Query gi|255764489|ref|YP_003065094.2| stationary phase survival protein SurE [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 250
No_of_seqs 158 out of 1614
Neff 7.7
Searched_HMMs 23785
Date Tue May 31 17:46:48 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764489.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v4n_A Multifunctional protein 100.0 0 0 578.3 21.6 245 1-250 2-247 (254)
2 1j9j_A Stationary phase surviV 100.0 0 0 576.6 22.1 243 1-249 1-247 (247)
3 2phj_A 5'-nucleotidase SURE; S 100.0 0 0 573.5 22.0 247 1-250 2-250 (251)
4 1l5x_A SurviVal protein E; str 100.0 0 0 542.6 21.7 244 1-249 1-260 (280)
5 2e6c_A 5'-nucleotidase SURE; S 100.0 0 0 544.6 19.5 233 1-244 1-240 (244)
6 2gek_A Phosphatidylinositol ma 95.1 0.032 1.4E-06 32.8 5.3 40 1-40 21-65 (406)
7 3fro_A GLGA glycogen synthase; 94.4 0.054 2.3E-06 31.5 5.0 39 1-39 3-47 (439)
8 2iyf_A OLED, oleandomycin glyc 93.4 0.2 8.5E-06 27.9 6.4 106 1-127 8-135 (430)
9 2iuy_A Avigt4, glycosyltransfe 93.1 0.2 8.4E-06 28.0 5.9 39 1-39 4-59 (342)
10 2p6p_A Glycosyl transferase; G 90.7 0.35 1.5E-05 26.5 5.0 35 1-38 1-39 (384)
11 1rzu_A Glycogen synthase 1; gl 90.7 0.31 1.3E-05 26.8 4.7 36 1-36 1-43 (485)
12 2iw1_A Lipopolysaccharide core 89.3 0.76 3.2E-05 24.4 5.8 82 1-89 1-86 (374)
13 1rrv_A Glycosyltransferase GTF 89.0 0.46 1.9E-05 25.8 4.5 37 1-40 1-41 (416)
14 1iir_A Glycosyltransferase GTF 86.1 1.1 4.5E-05 23.5 4.9 37 1-40 1-41 (415)
15 1g2i_A Protease I; intracellul 85.4 0.93 3.9E-05 23.9 4.3 38 1-38 1-38 (166)
16 3ia7_A CALG4; glycosysltransfe 84.4 0.55 2.3E-05 25.3 2.8 109 2-127 6-134 (402)
17 2jjm_A Glycosyl transferase, g 83.9 0.94 4E-05 23.9 3.8 84 1-89 16-105 (394)
18 1vhq_A Enhancing lycopene bios 83.0 1.3 5.5E-05 23.0 4.3 39 3-41 11-52 (232)
19 2iya_A OLEI, oleandomycin glyc 82.7 1.6 6.8E-05 22.4 4.6 38 1-38 13-51 (424)
20 3h4t_A Glycosyltransferase GTF 81.7 1.4 6.1E-05 22.7 4.1 108 1-126 1-125 (404)
21 2qzs_A Glycogen synthase; glyc 81.7 1.2 5E-05 23.2 3.6 36 1-37 1-44 (485)
22 3iaa_A CALG2; glycosyltransfer 80.4 3.1 0.00013 20.7 9.2 107 2-128 22-151 (416)
23 2hqr_A Putative transcriptiona 75.0 1.4 5.9E-05 22.8 2.3 30 1-33 1-30 (223)
24 3c48_A Predicted glycosyltrans 74.9 2.8 0.00012 21.0 3.8 112 1-124 21-152 (438)
25 1qo0_D AMIR; binding protein, 73.3 3.7 0.00016 20.2 4.2 35 1-38 13-47 (196)
26 1o97_C Electron transferring f 71.3 3.5 0.00015 20.4 3.7 102 16-127 40-149 (264)
27 2pl1_A Transcriptional regulat 70.7 4.9 0.0002 19.5 4.3 80 1-125 1-80 (121)
28 2pzm_A Putative nucleotide sug 70.3 2.8 0.00012 21.0 3.0 108 1-123 21-133 (330)
29 3oy2_A Glycosyltransferase B73 69.7 4.3 0.00018 19.8 3.8 37 1-38 1-41 (413)
