.+++++-+|..++
T Consensus 196 ~~~~Ea~~lv~eGva~~ 212 (292)
T PRK07530 196 PMINEAIYTLYEGVGSV 212 (292)
T ss_pred HHHHHHHHHHHCCCCCH
T ss_conf 99999999998199999
No 71
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=26.21 E-value=42 Score=13.55 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 998888899999999999961489
Q gi|255764488|r 170 ESLPAIGIVGAILGIIKAMGNLSQ 193 (290)
Q Consensus 170 ~~aPafGmiGTviGLI~ml~~l~d 193 (290)
...|+.+ +|-+.+.|.+-.|+-|
T Consensus 178 ~ll~slp-~gil~~~Il~aNNirD 200 (303)
T COG1575 178 ILLPSLP-VGILIANILLANNLRD 200 (303)
T ss_pred HHHHHHH-HHHHHHHHHHHCCCCC
T ss_conf 8999999-9999999998621334
No 72
>pfam04206 MtrE Tetrahydromethanopterin S-methyltransferase, subunit E. The N5-methyltetrahydromethanopterin: coenzyme M (EC:2.1.1.86) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump.
Probab=26.16 E-value=42 Score=13.54 Aligned_cols=29 Identities=24% Similarity=0.309 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99986668999999999999999999999
Q gi|255764488|r 196 KILGTAIGVSLTGTLLGIILSYSLCNPLT 224 (290)
Q Consensus 196 ~~lG~~iA~ALitTlYGv~lAn~i~~Pia 224 (290)
+.++|-|+-||++||-=+.+||+...|+.
T Consensus 124 ~~~~~i~~h~FIa~fci~~~aYlm~~~l~ 152 (269)
T pfam04206 124 SHLGPIAGHGFIVTFCIVGVAYLMTLPLK 152 (269)
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 51304778899999999999999988605
No 73
>TIGR02615 spoVE stage V sporulation protein E; InterPro: IPR013438 Like FtsW, SpoVE proteins are encoded in a peptidoglycan operon context, but found only in endospore-forming bacteria such as Bacillus, Geobacillus and Oceanobacillus. In these genera they are part of a larger set of paralogs (not just the pair FtsW and RodA) and are required specifically for sporulation, not for viability..
Probab=26.02 E-value=42 Score=13.53 Aligned_cols=177 Identities=18% Similarity=0.112 Sum_probs=95.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-------HHHHH-
Q ss_conf 0998112424899999999999999985898999999999999635788996668999999999999-------99741-
Q gi|255764488|r 21 MGGNPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLKLLYILMY-------NLKKG- 92 (290)
Q Consensus 21 ~GG~l~~f~~~~sllIV~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~eli~~l~el~~-------~~Rk~- 92 (290)
+-.+.-.|..=..+.=.+|=...-..++-+-..+|+.-|.+--+- .+-++.-+.- -+||.
T Consensus 30 k~~D~~YFlKRQ~l~A~~G~~aM~f~mnvdY~~~k~~~k~ll~I~------------~vLL~lVlipGvG~~r~ga~~WI 97 (356)
T TIGR02615 30 KFNDSFYFLKRQLLFAILGVFAMFFTMNVDYYTWKRWAKMLLVIC------------FVLLLLVLIPGVGMERNGARRWI 97 (356)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------------HHHHHHHHHCCCCEEECCCCCEE
T ss_conf 337518999999999999999999998516367899977999999------------99999997357536767831102
Q ss_pred --HHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --047447642074211455532355306202799999999999637898999999999999999996212899999999
Q gi|255764488|r 93 --SRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLKPYHAISHMGE 170 (290)
Q Consensus 93 --GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~~~~~~~~~a~ 170 (290)
|.-+.. |. ||.|=+ |=--+.+.-++|.+-.+.|+ -+
T Consensus 98 g~G~fs~Q-----PS------------------E~~K~~-----------------liiyLAk~l~~~~~~i~sl~--~G 135 (356)
T TIGR02615 98 GVGAFSIQ-----PS------------------EIAKYA-----------------LIIYLAKYLSEKQEYITSLR--KG 135 (356)
T ss_pred ECCCCCCC-----HH------------------HHHHHH-----------------HHHHHHHHHHHCCCHHHHHH--CC
T ss_conf 21574327-----46------------------899999-----------------99999988641463000211--35
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9888889999999999996148978999-866689999999999999999999999999999999999999999999995
Q gi|255764488|r 171 SLPAIGIVGAILGIIKAMGNLSQSPKIL-GTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYIIVKKALIAYM 249 (290)
Q Consensus 171 ~aPafGmiGTviGLI~ml~~l~d~p~~l-G~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~i~egi~~i~ 249 (290)
.-|..|++|+-.|||..=.|++- ...+ ...+=.=|++ |+=+++++++ .-...-+-++..
