Query gi|255764488|ref|YP_003065099.2| flagellar motor protein MotA [Candidatus Liberibacter asiaticus str. psy62] Match_columns 290 No_of_seqs 138 out of 898 Neff 7.0 Searched_HMMs 33803 Date Wed Jun 1 14:39:05 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764488.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3kv0_A HET-C2; GLTP, glycolip 45.7 18 0.00052 15.5 4.1 102 24-150 38-139 (209) 2 >3cbl_A C-FES, proto-oncogene 44.0 19 0.00055 15.4 2.7 34 254-287 147-182 (183) 3 >2r9r_B Paddle chimera voltage 39.3 22 0.00065 14.9 4.2 86 185-271 64-152 (194) 4 >1mp8_A Focal adhesion kinase 35.8 18 0.00054 15.4 1.6 38 252-289 144-183 (184) 5 >2gs4_A Protein YCIF; stress p 32.8 28 0.00082 14.3 9.0 96 129-227 27-127 (166) 6 >2ivs_A Proto-oncogene tyrosin 28.1 33 0.00099 13.8 3.0 38 251-288 168-207 (207) 7 >1mtz_A Proline iminopeptidase 25.1 35 0.001 13.6 1.5 18 259-276 7-24 (50) 8 >2d0t_A Indoleamine 2,3-dioxyg 24.5 31 0.00093 13.9 1.2 33 242-274 14-49 (54) 9 >2dpy_A FLII, flagellum-specif 23.6 25 0.00073 14.6 0.5 14 103-116 37-50 (78) 10 >2obl_A ESCN; ATPase, hydrolas 21.4 32 0.00094 13.9 0.7 22 103-130 37-58 (76) 11 >1yvj_A Janus kinase 3, tyrosi 21.2 45 0.0013 12.9 3.1 44 243-286 150-195 (197) 12 >1lkv_X Flagellar motor switch 21.1 45 0.0013 12.9 2.7 26 243-269 14-39 (65) No 1 >>3kv0_A HET-C2; GLTP, glycolipid transfer protein, transport protein; HET: MLY; 1.90A {Podospora anserina} (A:) Probab=45.72 E-value=18 Score=15.54 Aligned_cols=102 Identities=10% Similarity=0.067 Sum_probs=52.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 81124248999999999999999858989999999999996357889966689999999999999974104744764207 Q gi|255764488|r 24 NPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLKLLYILMYNLKKGSRNETENHIDD 103 (290) Q Consensus 24 ~l~~f~~~~sllIV~GGtlaA~li~~p~~~i~~~~~~l~~~f~~~~~~~~~~~eli~~l~el~~~~Rk~GllaLE~~ie~ 103 (290) +...|++...-++-+-+.+|.+..++=-+|+..-...++..+...+...+...++++ .+++. T Consensus 38 ~t~~fL~a~~~i~~~~~~lG~~~F~~v~~Di~~nI~kl~~~~~~~~~~~~TL~~li~------------------~E~~~ 99 (209) T 3kv0_A 38 STAEFLEAAESLTTMFDVLGSIAFSPVXTDMLGNVEXIRXRMLAAPLESQNIQDLVR------------------NELXT 99 (209) T ss_dssp BHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHSGGGCSBHHHHHH------------------HHTCC T ss_pred CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH------------------HHHHC T ss_conf 749999999999999998086341115988864599999888608278899999999------------------87441 Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 42114555323553062027999999999996378989999999999 Q gi|255764488|r 104 PYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEE 150 (290) Q Consensus 104 p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~g~~~~~~i~~~L~~e 150 (290) ..+|. -..++.-+....|++..++-++++..+ ++.....