Query gi|255764489|ref|YP_003065094.2| stationary phase survival protein SurE [Candidatus Liberibacter asiaticus str. psy62] Match_columns 250 No_of_seqs 158 out of 1614 Neff 7.7 Searched_HMMs 33803 Date Wed Jun 1 14:52:16 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764489.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2phj_A 5'-nucleotidase SURE; 100.0 0 0 566.3 22.0 247 1-250 2-250 (251) 2 >2v4n_A Multifunctional protei 100.0 0 0 556.6 21.8 231 1-236 2-233 (233) 3 >2e6c_A 5'-nucleotidase SURE; 100.0 0 0 548.6 18.1 236 1-247 1-243 (244) 4 >1j9j_A Stationary phase survi 100.0 0 0 542.4 20.7 229 1-235 1-233 (233) 5 >1l5x_A SurviVal protein E; st 100.0 0 0 524.5 17.7 243 1-247 1-253 (280) 6 >1f0k_A MURG, UDP-N-acetylgluc 95.4 0.055 1.6E-06 32.3 6.3 112 1-126 7-128 (196) 7 >2r60_A Glycosyl transferase, 95.3 0.23 6.9E-06 28.5 10.4 114 1-126 8-152 (290) 8 >2p6p_A Glycosyl transferase; 94.9 0.12 3.5E-06 30.3 7.0 110 1-126 1-137 (217) 9 >2gek_A Phosphatidylinositol m 94.1 0.29 8.6E-06 27.9 7.4 114 1-127 21-140 (237) 10 >1iir_A Glycosyltransferase GT 93.7 0.095 2.8E-06 30.9 4.3 113 1-126 1-126 (254) 11 >3c48_A Predicted glycosyltran 92.6 0.78 2.3E-05 25.3 9.9 115 1-127 21-155 (250) 12 >2iw1_A Lipopolysaccharide cor 92.4 0.28 8.2E-06 28.1 5.1 87 1-94 1-91 (190) 13 >1rzu_A Glycogen synthase 1; g 92.3 0.14 4E-06 29.9 3.5 39 1-39 1-46 (285) 14 >1rrv_A Glycosyltransferase GT 91.1 0.11 3.2E-06 30.5 1.8 113 1-126 1-127 (257) 15 >2qzs_A Glycogen synthase; gly 90.9 0.25 7.5E-06 28.3 3.6 112 1-122 1-158 (284) 16 >2jjm_A Glycosyl transferase, 89.9 1.4 4.1E-05 23.8 6.7 112 1-126 16-134 (216) 17 >3fro_A GLGA glycogen synthase 89.0 0.64 1.9E-05 25.8 4.4 43 1-43 3-51 (251) 18 >2iyf_A OLED, oleandomycin gly 88.1 0.24 7.2E-06 28.4 1.8 113 1-126 8-134 (267) 19 >3beo_A UDP-N-acetylglucosamin 85.4 2.8 8.2E-05 21.9 6.2 118 1-128 9-130 (211) 20 >2vyc_A Biodegradative arginin 84.2 2.3 6.9E-05 22.4 5.2 88 1-126 1-94 (139) 21 >2iuy_A Avigt4, glycosyltransf 83.8 2.9 8.6E-05 21.8 5.5 93 1-126 4-113 (177) 22 >2x0d_A WSAF; GT4 family, tran 77.6 1.7 5.1E-05 23.2 2.6 40 1-40 47-92 (253) 23 >1qo0_D AMIR; binding protein, 75.5 4.3 0.00013 20.8 4.2 32 1-35 2-33 (101) 24 >1p80_A Catalase HPII; beta ba 71.3 2.4 7.1E-05 22.3 2.0 47 2-48 21-67 (172) 25 >3h4t_A Glycosyltransferase GT 70.6 2.3 6.9E-05 22.4 1.9 113 1-126 1-125 (244) 26 >1kjq_A GART 2, phosphoribosyl 65.8 6.6 0.0002 19.6 3.4 73 1-93 12-84 (125) 27 >2iya_A OLEI, oleandomycin gly 64.9 7.5 0.00022 19.3 3.5 110 1-125 13-138 (262) 28 >3d0r_A Protein CALG3; caliche 64.5 8.9 0.00026 18.8 3.8 112 1-126 21-160 (237) 29 >2ggs_A 273AA long hypothetica 57.0 11 0.00033 18.2 3.3 41 1-44 1-41 (273) 30 >2hqr_A Putative transcription 56.7 7.6 0.00022 19.2 2.3 31 1-34 1-31 (99) 31 >2p5y_A UDP-glucose 4-epimeras 53.7 13 0.00037 17.9 3.1 103 1-120 1-111 (311) 32 >1udb_A Epimerase, UDP-galacto 51.3 15 0.00044 17.4 3.1 139 1-152 1-166 (338) 33 >1gsa_A Glutathione synthetase 51.0 10 0.0003 18.5 2.2 39 1-39 2-44 (129) 34 >1kgs_A DRRD, DNA binding resp 48.2 19 0.00056 16.8 3.3 80 1-125 3-82 (124) 35 >2bll_A Protein YFBG; decarbox 47.9 18 0.00053 16.9 3.1 33 1-36 1-33 (345) 36 >1dcf_A ETR1 protein; beta-alp 47.6 20 0.0006 16.7 3.3 60 1-100 8-67 (136) 37 >2b4a_A BH3024; 10175646, stru 46.9 21 0.00061 16.6 4.3 80 1-125 16-96 (138) 38 >3i42_A Response regulator rec 46.8 9.6 0.00028 18.6 1.6 81 1-126 4-86 (127) 39 >3gvp_A Adenosylhomocysteinase 46.8 16 0.00047 17.3 2.7 125 17-152 68-226 (256) 40 >1a9x_B Carbamoyl phosphate sy 46.8 19 0.00057 16.8 3.1 30 1-34 38-68 (228) 41 >2fex_A Conserved hypothetical 45.7 11 0.00032 18.3 1.7 49 1-49 2-53 (188) 42 >2nlz_A Cephalosporin acylase; 44.5 19 0.00055 16.9 2.8 20 17-36 18-37 (38) 43 >1o1x_A Ribose-5-phosphate iso 44.0 23 0.00068 16.3 3.3 37 1-40 13-51 (141) 44 >3hbf_A Flavonoid 3-O-glucosyl 44.0 11 0.00033 18.2 1.5 98 16-126 30-147 (270) 45 >1ny5_A Transcriptional regula 43.9 16 0.00047 17.3 2.3 79 1-124 1-79 (139) 46 >2zkl_A Capsular polysaccharid 43.0 24 0.0007 16.2 3.5 37 1-40 1-37 (130) 47 >3c1o_A Eugenol synthase; phen 43.0 24 0.0007 16.2 3.9 37 1-40 5-41 (321) 48 >1n2s_A DTDP-4-, DTDP-glucose 42.8 15 0.00043 17.5 2.0 36 1-39 1-36 (299) 49 >3c97_A Signal transduction hi 41.8 25 0.00073 16.1 3.7 54 1-93 11-64 (65) 50 >1kew_A RMLB;, DTDP-D-glucose 41.4 23 0.00068 16.3 2.8 111 1-121 1-119 (342) 51 >3l4b_C TRKA K+ channel protie 40.9 19 0.00056 16.8 2.3 36 1-40 1-36 (117) 52 >3hdg_A Uncharacterized protei 39.6 27 0.00079 15.9 3.0 80 1-125 8-87 (137) 53 >3h9u_A Adenosylhomocysteinase 39.5 27 0.0008 15.9 3.4 126 17-153 57-217 (251) 54 >3he8_A Ribose-5-phosphate iso 36.9 30 0.00088 15.6 2.9 37 1-40 1-39 (128) 55 >1vhq_A Enhancing lycopene bio 36.7 30 0.00088 15.6 4.0 38 3-40 11-51 (232) 56 >2pk3_A GDP-6-deoxy-D-LYXO-4-h 36.3 30 0.00089 15.6 3.1 34 1-37 13-46 (321) 57 >2ayx_A Sensor kinase protein 35.2 31 0.00093 15.5 2.7 81 1-126 13-93 (137) 58 >2c1i_A Peptidoglycan glcnac d 35.0 32 0.00094 15.4 3.5 38 3-40 3-42 (196) 59 >3gpi_A NAD-dependent epimeras 34.9 32 0.00094 15.4 3.2 40 1-43 3-42 (286) 60 >1p2f_A Response regulator; DR 32.9 18 0.00052 17.0 1.1 78 1-91 3-80 (146) 61 >2pzm_A Putative nucleotide su 30.8 37 0.0011 15.0 3.6 37 1-40 21-57 (184) 62 >2r6j_A Eugenol synthase 1; ph 30.6 38 0.0011 15.0 4.6 38 1-41 12-49 (318) 63 >3dhn_A NAD-dependent epimeras 30.5 38 0.0011 15.0 2.7 101 1-121 5-107 (227) 64 >1efv_A Electron transfer flav 30.4 38 0.0011 15.0 5.0 111 1-124 2-117 (183) 65 >2r25_B Osmosensing histidine 29.7 39 0.0012 14.9 2.8 85 1-125 3-89 (133) 66 >1smk_A Malate dehydrogenase, 28.8 40 0.0012 14.8 3.1 108 1-123 9-122 (154) 67 >1ys7_A Transcriptional regula 28.5 41 0.0012 14.8 3.3 82 1-127 8-89 (131) 68 >3f5d_A Protein YDEA; unknow p 28.4 41 0.0012 14.8 3.2 43 1-43 3-47 (206) 69 >1tmy_A CHEY protein, TMY; che 27.7 40 0.0012 14.8 2.2 81 1-125 3-83 (120) 70 >1js1_X Transcarbamylase; alph 27.4 43 0.0013 14.7 4.0 31 9-39 14-44 (120) 71 >2j48_A Two-component sensor k 26.1 45 0.0013 14.5 2.4 79 2-125 3-83 (119) 72 >1pch_A Phosphocarrier protein 26.1 45 0.0013 14.5 3.1 77 2-80 4-80 (88) 73 >1n57_A Chaperone HSP31, prote 25.2 47 0.0014 14.4 2.7 28 10-37 72-99 (291) 74 >2yvt_A Hypothetical protein A 25.2 47 0.0014 14.4 4.5 42 1-42 6-47 (260) 75 >2bka_A CC3, TAT-interacting p 24.7 44 0.0013 14.6 2.0 37 1-40 19-55 (242) 76 >2vvr_A Ribose-5-phosphate iso 24.4 49 0.0014 14.3 4.5 38 1-40 2-40 (130) 77 >1m1n_A Nitrogenase molybdenum 24.2 49 0.0014 14.3 2.6 57 80-152 170-226 (248) 78 >1v4v_A UDP-N-acetylglucosamin 24.0 49 0.0015 14.3 8.0 98 16-125 21-123 (204) 79 >1e6u_A GDP-fucose synthetase; 23.8 42 0.0012 14.7 1.7 36 1-39 4-39 (321) 80 >1r6d_A TDP-glucose-4,6-dehydr 23.6 23 0.00069 16.3 0.4 114 1-124 1-125 (337) 81 >1r8j_A KAIA; circadian clock 23.4 48 0.0014 14.4 2.0 30 1-33 10-39 (178) 82 >3ccd_A Phosphocarrier protein 23.3 51 0.0015 14.2 2.7 78 2-81 5-82 (85) 83 >1qyc_A Phenylcoumaran benzyli 23.2 51 0.0015 14.2 4.7 106 1-123 5-110 (308) 84 >3d64_A Adenosylhomocysteinase 22.8 52 0.0015 14.1 3.2 65 17-89 89-159 (303) 85 >2pn1_A Carbamoylphosphate syn 22.4 53 0.0016 14.1 4.2 71 1-91 5-80 (104) 86 >1ptf_A Histidine-containing p 22.1 54 0.0016 14.0 2.7 76 2-81 5-82 (88) 87 >1sy7_A Catalase 1; heme oxida 22.0 54 0.0016 14.0 3.0 110 2-123 5-124 (184) 88 >2hpi_A DNA polymerase III alp 21.6 16 0.00048 17.2 -0.7 40 4-46 31-70 (83) 89 >2oqr_A Sensory transduction p 21.6 55 0.0016 14.0 4.3 79 1-125 5-83 (101) 90 >2vyo_A ECU11_0510, chitooligo 21.5 55 0.0016 14.0 4.1 33 2-34 27-61 (254) 91 >1qkk_A DCTD, C4-dicarboxylate 21.4 56 0.0016 14.0 2.6 80 1-125 4-83 (155) 92 >3enk_A UDP-glucose 4-epimeras 21.3 56 0.0017 13.9 3.2 113 1-124 6-127 (341) 93 >1sph_A Histidine-containing p 21.1 57 0.0017 13.9 2.8 79 2-82 5-83 (88) 94 >2w3z_A Putative deacetylase; 21.0 57 0.0017 13.9 2.8 12 64-75 113-124 (311) 95 >2gkg_A Response regulator hom 20.9 57 0.0017 13.9 3.9 80 2-126 7-89 (127) 96 >1vi1_A Fatty acid/phospholipi 20.4 28 0.00084 15.8 0.3 92 1-95 3-105 (345) 97 >1v7c_A Threonine synthase; PL 20.3 43 0.0013 14.6 1.2 34 58-92 67-100 (109) 98 >3da8_A Probable 5'-phosphorib 20.3 59 0.0017 13.8 2.4 118 1-127 13-148 (215) 99 >2gt1_A Lipopolysaccharide hep 20.1 54 0.0016 14.0 1.7 101 1-120 1-110 (165) No 1 >>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} (A:) Probab=100.00 E-value=0 Score=566.29 Aligned_cols=247 Identities=31% Similarity=0.476 Sum_probs=235.6 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEE-EEEECCCHHHHHHHHHHHC Q ss_conf 926882689868856999999998548919998179985650320224897058897110-4763272799999998750 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKK-RFAVHGTPVDCVVIALQKM 79 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~-~~~v~GtPaDcv~~~l~~l 79 (250) +||||||||||+||||++|+++|++.| +|+||||++||||+|||+|+++|+++++++.. .|+|+|||||||++||++| T Consensus 2 ~~ILlTNDDGi~a~Gl~~L~~~l~~~g-~V~VvAP~~~qSg~g~ait~~~p~~v~~~~~~~~~~v~GTPaDcV~~al~~l 80 (251) T 2phj_A 2 PTFLLVNDDGYFSPGINALREALKSLG-RVVVVAPDRNLSGVGHSLTFTEPLKMRKIDTDFYTVIDGTPADCVHLGYRVI 80 (251) T ss_dssp CEEEEECSSCTTCHHHHHHHHHHTTTS-EEEEEEESSCCTTSCCSCCCSSCEEEEEEETTEEEETTCCHHHHHHHHHHTT T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH T ss_conf 989997279888788999999998579-9999821898755736757899833477023442046894688888755554 Q ss_pred CC-CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 46-45419997148885310233345777899889871898532220013567661478888849999999867786673 Q gi|255764489|r 80 SD-KKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPNTT 158 (250) Q Consensus 80 ~~-~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~~~~~~~~~~~a~~~~~~ii~~l~~~~~p~~~ 158 (250) ++ +||||||||||+|.|+|.+++|||||||||||+++||||||+|+++. +..+|+.+++++.+++++++++++|.+. T Consensus 81 ~~~~kPDLViSGIN~G~N~G~~v~~SGTVgAA~eaa~~GiPaIA~S~~~~--~~~~~~~a~~~~~~li~~l~~~~~~~~~ 158 (251) T 2phj_A 81 LEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSAFGR--ENIMFEEIAKVCVDIVKKVLNEGIPEDT 158 (251) T ss_dssp TTTCCCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEEECS--SSCCHHHHHHHHHHHHHHHHHHCCCTTE T ss_pred CCCCCCEEEEECCCCCEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC--CCCCHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 15887349991798926727052116677899999974998058862676--3320067899889999999742788562 Q ss_pred EEECCCCCCCCHHCCCCEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCEEEECCCCCCCCH Q ss_conf 54314567881015883891376654355427840688651699723677778988550789968988990215356488 Q gi|255764489|r 159 LCNINFPRCSPEEVQKTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITTDLTDY 238 (250) Q Consensus 159 vlNINiP~~~~~~ikg~k~t~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~e~TD~~Al~~GyISVTPL~~DlT~~ 238 (250) +||||||.++..++||+|+|+|+++.|...+.+..+++++.|||+.......+.+++||.+++++||||||||++|+|++ T Consensus 159 ~lNVNiP~~~~~~~~g~~~t~~~~~~~~~~~~~~~d~~g~~~~w~~~~~~~~~~~~~tD~~al~~G~ISVTpl~~d~t~~ 238 (251) T 2phj_A 159 YLNVNIPNLRYEEIKGIKVTRQGKRAYKERVFKYIDPYGKPFYWIAAEEFGWHAEEGTDYWAVLNGYVSVTPLHLDLTNY 238 (251) T ss_dssp EEEEEEESSCGGGCCEEEECBCCCCSSEEEEEEEECTTSCEEEEEEEESTTTTCCTTBHHHHHHTTEEEEEEEESCCBCG T ss_pred EEEEECCCCCHHHCCCCEEEECCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCHHHHHHCCEEEEEEECCCCCCH T ss_conf 79860688874444653142024443233304667799967788546656778999978999869908981306287597 Q ss_pred HHHHHHHHHHCC Q ss_conf 999999987459 Q gi|255764489|r 239 NSQQYISLSLET 250 (250) Q Consensus 239 ~~l~~L~~~l~~ 250 (250) +.|+.|++|+++ T Consensus 239 ~~l~~l~~~~~~ 250 (251) T 2phj_A 239 KVMKSIKYLEDS 250 (251) T ss_dssp GGGGGGGGGGC- T ss_pred HHHHHHHHHHHC T ss_conf 999998788619 No 2 >>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosphatase, mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A (A:1-233) Probab=100.00 E-value=0 Score=556.63 Aligned_cols=231 Identities=29% Similarity=0.447 Sum_probs=223.0 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEE-EEEECCCHHHHHHHHHHHC Q ss_conf 926882689868856999999998548919998179985650320224897058897110-4763272799999998750 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKK-RFAVHGTPVDCVVIALQKM 79 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~-~~~v~GtPaDcv~~~l~~l 79 (250) |||||||||||+||||++|+++|+++| +|+||||++||||+|||+|+++|++++++++. .|+|+|||||||++||+++ T Consensus 2 M~ILiTNDDGi~s~Gl~~L~~al~~~g-~V~VvAP~~~qSg~g~ait~~~pl~v~~~~~~~~~~v~GTPaDcv~~al~~l 80 (233) T 2v4n_A 2 MRILLSNDDGVHAPGIQTLAKALREFA-DVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNAL 80 (233) T ss_dssp CEEEEECSSCTTCHHHHHHHHHHTTTS-EEEEEEESSCCTTCTTCCCCSSCCEEEECTTSCEEEETCCHHHHHHHHHHTT T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCC-CEEEEECCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCHHHHHHHHCCC T ss_conf 679997079889888999999998669-9899922999865614656899816899548258996388267898864101 Q ss_pred CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCE Q ss_conf 46454199971488853102333457778998898718985322200135676614788888499999998677866735 Q gi|255764489|r 80 SDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPNTTL 159 (250) Q Consensus 80 ~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~~~~~~~~~~~a~~~~~~ii~~l~~~~~p~~~v 159 (250) ++++|||||||||+|.|+|.+++||||||||+||+++||||||+|+++ ..+|+.+.+++.+++++++++++|+.++ T Consensus 81 ~~~~pDLViSGIN~G~N~G~~v~ySGTVgAA~eaa~~GipaiA~S~~~----~~~~~~a~~~~~~li~~l~~~~~~~~~~ 156 (233) T 2v4n_A 81 MRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNG----YQHYDTAAAVTCALLRGLSREPLRTGRI 156 (233) T ss_dssp SSSCCSEEEEEEEESCCCGGGGGGCHHHHHHHTTTTSSSCEEEEEESS----SSCHHHHHHHHHHHHHHHHHSCCCSCSE T ss_pred CCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCC----CCCHHHHHHHHHHHHHHHHHCCCCCCEE T ss_conf 579999899898389748864120178999999997599832897156----6454688876899998887557654317 Q ss_pred EECCCCCCCCHHCCCCEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCEEEECCCCCCC Q ss_conf 43145678810158838913766543554278406886516997236777789885507899689889902153564 Q gi|255764489|r 160 CNINFPRCSPEEVQKTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITTDLT 236 (250) Q Consensus 160 lNINiP~~~~~~ikg~k~t~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~e~TD~~Al~~GyISVTPL~~DlT 236 (250) ||||||.++..+++|+|+|+|+++.|...+.+..+++++.|||+.......+.+++||.+++++||||||||++||| T Consensus 157 lNVNiP~~~~~~~~g~~~t~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~tD~~a~~~G~isVTPl~~d~T 233 (233) T 2v4n_A 157 LNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLT 233 (233) T ss_dssp EEEEECSSCGGGCCCEEECBCCEESCCCCEEEEECTTSCEEEEECCCCCEEECSTTBHHHHHHTTCEEEEEECSCCC T ss_pred EEEECCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCHHHHHHCCEEEEEEECCCCC T ss_conf 89866898300378659775466244433211007999748998788777889998799999799489814575774 No 3 >>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP, hydrolase; 2.05A {Thermus thermophilus HB8} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A (A:) Probab=100.00 E-value=0 Score=548.60 Aligned_cols=236 Identities=31% Similarity=0.425 Sum_probs=218.9 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEE-------EEEEEECCCHHHHHH Q ss_conf 9268826898688569999999985489199981799856503202248970588971-------104763272799999 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTIS-------KKRFAVHGTPVDCVV 73 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~-------~~~~~v~GtPaDcv~ 73 (250) |||||||||||+||||++|+++|++.| +|+||||++||||+|||+|+++|+++.++. .+.|+|+|||||||+ T Consensus 1 M~ILiTNDDGi~a~Gi~~L~~aL~~~g-~V~VvAP~~~qSg~g~ait~~~~l~~~~~~~~~~~~~~~~~~v~GTPaDcv~ 79 (244) T 2e6c_A 1 MRILVTNDDGIYSPGLWALAEAASQFG-EVFVAAPDTEQSAAGHAITIAHPVRAYPHPSPLHAPHFPAYRVRGTPADCVA 79 (244) T ss_dssp CEEEEECSSCTTCHHHHHHHHHHTTTS-EEEEEEECSSCCCCCSSCCCSSCBEEEECCCCTTSCCCCEEEEESCHHHHHH T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCC-CEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCHHHHHH T ss_conf 959997279989766999999998669-9899951899853762455799806898335555788733898074068998 Q ss_pred HHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 99875046454199971488853102333457778998898718985322200135676614788888499999998677 Q gi|255764489|r 74 IALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAYTYENMIPWEVSETHAPRVLRQLLKTQ 153 (250) Q Consensus 74 ~~l~~l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~~~~~~~~~~~a~~~~~~ii~~l~~~~ 153 (250) +||+++ +||||||||||+|.|+|.+++|||||||||||+++||||||+|+++.. +..+|+.+++++.++++++++. T Consensus 80 ~al~~~--~~pDLViSGIN~G~N~G~~v~ySGTVgAA~eaa~~GiPaIA~S~~~~~-~~~~~~~a~~~~~~li~~~~~~- 155 (244) T 2e6c_A 80 LGLHLF--GPVDLVLSGVNLGSNLGHEIWHSGTVAAAKQGYLFGLSAAAFSVPLNG-EVPDFAGLRPWLLRTLETLLRL- 155 (244) T ss_dssp HHHHHS--CSCCEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCEEEEEEECCSS-SCCCHHHHHHHHHHHHHHHTTS- T ss_pred HHHHCC--CCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCC-CCCHHHHHHHHHHHHHHHHHHH- T ss_conf 865136--898879968988517564252552777888888631354224420477-6520367999999999998742- Q ss_pred CCCCCEEECCCCCCCCHHCCCCEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCEEEECCCC Q ss_conf 86673543145678810158838913766543554278406886516997236777789885507899689889902153 Q gi|255764489|r 154 IPNTTLCNINFPRCSPEEVQKTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITT 233 (250) Q Consensus 154 ~p~~~vlNINiP~~~~~~ikg~k~t~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~e~TD~~Al~~GyISVTPL~~ 233 (250) |.+.+||||||. ..+|+|+|+|+++.|...+.+..+++++.+||+. ++...+.+++||.+|+.+||||||||++ T Consensus 156 -~~~~~lNVN~P~----~~~gi~~tr~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~tD~~al~~G~isvTPl~~ 229 (244) T 2e6c_A 156 -ERPFLVNVNLPL----RPKGFLWTRQSVRAYEGVVIPGEDPMGRPFYWFA-PRPLKEAEEGTDRWAVAQGFVSATPLRL 229 (244) T ss_dssp -CSSCEEEEECCS----SCCEEEECBCCCCCEECCEEEEECTTSCEEEEEC-CEESSCCCTTBHHHHHHTTEEEEEEBCS T ss_pred -CCCEEEECCCCC----CCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEC-CCCCCCCCCCCHHHHHHCCCEEEEEECC T ss_conf -210477202343----2221589850100235552334288885479967-8767778999899999789289802066 Q ss_pred CCCCHHHHHHHHHH Q ss_conf 56488999999987 Q gi|255764489|r 234 DLTDYNSQQYISLS 247 (250) Q Consensus 234 DlT~~~~l~~L~~~ 247 (250) |||||+.|++|++| T Consensus 230 d~t~~~~l~~l~~~ 243 (244) T 2e6c_A 230 DLTDETRLQPTLAH 243 (244) T ss_dssp CCBCTTCSSCCCCC T ss_pred CCCCHHHHHHHHCC T ss_conf 77583888887667 No 4 >>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} (A:1-233) Probab=100.00 E-value=0 Score=542.40 Aligned_cols=229 Identities=29% Similarity=0.407 Sum_probs=217.2 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEE----EEEEEEECCCHHHHHHHHH Q ss_conf 926882689868856999999998548919998179985650320224897058897----1104763272799999998 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTI----SKKRFAVHGTPVDCVVIAL 76 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~----~~~~~~v~GtPaDcv~~~l 76 (250) |||||||||||+||||++|+++|++. |+|+||||++||||+|||||+++|++++++ +.