T Consensus 136 ~iP~L~~~g~~fglim~qp~lst-a~v~~~~~~vmlFVA---GA~lsh~~~l----------------~~~~~~~gva~~ 195 (356)
T TIGR02615 136 VIPVLLLAGVAFGLIMLQPNLST-ATVIVLVCVVMLFVA---GARLSHLIIL----------------VGIGISGGVALI 195 (356)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHH---HHHHHHHHHH----------------HHHHHHHHHHHH
T ss_conf 02348999999989870667661-377888999999987---5899999999----------------999999988888
Q ss_pred CCCCHHHHHHHHHHCCCHHHCC
Q ss_conf 7999689999983119967683
Q gi|255764488|r 250 NGAIPQVAIEYGRKVLPLSERP 271 (290)
Q Consensus 250 ~g~~P~~~~e~l~~~lp~~~r~ 271 (290)
--.+-|..+||..+|++|=+-|
T Consensus 196 ~~~pfr~~reR~~~FlNPW~Dp 217 (356)
T TIGR02615 196 LSAPFRIKRERILSFLNPWEDP 217 (356)
T ss_pred HHCCCCCCCCEEEEECCCCCCC
T ss_conf 6323000120021003867263
No 74
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=25.89 E-value=42 Score=13.51 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=15.7
Q ss_pred HHCHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 3062027999999999996378989999999
Q gi|255764488|r 117 LENNELTTFICDYMRMIIVGNARSYEIENLM 147 (290)
Q Consensus 117 ~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L 147 (290)
.-+.-..++++.+++++-+|..++++|...+
T Consensus 188 i~NRl~~~~~~ea~~lv~eGva~~~dID~~~ 218 (289)
T PRK09260 188 VTSRISALVGNEAMYMLQEGVATAEDIDKAL 218 (289)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 9999899999999999981999999999997
No 75
>cd05055 PTKc_PDGFR Catalytic Domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=25.79 E-value=43 Score=13.50 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHCC--CHHHCCCHHHHHHHHHHC
Q ss_conf 9999999999957999689999983119--967683889999999702
Q gi|255764488|r 238 YIIVKKALIAYMNGAIPQVAIEYGRKVL--PLSERPSIEIVAQEVLQY 283 (290)
Q Consensus 238 ~~~i~egi~~i~~g~~P~~~~e~l~~~l--p~~~r~~~~e~~~~~~~~ 283 (290)
.+.+.+|...-.-...|.-+.+-+..-+ .|++||+++|.-+.+.+.
T Consensus 254 ~~~v~~g~r~~~p~~~p~~l~~Li~~Cw~~dP~~RPs~~eI~~~Le~~ 301 (302)
T cd05055 254 YKLIKEGYRMAQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQLIGKQ 301 (302)
T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHCC
T ss_conf 999966887899876739999999998287965793999999999710
No 76
>cd05075 PTKc_Axl Catalytic Domain of the Protein Tyrosine Kinase, Axl. Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor
Probab=25.33 E-value=43 Score=13.45 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=21.1
Q ss_pred HHHHHHHHHCC--CHHHCCCHHHHHHHHHHC
Q ss_conf 89999983119--967683889999999702
Q gi|255764488|r 255 QVAIEYGRKVL--PLSERPSIEIVAQEVLQY 283 (290)
Q Consensus 255 ~~~~e~l~~~l--p~~~r~~~~e~~~~~~~~ 283 (290)
..+.+-+.+-+ .|++||+++|..+++.+.
T Consensus 241 ~~l~~Li~~C~~~~P~~RPt~~ei~~~Le~i 271 (272)
T cd05075 241 DGLYSLMSSCWLLNPKDRPSFETLRCELEKA 271 (272)
T ss_pred HHHHHHHHHHHCCCHHHCCCHHHHHHHHHHH
T ss_conf 9999999998377965792999999999975
No 77
>cd06605 PKc_MAPKK Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residu
Probab=25.22 E-value=26 Score=14.89 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=16.5
Q ss_pred HHHHHHHHCC--CHHHCCCHHHHHH
Q ss_conf 9999983119--9676838899999
Q gi|255764488|r 256 VAIEYGRKVL--PLSERPSIEIVAQ 278 (290)
Q Consensus 256 ~~~e~l~~~l--p~~~r~~~~e~~~ 278 (290)
-+.+.+++-| .|++||+++|+-+
T Consensus 232 ~~~~li~~~L~~dP~~Rps~~eil~ 256 (265)
T cd06605 232 DFQDFVNLCLIKDPRERPSYKELLE 256 (265)
T ss_pred HHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 9999999985789667909999962
No 78
>KOG4249 consensus
Probab=24.67 E-value=45 Score=13.37 Aligned_cols=84 Identities=14% Similarity=0.045 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHCCCHHHCCCHHHHHH
Q ss_conf 66689999999999999999999999999999999999999999999995-79996899999831199676838899999
Q gi|255764488|r 200 TAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYIIVKKALIAYM-NGAIPQVAIEYGRKVLPLSERPSIEIVAQ 278 (290)
Q Consensus 200 ~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~i~egi~~i~-~g~~P~~~~e~l~~~lp~~~r~~~~e~~~ 278 (290)
.+++.-+.++..|+.+++.+..-..-.+-.-.--........-+++..|+ +--||.-.+=.+.+||-..+=|+..|..+
T Consensus 176 ~~~~~~laG~g~gili~~~i~~~~~~~l~~f~ils~~hly~~yq~~r~i~l~TLN~~R~~live~~l~~g~VPsp~e~n~ 255 (408)
T KOG4249 176 QSTASNLAGLGFGILILGRIGACKPLPLVTFGILSTVHLYSNYQSLRHIQLNTLNPDRLRLIVESYLKTGQVPSPAEVNE 255 (408)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 99999988767888860766677775113001567999999887654032012688889999999886277898266413
Q ss_pred HHHHC
Q ss_conf 99702
Q gi|255764488|r 279 EVLQY 283 (290)
Q Consensus 279 ~~~~~ 283 (290)
|.+-.
