RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|255764488|ref|YP_003065099.2| flagellar motor protein MotA [Candidatus Liberibacter asiaticus str. psy62] (290 letters) >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} (A:1-63,A:202-257,A:473-536) Length = 183 Score = 30.9 bits (69), Expect = 0.19 Identities = 15/112 (13%), Positives = 27/112 (24%), Gaps = 11/112 (9%) Query: 35 VIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLKLLYILMYNLKKGSR 94 ++ G G G +A L + V +LE + L + +++K Sbjct: 29 YVIVGGGTSGCPLAATLS--EKYKVLVLERGSL--PTAYNKGNSNNLRVGVHASVEKIIF 84 Query: 95 NETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENL 146 + P I + R I L Sbjct: 85 SNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVS-------ADFRVTGINAL 129 >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protein; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* (A:1-40,A:172-247,A:329-471) Length = 259 Score = 29.3 bits (65), Expect = 0.55 Identities = 17/156 (10%), Positives = 43/156 (27%), Gaps = 16/156 (10%) Query: 35 VIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLKLLYILMYNLKKGSR 94 V++ G G G++ A+ LK D + + + + + L + + Sbjct: 5 VVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRADE-----------VARYLSEYAI 53 Query: 95 N-ETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENLMDEEIDI 153 + +DD + + + + R I + Sbjct: 54 ARGVRHVVDDVQH-VGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLLINQTLGGRFQS 112 Query: 154 ILYEKLKPYHAISHMGESLPAIGIVGAILGIIKAMG 189 + A+G+ A + +++ G Sbjct: 113 FSD---VIGRNERTWINNCVAVGLSAAFVEPLESTG 145 >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} (A:1-58,A:216-269,A:483-546) Length = 176 Score = 28.5 bits (63), Expect = 1.1 Identities = 10/29 (34%), Positives = 13/29 (44%) Query: 35 VIVAGAGLGGFVMANPLKVIKDSGVSLLE 63 IV G G G +A L V+L+E Sbjct: 16 YIVVGGGSAGAAVAARLSEDPAVSVALVE 44 >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossmann fold, 6-hydroxylated FAD; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} (A:1-143,A:198-257,A:496-546) Length = 254 Score = 28.1 bits (61), Expect = 1.6 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Query: 25 PYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGV 59 P + P++ +IV GAG GG + A+ L + Sbjct: 1 PTVSATPYDYIIV-GAGPGGIIAADRLSEAGKKVL 34 >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} (A:1-40,A:123-179,A:298-355) Length = 155 Score = 27.6 bits (61), Expect = 2.1 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Query: 30 QPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLE 63 +P +I+I GAG+GG A L V+LLE Sbjct: 3 EPIDILIA-GAGIGGLSCALALHQAGIGKVTLLE 35 >1cf3_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.90A {Aspergillus niger} (A:1-63,A:228-322,A:532-583) Length = 210 Score = 27.2 bits (60), Expect = 2.7 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%) Query: 30 QPFEIVIVAGAGLGGFVMANPLKVIKDSGVSLLE 63 + + +I G GL G A L + V ++E Sbjct: 18 RTVDYIIA-GGGLTGLTTAARLTENPNISVLVIE 50 >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, substrate complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* (A:1-69,A:140-227,A:320-420) Length = 258 Score = 27.1 bits (59), Expect = 2.8 Identities = 8/29 (27%), Positives = 13/29 (44%) Query: 35 VIVAGAGLGGFVMANPLKVIKDSGVSLLE 63 V++ G G G +A L D ++E Sbjct: 35 VLIVGCGPAGLTLAAQLAAFPDIRTCIVE 63 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 26.7 bits (59), Expect = 3.4 Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 4/30 (13%) Query: 138 ARSYEIENLMDEEIDIILYEKLKPYHAISH 167 A IE+L ++++ Y + A+ Sbjct: 3 ADVMSIESL----VEVVFYRGMTMQVAVPR 28 >3fse_A Two-domain protein containing DJ-1/THIJ/PFPI- like and ferritin-like domains; YP_324989.1, structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} (A:207-365) Length = 159 Score = 26.7 bits (59), Expect = 3.4 Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 20/107 (18%) Query: 136 GNARSYEIENLMDEEIDIILY--EKLKPYHAISHMGESLPAIGIVGAILGIIKAMGNL-- 191 E + L E I E L+ Y ++ +GE P++ A + Sbjct: 28 EKESDVEAKALFQEXITNKQRHIEYLETY--LTRLGE-KPSLSANIA-----NQYAKVKT 79 Query: 192 ----SQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQ 234 S + +A+G TG I +LC T I + K+ Sbjct: 80 ALTGSDDIYQIRSALGDIQTG----IGDIGNLCAXYTDPIATAIFKE 122 >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} (A:1-69,A:232-326,A:536-587) Length = 216 Score = 26.9 bits (59), Expect = 3.6 Identities = 10/28 (35%), Positives = 14/28 (50%) Query: 36 IVAGAGLGGFVMANPLKVIKDSGVSLLE 63 I+AG GL G +A L V ++E Sbjct: 28 IIAGGGLTGLTVAAKLTENPKIKVLVIE 55 >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} (B:1-46,B:215-272,B:525-566) Length = 146 Score = 26.5 bits (58), Expect = 4.0 Identities = 16/112 (14%), Positives = 31/112 (27%), Gaps = 5/112 (4%) Query: 35 VIVAGAGLGGFVMANPLKVIKDSGVSLLEIFGYKALGQDTYCDVLKLLYILMYNLKKGSR 94 +V GAG G V+A L +D VS+L + + + Sbjct: 5 YVVVGAGNAGNVVAARLT--EDPDVSVLVLEAGVSDENVLGAE---ARPAQSRPNLSVLI 59 Query: 95 NETENHIDDPYNSTIFTSIPTVLENNELTTFICDYMRMIIVGNARSYEIENL 146 N + + + + V + V + ++ L Sbjct: 60 NAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAVKGVDGL 111 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.322 0.141 0.402 Gapped Lambda K H 0.267 0.0537 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,136,485 Number of extensions: 97031 Number of successful extensions: 359 Number of sequences better than 10.0: 1 Number of HSP's gapped: 359 Number of HSP's successfully gapped: 14 Length of query: 290 Length of database: 4,956,049 Length adjustment: 88 Effective length of query: 202 Effective length of database: 1,981,209 Effective search space: 400204218 Effective search space used: 400204218 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (25.0 bits)