+.|+|+|||||||++|| T Consensus 1 M~ILlTNDDGi~spGi~aL~~~L~~~-~~V~VvAP~~~qSg~g~ait~~~~~~v~~~~~~~~~~~~~v~GTPaDcV~~gl 79 (233) T 1j9j_A 1 MRILVTNDDGIQSKGIIVLAELLSEE-HEVFVVAPDKERSATGHSITIHVPLWMKKVFISERVVAYSTTGTPADCVKLAY 79 (233) T ss_dssp CEEEEECSSCTTCHHHHHHHHHHTTT-SEEEEEEESSCCTTCTTCCCCSSCCCEEECCCSSSEEEEEESSCHHHHHHHHH T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCHHHHHHHHH T ss_conf 95999727998976799999998669-91999956998766603444799835555215888238984797089999666 Q ss_pred HHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 75046454199971488853102333457778998898718985322200135676614788888499999998677866 Q gi|255764489|r 77 QKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPN 156 (250) Q Consensus 77 ~~l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~~~~~~~~~~~a~~~~~~ii~~l~~~~~p~ 156 (250) +++++++|||||||||+|.|+|.+++|||||||||||+++||||||+||++. ...+|+.+++++.+++++++++++|+ T Consensus 80 ~~~~~~~pDLViSGIN~G~N~G~~v~~SGTVgAA~eAa~~GipaIA~S~~~~--~~~~~~~a~~~~~~li~~l~~~~~p~ 157 (233) T 1j9j_A 80 NVVMDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISSANY--ESPDFEGAARFLIDFLKEFDFSLLDP 157 (233) T ss_dssp HTTSTTCCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEESCS--SSCCHHHHHHHHHHHHHHCCGGGSCT T ss_pred HHHCCCCCCEEEECCCCCCCCCEEEEECHHHHHHHHHCCCCCCCEEEECCCC--CCCCHHHHHHHHHHHHHHHHHCCCCC T ss_conf 4102689888996654787565435530254588613246888047772668--87377999999999999998457765 Q ss_pred CCEEECCCCCCCCHHCCCCEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCEEEECCCCCC Q ss_conf 7354314567881015883891376654355427840688651699723677778988550789968988990215356 Q gi|255764489|r 157 TTLCNINFPRCSPEEVQKTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITTDL 235 (250) Q Consensus 157 ~~vlNINiP~~~~~~ikg~k~t~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~e~TD~~Al~~GyISVTPL~~Dl 235 (250) +++||||||.. +++|+|+|+|+++.|...+.+..+++++.+||+.......+.+++||.+|+++||||||||++|| T Consensus 158 ~~~lNVN~P~~---~~~g~~~t~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~tD~~al~~g~isVTPL~~dl 233 (233) T 1j9j_A 158 FTMLNINVPAG---EIKGWRFTRQSRRRWNDYFEERVSPFGEKYYWMMGEVIEDDDRDDVDYKAVREGYVSITPIHPFL 233 (233) T ss_dssp TCEEEEEECSS---CCCEEEECBCCCCEEEEEEEEEECTTSCEEEEEEEEEECCCCCSSBHHHHHHTTEEEEEEECSCC T ss_pred CCCCCCCCCHH---HHCCCEEEEECCCCCCCCCEECCCCCCCEEEEECCCCCCCCCCCCHHHHHHHCCEEEEEECCCCC T ss_conf 52036889836---60783788843104666410211899972799636766788999749999979908982326687 No 5 >>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/beta protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} (A:) Probab=100.00 E-value=0 Score=524.47 Aligned_cols=243 Identities=28% Similarity=0.402 Sum_probs=214.1 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEE---EEEEECCCHHHHHHHHHH Q ss_conf 92688268986885699999999854891999817998565032022489705889711---047632727999999987 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISK---KRFAVHGTPVDCVVIALQ 77 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~---~~~~v~GtPaDcv~~~l~ 77 (250) .||||||||||+||||++|+++|++.+ +|+||||++||||+|||+|+++|+++++++. +.|+|+|||||||++||+ T Consensus 1 ~rILiTNDDGi~spGi~aL~~aL~~~~-~V~VvAP~~~qSg~g~a~t~~~~l~~~~v~~~~~~~~~v~GTPaDcV~~aL~ 79 (280) T 1l5x_A 1 XKILVTNDDGVHSPGLRLLYQFALSLG-DVDVVAPESPKSATGLGITLHKPLRXYEVDLCGFRAIATSGTPSDTVYLATF 79 (280) T ss_dssp CEEEEECSSCTTCHHHHHHHHHHGGGS-EEEEEEESSCTTTSCSSCCCSSCBCEEEEECSSSEEEEESSCHHHHHHHHHH T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCEECCCCCEEEEECCCCCEEEEECCCHHHHHHHHHH T ss_conf 969997479989778999999998569-9899941898776748875799856999615882489964770888988775 Q ss_pred HCCCCCCCEEEECCCCCCCCCHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCCHHHHHHHHHHHHHHHHH Q ss_conf 504645419997148885310233-345777899889871898532220013567-----66147888884999999986 Q gi|255764489|r 78 KMSDKKPDLILSGVNVGTNTSNHV-AYSGTLAAAFEGSLQGIRSFALSQAYTYEN-----MIPWEVSETHAPRVLRQLLK 151 (250) Q Consensus 78 ~l~~~~pDlViSGiN~G~N~g~~v-~ySGTvgAA~ea~~~GipsIAiS~~~~~~~-----~~~~~~a~~~~~~ii~~l~~ 151 (250) +++ ++|||||||||+|.|+|.++ +|||||||||||+++||||||+|+++.... ...|+.+.+++.++++++++ T Consensus 80 ~l~-~~pDLVvSGIN~G~N~G~~v~~~SGTVgAA~EAa~~GiPaIA~S~~~~~~~~~~~~~~a~~~a~~~v~~l~~~~~~ 158 (280) T 1l5x_A 80 GLG-RKYDIVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPALAYSAYLENWNELLNNKEAVEIXGAVVSSTASYVLK 158 (280) T ss_dssp HHT-SCCSEEEEEEEEBCCCSHHHHTTCHHHHHHHHHHHTTCCEEEEEECCSCHHHHHTCHHHHHHHHHHHHHHHHHHHH T ss_pred HCC-CCCCEEEECCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCEEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 138-9987899677776557835585579999999999709985255520268521002067899999999999999986 Q ss_pred CCCCCC-CEEECCCCCCCCHHCCCCEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCEEEEC Q ss_conf 778667-3543145678810158838913766543554278406886516997236777789885507899689889902 Q gi|255764489|r 152 TQIPNT-TLCNINFPRCSPEEVQKTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTP 230 (250) Q Consensus 152 ~~~p~~-~vlNINiP~~~~~~ikg~k~t~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~e~TD~~Al~~GyISVTP 230 (250) .++|.+ .+||||||.++..+ +|+++|+++++.|...+.+..+++++.|||.. +......++++|.+++++||||||| T Consensus 159 ~~~~~~~~~lNVNiP~~~~~~-~g~~~t~~~~~~~~~~~~~~~d~~g~~~~~~~-~~~~~~~~~~~d~~~l~~G~isvTp 236 (280) T 1l5x_A 159 NGXPQGVDVISVNFPRRLGRG-VRAKLVKAAKLRYAQQVVERVDPRGVRYYWLY-GRDLAPEPETDVYVVLKEGGIAITP 236 (280) T ss_dssp HCSCTTCSEEEEEECSCCCTT-CCEEECBCCSCSBCSCCEEEECTTSCEEEECS-CSBCCCCTTBHHHHHHTSCCEEEEE T ss_pred CCCCCCCCEECCCCCCCCCCC-CCEEEEEECCCCCCCCEEEEECCCCCEEEEEC-CCCCCCCCCCCHHHHHHCCEEEEEE T ss_conf 389878834315787564557-83169982572467733785379998688505-8757899998899999799899804 Q ss_pred CCCCCCCHHHHHHHHHH Q ss_conf 15356488999999987 Q gi|255764489|r 231 ITTDLTDYNSQQYISLS 247 (250) Q Consensus 231 L~~DlT~~~~l~~L~~~ 247 (250) |++|+|++..++.|+.| T Consensus 237 L~~d~t~~~~l~~l~~~ 253 (280) T 1l5x_A 237 LTLNLNAVDAHREVDXD 253 (280) T ss_dssp ECCCCBSSCCBCCCCHH T ss_pred EECCCCCHHHHHHHCHH T ss_conf 10158775888753699 No 6 >>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} (A:1-171,A:340-364) Probab=95.36 E-value=0.055 Score=32.34 Aligned_cols=112 Identities=12% Similarity=0.019 Sum_probs=65.6 Q ss_pred CEEEEECCC-CCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEE------CCCHHHHH- Q ss_conf 926882689-8688569999999985489199981799856503202248970588971104763------27279999- Q gi|255764489|r 1 MRILLTNDD-GIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAV------HGTPVDCV- 72 (250) Q Consensus 1 m~ILitNDD-G~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v------~GtPaDcv- 72 (250) ||||++-.. |=...-+..|++.|.+.||+|.|+.+....+..- -....+++..+....+.- .-.+...- T Consensus 7 mrIL~v~~~~gG~~~~~~~la~~L~~~G~eV~v~~~~~~~~~~~---~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 83 (196) T 1f0k_A 7 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADL---VPKHGIEIDFIRISGLRGKGIKALIAAPLRIFN 83 (196) T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTHHHH---GGGGTCEEEECCCCCCTTCCHHHHHTCHHHHHH T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH---HHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHH T ss_conf 87999917846879999999999997889799997887065544---444297089984578677778999986999999 Q ss_pred -HHHHHH-CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf -999875-046454199971488853102333457778998898718985322200 Q gi|255764489|r 73 -VIALQK-MSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQA 126 (250) Q Consensus 73 -~~~l~~-l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~ 126 (250) ...+.. +...+||+|++- ....+..+++.+...|+|-|-.-+. T Consensus 84 ~~~~l~~~l~~~kpDiI~~~-----------~~~~~~~~~~~~~~~~ip~v~~~h~ 128 (196) T 1f0k_A 84 AWRQARAIMKAYKPDVVLGM-----------GGYVSGPGGLAAWSLGIPVVLHEQN 128 (196) T ss_dssp HHHHHHHHHHHHCCSEEEEC-----------SSTTHHHHHHHHHHTTCCEEEEECS T ss_pred HHHHHHHHHHCCCCCEEEEC-----------CCCCHHHHHHHHHHCCCCEEEEECC T ss_conf 99999999750299789978-----------9734199999998669988998268 No 7 >>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* (A:1-234,A:444-499) Probab=95.26 E-value=0.23 Score=28.53 Aligned_cols=114 Identities=10% Similarity=0.066 Sum_probs=67.1 Q ss_pred CEEEEECCCCCCC----------------HHHHHHHHHHHHCCCCEEEECCCCCCCCEE------EEECCCCCEEEEEEE Q ss_conf 9268826898688----------------569999999985489199981799856503------202248970588971 Q gi|255764489|r 1 MRILLTNDDGIKS----------------KGLITLENIARSISDDIWICAPEMDQSCLA------NSLTMSRNIACRTIS 58 (250) Q Consensus 1 m~ILitNDDG~~a----------------~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~------~ait~~~~~~~~~~~ 58 (250) ||||+.+..+... .-+..|++.|.+.||+|.|++|..+..-.. ........+...++. T Consensus 8 mrIl~vs~~~~~~~~~~~~~~~P~~GG~~~~~~~La~~L~~~Gh~V~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~ 87 (290) T 2r60_A 8 KHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYYQETNKVRIVRIP 87 (290) T ss_dssp CEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCSEEECTTCSSEEEEEEC T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCEEEEEEC T ss_conf 35999868766674344658895989899999999999996699699994568888875456764236425966999946 Q ss_pred EE---EEE------ECCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 10---476------327279999999875046454199971488853102333457778998898718985322200 Q gi|255764489|r 59 KK---RFA------VHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQA 126 (250) Q Consensus 59 ~~---~~~------v~GtPaDcv~~~l~~l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~ 126 (250) .. .+. .......+....+ .....+||+|.+ ..+.....|++-+...|+|-|..-.. T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~DiIh~-----------~~~~~~~~a~~~ar~~~iP~V~t~H~ 152 (290) T 2r60_A 88 FGGDKFLPKEELWPYLHEYVNKIINFY-REEGKFPQVVTT-----------HYGDGGLAGVLLKNIKGLPFTFTGHS 152 (290) T ss_dssp CSCSSCCCGGGCGGGHHHHHHHHHHHH-HHHTCCCSEEEE-----------EHHHHHHHHHHHHHHHCCCEEEECSS T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHCCCCEEEEE-----------CCCHHHHHHHHHHHHCCCCEEEEECC T ss_conf 786456678888899999999999999-972899739997-----------87427778888776329988999246 No 8 >>2p6p_A Glycosyl transferase; GT-B family, X-RAY-diffraction,urdamycina- biosynthesis; 1.88A {Streptomyces fradiae} (A:1-200,A:368-384) Probab=94.93 E-value=0.12 Score=30.31 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=60.4 Q ss_pred CEEEEECCCCCCCHH----HHHHHHHHHHCCCCEEEECCCCCCCCEEEEEC----CCCCEEEE-----EEEEEEEEECCC Q ss_conf 926882689868856----99999999854891999817998565032022----48970588-----971104763272 Q gi|255764489|r 1 MRILLTNDDGIKSKG----LITLENIARSISDDIWICAPEMDQSCLANSLT----MSRNIACR-----TISKKRFAVHGT 67 (250) Q Consensus 1 m~ILitNDDG~~a~g----l~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait----~~~~~~~~-----~~~~~~~~v~Gt 67 (250) ||||+.-= -+.| +..|++.|.+.||+|+++.|....+-...... +....... ..........+. T Consensus 1 MkIli~~~---~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (217) T 2p6p_A 1 MRILFVAA---GSPATVFALAPLATAARNAGHQVVMAANQDMGPVVTGVGLPAVATTDLPIRHFITTDREGRPEAIPSDP 77 (217) T ss_dssp CEEEEECC---SSHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEESCSSCHHHHHHBCTTSCBCCCCCSH T ss_pred CEEEEECC---CCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCEEEECCCCHHHHHHCCCCCCCCCCCCHHH T ss_conf 93999899---977589999999999998899899991852666787669757744874066540232245631131026 Q ss_pred HHHH----------HHHH---HH-HCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 7999----------9999---87-5046454199971488853102333457778998898718985322200 Q gi|255764489|r 68 PVDC----------VVIA---LQ-KMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQA 126 (250) Q Consensus 68 PaDc----------v~~~---l~-~l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~ 126 (250) .... +.-- +. .+.+.+||+||++... .+|..-|...|||.+.++.. T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~D~~~-------------~~~~~vA~~l~IP~v~~~~~ 137 (217) T 2p6p_A 78 VAQARFTGRWFARMAASSLPRMLDFSRAWRPDLIVGGTMS-------------YVAPLLALHLGVPHARQTWD 137 (217) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTC-------------THHHHHHHHHTCCEEEECCS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCC-------------HHHHHHHHHHHCCCCEEECC T ss_conf 7899999999999999999999999875065533034444-------------17889999851431001023 No 9 >>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, binary complex; HET: GDP; 2.40A {Mycobacterium smegmatis str} PDB: 2gej_A* (A:1-197,A:367-406) Probab=94.07 E-value=0.29 Score=27.91 Aligned_cols=114 Identities=11% Similarity=0.068 Sum_probs=61.8 Q ss_pred CEEEEECCCCC-CCHH----HHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHH Q ss_conf 92688268986-8856----999999998548919998179985650320224897058897110476327279999999 Q gi|255764489|r 1 MRILLTNDDGI-KSKG----LITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIA 75 (250) Q Consensus 1 m~ILitNDDG~-~a~g----l~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~ 75 (250) ||||+..+.-. ..-| +..|.+.|.+.||+|.|+++..+...........-++.............-.+ ..... T Consensus 21 MkIl~v~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vi~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~ 98 (237) T 2gek_A 21 MRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVSGGKAVPIPYNGSVARLRFGP--ATHRK 98 (237) T ss_dssp CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTEEECCCCC------------CCH--HHHHH T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEECCCEEEECCCCCCHHHHHCCH--HHHHH T ss_conf 8899989986899988999999999999977998999941898877763032372699815676312220358--99999 Q ss_pred HHH-CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 875-0464541999714888531023334577789988987189853222001 Q gi|255764489|r 76 LQK-MSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAY 127 (250) Q Consensus 76 l~~-l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~ 127 (250) +.. +...+||+|.+--..- ..-+++-+...++|-|...... T Consensus 99 l~~~l~~~~~DiI~~~~~~~-----------~~~~~~~~~~~~~p~v~~~h~~ 140 (237) T 2gek_A 99 VKKWIAEGDFDVLHIHEPNA-----------PSLSMLALQAAEGPIVATFHTS 140 (237) T ss_dssp HHHHHHHHCCSEEEEECCCS-----------SSHHHHHHHHEESSEEEEECCC T ss_pred HHHHHHHCCCCEEEEEEECC-----------CCHHHHHHHHCCCCCCEEEEEC T ss_conf 99999860776368864033-----------2024667875289852144210 No 10 >>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} (A:1-222,A:384-415) Probab=93.68 E-value=0.095 Score=30.91 Aligned_cols=113 Identities=17% Similarity=0.115 Sum_probs=56.7 Q ss_pred CEEEEECCCCC-CCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHH-------HHH Q ss_conf 92688268986-8856999999998548919998179985650320224897058897110476327279-------999 Q gi|255764489|r 1 MRILLTNDDGI-KSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPV-------DCV 72 (250) Q Consensus 1 m~ILitNDDG~-~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPa-------Dcv 72 (250) ||||+.--=+. +---+..|.++|.+.||+|+++.|...++-....---..++...........-...+. ++. T Consensus 1 MrIli~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (254) T 1iir_A 1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCAPPDCAERLAEVGVPHVPVGPSARAPIQRAKPLTAEDVRRFTTEAI 80 (254) T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEECCC-------CCSCCCHHHHHHHHHHHH T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 97999889856489999999999998899799996833566676579869977986666542155213899999999999 Q ss_pred HH---HHHHCC-CCC-CCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 99---987504-645-4199971488853102333457778998898718985322200 Q gi|255764489|r 73 VI---ALQKMS-DKK-PDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQA 126 (250) Q Consensus 73 ~~---~l~~l~-~~~-pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~ 126 (250) .. .+..+. ..+ +|+|+++ .+ ...+..-|..+|||.+.++.. T Consensus 81 ~~~~~~~~~l~~~~~~~~~ii~d----------~~---~~~~~~vA~~lgiP~v~~~~~ 126 (254) T 1iir_A 81 ATQFDEIPAAAEGCAAVVTTGLL----------AA---AIGVRSVAEKLGIPYFYAFHC 126 (254) T ss_dssp HHHHHHHHHHTTTCSEEEEESCH----------HH---HHHHHHHHHHHTCCEEEEESS T ss_pred HHHHHHHHHHHHCCCCEEEEEEE----------EC---HHHHHHHHHHHCCCEEEECCC T ss_conf 99999999986104303500899----------72---558999999839980210255 No 11 >>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate assisted catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* (A:1-222,A:411-438) Probab=92.62 E-value=0.78 Score=25.31 Aligned_cols=115 Identities=12% Similarity=0.000 Sum_probs=64.2 Q ss_pred CEEEEECCCCCC--------CHH----HHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEE---EEEC Q ss_conf 926882689868--------856----9999999985489199981799856503202248970588971104---7632 Q gi|255764489|r 1 MRILLTNDDGIK--------SKG----LITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKR---FAVH 65 (250) Q Consensus 1 m~ILitNDDG~~--------a~g----l~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~---~~v~ 65 (250) ||||+.++.-.- .-| +..|.+.|.+.||+|.|+++.....-...... ...+......... +... T Consensus 21 mkIl~i~~~~~p~~~~~~~~~GG~~~~~~~l~~~L~~~G~~V~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 99 (250) T 3c48_A 21 MRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGEIVRV-AENLRVINIAAGPYEGLSKE 99 (250) T ss_dssp CEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCSEEEE-ETTEEEEEECCSCSSSCCGG T ss_pred CEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEC-CCCEEEEECCCCCCCCCCHH T ss_conf 78999846536300059998678999999999999977996999945898876330112-69728998047762334476 Q ss_pred ----CCHHHHHHHHHHH-CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf ----7279999999875-0464541999714888531023334577789988987189853222001 Q gi|255764489|r 66 ----GTPVDCVVIALQK-MSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAY 127 (250) Q Consensus 66 ----GtPaDcv~~~l~~-l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~ 127 (250) -.........+.. +...+||+|.+ -.+....-+.+-+...++|-+...... T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~Diih~-----------~~~~~~~~~~~~~~~~~~p~v~~~h~~ 155 (250) T 3c48_A 100 ELPTQLAAFTGGMLSFTRREKVTYDLIHS-----------HYWLSGQVGWLLRDLWRIPLIHTAHTL 155 (250) T ss_dssp GGGGGHHHHHHHHHHHHHHHTCCCSEEEE-----------EHHHHHHHHHHHHHHHTCCEEEECSSC T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEE-----------CCCCHHHHHHHHHHHCCCCEEEECCCC T ss_conf 65788865327899999842799559998-----------774227899887650488525421454 No 12 >>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} (A:1-173,A:358-374) Probab=92.36 E-value=0.28 Score=28.06 Aligned_cols=87 Identities=8% Similarity=0.161 Sum_probs=47.5 Q ss_pred CEEEEECCCCCCCHH----HHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHH Q ss_conf 926882689868856----9999999985489199981799856503202248970588971104763272799999998 Q gi|255764489|r 1 MRILLTNDDGIKSKG----LITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIAL 76 (250) Q Consensus 1 m~ILitNDDG~~a~g----l~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l 76 (250) ||||+..