T Consensus 256 ~E~i~ 260 (408)
T KOG4249 256 EEPIF 260 (408)
T ss_pred HCCCC
T ss_conf 23554
No 79
>cd05060 PTKc_Syk_like Catalytic Domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi
Probab=24.47 E-value=45 Score=13.35 Aligned_cols=32 Identities=13% Similarity=0.092 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHCC--CHHHCCCHHHHHHHHHHCC
Q ss_conf 9689999983119--9676838899999997024
Q gi|255764488|r 253 IPQVAIEYGRKVL--PLSERPSIEIVAQEVLQYN 284 (290)
Q Consensus 253 ~P~~~~e~l~~~l--p~~~r~~~~e~~~~~~~~~ 284 (290)
-|..+.+-++.-+ .|++||+++|..+.+++..
T Consensus 223 ~~~~l~~li~~c~~~~P~~RPs~~ei~~~L~~~p 256 (257)
T cd05060 223 CPQEIYSIMLSCWKYRPEDRPTFSELESTFRRDP 256 (257)
T ss_pred CHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHCCC
T ss_conf 3599999999983889668919999999975489
No 80
>cd05049 PTKc_Trk Catalytic Domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases. Protein Tyrosine Kinase (PTK) family; Tropomyosin related kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt
Probab=24.38 E-value=45 Score=13.33 Aligned_cols=29 Identities=10% Similarity=0.108 Sum_probs=20.9
Q ss_pred HHHHHHHHHHCC--CHHHCCCHHHHHHHHHH
Q ss_conf 689999983119--96768388999999970
Q gi|255764488|r 254 PQVAIEYGRKVL--PLSERPSIEIVAQEVLQ 282 (290)
Q Consensus 254 P~~~~e~l~~~l--p~~~r~~~~e~~~~~~~ 282 (290)
|.-+.+.++.-+ .|++||+++|+-+.+++
T Consensus 250 ~~~l~~li~~c~~~dP~~RPt~~ei~~~L~~ 280 (280)
T cd05049 250 PSEVYDIMLGCWKRDPQQRINIKDIHERLQK 280 (280)
T ss_pred HHHHHHHHHHHCCCCHHHCCCHHHHHHHHCC
T ss_conf 3999999999828797689199999998569
No 81
>TIGR00393 kpsF sugar isomerase, KpsF/GutQ family; InterPro: IPR004800 This is a family of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. The group includes GutQ, a protein of the glucitol operon and KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of Escherichia coli.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process.
Probab=24.37 E-value=34 Score=14.12 Aligned_cols=17 Identities=29% Similarity=0.682 Sum_probs=10.3
Q ss_pred HHCCCCHHHHHHHHHHH
Q ss_conf 97099811242489999
Q gi|255764488|r 19 YAMGGNPYILIQPFEIV 35 (290)
Q Consensus 19 ~~~GG~l~~f~~~~sll 35 (290)
+.+.|++++|+||.+.+
T Consensus 22 ~aSTGtPSfFlHPtEA~ 38 (272)
T TIGR00393 22 FASTGTPSFFLHPTEAL 38 (272)
T ss_pred HHCCCCCCCCCCCHHHC
T ss_conf 41247755324643450
No 82
>PRK09117 consensus
Probab=24.23 E-value=46 Score=13.32 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 279999999999963789899999
Q gi|255764488|r 122 LTTFICDYMRMIIVGNARSYEIEN 145 (290)
Q Consensus 122 ~~~fl~~~l~~~v~g~~~~~~i~~ 145 (290)
..++++.+++++-+|..++++++.
