BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|255764488|ref|YP_003065099.2| flagellar motor protein MotA [Candidatus Liberibacter asiaticus str. psy62] (290 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|255764488|ref|YP_003065099.2| flagellar motor protein MotA [Candidatus Liberibacter asiaticus str. psy62] Length = 290 Score = 582 bits (1499), Expect = e-168, Method: Compositional matrix adjust. Identities = 290/290 (100%), Positives = 290/290 (100%) Query: 1 MSTIIGLFITILCIIGGFYAMGGNPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVS 60 MSTIIGLFITILCIIGGFYAMGGNPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVS Sbjct: 1 MSTIIGLFITILCIIGGFYAMGGNPYILIQPFEIVIVAGAGLGGFVMANPLKVIKDSGVS 60 Query: 61 LLEIFGYKALGQDTYCDVLKLLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENN 120 LLEIFGYKALGQDTYCDVLKLLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENN Sbjct: 61 LLEIFGYKALGQDTYCDVLKLLYILMYNLKKGSRNETENHIDDPYNSTIFTSIPTVLENN 120 Query: 121 ELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLKPYHAISHMGESLPAIGIVGA 180 ELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLKPYHAISHMGESLPAIGIVGA Sbjct: 121 ELTTFICDYMRMIIVGNARSYEIENLMDEEIDIILYEKLKPYHAISHMGESLPAIGIVGA 180 Query: 181 ILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYII 240 ILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYII Sbjct: 181 ILGIIKAMGNLSQSPKILGTAIGVSLTGTLLGIILSYSLCNPLTSQIKSTRLKQHRLYII 240 Query: 241 VKKALIAYMNGAIPQVAIEYGRKVLPLSERPSIEIVAQEVLQYNHNKKAS 290 VKKALIAYMNGAIPQVAIEYGRKVLPLSERPSIEIVAQEVLQYNHNKKAS Sbjct: 241 VKKALIAYMNGAIPQVAIEYGRKVLPLSERPSIEIVAQEVLQYNHNKKAS 290 >gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 25.0 bits (53), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 7/66 (10%) Query: 34 IVIVAGAGLGGFVMANPLKVIKD-----SGVSLLEIFGYKALGQDTYCDVLKLLYILMYN 88 I++V G G +A L I D + + L GY +G+D +LKLL YN Sbjct: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGY--VGEDVENIILKLLQAADYN 173 Query: 89 LKKGSR 94 +++ R Sbjct: 174 VERAQR 179 >gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Length = 509 Score = 23.1 bits (48), Expect = 5.3, Method: Compositional matrix adjust. Identities = 9/18 (50%), Positives = 13/18 (72%) Query: 212 GIILSYSLCNPLTSQIKS 229 GII S+C PL++ IK+ Sbjct: 135 GIIQRQSVCEPLSTGIKA 152 >gi|254780551|ref|YP_003064964.1| tolQ protein [Candidatus Liberibacter asiaticus str. psy62] Length = 230 Score = 22.7 bits (47), Expect = 8.1, Method: Compositional matrix adjust. Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 4/47 (8%) Query: 143 IENLMDEEIDIILYEKLKP-YHAISHMGESLPA---IGIVGAILGII 185 I++ +D +D+ + +L+ +S +G A +GI+GA+LG++ Sbjct: 109 IQDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMM 155 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.141 0.402 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 190,313 Number of Sequences: 1233 Number of extensions: 8153 Number of successful extensions: 18 Number of sequences better than 100.0: 5 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 6 length of query: 290 length of database: 328,796 effective HSP length: 73 effective length of query: 217 effective length of database: 238,787 effective search space: 51816779 effective search space used: 51816779 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 38 (19.2 bits)