+.-...-| +..|.+.|.+.||+|.++++..+..-. ..++...+......-....--...... T Consensus 1 MkIl~i~~~~~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~ 73 (190) T 2iw1_A 1 MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCP-------KAFELIQVPVKSHTNHGRNAEYYAWVQ 73 (190) T ss_dssp -CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESEECSCCC-------TTCEEEECCCCCSSHHHHHHHHHHHHH T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-------CCEEEEECCCCCCCCCHHHHHHHHHHH T ss_conf 9899993777999989999999999999779969999667887888-------862899878645353111578999999 Q ss_pred HHCCCCCCCEEEECCCCC Q ss_conf 750464541999714888 Q gi|255764489|r 77 QKMSDKKPDLILSGVNVG 94 (250) Q Consensus 77 ~~l~~~~pDlViSGiN~G 94 (250) ..+...+||+|.+--... T Consensus 74 ~~~~~~~~Div~~~~~~~ 91 (190) T 2iw1_A 74 NHLKEHPADRVVGFNKMP 91 (190) T ss_dssp HHHHHSCCSEEEESSCCT T ss_pred HHHHHCCCCEEEEECCCC T ss_conf 999855775699730432 No 13 >>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding; HET: ADP; 2.30A {Agrobacterium tumefaciens} (A:1-259,A:460-485) Probab=92.31 E-value=0.14 Score=29.94 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=30.3 Q ss_pred CEEEEECCCCCC---CHH----HHHHHHHHHHCCCCEEEECCCCCC Q ss_conf 926882689868---856----999999998548919998179985 Q gi|255764489|r 1 MRILLTNDDGIK---SKG----LITLENIARSISDDIWICAPEMDQ 39 (250) Q Consensus 1 m~ILitNDDG~~---a~g----l~~l~~~l~~~~~~v~vvAP~~~~ 39 (250) ||||+.+.-=.- ..| ...|.++|++.||+|.|+.|.-.. T Consensus 1 MkIl~vs~e~~P~~k~GGl~~~v~~La~~L~~~GheV~Vit~~~~~ 46 (285) T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPA 46 (285) T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHH T ss_pred CEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 9899998866061135779999999999999869969999669875 No 14 >>1rrv_A Glycosyltransferase GTFD; GT-B, rossmann fold; HET: DVV TYD; 2.00A {Amycolatopsis orientalis} (A:1-221,A:381-416) Probab=91.06 E-value=0.11 Score=30.55 Aligned_cols=113 Identities=12% Similarity=0.058 Sum_probs=57.7 Q ss_pred CEEEEECCCCC-CCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEE-E---CCCCCEEEEEE-EEEE---EEECCCHHHH Q ss_conf 92688268986-8856999999998548919998179985650320-2---24897058897-1104---7632727999 Q gi|255764489|r 1 MRILLTNDDGI-KSKGLITLENIARSISDDIWICAPEMDQSCLANS-L---TMSRNIACRTI-SKKR---FAVHGTPVDC 71 (250) Q Consensus 1 m~ILitNDDG~-~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~a-i---t~~~~~~~~~~-~~~~---~~v~GtPaDc 71 (250) ||||+.-=-+. +-.-+..|+++|++.||+|+++.+...++-.... + .+......... .... ....-.+.+. T Consensus 1 MrILl~p~~~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (257) T 1rrv_A 1 MRVLLSVCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAEVGVPHVPVGLPQHMMLQEGMPPPPPEEEQRLAAMT 80 (257) T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEECSCCGGGCCCTTSCCCCHHHHHHHHHHH T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCEEEECCCCHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 95999889876789999999999998899899996856777898779759986872665124552023357899879999 Q ss_pred HHHH---HHHCCC--CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 9999---875046--454199971488853102333457778998898718985322200 Q gi|255764489|r 72 VVIA---LQKMSD--KKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQA 126 (250) Q Consensus 72 v~~~---l~~l~~--~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~ 126 (250) ...- +..+.. .++|+||++ .=+..+..-|..+|||.+.++.. T Consensus 81 ~~~~~~~~~~l~~~~~~~d~vi~d-------------~~~~~~~~vA~~~gIP~v~~~~~ 127 (257) T 1rrv_A 81 VEMQFDAVPGAAEGCAAVVAVGDL-------------AAATGVRSVAEKLGLPFFYSVPS 127 (257) T ss_dssp HHHHHHHHHHHTTTCSEEEEEECH-------------HHHHHHHHHHHHHTCCEEEEESS T ss_pred HHHHHHHHHHHHHCCCCEEEEEEC-------------CHHHHHHHHHHHHHCCCCCCCCC T ss_conf 999999999998438980999968-------------31569999999852033433456 No 15 >>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A (A:1-259,A:461-485) Probab=90.85 E-value=0.25 Score=28.29 Aligned_cols=112 Identities=14% Similarity=0.087 Sum_probs=63.2 Q ss_pred CEEEEECCCCC---CCHH----HHHHHHHHHHCCCCEEEECCCCCCCCEE-----EEEC---CCCCEEEEEE---EEEEE Q ss_conf 92688268986---8856----9999999985489199981799856503-----2022---4897058897---11047 Q gi|255764489|r 1 MRILLTNDDGI---KSKG----LITLENIARSISDDIWICAPEMDQSCLA-----NSLT---MSRNIACRTI---SKKRF 62 (250) Q Consensus 1 m~ILitNDDG~---~a~g----l~~l~~~l~~~~~~v~vvAP~~~~S~~~-----~ait---~~~~~~~~~~---~~~~~ 62 (250) ||||+-+..-. ...| ...|+++|++.||+|.|++|....---. .... .....++.+. +...| T Consensus 1 MkIL~is~e~~P~~~~GG~~~~v~~La~~L~~~Gh~V~V~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 80 (284) T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVTDAQVVSRRDTFAGHITLLFGHYNGVGIY 80 (284) T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEECCHHHHHHCTTCEEEEEECCTTCCEEEEEEEETTEEEE T ss_pred CEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHCCCCCEEEEEEECCCEEEEEEEEEECCCEEE T ss_conf 98999977362655566199999999999997699699997898561134677558889714773788999998895599 Q ss_pred E------------------ECCCHHHHHHHHHHH------C----CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 6------------------327279999999875------0----46454199971488853102333457778998898 Q gi|255764489|r 63 A------------------VHGTPVDCVVIALQK------M----SDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGS 114 (250) Q Consensus 63 ~------------------v~GtPaDcv~~~l~~------l----~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~ 114 (250) . ..+....+..+++.. + ...+||+|-+ .-.+++-+++...+. T Consensus 81 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDVIH~----------h~~~~~~~~~~~~~~ 150 (284) T 2qzs_A 81 LIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHA----------HDWHAGLAPAYLAAR 150 (284) T ss_dssp EEECHHHHCCSSCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSSTTCCCSEEEE----------ETGGGTTHHHHHHHT T ss_pred EECCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE----------CCCHHHHHHHHHHCC T ss_conf 9458355137787677854455411577888875555555431134678868996----------460576667887334 Q ss_pred HHCCCCCC Q ss_conf 71898532 Q gi|255764489|r 115 LQGIRSFA 122 (250) Q Consensus 115 ~~GipsIA 122 (250) ..++|-+- T Consensus 151 ~~~ip~V~ 158 (284) T 2qzs_A 151 GRPAKSVF 158 (284) T ss_dssp TCSSEEEE T ss_pred CCCCCEEE T ss_conf 67777899 No 16 >>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} (A:1-191,A:370-394) Probab=89.89 E-value=1.4 Score=23.75 Aligned_cols=112 Identities=11% Similarity=0.112 Sum_probs=58.9 Q ss_pred CEEEEECCCCCC--CHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHH--HHHHHH Q ss_conf 926882689868--8569999999985489199981799856503202248970588971104763272799--999998 Q gi|255764489|r 1 MRILLTNDDGIK--SKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVD--CVVIAL 76 (250) Q Consensus 1 m~ILitNDDG~~--a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaD--cv~~~l 76 (250) |||+++--..+. +--+..|++.|.+.||+|.|++|.....-.. ....+.+..+....+-.-..+.- .....+ T Consensus 16 mkI~~v~~p~~GG~~~~~~~la~~L~~~G~eV~vit~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l 91 (216) T 2jjm_A 16 LKIGITCYPSVGGSGVVGTELGKQLAERGHEIHFITSGLPFRLNK----VYPNIYFHEVTVNQYSVFQYPPYDLALASKM 91 (216) T ss_dssp CEEEEECCC--CHHHHHHHHHHHHHHHTTCEEEEECSSCC----C----CCTTEEEECCCCC----CCSCCHHHHHHHHH T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC----CCCCCEEEEECCCCCCCCCCCHHHHHHHHHH T ss_conf 779998999999699999999999997799899994799864211----3797069970456666101560358999999 Q ss_pred HH-CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHH--HCCCCCCCCCC Q ss_conf 75-0464541999714888531023334577789988987--18985322200 Q gi|255764489|r 77 QK-MSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSL--QGIRSFALSQA 126 (250) Q Consensus 77 ~~-l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~--~GipsIAiS~~ 126 (250) .. +...+||+|.+- . .++....|.+-..+ .++|-+.-... T Consensus 92 ~~~i~~~~~DiIh~h-----~-----~~~~~~~~~l~~~~~~~~ip~v~~~h~ 134 (216) T 2jjm_A 92 AEVAQRENLDILHVH-----Y-----AIPHAICAYLAKQMIGERIKIVTTLHG 134 (216) T ss_dssp HHHHHHHTCSEEEEC-----S-----STTHHHHHHHHHHHTTTCSEEEEECCH T ss_pred HHHHHHHCCCEEEEC-----C-----CCCHHHHHHHHHHHHCCCCCEEEEECC T ss_conf 999887098489832-----4-----331168999998750567733553112 No 17 >>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthase, two rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} PDB: 2bis_A* (A:1-226,A:415-439) Probab=89.04 E-value=0.64 Score=25.83 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=31.9 Q ss_pred CEEEEECCCCCC--CHH----HHHHHHHHHHCCCCEEEECCCCCCCCEE Q ss_conf 926882689868--856----9999999985489199981799856503 Q gi|255764489|r 1 MRILLTNDDGIK--SKG----LITLENIARSISDDIWICAPEMDQSCLA 43 (250) Q Consensus 1 m~ILitNDDG~~--a~g----l~~l~~~l~~~~~~v~vvAP~~~~S~~~ 43 (250) ||||+-+..-.- ..| ...|.++|.+.||+|.|++|+....... T Consensus 3 MkIl~i~~~~pp~~~GG~~~~~~~L~~~L~~~Gh~V~v~t~~~~~~~~~ 51 (251) T 3fro_A 3 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGE 51 (251) T ss_dssp CEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCE T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHH T ss_conf 0899988856974568799999999999997699899991589865544 No 18 >>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} (A:1-222,A:386-430) Probab=88.10 E-value=0.24 Score=28.40 Aligned_cols=113 Identities=13% Similarity=0.062 Sum_probs=60.9 Q ss_pred CEEEEECCCCC-CCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCC--EEEEEEEEEEEEECCCHHH------- Q ss_conf 92688268986-8856999999998548919998179985650320224897--0588971104763272799------- Q gi|255764489|r 1 MRILLTNDDGI-KSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRN--IACRTISKKRFAVHGTPVD------- 70 (250) Q Consensus 1 m~ILitNDDG~-~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~--~~~~~~~~~~~~v~GtPaD------- 70 (250) ||||+.-=-|. +---+..|++.|.+.||+|+++.|...++-....-.-..+ ..+.........-.+.+.+ T Consensus 8 ~~Illv~~p~~GHi~P~l~LA~~L~~rGh~Vt~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (267) T 2iyf_A 8 AHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGPRPVLYHSTLPGPDADPEAWGSTLLDNVEPFLN 87 (267) T ss_dssp CEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHTTSCEEEECCCCSCCTTSCGGGGCSSHHHHHHHHHH T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 88999388526389999999999997899899996810666788669857883577873223513456678999999999 Q ss_pred ----HHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf ----99999875046454199971488853102333457778998898718985322200 Q gi|255764489|r 71 ----CVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQA 126 (250) Q Consensus 71 ----cv~~~l~~l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~ 126 (250) ++.-.+..+.+.+||+||+... ..++..-|..+|||.+.++.. T Consensus 88 ~~~~~~~~l~~~l~~~~~d~Iv~d~~-------------~~~~~~vA~~l~IP~v~~~~~ 134 (267) T 2iyf_A 88 DAIQALPQLADAYADDIPDLVLHDIT-------------SYPARVLARRWGVPAVSLSPN 134 (267) T ss_dssp HHHHHHHHHHHHHTTSCCSEEEEETT-------------CHHHHHHHHHHTCCEEEEESS T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCC-------------CCHHHHHHHHCCCCEEEECCC T ss_conf 99999999999985559829997575-------------406788999829998995056 No 19 >>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A (A:1-192,A:357-375) Probab=85.38 E-value=2.8 Score=21.93 Aligned_cols=118 Identities=13% Similarity=0.044 Sum_probs=62.6 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEE--EECCCCCEEEEEE--EEEEEEECCCHHHHHHHHH Q ss_conf 92688268986885699999999854891999817998565032--0224897058897--1104763272799999998 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLAN--SLTMSRNIACRTI--SKKRFAVHGTPVDCVVIAL 76 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~--ait~~~~~~~~~~--~~~~~~v~GtPaDcv~~~l 76 (250) ||||+.-..-=+.--...|.++|++.++++.+..-...++.... .+..........+ ........-.|.++..-.. T Consensus 9 ~kIli~ags~g~~~~~~~li~~L~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (211) T 3beo_A 9 LKVMTIFGTRPEAIKMAPLVLELQKHPEKIESIVTVTAQHRQMLDQVLSIFGITPDFDLNIMKDRQTLIDITTRGLEGLD 88 (211) T ss_dssp EEEEEEECSHHHHHHHHHHHHHHTTCTTTEEEEEEECCSSSHHHHHHHHHHTCCCSEECCCCCTTCCHHHHHHHHHHHHH T ss_pred CEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHH T ss_conf 56999997267299999999999838789888999916878999999997199988111058899779999999999889 Q ss_pred HHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 7504645419997148885310233345777899889871898532220013 Q gi|255764489|r 77 QKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAYT 128 (250) Q Consensus 77 ~~l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~~ 128 (250) ..+...+||+|+..=.... ++.+++.|..+|||-+-+.+... T Consensus 89 ~~l~~~kPD~V~v~~~~~~----------~l~~~laA~~~~IPvv~~~~~~~ 130 (211) T 3beo_A 89 KVMKEAKPDIVLVHGDTTT----------TFIASLAAFYNQIPVGHVEAGLR 130 (211) T ss_dssp HHHHHHCCSEEEEETTSHH----------HHHHHHHHHHTTCCEEEESCCCC T ss_pred HHHHHCCCCEEEEECCCCC----------CHHHHHHHHHCCCEEEEEECCCC T ss_conf 9887447550442014564----------20158888730631799852455 No 20 >>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent enzyme, lyase, cytoplasm, acid resistance; HET: LLP; 2.4A {Escherichia coli} (A:1-139) Probab=84.22 E-value=2.3 Score=22.37 Aligned_cols=88 Identities=10% Similarity=0.137 Sum_probs=55.9 Q ss_pred CEEEEECCCCCCCH-----HHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHH Q ss_conf 92688268986885-----6999999998548919998179985650320224897058897110476327279999999 Q gi|255764489|r 1 MRILLTNDDGIKSK-----GLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIA 75 (250) Q Consensus 1 m~ILitNDDG~~a~-----gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~ 75 (250) ||||+..||-.... .++.|.+.++..|++|..+ .+ . .-| T Consensus 1 mrILiVDD~~~~~~~~~~~~~~~l~~~L~~~g~~v~~a-~s-------------------------------~----~~a 44 (139) T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKS-TS-------------------------------F----DDG 44 (139) T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEE-SS-------------------------------H----HHH T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE-CC-------------------------------H----HHH T ss_conf 96999925455767401157999999998689189984-87-------------------------------8----999 Q ss_pred HHHCCC-CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 875046-454199971488853102333457778998898718985322200 Q gi|255764489|r 76 LQKMSD-KKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQA 126 (250) Q Consensus 76 l~~l~~-~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~ 126 (250) +..+.. .+||+||.-++...--|.+.. -.+=.........+|-|.+|-. T Consensus 45 l~~l~~~~~~DliilD~~mP~~dG~e~~--~~l~~~~~~~~~~iPii~lt~~ 94 (139) T 2vyc_A 45 FAILSSNEAIDCLMFSYQMEHPDEHQNV--RQLIGKLHERQQNVPVFLLGDR 94 (139) T ss_dssp HHHHTTTCCCSEEEEECCCCSHHHHHHH--HHHHHHHHHHSTTCCEEEEECH T ss_pred HHHHHHCCCCCEEEEEECCCCCCCCHHH--HHHHHHHHHHCCCCCEEEEECC T ss_conf 9999757787689997047784200459--9999999973889998999556 No 21 >>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* (A:1-154,A:320-342) Probab=83.80 E-value=2.9 Score=21.81 Aligned_cols=93 Identities=9% Similarity=0.025 Sum_probs=53.6 Q ss_pred CEEEEECCCCCCC-------------HHH----HHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEE Q ss_conf 9268826898688-------------569----99999998548919998179985650320224897058897110476 Q gi|255764489|r 1 MRILLTNDDGIKS-------------KGL----ITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFA 63 (250) Q Consensus 1 m~ILitNDDG~~a-------------~gl----~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~ 63 (250) ||||.-++..... -|+ ..|++.|.+.|++|+|++|...+.-...- ....-.+ T Consensus 4 MrIl~i~~~~~~~~~~i~~~~~~~~~GG~e~~v~~L~~~L~~~G~ev~v~~~~~~~~~~~~~----------~~~~~~~- 72 (177) T 2iuy_A 4 LKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLXDGLLELGHEVFLLGAPGSPAGRPGL----------TVVPAGE- 72 (177) T ss_dssp CEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCSTTE----------EECSCCS- T ss_pred CEEEEECCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC----------EECCCCH- T ss_conf 37999866656777776757989998829999999999999769989999579986667763----------0068541- Q ss_pred ECCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 327279999999875046454199971488853102333457778998898718985322200 Q gi|255764489|r 64 VHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQA 126 (250) Q Consensus 64 v~GtPaDcv~~~l~~l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~ 126 (250) ..-....+...+||+|-+.--...-. -+...|+|-|..... T Consensus 73 --------~~~l~~~i~~~~pDIVH~h~~~~~~~--------------~a~~~~~p~V~t~H~ 113 (177) T 2iuy_A 73 --------PEEIERWLRTADVDVVHDHSGGVIGP--------------AGLPPGTAFISSHHF 113 (177) T ss_dssp --------HHHHHHHHHHCCCSEEEECSSSSSCS--------------TTCCTTCEEEEEECS T ss_pred --------HHHHHHHHHHCCCCEEEECCCCHHHH--------------HHHCCCCEEEEEECC T ss_conf --------99999999876998999877310448--------------984559728998324 No 22 >>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* (A:1-232,A:393-413) Probab=77.59 E-value=1.7 Score=23.20 Aligned_cols=40 Identities=13% Similarity=-0.005 Sum_probs=27.7 Q ss_pred CEEEEECCC-CCC--CHHHH---HHHHHHHHCCCCEEEECCCCCCC Q ss_conf 926882689-868--85699---99999985489199981799856 Q gi|255764489|r 1 MRILLTNDD-GIK--SKGLI---TLENIARSISDDIWICAPEMDQS 40 (250) Q Consensus 1 m~ILitNDD-G~~--a~gl~---~l~~~l~~~~~~v~vvAP~~~~S 40 (250) ||||+..+- ... .-|.+ .|++.|.+.||+|.|+++..... T Consensus 47 MkIl~v~~~~~p~~~gGg~~~~~~La~~L~~~GheV~vit~~~~~~ 92 (253) T 2x0d_A 47 KRLNLLVPSINQEHXFGGISTALKLFEQFDNKKFKKRIILTDATPN 92 (253) T ss_dssp CEEEEEESCCCGGGCSHHHHHHHHHHTTSCTTTCEEEEEESSCCCC T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 7799996728999888789999999999997799889998279997 No 23 >>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} (D:12-112) Probab=75.54 E-value=4.3 Score=20.77 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=25.6 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECC Q ss_conf 92688268986885699999999854891999817 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAP 35 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP 35 (250) |||||..||... .+.+.+.|+..|++|..+.. T Consensus 2 ~rILiVdD~~~~---~~~l~~~L~~~g~~v~~a~~ 33 (101) T 1qo0_D 2 LQVLVLNPPGEV---SDALVLQLIRIGCSVRQCWP 33 (101) T ss_dssp CEEEEESCTTHH---HHHHHHHHHHHTCEEEEECS T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEECCCC T ss_conf 869999678989---99999999987997762699 No 24 >>1p80_A Catalase HPII; beta barrel, channel, variant, oxidoreductase; HET: HEM; 1.65A {Escherichia coli} (A:582-753) Probab=71.29 E-value=2.4 Score=22.33 Aligned_cols=47 Identities=9% Similarity=0.150 Sum_probs=39.6 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECC Q ss_conf 26882689868856999999998548919998179985650320224 Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTM 48 (250) Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~ 48 (250) ||++---||++...+..+.++++..+++|.+++|+...--.+..