T Consensus 192 ~~a~~~ea~~lv~eGva~~~~ID~ 215 (282)
T PRK09117 192 LCPMINEAIFVLGEGLATAEDIDE 215 (282)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 999999999999849999999998
No 83
>cd05100 PTKc_FGFR3 Catalytic Domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=24.12 E-value=46 Score=13.30 Aligned_cols=68 Identities=12% Similarity=0.172 Sum_probs=39.6
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC--CHHHCCCHHHHHHHHHHCC
Q ss_conf 9999999999---999999999999999999999999999957999689999983119--9676838899999997024
Q gi|255764488|r 211 LGIILSYSLC---NPLTSQIKSTRLKQHRLYIIVKKALIAYMNGAIPQVAIEYGRKVL--PLSERPSIEIVAQEVLQYN 284 (290)
Q Consensus 211 YGv~lAn~i~---~Pia~kl~~~~~~e~~~~~~i~egi~~i~~g~~P~~~~e~l~~~l--p~~~r~~~~e~~~~~~~~~ 284 (290)
||+++--++- .|..+. ..++. .+.+.+|...-.-..-|.-+.+.++.-. .|++||+|.|.-+++.+.-
T Consensus 222 ~Gvvl~El~t~G~~Py~~~----~~~~i--~~~~~~g~r~~~P~~c~~~l~~lm~~Cw~~~P~~RPtf~eiv~~L~~il 294 (334)
T cd05100 222 FGVLLWEIFTLGGSPYPGI----PVEEL--FKLLKEGHRMDKPANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRVL 294 (334)
T ss_pred HHHHHHHHHHCCCCCCCCC----CHHHH--HHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHH
T ss_conf 5767869971899998988----99999--9999769989999888899999999982788546909899999999998
No 84
>pfam11239 DUF3040 Protein of unknown function (DUF3040). Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=23.77 E-value=46 Score=13.26 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHCC
Q ss_conf 88889999999999996148
Q gi|255764488|r 173 PAIGIVGAILGIIKAMGNLS 192 (290)
Q Consensus 173 PafGmiGTviGLI~ml~~l~ 192 (290)
...|.++-++|++.+...+.
T Consensus 42 ~~~~~~~~v~Gl~~lv~Gv~ 61 (82)
T pfam11239 42 IVLGVLAAVLGVALLVAGVV 61 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999
No 85
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=23.75 E-value=46 Score=13.26 Aligned_cols=58 Identities=17% Similarity=0.135 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 999999999999974104744764207421145553235530620279999999999963789899999999
Q gi|255764488|r 77 DVLKLLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMD 148 (290)
Q Consensus 77 eli~~l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~ 148 (290)
++++.+.++.....|..+..- .-|-+.-+....+|+..+++++-.|..++++|...+.
T Consensus 159 e~~~~~~~~~~~~GK~pVv~k--------------d~pGFi~NRi~~~~~~EA~~lv~eGvas~edID~a~~ 216 (311)
T PRK08269 159 AVVDRLAALLERIGKVPVVCG--------------PSPGYIVPRIQALAMNEAARMVEEGVASAEDIDTAIR 216 (311)
T ss_pred HHHHHHHHHHHHCCCEEEEEC--------------CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 999999999997398069967--------------8775079998899999999999829999999999998
No 86
>PRK09765 2-O-a-mannosyl-D-glycerate specific PTS transporten components IIABC; Provisional
Probab=23.65 E-value=47 Score=13.25 Aligned_cols=98 Identities=17% Similarity=0.119 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-------HHHHH
Q ss_conf 99999999988888999999999999614897899986668999999----99999999999999999-------99999
Q gi|255764488|r 163 HAISHMGESLPAIGIVGAILGIIKAMGNLSQSPKILGTAIGVSLTGT----LLGIILSYSLCNPLTSQ-------IKSTR 231 (290)
Q Consensus 163 ~~~~~~a~~aPafGmiGTviGLI~ml~~l~d~p~~lG~~iA~ALitT----lYGv~lAn~i~~Pia~k-------l~~~~ 231 (290)
+.+..|++...- ++|.++|.-.. -.|++|-.+-.-.-+.+++++ -++++.+-...-|++-- =+-..
T Consensus 446 ~~L~~m~~~~~i--lLG~ilG~M~a-~DmGGPvNKaAy~F~~~~~~~g~~~p~~~~~a~~mvPPlgi~lat~l~k~~ft~ 522 (638)
T PRK09765 446 AWLNGLSGSNAL--LLGAILGFMCS-FDLGGPVNKAAYAFCLGAMANGVYGPYAIFASVKMVSAFTVTASTMLAPRLFKE 522 (638)
T ss_pred HHHHHCCCCCHH--HHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCH
T ss_conf 999864441299--99999988885-116883288999999999862783689998876068848999999971304999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999999999999999579996899999831
Q gi|255764488|r 232 LKQHRLYIIVKKALIAYMNGAIPQVAIEYGRK 263 (290)
Q Consensus 232 ~~e~~~~~~i~egi~~i~~g~~P~~~~e~l~~ 263 (290)
+++..-+....-|+..|-+|.-|....+-+|-
T Consensus 523 ~Er~~g~~~~~mG~~~ITEGAIPFAa~DP~rv 554 (638)
T PRK09765 523 FEIETGKSTWLLGLAGITEGAIPMAIEDPLRV 554 (638)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHH
T ss_conf 99998799999888870867047666084788
No 87
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=23.65 E-value=47 Score=13.25 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=22.6
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 355306202799999999999637898999999999
Q gi|255764488|r 114 PTVLENNELTTFICDYMRMIIVGNARSYEIENLMDE 149 (290)
Q Consensus 114 ~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ 149 (290)
|.+.-+....++++.+++++-.|..++++|+..+..