30 1ny5_A Transcriptional regulat 67.5 5.5 0.00023 19.2 4.0 30 1-33 1-30 (387)
31 3ew7_A LMO0794 protein; Q8Y8U8 67.2 6.6 0.00028 18.7 4.8 31 1-34 1-31 (221)
32 1efv_B Electron transfer flavo 66.1 6.8 0.00029 18.6 4.3 105 16-128 43-154 (255)
33 2pln_A HP1043, response regula 65.1 3.4 0.00014 20.4 2.6 30 1-33 19-48 (137)
34 1sg0_A NRH dehydrogenase [quin 62.1 6 0.00025 18.9 3.4 33 1-33 3-39 (230)
35 3l3b_A ES1 family protein; ssg 60.3 8.8 0.00037 17.9 5.0 34 9-42 37-70 (242)
36 3h2s_A Putative NADH-flavin re 56.6 7.7 0.00032 18.3 3.1 99 1-120 1-100 (224)
37 2p5y_A UDP-glucose 4-epimerase 56.1 7.5 0.00031 18.4 3.0 30 1-33 1-30 (311)
38 3m2p_A UDP-N-acetylglucosamine 55.5 8.1 0.00034 18.1 3.1 31 1-34 3-33 (311)
39 1yio_A Response regulatory pro 55.0 11 0.00045 17.4 3.6 79 2-125 6-84 (208)
40 2pk3_A GDP-6-deoxy-D-LYXO-4-he 54.0 8.9 0.00038 17.9 3.1 32 1-35 13-44 (321)
41 1ys7_A Transcriptional regulat 53.3 9.2 0.00039 17.8 3.1 79 2-125 9-87 (233)
42 1udb_A Epimerase, UDP-galactos 52.7 9.7 0.00041 17.7 3.1 104 1-121 1-119 (338)
43 3ko8_A NAD-dependent epimerase 52.1 10 0.00042 17.6 3.1 31 1-34 1-31 (312)
44 1j6u_A UDP-N-acetylmuramate-al 51.1 13 0.00053 17.0 4.8 30 1-33 13-42 (469)
45 3e8x_A Putative NAD-dependent 49.5 12 0.0005 17.1 3.2 104 1-124 22-129 (236)
46 1s8n_A Putative antiterminator 49.4 13 0.00056 16.8 3.9 79 2-125 15-93 (205)
47 3ccd_A Phosphocarrier protein 49.1 13 0.00054 16.9 3.3 78 2-81 5-82 (85)
48 2vrn_A Protease I, DR1199; cys 48.6 14 0.00058 16.7 4.7 39 2-40 11-49 (190)
49 3he8_A Ribose-5-phosphate isom 47.5 12 0.00049 17.2 2.9 36 1-38 1-37 (149)
50 3dqp_A Oxidoreductase YLBE; al 46.6 12 0.0005 17.1 2.8 106 1-126 1-107 (219)
51 1oi4_A Hypothetical protein YH 45.4 15 0.00065 16.4 5.3 42 2-43 25-66 (193)
52 3kkl_A Probable chaperone prot 44.6 16 0.00066 16.4 4.1 30 10-39 25-54 (244)
53 1dc7_A NTRC, nitrogen regulati 44.6 16 0.00066 16.4 4.4 79 2-125 5-83 (124)
54 2c5a_A GDP-mannose-3', 5'-epim 44.6 15 0.00065 16.4 3.1 30 1-33 30-59 (379)
55 1u9c_A APC35852; structural ge 44.5 16 0.00067 16.4 4.7 30 10-39 25-54 (224)
56 3h1g_A Chemotaxis protein CHEY 44.0 13 0.00053 17.0 2.6 81 1-125 6-89 (129)
57 1kew_A RMLB;, DTDP-D-glucose 4 43.2 17 0.0007 16.2 3.4 33 1-36 1-33 (361)
58 3m6m_D Sensory/regulatory prot 42.8 15 0.00061 16.6 2.8 84 1-125 15-98 (143)
59 1dcf_A ETR1 protein; beta-alph 41.7 18 0.00074 16.1 4.3 29 1-32 8-36 (136)
60 3c97_A Signal transduction his 41.7 18 0.00074 16.1 3.8 85 1-126 11-96 (140)
61 2pq6_A UDP-glucuronosyl/UDP-gl 40.9 18 0.00076 16.0 6.6 21 16-36 25-45 (482)
62 1efp_B ETF, protein (electron 40.5 18 0.00077 16.0 3.2 107 15-129 39-152 (252)