+++ T Consensus 21 ~v~ill~~g~~~~e~~~~~~~l~~a~~~v~~vs~~~~~v~~~~g~~v 67 (172) T 1p80_A 21 VVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVL 67 (172) T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEE T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCEECCCCCEE T ss_conf 79999678878899999999999779937998136564565899672 No 25 >>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A* 1pn3_A* 1pnv_A* (A:1-205,A:366-404) Probab=70.61 E-value=2.3 Score=22.37 Aligned_cols=113 Identities=13% Similarity=0.044 Sum_probs=60.3 Q ss_pred CEEEEECCCCC-CCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEE----CCCCCEEE-EE-EEE----EEEEECCCHH Q ss_conf 92688268986-88569999999985489199981799856503202----24897058-89-711----0476327279 Q gi|255764489|r 1 MRILLTNDDGI-KSKGLITLENIARSISDDIWICAPEMDQSCLANSL----TMSRNIAC-RT-ISK----KRFAVHGTPV 69 (250) Q Consensus 1 m~ILitNDDG~-~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ai----t~~~~~~~-~~-~~~----~~~~v~GtPa 69 (250) ||||+..=-+. +-.-+..|+++|.+.||+|+++.+....+-....- ++..++.. .. ... ........-. T Consensus 1 MrIll~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~~~~~~~~~v~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (244) T 3h4t_A 1 MGVLITGCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVVTEVVA 80 (244) T ss_dssp -CEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEECGGGHHHHHHTTCCEEECSSCSSGGGSCTTCCCTTCGGGHHHHHH T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCEEEECCCCHHHHHHCHHHHHHHHHHHHHHHHH T ss_conf 96999915883479999999999998799899997824778998779848987825887735966666899999999999 Q ss_pred HHHHHHHHHCC-CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 99999987504-6454199971488853102333457778998898718985322200 Q gi|255764489|r 70 DCVVIALQKMS-DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQA 126 (250) Q Consensus 70 Dcv~~~l~~l~-~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~ 126 (250) .+...-+..+. ..++|+||+. .-...|..-|..+|||.+.++.. T Consensus 81 ~~~~~~~~~~~~~~~~~~vi~d-------------~~~~~a~~vA~~lgIP~v~~~~~ 125 (244) T 3h4t_A 81 EWFDKVPAAIEGCDAVVTTGLL-------------PAAVAVRSMAEKLGIPYRYTVLS 125 (244) T ss_dssp HHHHHHHHHHTTCSEEEEEECH-------------HHHHHHHHHHHHHTCCEEEEESS T ss_pred HHHHHHHHHHCCCCEEEECCCC-------------HHHHHHHHHHHHHCCCEEECCCC T ss_conf 9999999874599999999863-------------37889999999819984630457 No 26 >>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} (A:1-125) Probab=65.78 E-value=6.6 Score=19.61 Aligned_cols=73 Identities=10% Similarity=0.170 Sum_probs=49.2 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) |||||-+.-+.. +.|.+++++.|.+|.++.|..+..+...+ ++.+.++=+..|-+.--- . T Consensus 12 kkilIiG~G~~~----~~l~~~a~~~g~~~~~~~~~~~~~~~~~a-------------d~~~~~~~~d~~~i~~~a---~ 71 (125) T 1kjq_A 12 TRVMLLGSGELG----KEVAIECQRLGVEVIAVDRYADAPAMHVA-------------HRSHVINMLDGDALRRVV---E 71 (125) T ss_dssp CEEEEESCSHHH----HHHHHHHHTTTCEEEEEESSTTCGGGGGS-------------SEEEECCTTCHHHHHHHH---H T ss_pred CEEEEECCCHHH----HHHHHHHHHCCCEEEEEECCCCCCHHHHC-------------CEEEECCCCCHHHHHHHH---H T ss_conf 899998978999----99999999879989999799998267625-------------506871788999999999---9 Q ss_pred CCCCCEEEECCCC Q ss_conf 6454199971488 Q gi|255764489|r 81 DKKPDLILSGVNV 93 (250) Q Consensus 81 ~~~pDlViSGiN~ 93 (250) ...+|.|++|.-+ T Consensus 72 ~~~vd~v~~~~~~ 84 (125) T 1kjq_A 72 LEKPHYIVPEIEA 84 (125) T ss_dssp HHCCSEEEECSSC T ss_pred HHCCCEEECCCCC T ss_conf 8399999827762 No 27 >>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} (A:1-245,A:408-424) Probab=64.92 E-value=7.5 Score=19.30 Aligned_cols=110 Identities=15% Similarity=0.086 Sum_probs=57.9 Q ss_pred CEEEEECCCCC-CCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEE-EC---CCCCEEEEEEEEEEEEECCCHHH----- Q ss_conf 92688268986-8856999999998548919998179985650320-22---48970588971104763272799----- Q gi|255764489|r 1 MRILLTNDDGI-KSKGLITLENIARSISDDIWICAPEMDQSCLANS-LT---MSRNIACRTISKKRFAVHGTPVD----- 70 (250) Q Consensus 1 m~ILitNDDG~-~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~a-it---~~~~~~~~~~~~~~~~v~GtPaD----- 70 (250) ||||+..--+. +---+..|+++|.+.||+|+++.|.....-..+. ++ +..+.. ..............+ T Consensus 13 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 90 (262) T 2iya_A 13 RHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKAAGATPVVYDSILP--KESNPEESWPEDQESAMGLF 90 (262) T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCEEEECCCCSC--CTTCTTCCCCSSHHHHHHHH T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCEEEECCCCCC--CCCCCCCCCHHHHHHHHHHH T ss_conf 9489989861637999999999999789989999682166678756985661177663--10132223504578999999 Q ss_pred -----HHHHHHHH-CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf -----99999875-04645419997148885310233345777899889871898532220 Q gi|255764489|r 71 -----CVVIALQK-MSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250) Q Consensus 71 -----cv~~~l~~-l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250) -....+.. +...+||+||+....+. +..-|..+|||.+.++. T Consensus 91 ~~~~~~~~~~~~~~~~~~~~d~ii~d~~~~~-------------~~~vA~~~giP~v~~~~ 138 (262) T 2iya_A 91 LDEAVRVLPQLEDAYADDRPDLIVYDIASWP-------------APVLGRKWDIPFVQLSP 138 (262) T ss_dssp HHHHHHHHHHHHHHTTTSCCSEEEEETTCTH-------------HHHHHHHHTCCEEEEES T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECCCCHH-------------HHHHHHHHHCCEEEEEC T ss_conf 9999999999999984469838951332216-------------99999985145489841 No 28 >>3d0r_A Protein CALG3; calicheamicin synthesis, glycosyltransferase, enediyne antibiotic; HET: PE4; 1.90A {Micromonospora echinospora} PDB: 3d0q_A* (A:1-222,A:384-398) Probab=64.48 E-value=8.9 Score=18.82 Aligned_cols=112 Identities=17% Similarity=0.177 Sum_probs=59.9 Q ss_pred CEEEEECC--CCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCC---CCEEEEEEE---------------EE Q ss_conf 92688268--98688569999999985489199981799856503202248---970588971---------------10 Q gi|255764489|r 1 MRILLTND--DGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMS---RNIACRTIS---------------KK 60 (250) Q Consensus 1 m~ILitND--DG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~---~~~~~~~~~---------------~~ 60 (250) ||||+.-= -|- ---+..|+++|.+.||+|+++.|..........++.. ......... .. T Consensus 21 ~~Il~~p~~~~GH-~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (237) T 3d0r_A 21 MRVLFVSSPGIGH-LFPLIQLAWGFRTAGHDVLIAVAEHADRAAAAGLEVVDVAPDYSAVKVFEQVAKDNPRFAETVATR 99 (237) T ss_dssp CEEEEECCSSTTS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHTBTCEEEESCTTCCHHHHHHHHHHHCHHHHHTGGGS T ss_pred EEEEEECCCCCCH-HHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCHHHHHCCC T ss_conf 7999965897420-458899876111468616764032100466458557750686278999999850483066552257 Q ss_pred ----EEEECCCHHHHHHH---HHHH-CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf ----47632727999999---9875-046454199971488853102333457778998898718985322200 Q gi|255764489|r 61 ----RFAVHGTPVDCVVI---ALQK-MSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQA 126 (250) Q Consensus 61 ----~~~v~GtPaDcv~~---~l~~-l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~ 126 (250) .+..-..-.+...- .+.. +...+||+||+.... . .|..-|..+|||.+.++.. T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~vI~D~~~----------~---~~~~vA~~lgiP~v~~~~~ 160 (237) T 3d0r_A 100 PAIDLEEWGVQIAAVNRPLVDGTMALVDDYRPDLVVYEQGA----------T---VGLLAADRAGVPAVQRNQS 160 (237) T ss_dssp CCSCSGGGHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTC----------H---HHHHHHHHHTCCEEEECCS T ss_pred CCCCHHHHCEEEEECCCCCCCCEEEHHCCCCCCEEEEECCC----------E---EEEEECCCCCCCHHHCCHH T ss_conf 65367884404334157454660120105678658984486----------4---5554124458834430457 No 29 >>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} (A:) Probab=56.97 E-value=11 Score=18.20 Aligned_cols=41 Identities=20% Similarity=0.146 Sum_probs=31.2 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEE Q ss_conf 92688268986885699999999854891999817998565032 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLAN 44 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ 44 (250) ||||||=--|+=.. .|++.|.+.||+|.+..........-. T Consensus 1 MkIlVtGatGfIG~---~l~~~L~~~G~~v~~~~r~~~~~~~~~ 41 (273) T 2ggs_A 1 MRTLITGASGQLGI---ELSRLLSERHEVIKVYNSSEIQGGYKL 41 (273) T ss_dssp CCEEEETTTSHHHH---HHHHHHTTTSCEEEEESSSCCTTCEEC T ss_pred CEEEEECCCCHHHH---HHHHHHHCCCCEEEEECCCCCCCCEEE T ss_conf 98999899988999---999999729989999778766775156 No 30 >>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, symmetric dimer, signaling protein; NMR {Helicobacter pylori J99} (A:1-99) Probab=56.66 E-value=7.6 Score=19.25 Aligned_cols=31 Identities=16% Similarity=0.042 Sum_probs=23.1 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEC Q ss_conf 9268826898688569999999985489199981 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICA 34 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvA 34 (250) |||||.-||--. -+.+.+.|+..|++|.++. T Consensus 1 mrILiVeDd~~~---~~~i~~~L~~~g~~v~~a~ 31 (99) T 2hqr_A 1 MRVLLIEKNSVL---GGEIEKGLNVKGFMADVTE 31 (99) T ss_dssp CCEEEECSCHHH---HHHHHHHHGGGTCCEEEES T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEEEC T ss_conf 989999579999---9999999998799999989 No 31 >>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* (A:) Probab=53.67 E-value=13 Score=17.91 Aligned_cols=103 Identities=14% Similarity=0.077 Sum_probs=51.6 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) ||||||---|+=.. .|.+.|.+.||+|+++.=.......... .. ...+..+-+-.+...-.+. T Consensus 1 MkVlVtGatG~iG~---~lv~~Ll~~g~~V~~~~~~~~~~~~~~~----~~-------~~~~~~d~~d~~~~~~~~~--- 63 (311) T 2p5y_A 1 MRVLVTGGAGFIGS---HIVEDLLARGLEVAVLDNLATGKRENVP----KG-------VPFFRVDLRDKEGVERAFR--- 63 (311) T ss_dssp CEEEEETTTSHHHH---HHHHHHHTTTCEEEEECCCSSCCGGGSC----TT-------CCEECCCTTCHHHHHHHHH--- T ss_pred CEEEEECCCCHHHH---HHHHHHHHCCCEEEEEECCCCCCHHHHH----CC-------CCEEEEECCCHHHHHHHHH--- T ss_conf 96999888788999---9999999786989999788866764513----37-------9679975558899999997--- Q ss_pred CCCCCEEEECCCCCCC-------CC-HHHHHHHHHHHHHHHHHHCCCC Q ss_conf 6454199971488853-------10-2333457778998898718985 Q gi|255764489|r 81 DKKPDLILSGVNVGTN-------TS-NHVAYSGTLAAAFEGSLQGIRS 120 (250) Q Consensus 81 ~~~pDlViSGiN~G~N-------~g-~~v~ySGTvgAA~ea~~~Gips 120 (250) ..+||.|+--.-.... .. .++...||.-....+.-.+++- T Consensus 64 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~~l~~~~~~~~~~ 111 (311) T 2p5y_A 64 EFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEK 111 (311) T ss_dssp HHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSE T ss_pred HCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCE T ss_conf 423342223233566406665969888846898899999755224330 No 32 >>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} (A:) Probab=51.34 E-value=15 Score=17.45 Aligned_cols=139 Identities=15% Similarity=0.114 Sum_probs=68.7 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEE---CCCCCEEEEEEEEEEEEECCCHHHHHHHHHH Q ss_conf 9268826898688569999999985489199981799856503202---2489705889711047632727999999987 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSL---TMSRNIACRTISKKRFAVHGTPVDCVVIALQ 77 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ai---t~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~ 77 (250) ||||||=--|+=.. .|++.|.+.|++|+++.=..+....-... .....+ ..+.++-+-.+++.-.+. T Consensus 1 MkVLVTGatGfiG~---~lv~~Ll~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~ 70 (338) T 1udb_A 1 MRVLVTGGSGYIGS---HTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHP-------TFVEGDIRNEALMTEILH 70 (338) T ss_dssp CEEEEETTTSHHHH---HHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCC-------EEEECCTTCHHHHHHHHH T ss_pred CEEEEECCCCHHHH---HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCC-------EEEEEECCCHHHHHHHHH T ss_conf 97999898878999---99999997849899997888753656777886147887-------699801789899999874 Q ss_pred HCCCCCCCEEEECCCCCCCCC--------HHHHHHHHHHHHHHHHHHCCCCCCCCCC---CCCC-------------CCC Q ss_conf 504645419997148885310--------2333457778998898718985322200---1356-------------766 Q gi|255764489|r 78 KMSDKKPDLILSGVNVGTNTS--------NHVAYSGTLAAAFEGSLQGIRSFALSQA---YTYE-------------NMI 133 (250) Q Consensus 78 ~l~~~~pDlViSGiN~G~N~g--------~~v~ySGTvgAA~ea~~~GipsIAiS~~---~~~~-------------~~~ 133 (250) ...+|.|+--........ ..+-.-||.-..-.+.-.+++-+-++.. +... ... T Consensus 71 ---~~~~d~v~~~~a~~~~~~~~~~~~~~~~~nv~~t~~ll~~a~~~~~~~~v~~Ss~~~~~~~~~~~~~~e~~~~~~~~ 147 (338) T 1udb_A 71 ---DHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVESFPTGTPQS 147 (338) T ss_dssp ---HTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTSCCCCCSS T ss_pred ---CCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCCCCCCCCCCCC T ss_conf ---16998999898767617577699999875799999999999971987899730006872011334311378899998 Q ss_pred CHHHHHHHHHHHHHHHHHC Q ss_conf 1478888849999999867 Q gi|255764489|r 134 PWEVSETHAPRVLRQLLKT 152 (250) Q Consensus 134 ~~~~a~~~~~~ii~~l~~~ 152 (250) .+..+...+..+++...+. T Consensus 148 ~Y~~sK~~~E~~~~~~~~~ 166 (338) T 1udb_A 148 PYGKSKLMVEQILTDLQKA 166 (338) T ss_dssp HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 7788877546787877764 No 33 >>1gsa_A Glutathione synthetase; ligase; HET: ADP GTT; 2.00A {Escherichia coli B} (A:1-129) Probab=51.02 E-value=10 Score=18.51 Aligned_cols=39 Identities=10% Similarity=-0.031 Sum_probs=27.6 Q ss_pred CEEEEECC--CCCCCHHH--HHHHHHHHHCCCCEEEECCCCCC Q ss_conf 92688268--98688569--99999998548919998179985 Q gi|255764489|r 1 MRILLTND--DGIKSKGL--ITLENIARSISDDIWICAPEMDQ 39 (250) Q Consensus 1 m~ILitND--DG~~a~gl--~~l~~~l~~~~~~v~vvAP~~~~ 39 (250) |||++-=| ++++...= -+|..++++.||+||++-|..=. T Consensus 2 Mki~fvmDpi~~i~~~kDTT~alm~~Aq~RGh~v~~~~~~dL~ 44 (129) T 1gsa_A 2 IKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLY 44 (129) T ss_dssp CEEEEECSCGGGCCTTTCHHHHHHHHHHHTTCEEEEECGGGEE T ss_pred CEEEEEECCHHHCCCCCCHHHHHHHHHHHCCCEEEEEECCCEE T ss_conf 3899993798886988766999999999879979998025569 No 34 >>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix-turn-helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} (A:1-124) Probab=48.19 E-value=19 Score=16.82 Aligned_cols=80 Identities=9% Similarity=0.088 Sum_probs=49.9 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) |||||..||=.. .+.|.+.|++.|++|..++ + ..-|+..+. T Consensus 3 ~kILiVDDd~~~---~~~l~~~L~~~g~~v~~a~--------------------------------~----~~~al~~l~ 43 (124) T 1kgs_A 3 VRVLVVEDERDL---ADLITEALKKEXFTVDVCY--------------------------------D----GEEGXYXAL 43 (124) T ss_dssp CEEEEECSSHHH---HHHHHHHHHHTTCEEEEES--------------------------------S----HHHHHHHHH T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEEEC--------------------------------C----HHHHHHHHH T ss_conf 619999299999---9999999998799999989--------------------------------9----999999997 Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 645419997148885310233345777899889871898532220 Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250) Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250) ..+||+||.-++.-.--|.+++ ..+......+|=|.+|. T Consensus 44 ~~~~dlil~D~~mP~~~G~el~------~~~~~~~~~~pii~lt~ 82 (124) T 1kgs_A 44 NEPFDVVILDIXLPVHDGWEIL------KSXRESGVNTPVLXLTA 82 (124) T ss_dssp HSCCSEEEEESCCSSSCHHHHH------HHHHHTTCCCCEEEEES T ss_pred HCCCCEEEEECCCCCCCCCCHH------HHHHCCCCCCCEEECCC T ss_conf 2899899994677654310101------22111345675320233 No 35 >>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthesis, methyltransferase, transferase; 2.3A {Escherichia coli} (A:) Probab=47.88 E-value=18 Score=16.95 Aligned_cols=33 Identities=15% Similarity=0.056 Sum_probs=24.8 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCC Q ss_conf 926882689868856999999998548919998179 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPE 36 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~ 36 (250) ||||||=--|+=.. .|++.|.+.|++|.++.=. T Consensus 1 MkVLVtGatGfiG~---~lv~~Ll~~g~~v~~~~r~ 33 (345) T 2bll_A 1 MRVLILGVNGFIGN---HLTERLLREDHYEVYGLDI 33 (345) T ss_dssp CEEEEETCSSHHHH---HHHHHHHHSTTCEEEEEES T ss_pred CEEEEECCCCHHHH---HHHHHHHHCCCCEEEEEEC T ss_conf 97999898868999---9999999779988999968 No 36 >>1dcf_A ETR1 protein; beta-alpha five sandwich; 2.50A {Arabidopsis thaliana} (A:) Probab=47.56 E-value=20 Score=16.66 Aligned_cols=60 Identities=7% Similarity=0.236 Sum_probs=39.1 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) |||||..|+-.. .+.+.+.|+..|++|.++. + ..=|+ ..+ T Consensus 8 ~riLvVdd~~~~---~~~~~~~L~~~G~~v~~a~--------------------------------~----~~eAl-~~l 47 (136) T 1dcf_A 8 LKVLVMDENGVS---RMVTKGLLVHLGCEVTTVS--------------------------------S----NEECL-RVV 47 (136) T ss_dssp CEEEEECSCHHH---HHHHHHHHHHTTCEEEEES--------------------------------S----HHHHH-HHC T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEEEC--------------------------------C----HHHHH-HHH T ss_conf 999999599999---9999999998799999989--------------------------------9----99999-976 Q ss_pred CCCCCEEEECCCCCCCCCHH Q ss_conf 64541999714888531023 Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNH 100 (250) Q Consensus 81 ~~~pDlViSGiN~G~N~g~~ 100 (250) .++||+|+-.++.-.--|.+ T Consensus 48 ~~~~dliilD~~lp~~~G~e 67 (136) T 1dcf_A 48 SHEHKVVFMDVCMPGVENYQ 67 (136) T ss_dssp CTTCSEEEEECCSSTTTTTH T ss_pred HCCCCEEEEEECCCCCCHHH T ss_conf 43998538641379986799 No 37 >>2b4a_A BH3024; 10175646, structural genomics, joint center for structural genomics, JCSG, protein structure initiative PSI, unknown function; 2.42A {Bacillus halodurans c-125} (A:) Probab=46.94 E-value=21 Score=16.59 Aligned_cols=80 Identities=11% Similarity=0.145 Sum_probs=46.5 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) |||||.-||-.. .+.+.+.|++.|++|.++. + | .-|+..+. T Consensus 16 ~rILiVdDd~~~---~~~i~~~L~~~g~~v~~a~-~-----------------------------g------~~al~~~~ 56 (138) T 2b4a_A 16 FRVTLVEDEPSH---ATLIQYHLNQLGAEVTVHP-S-----------------------------G------SAFFQHRS 56 (138) T ss_dssp CEEEEECSCHHH---HHHHHHHHHHTTCEEEEES-S-----------------------------H------HHHHHTGG T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEECC-C-----------------------------H------HHHHHHHH T ss_conf 879999699999---9999999998699897449-9-----------------------------9------99999996 Q ss_pred C-CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 6-45419997148885310233345777899889871898532220 Q gi|255764489|r 81 D-KKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250) Q Consensus 81 ~-~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250) . .+|||||.-++...--|.+++ ..+-.....+|=|-+|- T Consensus 57 ~~~~~DliilD~~mP~~~G~el~------~~ir~~~~~~pii~lTa 96 (138) T 2b4a_A 57 QLSTCDLLIVSDQLVDLSIFSLL------DIVKEQTKQPSVLILTT 96 (138) T ss_dssp GGGSCSEEEEETTCTTSCHHHHH------HHHTTSSSCCEEEEEES T ss_pred CCCCCCEEEEECCCCCCCHHHHH------HHHHHCCCCCCEEEEEC T ss_conf 46999799983777788579999------99997099897899988 No 38 >>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} (A:) Probab=46.83 E-value=9.6 Score=18.62 Aligned_cols=81 Identities=14% Similarity=0.094 Sum_probs=49.6 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) |||||..