T Consensus 182 pGFi~NRl~~~~~~EA~~lv~eGvas~edID~~~~~ 217 (310)
T PRK06130 182 PGFIANRIQHALAREAISLLEKGVASAEDIDEVVKW 217 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 880188889999999999998399999999998675
No 88
>cd05052 PTKc_Abl Catalytic Domain of the Protein Tyrosine Kinase, Abelson kinase. Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays
Probab=23.18 E-value=48 Score=13.19 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=22.0
Q ss_pred HHHHHHHHHHCC--CHHHCCCHHHHHHHHHHC
Q ss_conf 689999983119--967683889999999702
Q gi|255764488|r 254 PQVAIEYGRKVL--PLSERPSIEIVAQEVLQY 283 (290)
Q Consensus 254 P~~~~e~l~~~l--p~~~r~~~~e~~~~~~~~ 283 (290)
|.-+.+-+..-+ .|++||+++|.-+++.+.
T Consensus 231 ~~~l~~li~~c~~~dP~~RPs~~ei~~~L~~~ 262 (263)
T cd05052 231 PPKVYELMRACWQWNPSDRPSFAEIHQAFETM 262 (263)
T ss_pred CHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHH
T ss_conf 59999999998188966792999999999842
No 89
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=23.06 E-value=48 Score=13.17 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 2799999999999637898999999
Q gi|255764488|r 122 LTTFICDYMRMIIVGNARSYEIENL 146 (290)
Q Consensus 122 ~~~fl~~~l~~~v~g~~~~~~i~~~ 146 (290)
..++++.+++++-.|..++++++..
T Consensus 193 ~~a~~~ea~~lv~eGva~~~dID~~ 217 (282)
T PRK05808 193 LIPMINEAIFVLAEGVATAEDIDEG 217 (282)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 9999999999998399999999998
No 90
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=22.95 E-value=48 Score=13.16 Aligned_cols=18 Identities=39% Similarity=0.396 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHHHHHH
Q ss_conf 968999999999999999
Q gi|255764488|r 1 MSTIIGLFITILCIIGGF 18 (290)
Q Consensus 1 l~tIiGlv~~~~~I~~g~ 18 (290)
|+|+||=+++|+.|++-+
T Consensus 1 m~~fIgqLI~Faii~f~~ 18 (445)
T PRK13428 1 MSTFIGQLIGFAVIVFLV 18 (445)
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 913999999999999999
No 91
>pfam11166 DUF2951 Protein of unknown function (DUF2951). This family of proteins has no known function. It has a highly conserved sequence.
Probab=22.65 E-value=49 Score=13.12 Aligned_cols=77 Identities=25% Similarity=0.399 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45553235530620279999999999963789899999999999999999621289999999998888899999999999
Q gi|255764488|r 108 TIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLKPYHAISHMGESLPAIGIVGAILGIIKA 187 (290)
Q Consensus 108 ~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~~~~~~~~~a~~aPafGmiGTviGLI~m 187 (290)
.+|.++-.+-++.+..+-+-+-|..-.|.-..+ .|++. +..++..+-++.+--+ -+|++||+.|
T Consensus 21 ~~f~sLd~Ik~gq~~Qe~vn~Kmd~tld~i~Re--------reld~--~nk~en~KnirdiKmw--iLGlvgTI~~---- 84 (97)
T pfam11166 21 TIFESLDEIKDGQHTQELVNQKMDLTLDSINRE--------RELDK--ENKEENRKNIKDVKMW--ILGLVGTILS---- 84 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH--HHHHHHHHHHHHHHHH--HHHHHHHHHH----
T ss_conf 999989999860656999999997029999888--------88778--7377767429999999--9999999999----
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 96148978999866689999999999
Q gi|255764488|r 188 MGNLSQSPKILGTAIGVSLTGTLLGI 213 (290)
Q Consensus 188 l~~l~d~p~~lG~~iA~ALitTlYGv 213 (290)
++-.|++-|++|+
T Consensus 85 -------------sliiA~LRtifGI 97 (97)
T pfam11166 85 -------------SLIIALLRTIFGI 97 (97)
T ss_pred -------------HHHHHHHHHHHCC
T ss_conf -------------9999999998079
No 92
>PRK05922 type III secretion system ATPase; Validated
Probab=21.88 E-value=51 Score=13.02 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH-----HHHHHHHCC--CHHHCCCHHHHHHHHHHC
Q ss_conf 9999999999999999999999999957999689-----999983119--967683889999999702
Q gi|255764488|r 223 LTSQIKSTRLKQHRLYIIVKKALIAYMNGAIPQV-----AIEYGRKVL--PLSERPSIEIVAQEVLQY 283 (290)
Q Consensus 223 ia~kl~~~~~~e~~~~~~i~egi~~i~~g~~P~~-----~~e~l~~~l--p~~~r~~~~e~~~~~~~~ 283 (290)
+|++++..-..-.....+|. +-+++.|.+|.+ ..+.++.|| |.+++.+++|--+.+.+.