- T Consensus 100 ~~~S~----t~~LLwL~RaL~Fi~~fl~~l~~~~~~---~~~~~~~A 139 (209) T 3kv0_A 100 XSHTA----TEGLLWLVRGLEFTCIALSXNIGSTEE---LADSFRGS 139 (209) T ss_dssp -CCHH----HHHHHHHHHHHHHHHHHHHHHHTSCCC---HHHHHHHH T ss_pred CCCHH----HHHHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHHHH T ss_conf 77748----799999999999999999986178457---99999999 No 2 >>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline sarcoma virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* (A:195-377) Probab=43.96 E-value=19 Score=15.38 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=20.9 Q ss_pred HHHHHHHHHHCC--CHHHCCCHHHHHHHHHHCCCCC Q ss_conf 689999983119--9676838899999997024345 Q gi|255764488|r 254 PQVAIEYGRKVL--PLSERPSIEIVAQEVLQYNHNK 287 (290) Q Consensus 254 P~~~~e~l~~~l--p~~~r~~~~e~~~~~~~~~~~~ 287 (290) |.-+.+.++.-+ .|++||+++|.-+.+++....+ T Consensus 147 ~~~l~~Li~~cl~~dP~~RPs~~~i~~~l~~i~~~~ 182 (183) T 3cbl_A 147 PDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKRH 182 (183) T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC T ss_pred CHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHC T ss_conf 399999999975889668929999999999999854 No 3 >>2r9r_B Paddle chimera voltage gated potassium channel KV1.2-KV2.1; voltage sensor, voltage dependent, ION channel, shaker, membrane protein; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 2a79_B* (B:321-514) Probab=39.34 E-value=22 Score=14.92 Aligned_cols=86 Identities=8% Similarity=0.021 Sum_probs=59.7 Q ss_pred HHHHHHCC--C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 99996148--9-78999866689999999999999999999999999999999999999999999995799968999998 Q gi|255764488|r 185 IKAMGNLS--Q-SPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYIIVKKALIAYMNGAIPQVAIEYG 261 (290) Q Consensus 185 I~ml~~l~--d-~p~~lG~~iA~ALitTlYGv~lAn~i~~Pia~kl~~~~~~e~~~~~~i~egi~~i~~g~~P~~~~e~l 261 (290) +.+|...+ | .|.+- .+...+.+..+-|+++--.+++-++.-+.....++...++.+..--........|.-..++. T Consensus 64 ~~tlttvGyGDi~p~t~-~e~~~~~~~~l~G~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v 142 (194) T 2r9r_B 64 VVSMTTVGYGDMVPTTI-GGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVTSSPKIPSSPDLKKS 142 (194) T ss_dssp HHHHTTCCCSSSCCCSH-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC-------------------------- T ss_pred EEEECCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 88741214768776676-76677203889989999999999999999999999999999999986410101006889999 Q ss_pred HHCCCHHHCC Q ss_conf 3119967683 Q gi|255764488|r 262 RKVLPLSERP 271 (290) Q Consensus 262 ~~~lp~~~r~ 271 (290) +.|.....+. T Consensus 143 ~~~~~~~~~~ 152 (194) T 2r9r_B 143 RSASTISKSD 152 (194) T ss_dssp ---------- T ss_pred HHHHHHCHHH T ss_conf 7776533004 No 4 >>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} (A:98-281) Probab=35.76 E-value=18 Score=15.41 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=27.6 Q ss_pred CCHHHHHHHHHHCC--CHHHCCCHHHHHHHHHHCCCCCCC Q ss_conf 99689999983119--967683889999999702434568 Q gi|255764488|r 252 AIPQVAIEYGRKVL--PLSERPSIEIVAQEVLQYNHNKKA 289 (290) Q Consensus 252 ~~P~~~~e~l~~~l--p~~~r~~~~e~~~~~~~~~~~~~a 289 (290) .-|..+.+-++.-| .|++||++.|..+.+.+....