||-.. .+.+.+.|+..|++|..+. + ..-|+..+. T Consensus 4 ~rvLiVdD~~~~---~~~l~~~L~~~G~~v~~a~--------------------------------~----~~eAl~~l~ 44 (127) T 3i42_A 4 QQALIVEDYQAA---AETFKELLEMLGFQADYVM--------------------------------S----GTDALHAMS 44 (127) T ss_dssp EEEEEECSCHHH---HHHHHHHHHHTTEEEEEES--------------------------------S----HHHHHHHHH T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEEEC--------------------------------C----HHHHHHHHH T ss_conf 889999578999---9999999998799999989--------------------------------9----999999998 Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHH--HHHCCCCCCCCCC Q ss_conf 645419997148885310233345777899889--8718985322200 Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEG--SLQGIRSFALSQA 126 (250) Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea--~~~GipsIAiS~~ 126 (250) ..+||+||...+.-.=-|.+++ ..+.. ....+|=|.+|-. T Consensus 45 ~~~~dliilD~~lP~~dG~~l~------~~ir~~~~~~~~pii~~t~~ 86 (127) T 3i42_A 45 TRGYDAVFIDLNLPDTSGLALV------KQLRALPMEKTSKFVAVSGF 86 (127) T ss_dssp HSCCSEEEEESBCSSSBHHHHH------HHHHHSCCSSCCEEEEEECC T ss_pred CCCCCEEEECCCCCCCCHHHHH------HHHHHCCCCCCCEEEEEECC T ss_conf 0899999862789998459999------99984767899949999788 No 39 >>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} (A:1-199,A:355-411) Probab=46.83 E-value=16 Score=17.26 Aligned_cols=125 Identities=13% Similarity=0.147 Sum_probs=59.9 Q ss_pred HHHHHHHHHCCCCEEEEC--CCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHC---CCCCCCEEEECC Q ss_conf 999999985489199981--799856503202248970588971104763272799999998750---464541999714 Q gi|255764489|r 17 ITLENIARSISDDIWICA--PEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKM---SDKKPDLILSGV 91 (250) Q Consensus 17 ~~l~~~l~~~~~~v~vvA--P~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l---~~~~pDlViSGi 91 (250) ..|.+.|.+.|.+|.+++ |-+-|--.-.+ +.+.+..+|+..|-..+--.-.+... .+.+||++|- T Consensus 68 a~L~~tL~a~GAeV~~t~~Np~STqDdvaAa--------L~~~Gi~VfA~~g~t~eey~~~i~~~L~~~d~~P~iiiD-- 137 (256) T 3gvp_A 68 AVLMETLGALGAQCRWAACNIYSTLNEVAAA--------LAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQPNMILD-- 137 (256) T ss_dssp HHHHHHHHHTTCEEEEEESSSSCCCHHHHHH--------HHHHTCCEECCTTCCHHHHHHHHHHHHCBTTBCCSEEEE-- T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCHHHHHH--------HHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEC-- T ss_conf 9999999985987999437976544789999--------986695799708999789999999864258888526862-- Q ss_pred CCCCCCCHHH------HHHHHHHH------------HHHHH-HHCCCCCCCCCCCCC---C-----CCCCHHHHHHHHHH Q ss_conf 8885310233------34577789------------98898-718985322200135---6-----76614788888499 Q gi|255764489|r 92 NVGTNTSNHV------AYSGTLAA------------AFEGS-LQGIRSFALSQAYTY---E-----NMIPWEVSETHAPR 144 (250) Q Consensus 92 N~G~N~g~~v------~ySGTvgA------------A~ea~-~~GipsIAiS~~~~~---~-----~~~~~~~a~~~~~~ 144 (250) .|..+-.-+ +.++-+|+ ||+.. -+.+|.||+-..... + .+..+-....|+.+ T Consensus 138 -DGgdl~~~~h~~~~~l~~~i~G~~EETTTGv~RL~am~~~g~L~fPviaVNDa~tK~~fDNra~~GHP~evMd~SFa~Q 216 (256) T 3gvp_A 138 -DGGDLTHWIYKKYPNMFKKIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLSCSTVPTFVLSITATTQ 216 (256) T ss_dssp -SSSHHHHHHHHHCHHHHHTCCEEEECCHHHHHHHTCC--CCCCCSCEEECTTCHHHHHHHTHHHCCCCHHHHHHHHHHH T ss_pred -CCHHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHCCECCCCCCCCCCCHHHHHH T ss_conf -6512577765406277765201645576489999999976985642799612012103222158999821247879999 Q ss_pred H--HHHHHHC Q ss_conf 9--9999867 Q gi|255764489|r 145 V--LRQLLKT 152 (250) Q Consensus 145 i--i~~l~~~ 152 (250) . ..+|+++ T Consensus 217 ~la~~~l~~~ 226 (256) T 3gvp_A 217 ALALIELYNA 226 (256) T ss_dssp HHHHHHHHHC T ss_pred HHHHHHHHHC T ss_conf 9999999865 No 40 >>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} (B:152-379) Probab=46.83 E-value=19 Score=16.78 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=15.6 Q ss_pred CEEEEE-CCCCCCCHHHHHHHHHHHHCCCCEEEEC Q ss_conf 926882-6898688569999999985489199981 Q gi|255764489|r 1 MRILLT-NDDGIKSKGLITLENIARSISDDIWICA 34 (250) Q Consensus 1 m~ILit-NDDG~~a~gl~~l~~~l~~~~~~v~vvA 34 (250) |||+|- |+||+- ..++++++.+|.++.|+. T Consensus 38 ~~I~iiD~~~g~~----~s~~~~l~~~g~~~~v~~ 68 (228) T 1a9x_B 38 LPFHVVAYDFGAK----RNILRMLVDRGCRLTIVP 68 (228) T ss_dssp CCEEEEEEESSCC----HHHHHHHHHTTEEEEEEE T ss_pred CCCEEEEEECCCH----HHHHHHHHHCCCEEEEEC T ss_conf 8727999960200----567999997798799979 No 41 >>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, midwest center for structural genomics; 1.70A {Agrobacterium tumefaciens str} (A:) Probab=45.67 E-value=11 Score=18.27 Aligned_cols=49 Identities=18% Similarity=0.091 Sum_probs=38.4 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHC-CCCEEEECCCCCCCC--EEEEECCC Q ss_conf 92688268986885699999999854-891999817998565--03202248 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSI-SDDIWICAPEMDQSC--LANSLTMS 49 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~-~~~v~vvAP~~~~S~--~~~ait~~ 49 (250) |||++-==||+..-.+....+.++.. +.+|.+++|+...-- .|..++.. T Consensus 2 MkI~ili~~g~~~~e~~~~~~~l~~a~~~~v~~is~~~~~v~~~~g~~i~~d 53 (188) T 2fex_A 2 TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGXPVTSXGGLKVTPD 53 (188) T ss_dssp CEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECS T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCEEECCEEEEEEC T ss_conf 7999997899119999999999723299099999379980673050899924 No 42 >>2nlz_A Cephalosporin acylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.70A {Bacillus halodurans} (A:470-507) Probab=44.49 E-value=19 Score=16.86 Aligned_cols=20 Identities=10% Similarity=0.126 Sum_probs=16.4 Q ss_pred HHHHHHHHHCCCCEEEECCC Q ss_conf 99999998548919998179 Q gi|255764489|r 17 ITLENIARSISDDIWICAPE 36 (250) Q Consensus 17 ~~l~~~l~~~~~~v~vvAP~ 36 (250) ..++++|+..||+|.|++|. T Consensus 18 ~~i~~~L~~rGH~I~v~~d~ 37 (38) T 2nlz_A 18 VDIAQALVRRGHKIQVVLDE 37 (38) T ss_dssp HHHHHHHHHTTCEEEECCCT T ss_pred HHHHHHHHHCCCEEEECCCC T ss_conf 99999999869913880578 No 43 >>1o1x_A Ribose-5-phosphate isomerase RPIB; TM1080, structural genomics, JCSG, PSI, protein structure initiative; 1.90A {Thermotoga maritima} (A:1-141) Probab=44.03 E-value=23 Score=16.31 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=28.1 Q ss_pred CEEEEECCCC-CCCHHHH-HHHHHHHHCCCCEEEECCCCCCC Q ss_conf 9268826898-6885699-99999985489199981799856 Q gi|255764489|r 1 MRILLTNDDG-IKSKGLI-TLENIARSISDDIWICAPEMDQS 40 (250) Q Consensus 1 m~ILitNDDG-~~a~gl~-~l~~~l~~~~~~v~vvAP~~~~S 40 (250) |||-|-+|.. ++ |+ .|++.|++.|++|.=.-|..+.| T Consensus 13 MkI~igsDhaG~~---lK~~l~~~L~~~g~eV~D~G~~~~~~ 51 (141) T 1o1x_A 13 VKIAIASDHAAFE---LKEKVKNYLLGKGIEVEDHGTYSEES 51 (141) T ss_dssp CEEEEEECSTTHH---HHHHHHHHHHHTTCEEEECCCCSSSC T ss_pred EEEEEEECCHHHH---HHHHHHHHHHHCCCEEEECCCCCCCC T ss_conf 4999973872799---99999999997799899779997787 No 44 >>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} PDB: 3hbj_A* (A:1-253,A:438-454) Probab=43.96 E-value=11 Score=18.23 Aligned_cols=98 Identities=8% Similarity=-0.083 Sum_probs=55.5 Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCEEEEEC---CCCCEEEEEEEEE----EEEECCCHHHHHHHH------------- Q ss_conf 99999999854891999817998565032022---4897058897110----476327279999999------------- Q gi|255764489|r 16 LITLENIARSISDDIWICAPEMDQSCLANSLT---MSRNIACRTISKK----RFAVHGTPVDCVVIA------------- 75 (250) Q Consensus 16 l~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait---~~~~~~~~~~~~~----~~~v~GtPaDcv~~~------------- 75 (250) +..|++.|.+.|++|+++....+++..-.+.. ....+........ .-.-+.-|.++..+- T Consensus 30 ~l~Lak~L~~rG~~Vt~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (270) T 3hbf_A 30 LLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLPNIKYYNVHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDE 109 (270) T ss_dssp HHHHHHHHHHHCTTSEEEEEECHHHHHHSCSSSSCCCTTEEEEECCCCCCTTCCCCSCTTHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999978994799980475204556531556789872766889998644343566789999999988757999999 Q ss_pred HHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 875046454199971488853102333457778998898718985322200 Q gi|255764489|r 76 LQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQA 126 (250) Q Consensus 76 l~~l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~ 126 (250) .......+||+||+-.-.+. |..-|.-+|||++.++-. T Consensus 110 ~~~~~~~~~~~vV~D~~~~w-------------a~~vA~~lgIP~~~f~~~ 147 (270) T 3hbf_A 110 AVAETGKNITCLVTDAFFWF-------------GADLAEEMHAKWVPLWTA 147 (270) T ss_dssp HHHHHCCCCCEEEEETTCTT-------------HHHHHHHTTCEEEEEECS T ss_pred HHHHCCCCCEEEEECCCCHH-------------HHHHHHHCCCCEEEEECC T ss_conf 99723899539995143428-------------999999736881886246 No 45 >>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, dimer; HET: ADP; 2.40A {Aquifex aeolicus} (A:1-139) Probab=43.86 E-value=16 Score=17.30 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=45.1 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) |||||.-||-..+. .+.+.|+..|+.|.++. +| .-|+..+- T Consensus 1 ~~iLiVDD~~~~~~---~l~~~L~~~g~~v~~a~------------------------------~~------~~al~~l~ 41 (139) T 1ny5_A 1 MNVLVIEDDKVFRG---LLEEYLSMKGIKVESAE------------------------------RG------KEAYKLLS 41 (139) T ss_dssp CEEEEECCCHHHHH---HHHHHHHHHTCEEEEES------------------------------SH------HHHHHHHH T ss_pred CEEEEEECCHHHHH---HHHHHHHHCCCEEEEEC------------------------------CH------HHHHHHHH T ss_conf 97999958999999---99999997799999989------------------------------99------99999986 Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 64541999714888531023334577789988987189853222 Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALS 124 (250) Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS 124 (250) ..+||+||.-.+.-..-|.+++ .-+......+|=|.+| T Consensus 42 ~~~~d~iilD~~lP~~~G~el~------~~~~~~~~~~pii~lt 79 (139) T 1ny5_A 42 EKHFNVVLLDLLLPDVNGLEIL------KWIKERSPETEVIVIT 79 (139) T ss_dssp HSCCSEEEEESBCSSSBHHHHH------HHHHHHCTTSEEEEEE T ss_pred CCCCCEEEEECCCCCCCHHHHH------HHHHHCCCCCCEEEEC T ss_conf 1899899982999998999999------9998459998189951 No 46 >>2zkl_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, isomerase; 2.61A {Staphylococcus aureus} (A:1-130) Probab=43.03 E-value=24 Score=16.22 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=27.1 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC Q ss_conf 9268826898688569999999985489199981799856 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQS 40 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S 40 (250) ||||||=--|.=. +.|.+.|.+.|++|.+...+..+- T Consensus 1 MkIlVtGasGfiG---~~lv~~L~~~g~~v~~~~~~~~~~ 37 (130) T 2zkl_A 1 MNIVITGAKGFVG---KNLKADLTSTTDHHIFEVHRQTKE 37 (130) T ss_dssp CEEEEETTTSHHH---HHHHHHHHHHCCCEEEEECTTCCH T ss_pred CEEEEECCCCHHH---HHHHHHHHHCCCEEEEEECCCCCH T ss_conf 9899999997799---999999985799499996798999 No 47 >>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} (A:) Probab=43.02 E-value=24 Score=16.22 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=27.6 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC Q ss_conf 9268826898688569999999985489199981799856 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQS 40 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S 40 (250) ||||||---|+-.. .|++.|.+.||+|+++.=..... T Consensus 5 ~~IlVtGatG~iG~---~lv~~Ll~~g~~V~~~~r~~~~~ 41 (321) T 3c1o_A 5 EKIIIYGGTGYIGK---FMVRASLSFSHPTFIYARPLTPD 41 (321) T ss_dssp CCEEEETTTSTTHH---HHHHHHHHTTCCEEEEECCCCTT T ss_pred CEEEEECCCCHHHH---HHHHHHHHCCCCEEEEECCCCCC T ss_conf 68999899978999---99999996899489998888655 No 48 >>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} (A:) Probab=42.81 E-value=15 Score=17.52 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=26.0 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC Q ss_conf 926882689868856999999998548919998179985 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQ 39 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~ 39 (250) ||||||=--|+=.. .|++.|.+.||+|++..-.... T Consensus 1 MkILVtGatGfiG~---~l~~~L~~~g~~v~~~~r~~~~ 36 (299) T 1n2s_A 1 MNILLFGKTGQVGW---ELQRSLAPVGNLIALDVHSKEF 36 (299) T ss_dssp CEEEEECTTSHHHH---HHHHHTTTTSEEEEECTTCSSS T ss_pred CEEEEECCCCHHHH---HHHHHHHHCCCEEEEECCCCCC T ss_conf 97999899988999---9999998789999997898544 No 49 >>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40} (A:1-65) Probab=41.85 E-value=25 Score=16.11 Aligned_cols=54 Identities=19% Similarity=0.360 Sum_probs=32.9 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) +|||+.-||=.. .+.+.+.|+..|++|.++ .+ ..-|+..+. T Consensus 11 ~~iLiVDD~~~~---~~~~~~~L~~~G~~v~~a-~~-----------------------------------g~~al~~l~ 51 (65) T 3c97_A 11 LSVLIAEDNDIC---RLVAAKALEKCTNDITVV-TN-----------------------------------GLQALQAYQ 51 (65) T ss_dssp CEEEEECCCHHH---HHHHHHHHTTTCSEEEEE-SS-----------------------------------HHHHHHHHH T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEEE-CC-----------------------------------HHHHHHHHH T ss_conf 989999598999---999999999879999998-99-----------------------------------999999998 Q ss_pred CCCCCEEEECCCC Q ss_conf 6454199971488 Q gi|255764489|r 81 DKKPDLILSGVNV 93 (250) Q Consensus 81 ~~~pDlViSGiN~ 93 (250) ..+||+|++-++. T Consensus 52 ~~~~dlil~Di~M 64 (65) T 3c97_A 52 NRQFDVIIMDIQM 64 (65) T ss_dssp HSCCSEEEECTTC T ss_pred HCCCCEEEEEECC T ss_conf 3899889863048 No 50 >>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} (A:1-342) Probab=41.38 E-value=23 Score=16.29 Aligned_cols=111 Identities=12% Similarity=-0.012 Sum_probs=53.3 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) ||||||---|+=.. .|.+.|.+.|++|.++.=................ ......+.++.+=.+.+...+. T Consensus 1 MkVlVTGatGfiG~---~lv~~Ll~~g~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~d~~~~~~~~~--- 70 (342) T 1kew_A 1 MKILITGGAGFIGS---AVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISE----SNRYNFEHADICDSAEITRIFE--- 70 (342) T ss_dssp CEEEEESTTSHHHH---HHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTT----CTTEEEEECCTTCHHHHHHHHH--- T ss_pred CEEEEECCCCHHHH---HHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHH----CCCCEEEECCCCCHHHHHHHHH--- T ss_conf 96999888877999---9999999789968999847986443777876520----6883799865789899999998--- Q ss_pred CCCCCEEEECCCCCCC-C-------CHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 6454199971488853-1-------023334577789988987189853 Q gi|255764489|r 81 DKKPDLILSGVNVGTN-T-------SNHVAYSGTLAAAFEGSLQGIRSF 121 (250) Q Consensus 81 ~~~pDlViSGiN~G~N-~-------g~~v~ySGTvgAA~ea~~~GipsI 121 (250) ..+||.|+--.-...- . -.++-.-||..-.-.+.-.|++-+ T Consensus 71 ~~~~d~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~ 119 (342) T 1kew_A 71 QYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALG 119 (342) T ss_dssp HHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSC T ss_pred HCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 5799999989721676667759999999999999999999998645432 No 51 >>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural genomics, PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} (C:1-117) Probab=40.90 E-value=19 Score=16.83 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=27.6 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC Q ss_conf 9268826898688569999999985489199981799856 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQS 40 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S 40 (250) |||+|. |...-|. .+++.|.+.|++|+++..+.++- T Consensus 1 Mki~Ii---G~G~iG~-~la~~L~~~g~~v~v~~~~~~~~ 36 (117) T 3l4b_C 1 MKVIII---GGETTAY-YLARSMLSRKYGVVIINKDRELC 36 (117) T ss_dssp CCEEEE---CCHHHHH-HHHHHHHHTTCCEEEEESCHHHH T ss_pred CEEEEE---CCCHHHH-HHHHHHHHCCCCEEEEECCHHHH T ss_conf 989999---9889999-99999996899799998999999 No 52 >>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} (A:) Probab=39.63 E-value=27 Score=15.89 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=51.4 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) +||||..||-.. ...|.+.|+..|++|.++.= ..-|+..+. T Consensus 8 ~rvLiVdD~~~~---~~~l~~~L~~~g~~v~~a~~------------------------------------~~~al~~~~ 48 (137) T 3hdg_A 8 LKILIVEDDTDA---REWLSTIISNHFPEVWSAGD------------------------------------GEEGERLFG 48 (137) T ss_dssp CCEEEECSCHHH---HHHHHHHHHTTCSCEEEESS------------------------------------HHHHHHHHH T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEEECC------------------------------------HHHHHHHHH T ss_conf 889999688999---99999999977999999899------------------------------------999999998 Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 645419997148885310233345777899889871898532220 Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250) Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250) ..+|||||.-++...--|.+++ ..+-.....+|-|-+|. T Consensus 49 ~~~~dliilD~~lP~~dG~el~------~~ir~~~~~~piIilt~ 87 (137) T 3hdg_A 49 LHAPDVIITDIRXPKLGGLEXL------DRIKAGGAKPYVIVISA 87 (137) T ss_dssp HHCCSEEEECSSCSSSCHHHHH------HHHHHTTCCCEEEECCC T ss_pred HCCCCEEEEECCCCCCCHHHHH------HHHHHCCCCCCEEEEEC T ss_conf 4788889982457899999999------99995098995899989 No 53 >>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, structural genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 1li4_A* 1a7a_A* (A:1-189,A:347-408) Probab=39.50 E-value=27 Score=15.88 Aligned_cols=126 Identities=15% Similarity=0.178 Sum_probs=60.2 Q ss_pred HHHHHHHHHCCCCEEEEC--CCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHH----HHHHHHHHCC-CCCCCEEEE Q ss_conf 999999985489199981--799856503202248970588971104763272799----9999987504-645419997 Q gi|255764489|r 17 ITLENIARSISDDIWICA--PEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVD----CVVIALQKMS-DKKPDLILS 89 (250) Q Consensus 17 ~~l~~~l~~~~~~v~vvA--P~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaD----cv~~~l~~l~-~~~pDlViS 89 (250) ..|.+.|.+.|.+|.+++ |-+-|--.-.++ .+.+..+|+..|---. |+.-+|.... +.+||++|= T Consensus 57 a~L~~tL~a~GAeV~~t~~Np~STqDdvaAaL--------~~~Gi~VfA~~get~eey~~~i~~~L~~~~~d~~P~iiiD 128 (251) T 3h9u_A 57 AVLIETLVELGAEVRWASCNIFSTQDHAAAAI--------AKRGIPVFAWKGETEEEYMWCMKQTLKGFSGDGYPNMLLD 128 (251) T ss_dssp HHHHHHHHHTTCEEEEECSSTTTCCHHHHHHH--------HHTTCCEEECTTCCHHHHHHHHHHTTSCBTTTBCCSEEEE T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCHHHHHHH--------HHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEE T ss_conf 99999999769989994279764318999998--------7569458986699878999999976413268888259982 Q ss_pred CCCCCCC---------------C-C-HHHHHHHHHH-HHHHHH-HHCCCCCCCCCCCC-------CCCCCCHHHHHHHHH Q ss_conf 1488853---------------1-0-2333457778-998898-71898532220013-------567661478888849 Q gi|255764489|r 90 GVNVGTN---------------T-S-NHVAYSGTLA-AAFEGS-LQGIRSFALSQAYT-------YENMIPWEVSETHAP 143 (250) Q Consensus 90 GiN~G~N---------------~-g-~~v~ySGTvg-AA~ea~-~~GipsIAiS~~~~-------~~~~~~~~~a~~~~~ 143 (250) .