Query gi|255764488|ref|YP_003065099.2| flagellar motor protein MotA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 290
No_of_seqs 138 out of 898
Neff 7.0
Searched_HMMs 13730
Date Wed Jun 1 08:09:33 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764488.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1h8ba_ a.39.1.7 (A:) alpha-Ac 31.7 8.2 0.0006 15.1 1.3 28 241-269 10-37 (73)
2 d1mp8a_ d.144.1.7 (A:) Focal a 26.0 14 0.001 13.7 1.6 36 254-289 235-272 (273)
3 d1vjya_ d.144.1.7 (A:) Type I 21.2 18 0.0013 12.9 3.1 34 255-288 265-300 (303)
4 d2bbya_ a.4.5.15 (A:) DNA-bind 15.2 25 0.0018 12.1 3.3 44 74-135 5-48 (69)
5 d3sdha_ a.1.1.2 (A:) Hemoglobi 14.3 26 0.0019 11.9 7.0 68 102-170 42-115 (145)
6 d1zeea1 a.266.1.2 (A:6-392) Hy 12.3 29 0.0021 11.7 0.7 21 25-45 96-116 (387)
7 d1u46a_ d.144.1.7 (A:) Activat 12.3 30 0.0022 11.5 3.2 30 254-283 241-272 (273)
8 d1byga_ d.144.1.7 (A:) Carboxy 11.0 33 0.0024 11.3 2.7 31 255-285 227-259 (262)
9 d1lufa_ d.144.1.7 (A:) Musk ty 10.8 34 0.0025 11.2 3.3 31 254-284 268-300 (301)
10 d1xbba_ d.144.1.7 (A:) Tyrosin 10.4 35 0.0026 11.1 2.9 30 254-283 236-267 (277)
No 1
>d1h8ba_ a.39.1.7 (A:) alpha-Actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.72 E-value=8.2 Score=15.14 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=19.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCHHH
Q ss_conf 99999999579996899999831199676
Q gi|255764488|r 241 VKKALIAYMNGAIPQVAIEYGRKVLPLSE 269 (290)
Q Consensus 241 i~egi~~i~~g~~P~~~~e~l~~~lp~~~ 269 (290)
+++....+.. ..|-+.++.|+..|+|++
T Consensus 10 v~~aFr~lA~-~KpyVT~~dL~~~L~peq 37 (73)
T d1h8ba_ 10 VIASFRILAS-DKPYILAEELRRELPPDQ 37 (73)
T ss_dssp HHHHHHHHTT-SCSSBCHHHHHHHSCHHH
T ss_pred HHHHHHHHHC-CCCEECHHHHHHHCCHHH
T ss_conf 9999999968-998207999996669999
No 2
>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.01 E-value=14 Score=13.72 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=26.1
Q ss_pred HHHHHHHHHHCC--CHHHCCCHHHHHHHHHHCCCCCCC
Q ss_conf 689999983119--967683889999999702434568
Q gi|255764488|r 254 PQVAIEYGRKVL--PLSERPSIEIVAQEVLQYNHNKKA 289 (290)
Q Consensus 254 P~~~~e~l~~~l--p~~~r~~~~e~~~~~~~~~~~~~a 289 (290)
|.-+.+-++.-+ .|++||+++|+-+.+.+.-.++||
T Consensus 235 ~~~~~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~~k~ 272 (273)
T d1mp8a_ 235 PPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEKA 272 (273)
T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf 99999999997687976892999999999999778617
No 3
>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.20 E-value=18 Score=12.94 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=24.1
Q ss_pred HHHHHHHHHCC--CHHHCCCHHHHHHHHHHCCCCCC
Q ss_conf 89999983119--96768388999999970243456
Q gi|255764488|r 255 QVAIEYGRKVL--PLSERPSIEIVAQEVLQYNHNKK 288 (290)
Q Consensus 255 ~~~~e~l~~~l--p~~~r~~~~e~~~~~~~~~~~~~ 288 (290)
..+.+.++.-+ .|++||++.|+.+.+.+...++.