T Consensus 365 ~a~~~r~~la~y~e~~dli~--~G~y~~g~d~~~D~ai~~~~~i~~fL~Q~~~e~~~~~~t~~~l~~l 430 (434)
T PRK05922 365 AAEELRSLLKAYHEALDIIQ--LGAYTPGQDAHLDRAVKLLPSIKQFLSQPLSSYCALHNTLKQLEAL 430 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999999999999998--5297678876699999999999997189999973999999999998
No 93
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=21.64 E-value=51 Score=12.99 Aligned_cols=59 Identities=8% Similarity=-0.005 Sum_probs=44.6
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 70998112424899999999999999985898999999999999635788996668999
Q gi|255764488|r 20 AMGGNPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDV 78 (290)
Q Consensus 20 ~~GG~l~~f~~~~sllIV~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~el 78 (290)
-.|+.+...|-..++-+|+|++++-..+..-..|+.++++.+-..+.+-+.|-...++.
T Consensus 84 Klg~rll~ifli~sv~~vlGfIl~yp~~ksf~gd~Wka~gmi~gSytGGSaNmAAmqaa 142 (384)
T COG5505 84 KLGRRLLFIFLISSVGTVLGFILAYPLLKSFIGDLWKAGGMISGSYTGGSANMAAMQAA 142 (384)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEEEEEECCCCHHHHHHHH
T ss_conf 63614657899999999999998889774540017765131045321773119999865
No 94
>pfam08427 DUF1741 Domain of unknown function (DUF1741). This is a eukaryotic domain of unknown function.
Probab=21.54 E-value=49 Score=13.10 Aligned_cols=20 Identities=15% Similarity=0.067 Sum_probs=11.8
Q ss_pred HCCHHHHHHHHHHHHHHHCC
Q ss_conf 58989999999999996357
Q gi|255764488|r 48 ANPLKVIKDSGVSLLEIFGY 67 (290)
Q Consensus 48 ~~p~~~i~~~~~~l~~~f~~ 67 (290)
.|.|+++.+++-.+-++...
T Consensus 56 ~YhW~eLW~aLlsL~rFl~t 75 (237)
T pfam08427 56 EYHWSELWSALLSLLRFLTT 75 (237)
T ss_pred ECCHHHHHHHHHHHHHHHHH
T ss_conf 03199999999999999998
No 95
>cd05097 PTKc_DDR_like Catalytic Domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Discoidin domain receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including
Probab=21.35 E-value=52 Score=12.96 Aligned_cols=29 Identities=10% Similarity=0.283 Sum_probs=21.4
Q ss_pred HHHHHHHHHHCC--CHHHCCCHHHHHHHHHH
Q ss_conf 689999983119--96768388999999970
Q gi|255764488|r 254 PQVAIEYGRKVL--PLSERPSIEIVAQEVLQ 282 (290)
Q Consensus 254 P~~~~e~l~~~l--p~~~r~~~~e~~~~~~~ 282 (290)
|.-+.+.+..-+ .|++||+++|..+.+++
T Consensus 265 p~~l~~li~~Cw~~dP~~RPtf~eI~~~L~e 295 (295)
T cd05097 265 PSPVFKLMMRCWSRDIKDRPTFNKIHHFLRE 295 (295)
T ss_pred CHHHHHHHHHHHCCCHHHCCCHHHHHHHHCC
T ss_conf 7999999999827896579098999999649
No 96
>pfam05818 TraT Enterobacterial TraT complement resistance protein. The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between an Escherichia coli and its surroundings.
Probab=21.22 E-value=52 Score=12.94 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999961489789998666899999999999999999
Q gi|255764488|r 176 GIVGAILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLC 220 (290)
Q Consensus 176 GmiGTviGLI~ml~~l~d~p~~lG~~iA~ALitTlYGv~lAn~i~ 220 (290)
|..|+.+|-...-.|=+..-..+|.+++.||++++-|.+.-...|
T Consensus 90 ~~~ga~~g~~~ga~~~~s~~~~~g~Glag~lig~~ada~veD~~Y 134 (215)
T pfam05818 90 AAAGAALGAAVGAYNSGGAGAALGVGLAGGLVGTAADALVEDVNY 134 (215)
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_conf 666655412201134688512799999999999876445000038
No 97
>COG4214 XylH ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]
Probab=20.91 E-value=53 Score=12.90 Aligned_cols=73 Identities=23% Similarity=0.331 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHH-----HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8888999999999999614897899-----9866689999---------9999999999999999999999999999999
Q gi|255764488|r 173 PAIGIVGAILGIIKAMGNLSQSPKI-----LGTAIGVSLT---------GTLLGIILSYSLCNPLTSQIKSTRLKQHRLY 238 (290)
Q Consensus 173 PafGmiGTviGLI~ml~~l~d~p~~-----lG~~iA~ALi---------tTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~ 238 (290)
--+|.+.++-|+|..=--=+..|++ | -.||.+++ +|.+|+++.-++..-+.+-+-.. .-...++
T Consensus 295 ~~mGvl~AiAgli~taRL~aatp~AG~g~EL-daIAA~fIGGtSlaGGvGtv~GAviGalIM~sl~nGMsll-gv~~~~Q 372 (394)
T COG4214 295 VIMGVLAAIAGLILTARLNAATPSAGTGFEL-DAIAACFIGGTSLAGGVGTVAGAVIGALIMGSLNNGMSLL-GVDTDWQ 372 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEE-CCCCCHH
T ss_conf 9978999999999999860578677764157-7889987466312477426999999999999884585784-5895399
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|255764488|r 239 IIVKKALIA 247 (290)
Q Consensus 239 ~~i~egi~~ 247 (290)
+++.-.++.