|.. + | ..-+.||-.= =||+.. -..+|.||+--... .+.+..+-.+..++. T Consensus 129 ---DGgdl~~~lh~~~~~l~~~i~G~~EETTTGv~RL~am~~~g~L~fPviaVNDs~tK~~fDNca~GHP~~vMd~SFa~ 205 (251) T 3h9u_A 129 ---DGGDLTNYVLDECKELDGKIYGVSEETTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNCASGHPSFVMSNSFCN 205 (251) T ss_dssp ---SSSHHHHHHHHHC-CCTTTCCCEEECSHHHHHHHHHHHHHTCCCSCEEECTTSHHHHTTHHHSCCSCHHHHHHHHHH T ss_pred ---CCCHHHCCCCCCCCCHHHHEEEHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHCCCCCCCCHHHEEHHHHH T ss_conf ---33100111234553101221320116867888887662079601367551340255553026789971522466899 Q ss_pred HH--HHHHHHCC Q ss_conf 99--99998677 Q gi|255764489|r 144 RV--LRQLLKTQ 153 (250) Q Consensus 144 ~i--i~~l~~~~ 153 (250) +. ..+|+++. T Consensus 206 Q~la~~~l~~~~ 217 (251) T 3h9u_A 206 QVLAQIELWTNR 217 (251) T ss_dssp HHHHHHHHHHTT T ss_pred HHHHHHHHHHCC T ss_conf 999999998667 No 54 >>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization, X-RAY crystallography; 1.90A {Clostridium thermocellum} PDB: 3hee_A* (A:1-128) Probab=36.94 E-value=30 Score=15.63 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=28.2 Q ss_pred CEEEEECCCC-CCCHHHH-HHHHHHHHCCCCEEEECCCCCCC Q ss_conf 9268826898-6885699-99999985489199981799856 Q gi|255764489|r 1 MRILLTNDDG-IKSKGLI-TLENIARSISDDIWICAPEMDQS 40 (250) Q Consensus 1 m~ILitNDDG-~~a~gl~-~l~~~l~~~~~~v~vvAP~~~~S 40 (250) |||-+-+|.. ++ |+ .|++.|++.||+|.=+-|.+++| T Consensus 1 MkI~igsDhaG~~---lK~~i~~~L~~~g~eV~D~G~~~~~~ 39 (128) T 3he8_A 1 MKIGIGSDHGGYN---LKREIADFLKKRGYEVIDFGTHGNES 39 (128) T ss_dssp CEEEEEECGGGHH---HHHHHHHHHHHTTCEEEECCCCSSSC T ss_pred CEEEEEECCCHHH---HHHHHHHHHHHCCCEEEECCCCCCCC T ss_conf 9899984774699---99999999998799889669998887 No 55 >>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} (A:) Probab=36.72 E-value=30 Score=15.61 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=31.1 Q ss_pred EEEECC---CCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC Q ss_conf 688268---98688569999999985489199981799856 Q gi|255764489|r 3 ILLTND---DGIKSKGLITLENIARSISDDIWICAPEMDQS 40 (250) Q Consensus 3 ILitND---DG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S 40 (250) ||++|. ||++.--+..-.+.++..|++|.++.|...+- T Consensus 11 ill~~~~~~dG~~~~e~~~p~~~l~~ag~~v~~~s~~g~~~ 51 (232) T 1vhq_A 11 VILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQV 51 (232) T ss_dssp EECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCS T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC T ss_conf 99658988775319899999999998899899994699846 No 56 >>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} (A:) Probab=36.33 E-value=30 Score=15.57 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=25.7 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCC Q ss_conf 9268826898688569999999985489199981799 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEM 37 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~ 37 (250) ||||||---|+=. +.|++.|.+.||+|+++.=.. T Consensus 13 ~~VLItGatGfiG---~~lv~~L~~~g~~v~~~~r~~ 46 (321) T 2pk3_A 13 MRALITGVAGFVG---KYLANHLTEQNVEVFGTSRNN 46 (321) T ss_dssp CEEEEETTTSHHH---HHHHHHHHHTTCEEEEEESCT T ss_pred CEEEEECCCCHHH---HHHHHHHHHCCCEEEEEECCC T ss_conf 5799967888899---999999997849899981887 No 57 >>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} (A:118-254) Probab=35.22 E-value=31 Score=15.48 Aligned_cols=81 Identities=21% Similarity=0.199 Sum_probs=50.4 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) |||||..||-.. .+.+.+.|+..|++|..+ .. ..-|+..+. T Consensus 13 ~~iLiVdd~~~~---~~~l~~~L~~~g~~v~~a-~~-----------------------------------~~~Al~~~~ 53 (137) T 2ayx_A 13 MMILVVDDHPIN---RRLLADQLGSLGYQCKTA-ND-----------------------------------GVDALNVLS 53 (137) T ss_dssp CEEEEEESSHHH---HHHHHHHHHHHTSEEEEE-CC-----------------------------------SHHHHHHHH T ss_pred CEEEEECCCHHH---HHHHHHHHHHCCCEEEEE-CC-----------------------------------HHHHHHHHH T ss_conf 889999198999---999999999879999997-98-----------------------------------799999986 Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 6454199971488853102333457778998898718985322200 Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQA 126 (250) Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~ 126 (250) ...||+||-..+...=-|.+ +...+......+|-|.+|.. T Consensus 54 ~~~~dliilD~~lp~~~G~~------l~~~ir~~~~~~pii~lt~~ 93 (137) T 2ayx_A 54 KNHIDIVLSDVNMPNMDGYR------LTQRIRQLGLTLPVIGVTAN 93 (137) T ss_dssp HSCCSEEEEEESSCSSCCHH------HHHHHHHHHCCSCEEEEESS T ss_pred CCCCCEEEEECCCCCCCCHH------HHHHHHHHCCCCCEEEEECC T ss_conf 28999999807877885669------99999973899978999788 No 58 >>2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase, peptidoglycan deacetylase, metalloenzyme, D275N mutant, hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae} (A:236-431) Probab=35.02 E-value=32 Score=15.45 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=29.1 Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCC--CEEEECCCCCCC Q ss_conf 68826898688569999999985489--199981799856 Q gi|255764489|r 3 ILLTNDDGIKSKGLITLENIARSISD--DIWICAPEMDQS 40 (250) Q Consensus 3 ILitNDDG~~a~gl~~l~~~l~~~~~--~v~vvAP~~~~S 40 (250) |.||=|||+.+.....+.+.|++.|- ..+++.-..++. T Consensus 3 V~lTFDDg~~~~~~~~il~~L~~~gi~atff~~~~~~~~~ 42 (196) T 2c1i_A 3 VALTFNDGPNPATTPQVLETLAKYDIKATFFVLGKNVSGN 42 (196) T ss_dssp EEEEEESCCCTTTHHHHHHHHHHTTCCCEEEECGGGTTTC T ss_pred EEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECHHHHHHC T ss_conf 9998718998574899999999879819999727856479 No 59 >>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} (A:) Probab=34.94 E-value=32 Score=15.44 Aligned_cols=40 Identities=8% Similarity=-0.019 Sum_probs=29.7 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEE Q ss_conf 9268826898688569999999985489199981799856503 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLA 43 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~ 43 (250) ||||||=-=|+-. +.|++.|.+.||+|+...=..++.... T Consensus 3 mkiLItGatGfiG---~~l~~~L~~~g~~V~~~~r~~~~~~~~ 42 (286) T 3gpi_A 3 LSKILIAGCGDLG---LELARRLTAQGHEVTGLRRSAQPMPAG 42 (286) T ss_dssp CCCEEEECCSHHH---HHHHHHHHHTTCCEEEEECTTSCCCTT T ss_pred CCEEEEECCCHHH---HHHHHHHHHCCCEEEEEECCHHHCCCC T ss_conf 8869998921999---999999997859899997871226067 No 60 >>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} (A:1-146) Probab=32.91 E-value=18 Score=17.00 Aligned_cols=78 Identities=8% Similarity=0.058 Sum_probs=36.8 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) |||||..||=.. ...|.+.|+..| .|..++= . ..++.-.++..+--++. ...+-..--+.--+.... T Consensus 3 mrVLiVDDd~~~---~~~l~~~L~~~g-~v~~a~~--g----~eal~~~~~~dliilD~---~mP~~dG~e~~~~lr~~~ 69 (146) T 1p2f_A 3 WKIAVVDDDKNI---LKKVSEKLQQLG-RVKTFLT--G----EDFLNDEEAFHVVVLDV---XLPDYSGYEICRXIKETR 69 (146) T ss_dssp EEEEEECSCHHH---HHHHHHHHTTTE-EEEEESS--H----HHHHHCCSCCSEEEEES---BCSSSBHHHHHHHHHHHC T ss_pred CEEEEEECCHHH---HHHHHHHHHHCC-EEEEECC--H----HHHHHHCCCCCEEEEEC---CCCCCCCHHHHHHHHHCC T ss_conf 879999599999---999999998699-8999879--9----99995279999999958---998887636776545304 Q ss_pred CCCCCEEEECC Q ss_conf 64541999714 Q gi|255764489|r 81 DKKPDLILSGV 91 (250) Q Consensus 81 ~~~pDlViSGi 91 (250) +..|=+++|+. T Consensus 70 ~~~pii~it~~ 80 (146) T 1p2f_A 70 PETWVILLTLL 80 (146) T ss_dssp TTSEEEEEESC T ss_pred CCCCEEEECCC T ss_conf 55745730222 No 61 >>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide complex; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* (A:1-184) Probab=30.77 E-value=37 Score=15.02 Aligned_cols=37 Identities=22% Similarity=0.180 Sum_probs=27.4 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC Q ss_conf 9268826898688569999999985489199981799856 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQS 40 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S 40 (250) ||||||=--|+-. ..|++.|.+.|++|+++.....+- T Consensus 21 ~~VlItGatGfiG---~~lv~~L~~~g~~v~~~~~~~~~~ 57 (184) T 2pzm_A 21 MRILITGGAGCLG---SNLIEHWLPQGHEILVIDNFATGK 57 (184) T ss_dssp CEEEEETTTSHHH---HHHHHHHGGGTCEEEEEECCSSSC T ss_pred CEEEEECCCCHHH---HHHHHHHHHCCCEEEEEECCCCCC T ss_conf 8699988877899---999999997859899997888777 No 62 >>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* (A:) Probab=30.58 E-value=38 Score=15.00 Aligned_cols=38 Identities=8% Similarity=0.154 Sum_probs=29.1 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCC Q ss_conf 92688268986885699999999854891999817998565 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSC 41 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~ 41 (250) ||||||---|+-.. .|.+.|.+.||+|+++.-...... T Consensus 12 ~~IlVtGatG~iG~---~l~~~L~~~g~~v~~~~r~~~~~~ 49 (318) T 2r6j_A 12 SKILIFGGTGYIGN---HMVKGSLKLGHPTYVFTRPNSSKT 49 (318) T ss_dssp CCEEEETTTSTTHH---HHHHHHHHTTCCEEEEECTTCSCH T ss_pred CEEEEECCCCHHHH---HHHHHHHHCCCEEEEEECCCCCCH T ss_conf 81999899958999---999999978697999978974236 No 63 >>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} (A:) Probab=30.53 E-value=38 Score=14.99 Aligned_cols=101 Identities=12% Similarity=0.013 Sum_probs=50.4 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) ||||||=--|+=. +.|++.|.+.||+|+++.-..++...... ..-.+.+-..|...+-.. + T Consensus 5 ~kIlItGatG~iG---~~l~~~L~~~g~~V~~~~R~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~-~- 65 (227) T 3dhn_A 5 KKIVLIGASGFVG---SALLNEALNRGFEVTAVVRHPEKIKIENE--------------HLKVKKADVSSLDEVCEV-C- 65 (227) T ss_dssp CEEEEETCCHHHH---HHHHHHHHTTTCEEEEECSCGGGCCCCCT--------------TEEEECCCTTCHHHHHHH-H- T ss_pred CEEEEECCCCHHH---HHHHHHHHHCCCEEEEEECCHHHCCCCCC--------------CCCCCCCCCCCCCCCCCC-C- T ss_conf 9999988998899---99999999784989999888365332334--------------210011222222211111-2- Q ss_pred CCCCCEE--EECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 6454199--9714888531023334577789988987189853 Q gi|255764489|r 81 DKKPDLI--LSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSF 121 (250) Q Consensus 81 ~~~pDlV--iSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsI 121 (250) ...|.| ....+...+.......-|+......+...+.+-+ T Consensus 66 -~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (227) T 3dhn_A 66 -KGADAVISAFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRF 107 (227) T ss_dssp -TTCSEEEECCCC------CCSHHHHHHHHHHHHHHHTTCSEE T ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCE T ss_conf -465311111222222222222111233211100100344423 No 64 >>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} (A:1-183) Probab=30.37 E-value=38 Score=14.97 Aligned_cols=111 Identities=7% Similarity=0.020 Sum_probs=63.4 Q ss_pred CEEEE--ECCCCCCCHHHHHHHHHHHHCCCCEEEEC--CCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHH Q ss_conf 92688--26898688569999999985489199981--799856503202248970588971104763272799999998 Q gi|255764489|r 1 MRILL--TNDDGIKSKGLITLENIARSISDDIWICA--PEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIAL 76 (250) Q Consensus 1 m~ILi--tNDDG~~a~gl~~l~~~l~~~~~~v~vvA--P~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l 76 (250) |+||+ -.++|.-.+.=..+..+.++++.+|.++. +..++.....+..++-. ++..+... ...+.-.+.+.-+| T Consensus 2 ~~ilV~~e~~~~~l~~~s~e~l~~A~~L~~~v~av~~G~~~~~~~~~~~~~~Gad-~v~~v~~~--~~~~~~~~~~a~al 78 (183) T 1efv_A 2 QSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGIA-KVLVAQHD--VYKGLLPEELTPLI 78 (183) T ss_dssp CEEEEECCEETTEECTHHHHHHHHHHTTTSEEEEEEEESCCHHHHHHHHHSTTCC-EEEEEECG--GGTTCCHHHHHHHH T ss_pred CCEEEEEEECCCEECHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCC-EEEEECCC--HHCCCCHHHHHHHH T ss_conf 7379999925999988999999999985897699998787079999987515987-89992583--01235778999999 Q ss_pred HHCC-CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 7504-64541999714888531023334577789988987189853222 Q gi|255764489|r 77 QKMS-DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALS 124 (250) Q Consensus 77 ~~l~-~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS 124 (250) ..+. ...||+|+-|-. ...+.+++.. |+..|.|-++=- T Consensus 79 ~~~i~~~~p~~Vl~~~s---------~~g~~la~~l-A~~L~~~~vsdv 117 (183) T 1efv_A 79 LATQKQFNYTHICAGAS---------AFGKNLLPRV-AAKLEVAPISDI 117 (183) T ss_dssp HHHHHHHCCSEEEEESS---------HHHHHHHHHH-HHHHTCCCEEEE T ss_pred HHHHHHCCCCEEEECCC---------CCHHHHHHHH-HHHHCCCCCCCE T ss_conf 99987429989998887---------1145675899-987277610675 No 65 >>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} (B:) Probab=29.72 E-value=39 Score=14.91 Aligned_cols=85 Identities=9% Similarity=0.013 Sum_probs=50.2 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHH-C Q ss_conf 926882689868856999999998548919998179985650320224897058897110476327279999999875-0 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQK-M 79 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~-l 79 (250) +||||..||-.. .+.+.+.|+..|.+++-+|. +..++...-... - T Consensus 3 lriLiVdd~~~~---~~~l~~~L~~~g~~~v~~a~-------------------------------~g~eal~~~~~~~~ 48 (133) T 2r25_B 3 VKILVVEDNHVN---QEVIKRMLNLEGIENIELAC-------------------------------DGQEAFDKVKELTS 48 (133) T ss_dssp SCEEEECSCHHH---HHHHHHHHHHTTCCCEEEES-------------------------------SHHHHHHHHHHHHH T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEEEEC-------------------------------CHHHHHHHHHHHHH T ss_conf 889999698999---99999999986995999852-------------------------------33899999997652 Q ss_pred CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHH-HHHHHCCCCCCCCC Q ss_conf 46454199971488853102333457778998-89871898532220 Q gi|255764489|r 80 SDKKPDLILSGVNVGTNTSNHVAYSGTLAAAF-EGSLQGIRSFALSQ 125 (250) Q Consensus 80 ~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~-ea~~~GipsIAiS~ 125 (250) ....|||||-..+...--|.++ ...+ +-.-..+|-|.+|- T Consensus 49 ~~~~~dliilD~~lp~~dG~el------~~~ir~~~~~~~pii~lt~ 89 (133) T 2r25_B 49 KGENYNMIFMDVQMPKVDGLLS------TKMIRRDLGYTSPIVALTA 89 (133) T ss_dssp HTCCCSEEEECSCCSSSCHHHH------HHHHHHHSCCCSCEEEEES T ss_pred CCCCCEEEEEEECCCCCCHHHH------HHHHHHCCCCCCEEEEEEC T ss_conf 2578537765332899759999------9999856899977999978 No 66 >>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A (A:1-154) Probab=28.83 E-value=40 Score=14.81 Aligned_cols=108 Identities=7% Similarity=-0.099 Sum_probs=54.9 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) ||||||=--|+=.. .|.+.|.+.|+++.++.-+...+..-+................ ....+... T Consensus 9 ~kIlVTGa~GfIGs---~L~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~- 73 (154) T 1smk_A 9 FKVAILGAAGGIGQ---PLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFL-----------GQQQLEAA- 73 (154) T ss_dssp EEEEEETTTSTTHH---HHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEE-----------SHHHHHHH- T ss_pred CEEEEECCCCHHHH---HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCEEE-----------CCCCHHHH- T ss_conf 86999979976999---9999997189978799962899712478786166446875596-----------78976887- Q ss_pred CCCCCEEEECCCCCCCCCH------HHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 6454199971488853102------333457778998898718985322 Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSN------HVAYSGTLAAAFEGSLQGIRSFAL 123 (250) Q Consensus 81 ~~~pDlViSGiN~G~N~g~------~v~ySGTvgAA~ea~~~GipsIAi 123 (250) ...+|+++.-...-..... ++---||.--.-.++-.+++.+-+ T Consensus 74 ~~~~d~~~~~a~~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~v~ 122 (154) T 1smk_A 74 LTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVN 122 (154) T ss_dssp HTTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEE T ss_pred HCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEE T ss_conf 3678189985788789996377899987767778998751346663699 No 67 >>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} (A:1-131) Probab=28.45 E-value=41 Score=14.77 Aligned_cols=82 Identities=21% Similarity=0.243 Sum_probs=48.7 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) +||||..||-.. ...|.+.|+..|++|.++. . ..-|+..+. T Consensus 8 ~~ILiVdDd~~~---~~~l~~~L~~~g~~v~~a~-~-----------------------------------~~~al~~~~ 48 (131) T 1ys7_A 8 PRVLVVDDDSDV---LASLERGLRLSGFEVATAV-D-----------------------------------GAEALRSAT 48 (131) T ss_dssp CEEEEECSCHHH---HHHHHHHHHHTTCEEEEES-S-----------------------------------HHHHHHHHH T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEEEC-C-----------------------------------HHHHHHHHH T ss_conf 879999799999---9999999997899999989-9-----------------------------------999999998 Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 64541999714888531023334577789988987189853222001 Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAY 127 (250) Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~ 127 (250) ..+||+||--++.-.=-|.+ +-..+.......|-+.++... T Consensus 49 ~~~~dliilD~~lp~~~g~e------~~~~ir~~~~~~~ii~~t~~~ 89 (131) T 1ys7_A 49 ENRPDAIVLDINMPVLDGVS------VVTALRAMDNDVPVCVLSARS 89 (131) T ss_dssp HSCCSEEEEESSCSSSCHHH------HHHHHHHTTCCCCEEEEECCC T ss_pred HCCCEEEEEEECCCCCCCCC------CHHHHCCCCCCCCCCCCCCCC T ss_conf 58982999730233333222------100100145533312355789 No 68 >>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis} (A:) Probab=28.42 E-value=41 Score=14.77 Aligned_cols=43 Identities=9% Similarity=-0.028 Sum_probs=36.9 Q ss_pred CE-EEEECCCCCCCHHHHHHHHHHHHC-CCCEEEECCCCCCCCEE Q ss_conf 92-688268986885699999999854-89199981799856503 Q gi|255764489|r 1 MR-ILLTNDDGIKSKGLITLENIARSI-SDDIWICAPEMDQSCLA 43 (250) Q Consensus 1 m~-ILitNDDG~~a~gl~~l~~~l~~~-~~~v~vvAP~~~~S~~~ 43 (250) || |++--=||+.--.+..+.+.++.. +.+|.+++|+....+.+ T Consensus 3 Mkki~ill~~g~~~~e~~~~~d~l~~a~~~~v~~vs~~~~v~~~~ 47 (206) T 3f5d_A 3 LKKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPIVSSIG 47 (206) T ss_dssp CEEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSEEEBTT T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEE T ss_conf 868999978996789999999998234884999996899777620 No 69 >>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} (A:) Probab=27.66 E-value=40 Score=14.80 Aligned_cols=81 Identities=15% Similarity=0.166 Sum_probs=50.2 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) +||||..||-.. .+.+.+.|++.|.+|.-+|.+ +. -|+..+. T Consensus 3 ~riLiVDD~~~~---~~~l~~~L~~~g~~v~~~a~~-------------------------------~~----~al~~~~ 44 (120) T 1tmy_A 3 KRVLIVDDAAFM---RMMLKDIITKAGYEVAGEATN-------------------------------GR----EAVEKYK 44 (120) T ss_dssp CEEEEECSCHHH---HHHHHHHHHHTTCEEEEEESS-------------------------------HH----HHHHHHH T ss_pred CCEEEEECCHHH---HHHHHHHHHHCCCEEEEEECC-------------------------------HH----HHHHHHH T ss_conf 869999399999---999999999879989999889-------------------------------99----9999998 Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 645419997148885310233345777899889871898532220 Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250) Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250) ...||+||..++.-.--|.++ ...+......+|-|.