++| T Consensus 144 ~~~~~l~~Li~~cl~~dP~~Rps~~ei~~~l~~~~~~~~~ 183 (184) T 1mp8_A 144 NCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEKA 183 (184) T ss_dssp TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHC T ss_conf 7899999999997687976892999999999999888637 No 5 >>2gs4_A Protein YCIF; stress proteins, rubrerythrin, metal binding protein; 2.00A {Escherichia coli} (A:) Probab=32.85 E-value=28 Score=14.27 Aligned_cols=96 Identities=8% Similarity=0.086 Sum_probs=52.0 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCCHHHHHHHH-H Q ss_conf 9999996378989999999999999999962128999999999888----8899999999999961489789998666-8 Q gi|255764488|r 129 YMRMIIVGNARSYEIENLMDEEIDIILYEKLKPYHAISHMGESLPA----IGIVGAILGIIKAMGNLSQSPKILGTAI-G 203 (290) Q Consensus 129 ~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~~~~~~~~~a~~aPa----fGmiGTviGLI~ml~~l~d~p~~lG~~i-A 203 (290) .++-+..--..| ++++.++..++..+..-..-..+|+.+|+..|. .||-|-+-..-.++... .+++++-.++ + T Consensus 27 al~~l~~~a~~p-eLk~~l~~H~~eT~~qi~rLe~~~~~lg~~~~~~~~c~am~Gli~e~~~~~~~~-~~~~v~d~~li~ 104 (166) T 2gs4_A 27 ALAKLARATSNE-KLSQAFHAHLEETHGQIERIDQVVESESNLKIKRXKCVAXEGLIEEANEVIEST-EKNEVRDAALIA 104 (166) T ss_dssp HHHHHHHSCSCH-HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCCCCCHHHHHHHHHHHHHHTSC-CCHHHHHHHHHH T ss_pred HHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHH T ss_conf 999999986899-999999999999999999999999874899986687479999999999998603-774889999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999 Q gi|255764488|r 204 VSLTGTLLGIILSYSLCNPLTSQI 227 (290) Q Consensus 204 ~ALitTlYGv~lAn~i~~Pia~kl 227 (290) .|--..=|.+ -+|.-...+|..+ T Consensus 105 ~aq~~EhyEI-A~Y~tL~~~A~~l 127 (166) T 2gs4_A 105 AAQKVEHYEI-ASYGTLATLAEQL 127 (166) T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHT T ss_pred HHHHHHHHHH-HHHHHHHHHHHHC T ss_conf 9999999999-9999999999985 No 6 >>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2ivv_A* (A:108-314) Probab=28.12 E-value=33 Score=13.76 Aligned_cols=38 Identities=5% Similarity=0.100 Sum_probs=26.5 Q ss_pred CCCHHHHHHHHHHCC--CHHHCCCHHHHHHHHHHCCCCCC Q ss_conf 999689999983119--96768388999999970243456 Q gi|255764488|r 251 GAIPQVAIEYGRKVL--PLSERPSIEIVAQEVLQYNHNKK 288 (290) Q Consensus 251 g~~P~~~~e~l~~~l--p~~~r~~~~e~~~~~~~~~~~~~ 288 (290) ..-|.-+.+-++.-+ .|++||+++|.-+.+.+..+++| T Consensus 168 ~~~~~~~~~li~~cl~~dP~~Rps~~eil~~l~~~~~~~k 207 (207) T 2ivs_A 168 DNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVKRR 207 (207) T ss_dssp TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTC- T ss_pred CCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCCC T ss_conf 5445999999999768896689399999999999987679 No 7 >>1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} (A:136-185) Probab=25.10 E-value=35 Score=13.64 Aligned_cols=18 Identities=22% Similarity=0.110 Sum_probs=7.4 Q ss_pred HHHHHCCCHHHCCCHHHH Q ss_conf 998311996768388999 Q gi|255764488|r 259 EYGRKVLPLSERPSIEIV 276 (290) Q Consensus 259 e~l~~~lp~~~r~~~~e~ 276 (290) .+|+++||++.+..+.+. T Consensus 7 ~RL~~~Lp~~~q~ai~~~ 24 (50) T 1mtz_A 7 NRLIDELPAKYRDAIKKY 24 (50) T ss_dssp HHHHHTSCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 431223267789998876 No 8 >>2d0t_A Indoleamine 2,3-dioxygenase; helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: HEM PIM NHE; 2.30A {Homo sapiens} (A:263-316) Probab=24.46 E-value=31 Score=13.93 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=17.5 Q ss_pred HHHHHHHHCC---CCHHHHHHHHHHCCCHHHCCCHH Q ss_conf 9999999579---99689999983119967683889 Q gi|255764488|r 242 KKALIAYMNG---AIPQVAIEYGRKVLPLSERPSIE 274 (290) Q Consensus 242 ~egi~~i~~g---~~P~~~~e~l~~~lp~~~r~~~~ 274 (290) +|.