T Consensus 265 ~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~~~ 300 (303)
T d1vjya_ 265 RVMAKIMRECWYANGAARLTALRIKKTLSQLSQQEG 300 (303)
T ss_dssp HHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 999999999760698589599999999998888659
No 4
>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.19 E-value=25 Score=12.06 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf 68999999999999997410474476420742114555323553062027999999999996
Q gi|255764488|r 74 TYCDVLKLLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIV 135 (290)
Q Consensus 74 ~~~eli~~l~el~~~~Rk~GllaLE~~ie~p~~s~i~~~~~~~~~~~~~~~fl~~~l~~~v~ 135 (290)
+-.++++.+..++++..--.+.+|......|+. |+++-++-+.+
T Consensus 5 ~~~~l~d~lF~~Fek~~ywsiK~L~~~t~QP~~------------------yLKeiL~eIa~ 48 (69)
T d2bbya_ 5 DKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVV------------------YLKEILKEIGV 48 (69)
T ss_dssp HHHHHHHHHHHHHHHCSCBCHHHHHHHCCSCHH------------------HHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHH------------------HHHHHHHHHHH
T ss_conf 789999999999864678789999999819399------------------99999999999
No 5
>d3sdha_ a.1.1.2 (A:) Hemoglobin I {Ark clam (Scapharca inaequivalvis) [TaxId: 6561]}
Probab=14.35 E-value=26 Score=11.92 Aligned_cols=68 Identities=6% Similarity=0.037 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHHHHCHHHHHH------HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 074211455532355306202799------999999999637898999999999999999996212899999999
Q gi|255764488|r 102 DDPYNSTIFTSIPTVLENNELTTF------ICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLKPYHAISHMGE 170 (290)
Q Consensus 102 e~p~~s~i~~~~~~~~~~~~~~~f------l~~~l~~~v~g~~~~~~i~~~L~~ei~~~~~~~~~~~~~~~~~a~ 170 (290)
++|+....|..+....+......| +..++..+|+.-++++.+...+..- -..+.++......|+.+++
T Consensus 42 ~~P~~~~~F~~~~~~~~l~~~~~~~~H~~~v~~~l~~~v~~ldd~~~l~~~l~~l-g~~H~~~gV~~~~f~~~~~ 115 (145)
T d3sdha_ 42 DNQETIGYFKRLGNVSQGMANDKLRGHSITLMYALQNFIDQLDNPDDLVCVVEKF-AVNHITRKISAAEFGKING 115 (145)
T ss_dssp HCGGGGGGGGGGCCGGGGGGCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHHHTTTCCHHHHGGGHH
T ss_pred HCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHHCCCCHHHHHHHHH
T ss_conf 8999999987503413210489999999999998989987507377799999999-9887627999899999999
No 6
>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella oneidensis [TaxId: 70863]}
Probab=12.30 E-value=29 Score=11.67 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 112424899999999999999
Q gi|255764488|r 25 PYILIQPFEIVIVAGAGLGGF 45 (290)
Q Consensus 25 l~~f~~~~sllIV~GGtlaA~ 45 (290)
-+.+...+++.+=+|.+++.+
T Consensus 96 ~~p~~eas~la~~~~as~gv~ 116 (387)
T d1zeea1 96 TSPLLEASALAMHIGASIGVT 116 (387)
T ss_dssp SCSCHHHHHHHHHHHHHHTSC
T ss_pred CCCHHHHHHHHHHHHHHCCCC
T ss_conf 684144379999888863999
No 7
>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.25 E-value=30 Score=11.53 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=22.0
Q ss_pred HHHHHHHHHHCC--CHHHCCCHHHHHHHHHHC
Q ss_conf 689999983119--967683889999999702
Q gi|255764488|r 254 PQVAIEYGRKVL--PLSERPSIEIVAQEVLQY 283 (290)
Q Consensus 254 P~~~~e~l~~~l--p~~~r~~~~e~~~~~~~~ 283 (290)
|..+.+-+..-+ .|++||+++|+.+.++++
T Consensus 241 ~~~l~~li~~cl~~dp~~RPt~~ei~~~L~~~ 272 (273)
T d1u46a_ 241 PQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA 272 (273)
T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHC
T ss_conf 39999999997688966792999999999964
No 8
>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.04 E-value=33 Score=11.28 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=23.5
Q ss_pred HHHHHHHHHCC--CHHHCCCHHHHHHHHHHCCC
Q ss_conf 89999983119--96768388999999970243
Q gi|255764488|r 255 QVAIEYGRKVL--PLSERPSIEIVAQEVLQYNH 285 (290)
Q Consensus 255 ~~~~e~l~~~l--p~~~r~~~~e~~~~~~~~~~ 285 (290)
.-+.+.++.-+ .|++||++.|+-+.+.+.+.
T Consensus 227 ~~~~~li~~cl~~dP~~Rps~~~l~~~L~~i~~ 259 (262)
T d1byga_ 227 PAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKT 259 (262)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999756697689399999999999986
No 9
>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.79 E-value=34 Score=11.23 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=23.2
Q ss_pred HHHHHHHHHHCC--CHHHCCCHHHHHHHHHHCC
Q ss_conf 689999983119--9676838899999997024
Q gi|255764488|r 254 PQVAIEYGRKVL--PLSERPSIEIVAQEVLQYN 284 (290)
Q Consensus 254 P~~~~e~l~~~l--p~~~r~~~~e~~~~~~~~~ 284 (290)
|.-+.+.++.-+ .|++||+++|+.+.+++..
T Consensus 268 ~~~~~~li~~cl~~~P~~RPt~~ev~~~L~~i~ 300 (301)
T d1lufa_ 268 PLELYNLMRLCWSKLPADRPSFCSIHRILQRMC 300 (301)
T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHC
T ss_conf 299999999974889657939999999999842
No 10
>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.38 E-value=35 Score=11.14 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=22.0
Q ss_pred HHHHHHHHHHCC--CHHHCCCHHHHHHHHHHC
Q ss_conf 689999983119--967683889999999702
Q gi|255764488|r 254 PQVAIEYGRKVL--PLSERPSIEIVAQEVLQY 283 (290)
Q Consensus 254 P~~~~e~l~~~l--p~~~r~~~~e~~~~~~~~ 283 (290)
|.-+.+.++.-+ .|++||++++..+.+.+.
T Consensus 236 ~~~~~~li~~cl~~dp~~RPs~~~i~~~L~~~ 267 (277)
T d1xbba_ 236 PREMYDLMNLCWTYDVENRPGFAAVELRLRNY 267 (277)
T ss_dssp CHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCHHHCCCHHHHHHHHHCH
T ss_conf 79999999997588976890989999985288
Done!