+|. T Consensus 45 ~~~~dlii~D~~lP~~~G~~l------~~~i~~~~~~~pvi~lt~ 83 (120) T 1tmy_A 45 ELKPDIVTMDITMPEMNGIDA------IKEIMKIDPNAKIIVCSA 83 (120) T ss_dssp HHCCSEEEEECSCGGGCHHHH------HHHHHHHCTTCCEEEEEC T ss_pred HCCCCEEEEECCCCCCCHHHH------HHHHHHHCCCCCEEEEEC T ss_conf 468988998456899978999------999998688997899973 No 70 >>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} (X:165-284) Probab=27.36 E-value=43 Score=14.65 Aligned_cols=31 Identities=10% Similarity=0.029 Sum_probs=20.2 Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEECCCCCC Q ss_conf 9868856999999998548919998179985 Q gi|255764489|r 9 DGIKSKGLITLENIARSISDDIWICAPEMDQ 39 (250) Q Consensus 9 DG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~ 39 (250) |+.++-=.+.|..++..+|-+|++++|..-+ T Consensus 14 D~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~ 44 (120) T 1js1_X 14 RPLPQAVPNSFAEWMNATDYEFVITHPEGYE 44 (120) T ss_dssp SCCCSHHHHHHHHHHHTSSSEEEEECCTTCC T ss_pred CCCCHHHHHHHHHHHHHCCCCEEECCCCCCC T ss_conf 8530566899999987545561660476546 No 71 >>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus} (A:) Probab=26.11 E-value=45 Score=14.51 Aligned_cols=79 Identities=11% Similarity=0.071 Sum_probs=45.6 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCC Q ss_conf 26882689868856999999998548919998179985650320224897058897110476327279999999875046 Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMSD 81 (250) Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~~ 81 (250) ||||..||-..+. .+.+.|+..|++|..+. +| .-|+..+.. T Consensus 3 rILiVdDd~~~~~---~l~~~L~~~G~~v~~a~------------------------------~~------~~al~~l~~ 43 (119) T 2j48_A 3 HILLLEEEDEAAT---VVCEMLTAAGFKVIWLV------------------------------DG------STALDQLDL 43 (119) T ss_dssp EEEEECCCHHHHH---HHHHHHHHTTCEEEEES------------------------------CH------HHHHHHHHH T ss_pred EEEEEECCHHHHH---HHHHHHHHCCCCEEEEC------------------------------CH------HHHHHHHHH T ss_conf 9999987899999---99999997699769978------------------------------89------999999980 Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHH--HHHHHCCCCCCCCC Q ss_conf 454199971488853102333457778998--89871898532220 Q gi|255764489|r 82 KKPDLILSGVNVGTNTSNHVAYSGTLAAAF--EGSLQGIRSFALSQ 125 (250) Q Consensus 82 ~~pDlViSGiN~G~N~g~~v~ySGTvgAA~--ea~~~GipsIAiS~ 125 (250) .+||+||.-++.-.=-|.+++ ..+ +.....+|=|.+|- T Consensus 44 ~~pdlii~D~~lp~~dG~~~~------~~lr~~~~~~~~pii~~s~ 83 (119) T 2j48_A 44 LQPIVILMAWPPPDQSCLLLL------QHLREHQADPHPPLVLFLG 83 (119) T ss_dssp HCCSEEEEECSTTCCTHHHHH------HHHHHTCCCSSCCCEEEES T ss_pred CCCCEEEEEECCCCCCHHHHH------HHHHHCCCCCCCEEEEECC T ss_conf 799879985247999779999------9998563579982999807 No 72 >>1pch_A Phosphocarrier protein; phosphotransferase; 1.80A {Mycoplasma capricolum} (A:) Probab=26.08 E-value=45 Score=14.51 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=45.8 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 2688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) .+-|+|..|+++---..|++.++.+..+|++-.=...-.+.| +-----|.+++-+.=...++|.=++-+.-+|..++ T Consensus 4 ~~~v~~~~GlHaRpAa~lv~~a~~~~~~I~i~~~~~~~~akS--il~il~L~~~~G~~i~i~~~G~de~~Al~~l~~~l 80 (88) T 1pch_A 4 SAIITDKVGLHARPASVLAKEASKFSSNITIIANEKQGNLKS--IMNVMAMAIKTGTEITIQADGNDADQAIQAIKQTM 80 (88) T ss_dssp EEECCCTTCSCHHHHHHHHHHHTTCSSEEEEEETTEEEETTC--HHHHHHHCCCTTCEEEEEEESTTHHHHHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCEEEECHH--HHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH T ss_conf 999968998647389999999975898899998998980282--99998559999999999997879999999999999 No 73 >>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} (A:) Probab=25.24 E-value=47 Score=14.41 Aligned_cols=28 Identities=4% Similarity=-0.155 Sum_probs=12.8 Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEECCCC Q ss_conf 8688569999999985489199981799 Q gi|255764489|r 10 GIKSKGLITLENIARSISDDIWICAPEM 37 (250) Q Consensus 10 G~~a~gl~~l~~~l~~~~~~v~vvAP~~ 37 (250) |+....+...++.++..|++|.++.|.. T Consensus 72 g~~~~el~~p~~vl~~ag~~v~~asp~g 99 (291) T 1n57_A 72 GNHPIETLLPLYHLHAAGFEFEVATISG 99 (291) T ss_dssp CBCHHHHHHHHHHHHHTTCCEEEEESSS T ss_pred CCCHHHHHHHHHHHHHCCCEEEEECCCC T ss_conf 6789999999999997898799986899 No 74 >>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national project on protein structural and functional analyses; 1.60A {Aquifex aeolicus VF5} (A:) Probab=25.15 E-value=47 Score=14.40 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=34.6 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCE Q ss_conf 926882689868856999999998548919998179985650 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCL 42 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~ 42 (250) |||+++.|=-+....+..+.+.++...-++.|++=+--..+. T Consensus 6 mri~~iSDlH~~~~~~~~~~~~~~~~~~D~vv~~GDl~~~~~ 47 (260) T 2yvt_A 6 RKVLAIKNFKERFDLLPKLKGVIAEKQPDILVVVGNILKNEA 47 (260) T ss_dssp CEEEEEECCTTCGGGHHHHHHHHHHHCCSEEEEESCCCCCHH T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC T ss_conf 079999728999899999999876649999999566689987 No 75 >>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} (A:) Probab=24.75 E-value=44 Score=14.59 Aligned_cols=37 Identities=5% Similarity=-0.139 Sum_probs=27.1 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC Q ss_conf 9268826898688569999999985489199981799856 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQS 40 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S 40 (250) ||||||=--|+-. +.|++.|.+.||+|.++.-..++. T Consensus 19 ~kIlItGatG~iG---~~l~~~l~~~g~~v~~~~r~~~~~ 55 (242) T 2bka_A 19 KSVFILGASGETG---RVLLKEILEQGLFSKVTLIGRRKL 55 (242) T ss_dssp CEEEEECTTSHHH---HHHHHHHHHHTCCSEEEEEESSCC T ss_pred CEEEEECCCCHHH---HHHHHHHHHCCCCCEEEEEECCHH T ss_conf 9799989986899---999999997799726998536735 No 76 >>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.1A {Escherichia coli} PDB: 1nn4_A (A:1-130) Probab=24.36 E-value=49 Score=14.31 Aligned_cols=38 Identities=8% Similarity=-0.107 Sum_probs=28.8 Q ss_pred CEEEEECCCC-CCCHHHHHHHHHHHHCCCCEEEECCCCCCC Q ss_conf 9268826898-688569999999985489199981799856 Q gi|255764489|r 1 MRILLTNDDG-IKSKGLITLENIARSISDDIWICAPEMDQS 40 (250) Q Consensus 1 m~ILitNDDG-~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S 40 (250) |||-+-+|.. ++-. ..|.+.|++.||+|.=+-|..+.| T Consensus 2 mkI~igsDhag~~lK--~~i~~~L~~~g~eV~D~G~~~~~~ 40 (130) T 2vvr_A 2 KKIAFGCDHVGFILK--HEIVAHLVERGVEVIDKGTWSSER 40 (130) T ss_dssp CEEEEEECTTGGGGH--HHHHHHHHHTTCEEEECCCCSSSC T ss_pred CEEEEEECCCHHHHH--HHHHHHHHHCCCEEEECCCCCCCC T ss_conf 779997487079999--999999998799899659986766 No 77 >>1m1n_A Nitrogenase molybdenum-iron protein alpha chain; atomic resolution, FEMO cofactor, nitrogen fixation, central nitrogen ligand; HET: HCA CLF CFN; 1.16A {Azotobacter vinelandii} (A:1-55,A:299-491) Probab=24.22 E-value=49 Score=14.29 Aligned_cols=57 Identities=21% Similarity=0.071 Sum_probs=38.4 Q ss_pred CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 4645419997148885310233345777899889871898532220013567661478888849999999867 Q gi|255764489|r 80 SDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAYTYENMIPWEVSETHAPRVLRQLLKT 152 (250) Q Consensus 80 ~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~~~~~~~~~~~a~~~~~~ii~~l~~~ 152 (250) ...+||||+||+... .-+.-.|||.+.++.........-|+-+..++.+|.+.+... T Consensus 170 ~~~~PDLi~g~~~ek----------------~~a~k~giP~~~~~~~d~~~py~Gy~Ga~~la~~i~~al~~p 226 (248) T 1m1n_A 170 KRIKPDLIGSGIKEK----------------FIFQKMGIPFREMHSWDYSGPYHGFDGFAIFARDMDMTLNNP 226 (248) T ss_dssp HHHCCSEEEECHHHH----------------HHHHHTTCCEEESSSGGGCCCCSHHHHHHHHHHHHHHHHTCG T ss_pred HHCCCCEEEECCCHH----------------HHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCH T ss_conf 853999999898407----------------999982999700776546888535866999999999997465 No 78 >>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} (A:1-176,A:349-376) Probab=23.97 E-value=49 Score=14.27 Aligned_cols=98 Identities=15% Similarity=0.095 Sum_probs=54.8 Q ss_pred HHHHHHHHHHC-CCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHC---C-CCCCCEEEEC Q ss_conf 99999999854-89199981799856503202248970588971104763272799999998750---4-6454199971 Q gi|255764489|r 16 LITLENIARSI-SDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKM---S-DKKPDLILSG 90 (250) Q Consensus 16 l~~l~~~l~~~-~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l---~-~~~pDlViSG 90 (250) +.-|.+++++. +.++.+|.--...+-.-+.+++.. +..... .....-+.+.+..+-..+..+ + ..+||+|+- T Consensus 21 laPli~~l~~~~~~e~~lv~TGqH~~~~~~~~~~~~-i~~d~~-l~~~~~~~sl~~~~~~~i~~~~~~l~~~~PD~VlV- 97 (204) T 1v4v_A 21 XAPVYLALRGIPGLKPLVLLTGQHREQLRQALSLFG-IQEDRN-LDVXQERQALPDLAARILPQAARALKEXGADYVLV- 97 (204) T ss_dssp HHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHTTT-CCCSEE-CCCCSSCCCHHHHHHHHHHHHHHHHHHTTCSEEEE- T ss_pred HHHHHHHHHCCCCCCEEEEEECCCHHHHHCCCHHCC-CCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE- T ss_conf 999999996189998899990687456647122408-887656-78789888899999999998776654047652310- Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 48885310233345777899889871898532220 Q gi|255764489|r 91 VNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250) Q Consensus 91 iN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250) .|+. -=|+++|+-|..++||=+=+.- T Consensus 98 ------~GDt---~~~lA~AlaA~~~~IPvaHiea 123 (204) T 1v4v_A 98 ------HGDT---LTTFAVAWAAFLEGIPVGHVEA 123 (204) T ss_dssp ------ESSC---HHHHHHHHHHHHTTCCEEEETC T ss_pred ------CCCC---CCCHHHHHHHHHHHHHHHEECC T ss_conf ------1366---4311367889876344511103 No 79 >>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} (A:) Probab=23.83 E-value=42 Score=14.72 Aligned_cols=36 Identities=8% Similarity=0.170 Sum_probs=26.3 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC Q ss_conf 926882689868856999999998548919998179985 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQ 39 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~ 39 (250) ||||||---|+-.. .|++.|.+.|++|+......+. T Consensus 4 ~~ILVtGatGfiG~---~lv~~L~~~g~~v~~~~r~~~~ 39 (321) T 1e6u_A 4 QRVFIAGHRGMVGS---AIRRQLEQRGDVELVLRTRDEL 39 (321) T ss_dssp EEEEEETTTSHHHH---HHHHHHTTCTTEEEECCCTTTC T ss_pred CEEEEECCCCHHHH---HHHHHHHHCCCEEEEECCCHHC T ss_conf 85999879988999---9999999786989996671341 No 80 >>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} (A:) Probab=23.58 E-value=23 Score=16.26 Aligned_cols=114 Identities=11% Similarity=-0.027 Sum_probs=52.0 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC---CEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHH Q ss_conf 9268826898688569999999985489199981799856---5032022489705889711047632727999999987 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQS---CLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQ 77 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S---~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~ 77 (250) ||||||=--|+-.. .|++.|.+.|++|.++.=..... ............ .......+..+-+..+.+...+ T Consensus 1 MkIlItGatG~iG~---~lv~~Ll~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~d~~~~~~~~- 74 (337) T 1r6d_A 1 MRLLVTGGAGFIGS---HFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVD--ADPRLRFVHGDIRDAGLLAREL- 74 (337) T ss_dssp CEEEEETTTSHHHH---HHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGT--TCTTEEEEECCTTCHHHHHHHT- T ss_pred CEEEEECCCCHHHH---HHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHH--CCCCEEEEEEECCCHHHHHCCC- T ss_conf 95999888778999---99999997799766776599986787444476665540--3787599982134635410022- Q ss_pred HCCCCCCCEEEECCCCCCCC---C-----HHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 50464541999714888531---0-----23334577789988987189853222 Q gi|255764489|r 78 KMSDKKPDLILSGVNVGTNT---S-----NHVAYSGTLAAAFEGSLQGIRSFALS 124 (250) Q Consensus 78 ~l~~~~pDlViSGiN~G~N~---g-----~~v~ySGTvgAA~ea~~~GipsIAiS 124 (250) ...|.|+......... . ..+-..||.-....+.-.|+..+-++ T Consensus 75 ----~~~~~v~~~~~~~~~~~~~~~~~~~~~~nv~~t~~~l~~~~~~~~~~~v~~ 125 (337) T 1r6d_A 75 ----RGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHV 125 (337) T ss_dssp ----TTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEE T ss_pred ----CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf ----555358971232454433344244332149989999999997098844871 No 81 >>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} (A:1-178) Probab=23.45 E-value=48 Score=14.36 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=18.9 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 926882689868856999999998548919998 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC 33 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv 33 (250) +||||..||=.. ...|.+.|+..|++|.++ T Consensus 10 ~~ILiVdDd~~~---~~~l~~~L~~~g~~V~~a 39 (178) T 1r8j_A 10 IAICIWVESTAI---LQDCQRALSADRYQLQVC 39 (178) T ss_dssp EEEEEECCCHHH---HHHHHHHTCSTTEEEEEE T ss_pred HHHEEEECCHHH---HHHHHHHCCCCCEEEEEC T ss_conf 523024288899---999998677885589854 No 82 >>3ccd_A Phosphocarrier protein HPR; succinimide, isoaspartate, protein damage, autophosphatase, transferase; 1.00A {Escherichia coli} PDB: 1cm3_A 1cm2_A 1ggr_B 1hdn_A 1j6t_B 1pfh_A* 1poh_A 1vrc_C 2jel_P 3eza_B 3ezb_B 3eze_B 1opd_A (A:) Probab=23.28 E-value=51 Score=14.18 Aligned_cols=78 Identities=13% Similarity=0.166 Sum_probs=51.3 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCC Q ss_conf 26882689868856999999998548919998179985650320224897058897110476327279999999875046 Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMSD 81 (250) Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~~ 81 (250) ++-|.|..|+++---..|++.++.+..+|++.-=...-++.| +-----+.+++-..=...++|-=++-+.-+|..++. T Consensus 5 ~~~i~~~~GlHaRpAa~lv~~a~~~~~~v~i~~~~~~v~akS--il~il~L~i~~G~~i~i~~~G~de~~Al~~l~~~l~ 82 (85) T 3ccd_A 5 EVTITAPNGLDTRPAAQFVKEAKGFTSEITVTSNGKSASAKS--LFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMA 82 (85) T ss_dssp EEECCSTTCSCHHHHHHHHHHHTTSCSEEEEEETTEEEETTC--HHHHTTSCCCTTCEEEEEEESTTHHHHHHHHHHHHT T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCEEEECHH--HHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHH T ss_conf 999858996637299999999985899899998998994783--999983388899999999978899999999999997 No 83 >>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} (A:) Probab=23.25 E-value=51 Score=14.18 Aligned_cols=106 Identities=12% Similarity=0.105 Sum_probs=53.0 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) ||||||---|.-.. .+++.|.+.||+|+++.-................... ........+-.-.+.+..+... T Consensus 5 ~~IlVtGatG~iG~---~i~~~Ll~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-- 77 (308) T 1qyc_A 5 SRILLIGATGYIGR---HVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKA--SGANIVHGSIDDHASLVEAVKN-- 77 (308) T ss_dssp CCEEEESTTSTTHH---HHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHT--TTCEEECCCTTCHHHHHHHHHT-- T ss_pred CEEEEECCCCHHHH---HHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCC--CCCEEEECCCHHHHHHHHHHHH-- T ss_conf 98999899828999---9999999787979999889755442667777776404--8808997220102667998753-- Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 6454199971488853102333457778998898718985322 Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFAL 123 (250) Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAi 123 (250) .+-++. .......-||.-....+...|++.+-+ T Consensus 78 ---~~~~~~-------~~~~~~~~~~~~~~~a~~~~~v~~~v~ 110 (308) T 1qyc_A 78 ---VDVVIS-------TVGSLQIESQVNIIKAIKEVGTVKRFF 110 (308) T ss_dssp ---CSEEEE-------CCCGGGSGGGHHHHHHHHHHCCCSEEE T ss_pred ---CCEEEE-------ECCCCCCCCCHHHHHHHHHHCCEEEEE T ss_conf ---312221-------000122111127999999819802123 No 84 >>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydrolase, cytoplasm, NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei 1710B} PDB: 3glq_A* (A:1-246,A:410-466) Probab=22.85 E-value=52 Score=14.13 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=34.5 Q ss_pred HHHHHHHHHCCCCEEEEC--CCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC----CCCCCEEEE Q ss_conf 999999985489199981--7998565032022489705889711047632727999999987504----645419997 Q gi|255764489|r 17 ITLENIARSISDDIWICA--PEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS----DKKPDLILS 89 (250) Q Consensus 17 ~~l~~~l~~~~~~v~vvA--P~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~----~~~pDlViS 89 (250) ..|.+.|++.|.+|.+++ |-+-|--.-.++ .+.+..+|+..|-.-..-.-.+...+ +..|+|+|- T Consensus 89 A~LietL~a~GA~V~~~~cNp~STQDdvAAAL--------~~~Gi~VfAwkget~eeY~~~i~~aL~~~~~~~P~iIiD 159 (303) T 3d64_A 89 GVLIETLKALGADVRWASCNIFSTQDHAAAAI--------VEAGTPVFAFKGESLDEYWEFSHRIFEWPNGEFANMILD 159 (303) T ss_dssp HHHHHHHHHTTCEEEEECSSSSCCCHHHHHHH--------HHTTCCEECCTTCCHHHHHHHHHHTTCCSTTCCCCEEEE T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCHHHHHHH--------HHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEC T ss_conf 99999999769989997179865568999999--------966977997279998999999999970588999775652 No 85 >>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, structural genomics; 2.00A {Exiguobacterium sibiricum 255-15} (A:1-104) Probab=22.43 E-value=53 Score=14.08 Aligned_cols=71 Identities=11% Similarity=0.024 Sum_probs=33.8 Q ss_pred CEEEEECCCCCCCHHHHHHHHHH--HHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEEC-C-CHHHHHHHHH Q ss_conf 92688268986885699999999--854891999817998565032022489705889711047632-7-2799999998 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIA--RSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVH-G-TPVDCVVIAL 76 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l--~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~-G-tPaDcv~~~l 76 (250) ||||||--=|- .+|..++ ...+++| +++...+.+..-.. .++.|.+. . -|.+. =.| T Consensus 5 ~kVLv~g~G~~-----~al~~a~~~~~~~~~v-i~~d~~~~~~~~~~------------~d~~~~iP~~~~~~~~--~~l 64 (104) T 2pn1_A 5 PHLLITSAGRR-----AKLVEYFVKEFKTGRV-STADCSPLASALYX------------ADQHYIVPKIDEVEYI--DHL 64 (104) T ss_dssp CEEEEESCTTC-----HHHHHHHHHHCCSSEE-EEEESCTTCGGGGG------------SSSEEECCCTTSTTHH--HHH T ss_pred CEEEECCCCHH-----HHHHHHHHHCCCCCEE-EEECCCCCCHHHHH------------CCEEEECCCCCCHHHH--HHH T ss_conf 78999178469-----9999999976999989-99869999867884------------2867976898737799--999 Q ss_pred HHC-CCCCCCEEEECC Q ss_conf 750-464541999714 Q gi|255764489|r 77 QKM-SDKKPDLILSGV 91 (250) Q Consensus 77 ~~l-~~~~pDlViSGi 91 (250) ..+ ..+++|+|+.|+ T Consensus 65 ~~i~~~~~iD~vip~~ 80 (104) T 2pn1_A 65 LTLCQDEGVTALLTLI 80 (104) T ss_dssp HHHHHHHTCCEEEESS T ss_pred HHHHHHHCCCEEEECC T ss_conf 9999985999894046 No 86 >>1ptf_A Histidine-containing phosphocarrier protein HPR; phosphotransferase; 1.60A {Enterococcus faecalis} (A:) Probab=22.10 E-value=54 Score=14.04 Aligned_cols=76 Identities=13% Similarity=0.113 Sum_probs=48.6 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEE--ECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHC Q ss_conf 26882689868856999999998548919998179985650320--2248970588971104763272799999998750 Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANS--LTMSRNIACRTISKKRFAVHGTPVDCVVIALQKM 79 (250) Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~a--it~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l 79 (250) .