T Consensus 373 ~iVkG~VLl 381 (394)
T COG4214 373 QIVKGAVLL 381 (394)
T ss_pred HHHHHHHHH
T ss_conf 999989999
No 98
>cd05085 PTKc_Fer Catalytic Domain of the Protein Tyrosine Kinase, Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c
Probab=20.91 E-value=53 Score=12.90 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHCC--CHHHCCCHHHHHHHHH
Q ss_conf 9689999983119--9676838899999997
Q gi|255764488|r 253 IPQVAIEYGRKVL--PLSERPSIEIVAQEVL 281 (290)
Q Consensus 253 ~P~~~~e~l~~~l--p~~~r~~~~e~~~~~~ 281 (290)
.|.-+.+.+..-+ .|++||+++|+.+++.
T Consensus 219 ~~~~l~~li~~c~~~dP~~RPs~~ei~~~L~ 249 (250)
T cd05085 219 CPDDVYKVMQRCWDYKPENRPKFSELQKELA 249 (250)
T ss_pred CCHHHHHHHHHHHCCCHHHCCCHHHHHHHCC
T ss_conf 6099999999980889667929999999708
No 99
>PRK10263 DNA translocase FtsK; Provisional
Probab=20.87 E-value=53 Score=12.89 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=15.2
Q ss_pred HHCCCCHHHHHH--HHHHHHHHHHHHHHH
Q ss_conf 970998112424--899999999999999
Q gi|255764488|r 19 YAMGGNPYILIQ--PFEIVIVAGAGLGGF 45 (290)
Q Consensus 19 ~~~GG~l~~f~~--~~sllIV~GGtlaA~ 45 (290)
..+||-++.+|. .-..+=++|+||.-.
T Consensus 140 FaSGGVIGsllSsa~lP~lN~lGaTL~LL 168 (1355)
T PRK10263 140 FASGGVIGSLLSTTLQPLLHSSGGTIALL 168 (1355)
T ss_pred CCCCCEEHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 25778700877776887663063899999
No 100
>cd05093 PTKc_TrkB Catalytic Domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B. Protein Tyrosine Kinase (PTK) family; Tropomyosin related kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly
Probab=20.72 E-value=53 Score=12.87 Aligned_cols=35 Identities=9% Similarity=0.028 Sum_probs=25.6
Q ss_pred HHHHHHHHHHCC--CHHHCCCHHHHHHHHHHCCCCCC
Q ss_conf 689999983119--96768388999999970243456
Q gi|255764488|r 254 PQVAIEYGRKVL--PLSERPSIEIVAQEVLQYNHNKK 288 (290)
Q Consensus 254 P~~~~e~l~~~l--p~~~r~~~~e~~~~~~~~~~~~~ 288 (290)
|.-+.+.++.-+ .|++||+++|.-+.+++..++-+
T Consensus 248 ~~~~~~li~~c~~~dP~~Rpt~~ei~~~L~~l~~~~p 284 (288)
T cd05093 248 PKEVYDLMLGCWQREPHMRLNIKEIHSLLQNLAKASP 284 (288)
T ss_pred CHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 1999999999858796579099999999841865288
No 101
>COG2427 Uncharacterized conserved protein [Function unknown]
Probab=20.33 E-value=54 Score=12.82 Aligned_cols=103 Identities=16% Similarity=0.227 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHH
Q ss_conf 99999999999999741047447642074211455532355306202799999999999637-89899999999999999
Q gi|255764488|r 76 CDVLKLLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGN-ARSYEIENLMDEEIDII 154 (290)
Q Consensus 76 ~eli~~l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~-~~~~~i~~~L~~ei~~~ 154 (290)
.+.+..+.++....++.|.+.--....+ ...+.++....+......+++...+.+...-+ .+.++.....+.-.