++.|.+. ++-.-..+..|.|.|+..|.=++ T Consensus 14 ~D~lLgI~h~~~~~~~~~fl~emR~YMP~~HR~FL~ 49 (54) T 2d0t_A 14 FDVLLGIQQTAGGGHAAQFLQDMRRYMPPAHRNFLC 49 (54) T ss_dssp HHHHTTCCSSCSSSHHHHHHHHHGGGSCHHHHHHHH T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHH T ss_conf 999958845688860799999999857499999999 No 9 >>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} (A:361-438) Probab=23.58 E-value=25 Score=14.61 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=4.9 Q ss_pred CHHHHHHHHHHHHH Q ss_conf 74211455532355 Q gi|255764488|r 103 DPYNSTIFTSIPTV 116 (290) Q Consensus 103 ~p~~s~i~~~~~~~ 116 (290) ||+.....+++|.+ T Consensus 37 d~~~D~Ai~~~~~I 50 (78) T 2dpy_A 37 DPMLDKAITLWPQL 50 (78) T ss_dssp CHHHHHHHTTHHHH T ss_pred CHHHHHHHHHHHHH T ss_conf 98999999989999 No 10 >>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* (A:272-347) Probab=21.37 E-value=32 Score=13.89 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=9.7 Q ss_pred CHHHHHHHHHHHHHHHCHHHHHHHHHHH Q ss_conf 7421145553235530620279999999 Q gi|255764488|r 103 DPYNSTIFTSIPTVLENNELTTFICDYM 130 (290) Q Consensus 103 ~p~~s~i~~~~~~~~~~~~~~~fl~~~l 130 (290) ||+......++|.+. .|++.++ T Consensus 37 d~~~D~Ai~~~~~i~------~FL~Q~~ 58 (76) T 2obl_A 37 DPEADKAIKNRKLIQ------NFIQQST 58 (76) T ss_dssp CHHHHHHHHTHHHHH------HHHCCCT T ss_pred CHHHHHHHHHHHHHH------HHCCCCC T ss_conf 999999998259999------9828999 No 11 >>1yvj_A Janus kinase 3, tyrosine-protein kinase JAK3, JAK-3, JAK3, leukocyte janus; tyrosine kinase, SCID, severe combined immunodeficiency, STAT5, STAT6; HET: PTR 4ST; 2.55A {Homo sapiens} (A:94-290) Probab=21.16 E-value=45 Score=12.93 Aligned_cols=44 Identities=14% Similarity=0.063 Sum_probs=28.4 Q ss_pred HHHHHHHCCCCHHHHHHHHHHCC--CHHHCCCHHHHHHHHHHCCCC Q ss_conf 99999957999689999983119--967683889999999702434 Q gi|255764488|r 243 KALIAYMNGAIPQVAIEYGRKVL--PLSERPSIEIVAQEVLQYNHN 286 (290) Q Consensus 243 egi~~i~~g~~P~~~~e~l~~~l--p~~~r~~~~e~~~~~~~~~~~ 286 (290) .+...-....-|..+.+.+..-+ .|++||++.|..+++.+.... T Consensus 150 ~~~~~~~~~~~~~~l~~li~~C~~~dP~~RPt~~ei~~~L~~i~~~ 195 (197) T 1yvj_A 150 EGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSG 195 (197) T ss_dssp TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC T ss_conf 2567888814479999999997688966892999999999999734 No 12 >>1lkv_X Flagellar motor switch protein FLIG; chemotaxis, flagellar motion, structural protein; 2.80A {Thermotoga maritima} (X:1-65) Probab=21.15 E-value=45 Score=12.93 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=13.6 Q ss_pred HHHHHHHCCCCHHHHHHHHHHCCCHHH Q ss_conf 999999579996899999831199676 Q gi|255764488|r 243 KALIAYMNGAIPQVAIEYGRKVLPLSE 269 (290) Q Consensus 243 egi~~i~~g~~P~~~~e~l~~~lp~~~ 269 (290) +-+..+.++|+|+++.=. .+||||+. T Consensus 14 ~~l~~~l~~EhPQ~iAli-Ls~L~p~~ 39 (65) T 1lkv_X 14 VQLVNFLQSEHPQTIAVV-LSYLDPPV 39 (65) T ss_dssp THHHHHHHTSCHHHHHHH-HTTSCHHH T ss_pred HHHHHHHHHCCHHHHHHH-HHCCCHHH T ss_conf 999999982899999999-97199899 Done!