63 3dhn_A NAD-dependent epimerase 40.1 19 0.00078 15.9 4.1 100 1-120 5-106 (227)
64 1lss_A TRK system potassium up 39.7 19 0.00079 15.9 4.1 92 1-121 5-98 (140)
65 1gy8_A UDP-galactose 4-epimera 39.6 19 0.0008 15.9 4.5 30 1-33 3-33 (397)
66 1pch_A Phosphocarrier protein; 39.2 11 0.00048 17.2 1.8 77 2-80 4-80 (88)
67 1xhf_A DYE resistance, aerobic 39.1 19 0.00081 15.8 5.2 78 2-125 5-82 (123)
68 2a9o_A Response regulator; ess 38.9 19 0.00081 15.8 7.1 79 2-126 3-81 (120)
69 3c3w_A Two component transcrip 38.8 19 0.00082 15.8 3.5 29 1-33 2-30 (225)
70 3oh8_A Nucleoside-diphosphate 38.0 20 0.00084 15.7 3.1 34 1-37 148-181 (516)
71 3cfy_A Putative LUXO repressor 37.3 21 0.00086 15.7 5.5 79 2-125 6-84 (137)
72 2b4a_A BH3024; 10175646, struc 37.2 21 0.00087 15.7 3.3 30 1-33 16-45 (138)
73 3hzh_A Chemotaxis response reg 36.5 21 0.00089 15.6 3.2 53 65-125 67-119 (157)
74 1vl0_A DTDP-4-dehydrorhamnose 36.5 13 0.00055 16.9 1.7 31 1-34 13-43 (292)
75 1ka5_A Phosphocarrier protein 35.0 11 0.00046 17.4 1.1 76 3-80 6-81 (88)
76 1o1y_A Conserved hypothetical 34.9 22 0.00094 15.4 4.4 36 1-38 13-48 (239)
77 3hdg_A Uncharacterized protein 34.6 23 0.00095 15.4 4.0 79 1-124 8-86 (137)
78 2r60_A Glycosyl transferase, g 34.6 23 0.00095 15.4 5.1 95 16-122 39-148 (499)
79 3hbm_A UDP-sugar hydrolase; PS 34.4 17 0.00073 16.1 2.1 12 79-90 65-76 (282)
80 3a10_A Response regulator; pho 34.3 23 0.00096 15.4 3.2 79 2-125 3-81 (116)
81 1ptf_A Histidine-containing ph 33.1 16 0.00069 16.3 1.8 76 3-80 6-81 (88)
82 1p6q_A CHEY2; chemotaxis, sign 33.0 11 0.00048 17.2 1.0 80 1-124 7-88 (129)
83 1qkk_A DCTD, C4-dicarboxylate 32.8 24 0.001 15.2 5.6 29 2-33 5-33 (155)
84 1kgs_A DRRD, DNA binding respo 32.7 24 0.001 15.2 4.2 81 1-126 3-83 (225)
85 3n7t_A Macrophage binding prot 32.6 24 0.001 15.2 4.0 29 10-38 31-59 (247)
86 2zay_A Response regulator rece 32.6 24 0.001 15.2 2.8 80 1-125 9-90 (147)
87 1a04_A Nitrate/nitrite respons 32.6 16 0.00068 16.3 1.7 30 1-34 6-35 (215)
88 1zgz_A Torcad operon transcrip 32.4 25 0.001 15.2 3.3 30 1-33 3-32 (122)
89 2vyc_A Biodegradative arginine 31.7 25 0.0011 15.1 3.6 27 14-41 232-258 (755)
90 3ihs_A Phosphocarrier protein 31.6 19 0.00081 15.8 1.9 76 2-79 29-104 (106)
91 2ayx_A Sensor kinase protein R 30.5 27 0.0011 15.0 2.7 72 153-248 172-245 (254)
92 1oc2_A DTDP-glucose 4,6-dehydr 30.5 24 0.00099 15.3 2.2 33 1-36 5-37 (348)
93 1rw7_A YDR533CP; alpha-beta sa 30.4 27 0.0011 15.0 4.1 37 3-39 8-54 (243)
94 1jbe_A Chemotaxis protein CHEY 29.7 27 0.0012 14.9 2.8 81 1-125 5-87 (128)
95 2x4g_A Nucleoside-diphosphate- 29.5 28 0.0012 14.9 3.8 32 1-35 14-45 (342)