T Consensus 25 ~~~i~~l~~l~~~l~~~giLD~l~~~~~--~~~i~~~~~~~l~~e~~~~ll~~~~~~~~~l~~~~~e~~~~~~~~~~--- 99 (148)
T COG2427 25 KDAIKELMDLLKLLKESGLLDALLGLRA--KADIAKKLKDELAKELIENLLNNMLIMLGLLSLIDSERLSKLVENLI--- 99 (148)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH---
T ss_conf 9999999999988624352988762110--88999999999857999999987999999998604688999999999---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 9996212899999999988888999999999999614897899
Q gi|255764488|r 155 LYEKLKPYHAISHMGESLPAIGIVGAILGIIKAMGNLSQSPKI 197 (290)
Q Consensus 155 ~~~~~~~~~~~~~~a~~aPafGmiGTviGLI~ml~~l~d~p~~ 197 (290)
.+.+ +..-..-+|.+|+. ..|+.|.| |++
T Consensus 100 -----~a~~-~~~~~~~~~~vgl~-------~Llk~LkD-Pdv 128 (148)
T COG2427 100 -----KAIE-AVKAEKNAEPVGLL-------GLLKALKD-PDV 128 (148)
T ss_pred -----HHHH-HHHHCCCCCCCCHH-------HHHHHHCC-HHH
T ss_conf -----9999-98721246886699-------99988388-989
No 102
>cd05074 PTKc_Tyro3 Catalytic Domain of the Protein Tyrosine Kinase, Tyro3. Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac
Probab=20.30 E-value=55 Score=12.82 Aligned_cols=29 Identities=14% Similarity=0.061 Sum_probs=21.1
Q ss_pred HHHHHHHHHHCC--CHHHCCCHHHHHHHHHH
Q ss_conf 689999983119--96768388999999970
Q gi|255764488|r 254 PQVAIEYGRKVL--PLSERPSIEIVAQEVLQ 282 (290)
Q Consensus 254 P~~~~e~l~~~l--p~~~r~~~~e~~~~~~~ 282 (290)
|.-+.+.+.+-+ .|++||+++|..++++.
T Consensus 241 ~~~l~~li~~C~~~dP~~RPs~~~i~~~Le~ 271 (273)
T cd05074 241 LEDVYELMCQCWSPEPKCRPSFQHLRDQLEL 271 (273)
T ss_pred HHHHHHHHHHHCCCCHHHCCCHHHHHHHHHH
T ss_conf 4999999999818796689199999999984
No 103
>TIGR00851 mtlA PTS system, mannitol-specific IIC component; InterPro: IPR004718 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several putative PTS permeases of unknown specificities.The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This group is specific for the IIC domain of the mannitol PTS transporters.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane.
Probab=20.25 E-value=44 Score=13.39 Aligned_cols=14 Identities=36% Similarity=0.895 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86668999999999999999999
Q gi|255764488|r 199 GTAIGVSLTGTLLGIILSYSLCN 221 (290)
Q Consensus 199 G~~iA~ALitTlYGv~lAn~i~~ 221 (290)
|||| |+++||++|+
T Consensus 216 GPGl---------GvllAY~~FG 229 (341)
T TIGR00851 216 GPGL---------GVLLAYMLFG 229 (341)
T ss_pred CCCH---------HHHHHHHHHC
T ss_conf 4848---------9999999836
No 104
>pfam05844 YopD YopD protein. This family consists of several bacterial YopD like proteins. Virulent Yersinia species harbour a common plasmid that encodes essential virulence determinants (Yersinia outer proteins [Yops]), which are regulated by the extracellular stimuli Ca2+ and temperature. YopD is thought to be a possible transmembrane protein and contains an amphipathic alpha-helix in its carboxy terminus.
Probab=20.17 E-value=55 Score=12.80 Aligned_cols=75 Identities=15% Similarity=0.111 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 66689999999999999974104744764207421145553235530620279999999999963789899999999999
Q gi|255764488|r 72 QDTYCDVLKLLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEI 151 (290)
Q Consensus 72 ~~~~~eli~~l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~ei 151 (290)
.+...+++.+++++++++|..|++--|-+.+ ..|+ ..
T Consensus 70 l~~sl~mmsLLfq~ar~aRE~g~lQRdienk-----------------------------a~I~--------------aq 106 (296)
T pfam05844 70 LDSSLDMMSLLFQLARLAREEGLLQRDIENK-----------------------------AVIS--------------AQ 106 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHH--------------HH
T ss_conf 8878999999999999999876899998998-----------------------------8789--------------89
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999962128999999999888889999999999996
Q gi|255764488|r 152 DIILYEKLKPYHAISHMGESLPAIGIVGAILGIIKAMG 189 (290)
Q Consensus 152 ~~~~~~~~~~~~~~~~~a~~aPafGmiGTviGLI~ml~ 189 (290)
....++...+++..-.||-.+--+-..-+|+|-+..++
T Consensus 107 ksQvdEmr~gAklMIAMAVVSGVmAg~SaviG~fs~~K 144 (296)
T pfam05844 107 KAQVDEMRHGAKLMIAMAVVSGVMAGVSAVMGGFSSAK 144 (296)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98999985528999999999989999999998765532
No 105
>cd05069 PTKc_Yes Catalytic Domain of the Protein Tyrosine Kinase, Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an
Probab=20.02 E-value=55 Score=12.78 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHCC--CHHHCCCHHHHHHHHHHC
Q ss_conf 9689999983119--967683889999999702
Q gi|255764488|r 253 IPQVAIEYGRKVL--PLSERPSIEIVAQEVLQY 283 (290)
Q Consensus 253 ~P~~~~e~l~~~l--p~~~r~~~~e~~~~~~~~ 283 (290)
-|..+.+.+..-+ .|++||++++.-+.+.++
T Consensus 228 ~p~~~~~li~~c~~~~P~~RPt~~~I~~~Le~~ 260 (260)
T cd05069 228 CPESLHELMKLCWKKDPDERPTFEYIQSFLEDY 260 (260)
T ss_pred CCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHCC
T ss_conf 789999999998088965791999999997287
Done!