+-|+|..|+++-=-..|++.++.+..+|++---...-++.|.- +++ .+++-..=...++|.=++-+.-.|..+ T Consensus 5 ~~~i~~~~GlHaRpAa~lv~~a~~~~~~v~i~~~~~~~~akSil~ll~L----~~~~G~~i~i~~~G~de~~al~~l~~~ 80 (88) T 1ptf_A 5 EFHIVAETGIHARPATLLVQTASKFNSDINLEYKGKSVNLKSIMGVMSL----GVGQGSDVTITVDGADEAEGMAAIVET 80 (88) T ss_dssp EEECCCTTCSCHHHHHHHHHHHTTCSSEEEEEETTEEEETTCHHHHHHH----CCCTTCEEEEEEESTTHHHHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCEEEECHHHHHHHHC----CCCCCCEEEEEEECCCHHHHHHHHHHH T ss_conf 9999389976462999999999768997999989999811809999865----999989999999887899999999999 Q ss_pred CC Q ss_conf 46 Q gi|255764489|r 80 SD 81 (250) Q Consensus 80 ~~ 81 (250) +. T Consensus 81 l~ 82 (88) T 1ptf_A 81 LQ 82 (88) T ss_dssp HH T ss_pred HH T ss_conf 98 No 87 >>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} (A:532-715) Probab=22.01 E-value=54 Score=14.03 Aligned_cols=110 Identities=11% Similarity=-0.024 Sum_probs=61.9 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEE----EEEECCCH-HHHH--HH Q ss_conf 26882689868856999999998548919998179985650320224897058897110----47632727-9999--99 Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKK----RFAVHGTP-VDCV--VI 74 (250) Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~----~~~v~GtP-aDcv--~~ 74 (250) ||.+-==||+....+....++++..+.+|.+++|....--.+..+++.....+...... .+..-|-+ .... .- T Consensus 5 kV~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~ 84 (184) T 1sy7_A 5 RVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSKNG 84 (184) T ss_dssp EEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHHTCH T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCEECCCCCEEECCEEECCCCHHHCCEEEECCCCCCHHHHCCCH T ss_conf 79998179968899999999999779977998467663576899877067105568852278899789964788760186 Q ss_pred HHHHCC---CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 987504---6454199971488853102333457778998898718985322 Q gi|255764489|r 75 ALQKMS---DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFAL 123 (250) Q Consensus 75 ~l~~l~---~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAi 123 (250) .+..+. .+.-..|.| +.+|..--|..|.+.|.+.-.- T Consensus 85 ~~~~~i~~~~~~g~~i~~------------ic~G~~~La~agll~g~~~t~~ 124 (184) T 1sy7_A 85 RALHWIREAFGHLKAIGA------------TGEAVDLVAKAIALPQVTVSSE 124 (184) T ss_dssp HHHHHHHHHHHTTCEEEE------------ETTHHHHHHHHHCCTTSCCCCS T ss_pred HHHHHHHHHHHCCCEEEE------------ECCHHHHHHHCCCCCCCCCCCC T ss_conf 899999999975997999------------7863999997287678401367 No 88 >>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* (A:624-646,A:836-895) Probab=21.64 E-value=16 Score=17.22 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=19.6 Q ss_pred EEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEE Q ss_conf 8826898688569999999985489199981799856503202 Q gi|255764489|r 4 LLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSL 46 (250) Q Consensus 4 LitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ai 46 (250) |++++-|-..+ +..+.+.++..| +.|..|+-|+|...-++ T Consensus 31 LLns~~g~~~K-i~~yi~Eak~~G--I~IlpPdIN~S~~~F~v 70 (83) T 2hpi_A 31 LLSVERHDSDK-VAEYIRDARALG--IPVLPPDVNRSGFDFKV 70 (83) T ss_dssp HHHHTTTCHHH-HHHHHHHHHTTT--CCEECCCTTTCCSSCEE T ss_pred HHHHCCCCCHH-HHHHHHHHHHHC--CCCCCCEEECCCCCEEE T ss_conf 98744332057-899999998713--66579700023431033 No 89 >>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D domain swapping; 2.03A {Mycobacterium tuberculosis H37RV} (A:1-101) Probab=21.61 E-value=55 Score=13.98 Aligned_cols=79 Identities=11% Similarity=0.108 Sum_probs=47.2 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) +||||.-||=- -.+.+.+.|++.|++|.++. ++ .-|+..+. T Consensus 5 ~~ILiVdDd~~---~~~~l~~~L~~~g~~v~~a~--------------------------------~~----~~al~~~~ 45 (101) T 2oqr_A 5 TSVLIVEDEES---LADPLAFLLRKEGFEATVVT--------------------------------DG----PAALAEFD 45 (101) T ss_dssp CEEEEECSCHH---HHHHHHHHHHHTTCEEEEEC--------------------------------SH----HHHHHHHH T ss_pred CCEEEEECCHH---HHHHHHHHHHHCCCEEEEEC--------------------------------CH----HHHHHHHH T ss_conf 81999979999---99999999998799999989--------------------------------99----99999998 Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 645419997148885310233345777899889871898532220 Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250) Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250) ..+|||||.-++.-.=-|..++ -.=-....+|-|.+|. T Consensus 46 ~~~~dliilD~~lP~~dG~~l~-------~~ir~~~~~pii~lt~ 83 (101) T 2oqr_A 46 RAGADIVLLDLMLPGMSGTDVC-------KQLRARSSVPVIMVTA 83 (101) T ss_dssp HHCCSEEEEESSCSSSCHHHHH-------HHHHHHCSCSEEEEEC T ss_pred HCCCCEEEEECCCCCCHHHHHH-------HHHHCCCCEEEEEEEC T ss_conf 5366415530132210356665-------5521367558999982 No 90 >>2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native protein, microsporidian, chitin deacetylase, hydrolase, inactive; 1.50A {Encephalitozoon cuniculi} (A:) Probab=21.54 E-value=55 Score=13.97 Aligned_cols=33 Identities=12% Similarity=-0.033 Sum_probs=26.4 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCC--EEEEC Q ss_conf 2688268986885699999999854891--99981 Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDD--IWICA 34 (250) Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~--v~vvA 34 (250) .|+||=|||..+.+...+.+.|++.+-. +.++. T Consensus 27 ~V~lTfDDg~~~~~~~~il~~L~~~~i~atff~~~ 61 (254) T 2vyo_A 27 MIAINFVDGPVRGVTDRILNTLDELGVKATFSFTV 61 (254) T ss_dssp EEEEEEESCCCTTHHHHHHHHHHHHTCCCEEEECC T ss_pred EEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEC T ss_conf 89998737998220799999999859966999964 No 91 >>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} (A:) Probab=21.40 E-value=56 Score=13.95 Aligned_cols=80 Identities=11% Similarity=0.073 Sum_probs=46.0 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250) .||||..||-.... .+.+.|+..|+.|.++. + ..-|+..+. T Consensus 4 ~~VLiVdD~~~~~~---~l~~~L~~~g~~v~~a~-~-----------------------------------~~eal~~~~ 44 (155) T 1qkk_A 4 PSVFLIDDDRDLRK---AMQQTLELAGFTVSSFA-S-----------------------------------ATEALAGLS 44 (155) T ss_dssp CEEEEECSCHHHHH---HHHHHHHHTTCEEEEES-C-----------------------------------HHHHHHTCC T ss_pred CEEEEEECCHHHHH---HHHHHHHHCCCEEEEEC-C-----------------------------------HHHHHHHHH T ss_conf 98999979999999---99999998799899978-9-----------------------------------999999854 Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 645419997148885310233345777899889871898532220 Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250) Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250) ..+||+||.-++.-.--|.+++ ..+-.....+|=|.+|. T Consensus 45 ~~~~dliilD~~lP~~dG~~~~------~~lr~~~~~~piI~lt~ 83 (155) T 1qkk_A 45 ADFAGIVISDIRMPGMDGLALF------RKILALDPDLPMILVTG 83 (155) T ss_dssp TTCCSEEEEESCCSSSCHHHHH------HHHHHHCTTSCEEEEEC T ss_pred CCCCCEEEECCCCCCCCHHHHH------HHHHHHCCCCCEEEEEC T ss_conf 4799889712578999899999------99998487894898989 No 92 >>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} (A:) Probab=21.28 E-value=56 Score=13.94 Aligned_cols=113 Identities=8% Similarity=-0.046 Sum_probs=63.6 Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEE-CCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHC Q ss_conf 9268826898688569999999985489199981799856503202-248970588971104763272799999998750 Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSL-TMSRNIACRTISKKRFAVHGTPVDCVVIALQKM 79 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ai-t~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l 79 (250) ||||||=--|+=.. .|++.|.+.|++|.++.=.......-... ...... ......++-+-.+.....+. T Consensus 6 ~~VlVTGatGfIG~---~lv~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-----~~~~~~~d~~d~~~~~~~~~-- 75 (341) T 3enk_A 6 GTILVTGGAGYIGS---HTAVELLAHGYDVVIADNLVNSKREAIARIEKITGK-----TPAFHETDVSDERALARIFD-- 75 (341) T ss_dssp CEEEEETTTSHHHH---HHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSC-----CCEEECCCTTCHHHHHHHHH-- T ss_pred CCEEEECCCCHHHH---HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCC-----CCEEEEEECCCHHHHHHHHH-- T ss_conf 95999748868999---999999978497999978887627778778860277-----86599913468576013343-- Q ss_pred CCCCCCEEEECCCCCCCCC--------HHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 4645419997148885310--------23334577789988987189853222 Q gi|255764489|r 80 SDKKPDLILSGVNVGTNTS--------NHVAYSGTLAAAFEGSLQGIRSFALS 124 (250) Q Consensus 80 ~~~~pDlViSGiN~G~N~g--------~~v~ySGTvgAA~ea~~~GipsIAiS 124 (250) ..++|.++--.-.+.... ..+-.-||.-....+.-.+++-+-+| T Consensus 76 -~~~~~~~~~~aa~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~ 127 (341) T 3enk_A 76 -AHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFS 127 (341) T ss_dssp -HSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE T ss_pred -CCCCCHHHHEEEECCCCCCCCCCHHHHHCCCCCCHHHHHHHHCCCCCCCCCC T ss_conf -1342112111020467620148245411152120455543311222222345 No 93 >>1sph_A Histidine-containing phosphocarrier protein HPR; phosphotransferase; 2.00A {Bacillus subtilis} (A:) Probab=21.07 E-value=57 Score=13.91 Aligned_cols=79 Identities=13% Similarity=0.105 Sum_probs=47.8 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCC Q ss_conf 26882689868856999999998548919998179985650320224897058897110476327279999999875046 Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMSD 81 (250) Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~~ 81 (250) ++-|+|..|+++---..|++.++.+..+|++.-=...-++.| +.----|.+++-+.=...++|.=++-+.-.+..++. T Consensus 5 ~~~i~~~~GlHaRpAa~lv~~a~~~~~~I~i~~~~~~~~akS--il~ll~L~~~~G~~i~i~~~G~de~~Al~~l~~~l~ 82 (88) T 1sph_A 5 TFKVTADSGIHARPATVLVQTASKYDADVNLEYNGKTVNLKD--IMGVMSLGIAKGAEITISASGADENDALNALEETMK 82 (88) T ss_dssp EEEBCCTTCSCHHHHHHHHHHHTTSSSEEEEEETTEEEETTC--HHHHHHHCCCTTCEEEEEEESTTHHHHHHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCEEECCHH--HHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHH T ss_conf 999907995547489999999976899899998999984275--999985599998999999978489999999999998 Q ss_pred C Q ss_conf 4 Q gi|255764489|r 82 K 82 (250) Q Consensus 82 ~ 82 (250) . T Consensus 83 ~ 83 (88) T 1sph_A 83 S 83 (88) T ss_dssp H T ss_pred H T ss_conf 6 No 94 >>2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159} (A:) Probab=20.97 E-value=57 Score=13.90 Aligned_cols=12 Identities=0% Similarity=-0.249 Sum_probs=4.7 Q ss_pred ECCCHHHHHHHH Q ss_conf 327279999999 Q gi|255764489|r 64 VHGTPVDCVVIA 75 (250) Q Consensus 64 v~GtPaDcv~~~ 75 (250) .|.-|.|+-..+ T Consensus 113 FDDG~~~~~~~~ 124 (311) T 2w3z_A 113 FDDGVDPNMTPK 124 (311) T ss_dssp EEEECCTTHHHH T ss_pred EECCCCCCCHHH T ss_conf 727998341899 No 95 >>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolution, signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A (A:) Probab=20.94 E-value=57 Score=13.89 Aligned_cols=80 Identities=13% Similarity=0.221 Sum_probs=49.7 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCC Q ss_conf 26882689868856999999998548919998179985650320224897058897110476327279999999875046 Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMSD 81 (250) Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~~ 81 (250) ||||..||=-. ...|.+.|+..|++|..++ | ..-|+..+.. T Consensus 7 ~ILiVDdd~~~---~~~l~~~L~~~g~~v~~a~--------------------------------~----~~~al~~l~~ 47 (127) T 2gkg_A 7 KILIVESDTAL---SATLRSALEGRGFTVDETT--------------------------------D----GKGSVEQIRR 47 (127) T ss_dssp EEEEECSCHHH---HHHHHHHHHHHTCEEEEEC--------------------------------C----HHHHHHHHHH T ss_pred CEEEEECCHHH---HHHHHHHHHHCCCEEEEEC--------------------------------C----HHHHHHHHHH T ss_conf 58999899999---9999999998799999986--------------------------------8----4999999981 Q ss_pred CCCCEEEECCCCCCCC-CHHHHHHHHHHHHHH--HHHHCCCCCCCCCC Q ss_conf 4541999714888531-023334577789988--98718985322200 Q gi|255764489|r 82 KKPDLILSGVNVGTNT-SNHVAYSGTLAAAFE--GSLQGIRSFALSQA 126 (250) Q Consensus 82 ~~pDlViSGiN~G~N~-g~~v~ySGTvgAA~e--a~~~GipsIAiS~~ 126 (250) .+||+||..++.-.++ |.++. ..+. ..+..+|=|.+|-. T Consensus 48 ~~~d~iilD~~lp~~~dG~~l~------~~lr~~~~~~~ipii~~s~~ 89 (127) T 2gkg_A 48 DRPDLVVLAVDLSAGQNGYLIC------GKLKKDDDLKNVPIVIIGNP 89 (127) T ss_dssp HCCSEEEEESBCGGGCBHHHHH------HHHHHSTTTTTSCEEEEECG T ss_pred CCCCEEEEEECCCCCCCHHHHH------HHHHHCCCCCCCCEEEEECC T ss_conf 7997997430013456577999------99984777799819999789 No 96 >>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} (A:) Probab=20.40 E-value=28 Score=15.76 Aligned_cols=92 Identities=16% Similarity=0.152 Sum_probs=40.5 Q ss_pred CEEEEE---CCCCCCCHHHHHHHHHHHHCCC-CEEEECCCCCCCCEEEEECCCCCEEEEEE-------EEEEEEECCCHH Q ss_conf 926882---6898688569999999985489-19998179985650320224897058897-------110476327279 Q gi|255764489|r 1 MRILLT---NDDGIKSKGLITLENIARSISD-DIWICAPEMDQSCLANSLTMSRNIACRTI-------SKKRFAVHGTPV 69 (250) Q Consensus 1 m~ILit---NDDG~~a~gl~~l~~~l~~~~~-~v~vvAP~~~~S~~~~ait~~~~~~~~~~-------~~~~~~v~GtPa 69 (250) |||.+- +|.|.+.-=+++ +..+.+.+. +++++.+...-...-.... ..+....+ ....+++.-..- T Consensus 3 ~rIa~~~~g~deg~d~~vl~A-~~~~~~~~~~~~iLvG~~~~I~~~l~~~~--~~~~~~~~~~~~~~~~~~~~a~r~~~~ 79 (345) T 1vi1_A 3 LRIAVDAXGGDHAPKAVIDGV-IKGIEAFDDLHITLVGDKTTIESHLTTTS--DRITVLHADEVIEPTDEPVRAVRRKKN 79 (345) T ss_dssp EEEEEESSCSSSTTHHHHHHH-HHHHHHCTTEEEEEEECHHHHHTTCCSCC--TTEEEEECCBCCCTTSCHHHHHHHCTT T ss_pred EEEEEECCCCCCCCHHHHHHH-HHHHHHCCCCEEEEEECHHHHHHHHHHCC--CCEEEECCCCCCCCCCCHHHHHHHHHH T ss_conf 299998048855818899999-99998788986999948999999984370--563898587620588655789885110 Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCC Q ss_conf 99999987504645419997148885 Q gi|255764489|r 70 DCVVIALQKMSDKKPDLILSGVNVGT 95 (250) Q Consensus 70 Dcv~~~l~~l~~~~pDlViSGiN~G~ 95 (250) |+.++|+.-+...+-|.++||-|.|. T Consensus 80 ~s~~~a~~lv~~G~aD~~vsg~~t~~ 105 (345) T 1vi1_A 80 SSXVLXAQEVAENRADACISAGNTGA 105 (345) T ss_dssp BHHHHHHHHHHTTSCSEEEECSCHHH T ss_pred HHHHHHHHHHHCCCCCEEEECCCCHH T ss_conf 28999999863146564774467177 No 97 >>1v7c_A Threonine synthase; PLP-dependent enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; HET: HEY; 2.00A {Thermus thermophilus} (A:58-166) Probab=20.33 E-value=43 Score=14.62 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=18.0 Q ss_pred EEEEEEECCCHHHHHHHHHHHCCCCCCCEEEECCC Q ss_conf 11047632727999999987504645419997148 Q gi|255764489|r 58 SKKRFAVHGTPVDCVVIALQKMSDKKPDLILSGVN 92 (250) Q Consensus 58 ~~~~~~v~GtPaDcv~~~l~~l~~~~pDlViSGiN 92 (250) +.+...+.|++-||+..+... ..+.++..++-.| T Consensus 67 Ga~v~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~n 100 (109) T 1v7c_A 67 GARIVQVEGNFDDALRLTQKL-TEAFPVALVNSVN 100 (109) T ss_dssp TCEEEEEESCHHHHHHHHHHH-HHHSSCEECSTTS T ss_pred CCCEEECCCCCCCHHHHHHHH-HHHHHHCCCCCCC T ss_conf 960574167542013456667-8876512233468 No 98 >>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* (A:) Probab=20.32 E-value=59 Score=13.81 Aligned_cols=118 Identities=14% Similarity=0.129 Sum_probs=48.3 Q ss_pred CEEEEECCCCCCCHHHHHHHHHH-HHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHH- Q ss_conf 92688268986885699999999-8548919998179985650320224897058897110476327279999999875- Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIA-RSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQK- 78 (250) Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l-~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~- 78 (250) |||++--.+++. -+..+.+.+ ...++++..|....+.....++....-|..... ...+-+.+...-.+.. T Consensus 13 mki~~~gs~~~~--~l~~ll~~~~~~~~~~i~~v~t~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~ 84 (215) T 3da8_A 13 ARLVVLASGTGS--LLRSLLDAAVGDYPARVVAVGVDRECRAAEIAAEASVPVFTVR------LADHPSRDAWDVAITAA 84 (215) T ss_dssp EEEEEEESSCCH--HHHHHHHHSSTTCSEEEEEEEESSCCHHHHHHHHTTCCEEECC------GGGSSSHHHHHHHHHHH T ss_pred CEEEEEECCCCH--HHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHCCCCEEEEE------CCCCHHHHHHHHHHHHH T ss_conf 889999837815--5999999638799977999995686667665343168646740------22101367888887765 Q ss_pred CCCCCCCEEEECC-------------CC-CCCCCHHH--HHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 0464541999714-------------88-85310233--34577789988987189853222001 Q gi|255764489|r 79 MSDKKPDLILSGV-------------NV-GTNTSNHV--AYSGTLAAAFEGSLQGIRSFALSQAY 127 (250) Q Consensus 79 l~~~~pDlViSGi-------------N~-G~N~g~~v--~ySGTvgAA~ea~~~GipsIAiS~~~ 127 (250) +....||++||-- .. ..|+=... -|-|. .+-.-+.+.|.+.+++|.-+ T Consensus 85 l~~~~~Dl~v~~~~~~iip~~~l~~~~~~~iN~Hps~LP~yRG~-~p~~wai~~g~~~~G~TiH~ 148 (215) T 3da8_A 85 TAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGT-HGVADALAYGVKVTGATVHL 148 (215) T ss_dssp HHTTCCSEEEEEECCSCCCHHHHHHHTTTEEEEESSCTTSSCST-THHHHHHHHTCSEEEEEEEE T ss_pred HHHHCCCEEEECCCEEEEECCCCCCCCCEEEECCCCCCCCCCCC-CHHHHHHHCCCCEECEEEEE T ss_conf 54303321441141024301000012222333377764320023-20456764488275407899 No 99 >>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A* (A:1-165) Probab=20.07 E-value=54 Score=14.01 Aligned_cols=101 Identities=12% Similarity=0.109 Sum_probs=47.3 Q ss_pred CEEEEECCCCC-----CCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCE-EEEEEEEEEEEEC--CCHHHHH Q ss_conf 92688268986-----88569999999985489199981799856503202248970-5889711047632--7279999 Q gi|255764489|r 1 MRILLTNDDGI-----KSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNI-ACRTISKKRFAVH--GTPVDCV 72 (250) Q Consensus 1 m~ILitNDDG~-----~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~-~~~~~~~~~~~v~--GtPaDcv 72 (250) ||||+-.=|++ .+|=|+.|++..- +.++++++....+.-..+. ..+ ++.......+.-. -+..-+- T Consensus 1 MrILii~~~~iGD~i~~~p~l~~Lk~~~P--~a~I~~l~~~~~~~l~~~~----p~i~~v~~~~~~~~~~~~~~~~~~~~ 74 (165) T 2gt1_A 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIP--GIKFDWVVEEGFAQIPSWH----AAVERVIPVAIRRWRKAWFSAPIKAE 74 (165) T ss_dssp CEEEEECCCCHHHHHHHHHHHHHHHHHST--TCEEEEEEEGGGTHHHHTS----TTEEEEEEECHHHHHTTTTSHHHHHH T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECHHHHHHHHHC----CCCCEEEEECCCHHCCCCCCCHHHHH T ss_conf 97999958984899999999999998789--9989999896489998519----98558999455000135540057899 Q ss_pred HHHH-HHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 9998-75046454199971488853102333457778998898718985 Q gi|255764489|r 73 VIAL-QKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRS 120 (250) Q Consensus 73 ~~~l-~~l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~Gips 120 (250) ...+ ..+...++|+||. ..++.-+++-..+.+.+. T Consensus 75 ~~~~~~~lr~~~~Dlvi~-------------~~~~~~~~~l~~~~~~~~ 110 (165) T 2gt1_A 75 RKAFREALQAKNYDAVID-------------AQGLVKSAALVTRLAHGV 110 (165) T ss_dssp HHHHHHHHHHSBCSEEEE-------------CSCCHHHHHHTGGGSBSC T ss_pred HHHHHHHHHCCCCCEEEE-------------CCCCCHHHHHHHHHHHHH T ss_conf 999999971168888998-------------866411326777766523 Done!