96 1yzf_A Lipase/acylhydrolase; s 28.7 29 0.0012 14.8 3.0 34 62-97 45-79 (195)
97 3fse_A Two-domain protein cont 27.8 30 0.0012 14.7 5.0 43 2-44 12-54 (365)
98 1jay_A Coenzyme F420H2:NADP+ o 27.7 30 0.0012 14.7 3.0 37 1-40 1-37 (212)
99 3gvp_A Adenosylhomocysteinase 27.4 30 0.0013 14.7 2.3 66 17-90 68-138 (435)
100 3h5i_A Response regulator/sens 27.3 30 0.0013 14.6 3.3 80 1-126 6-87 (140)
101 1n2s_A DTDP-4-, DTDP-glucose o 26.5 22 0.00091 15.5 1.5 94 1-125 1-104 (299)
102 2zxr_A Single-stranded DNA spe 26.4 22 0.00094 15.4 1.5 42 2-45 74-118 (666)
103 2j5v_A Glutamate 5-kinase; pro 25.7 30 0.0013 14.6 2.1 31 4-34 15-49 (367)
104 1y51_A Phosphocarrier protein 25.6 32 0.0014 14.5 3.2 75 2-78 5-79 (88)
105 1i24_A Sulfolipid biosynthesis 25.5 33 0.0014 14.4 3.1 30 1-33 12-41 (404)
106 3jte_A Response regulator rece 25.3 33 0.0014 14.4 4.1 29 2-33 5-33 (143)
107 3l4b_C TRKA K+ channel protien 24.5 34 0.0014 14.3 2.3 35 1-39 1-35 (218)
108 1sph_A Histidine-containing ph 24.2 30 0.0013 14.6 1.9 76 3-80 6-81 (88)
109 3d0c_A Dihydrodipicolinate syn 23.6 35 0.0015 14.2 6.2 122 6-163 24-146 (314)
110 3mw8_A Uroporphyrinogen-III sy 23.5 35 0.0015 14.2 3.3 33 1-38 2-34 (240)
111 2rjn_A Response regulator rece 22.6 37 0.0016 14.1 2.8 79 2-125 9-87 (154)
112 2hun_A 336AA long hypothetical 22.5 37 0.0016 14.1 2.3 30 1-33 4-35 (336)
113 1kkl_H Phosphocarrier protein 22.2 38 0.0016 14.0 2.3 77 2-80 17-93 (100)
114 3cz5_A Two-component response 21.9 38 0.0016 14.0 2.8 44 76-125 44-87 (153)
115 2jky_A Hypoxanthine-guanine ph 21.4 39 0.0016 14.0 2.8 39 70-120 16-54 (213)
116 1t70_A Phosphatase; crystal, X 21.2 30 0.0013 14.6 1.4 44 1-47 1-46 (255)
117 1w2w_B 5-methylthioribose-1-ph 21.2 40 0.0017 13.9 2.0 49 83-131 51-99 (191)
118 3h9u_A Adenosylhomocysteinase; 21.2 40 0.0017 13.9 3.0 101 17-128 57-183 (436)
119 1ny1_A Probable polysaccharide 21.0 40 0.0017 13.9 2.2 27 2-28 44-70 (240)
120 1kq3_A Glycerol dehydrogenase; 20.9 27 0.0011 14.9 1.1 70 16-89 30-100 (376)
121 1ka9_H Imidazole glycerol phos 20.8 40 0.0017 13.9 4.2 30 1-33 3-32 (200)
122 3n0r_A Response regulator; sig 20.5 41 0.0017 13.8 3.2 14 153-166 204-217 (286)
123 2a9v_A GMP synthase; NP_394403 20.1 42 0.0018 13.8 2.5 30 1-34 14-44 (212)
124 1o1x_A Ribose-5-phosphate isom 20.0 42 0.0018 13.8 3.3 116 1-157 13-143 (155)
No 1
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosphatase, mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=100.00 E-value=0 Score=578.26 Aligned_cols=245 Identities=29% Similarity=0.430 Sum_probs=232.3
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEE-EEEECCCHHHHHHHHHHHC
Q ss_conf 926882689868856999999998548919998179985650320224897058897110-4763272799999998750
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKK-RFAVHGTPVDCVVIALQKM 79 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~-~~~v~GtPaDcv~~~l~~l 79 (250)
|||||||||||+||||++|+++|+++| +|+||||++||||+|||||+++|+++++++.. .|.++|||||||++||+++
T Consensus 2 M~ILltNDDGi~a~gi~~L~~~l~~~g-~V~vvAP~~~~Sg~g~ait~~~~l~~~~~~~~~~~~~~GtPadcv~~al~~l 80 (254)
T 2v4n_A 2 MRILLSNDDGVHAPGIQTLAKALREFA-DVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNAL 80 (254)
T ss_dssp CEEEEECSSCTTCHHHHHHHHHHTTTS-EEEEEEESSCCTTCTTCCCCSSCCEEEECTTSCEEEETCCHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCC-CEEEEECCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCHHHHHHHHCCC
T ss_conf 679998079889888999999998669-9999931999863614656899826899547248996388156798864200
Q ss_pred CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 46454199971488853102333457778998898718985322200135676614788888499999998677866735
Q gi|255764489|r 80 SDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPNTTL 159 (250)
Q Consensus 80 ~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~~~~~~~~~~~a~~~~~~ii~~l~~~~~p~~~v 159 (250)
++++|||||||||+|.|+|.|++|||||||||||+++||||||+|++. ...|+.+++++.++++++.++.+|.+.+
T Consensus 81 ~~~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GipsIAvS~~~----~~~~~~~~~~~~~i~~~l~~~~~p~~~~ 156 (254)
T 2v4n_A 81 MRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNG----YQHYDTAAAVTCALLRGLSREPLRTGRI 156 (254)
T ss_dssp SSSCCSEEEEEEEESCCCGGGGGGCHHHHHHHTTTTSSSCEEEEEESS----SSCHHHHHHHHHHHHHHHHHSCCCSCSE
T ss_pred CCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECC----CCCHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 579999899797389747736231188999999997499834897036----6554688887899998776457654327
Q ss_pred EECCCCCCCCHHCCCCEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCEEEECCCCCCCCHH
Q ss_conf 43145678810158838913766543554278406886516997236777789885507899689889902153564889
Q gi|255764489|r 160 CNINFPRCSPEEVQKTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITTDLTDYN 239 (250)
Q Consensus 160 lNINiP~~~~~~ikg~k~t~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~e~TD~~Al~~GyISVTPL~~DlT~~~ 239 (250)
||||||.++..++||+|+|+||++.|...+.+..+++++.+||++......+..++||.+||++||||||||++|||+|+
T Consensus 157 LNIN~P~~~~~~~kGik~t~lg~r~~~~~~~~~~d~~g~~~yw~~~~~~~~~~~~~TD~~al~~GyISVTPL~~dlT~~~ 236 (254)
T 2v4n_A 157 LNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHS 236 (254)
T ss_dssp EEEEECSSCGGGCCCEEECBCCEESCCCCEEEEECTTSCEEEEECCCCCEEECSTTBHHHHHHTTCEEEEEECSCCCCGG
T ss_pred EEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCHHHHHHCCEEEEEEECCCCCCHH
T ss_conf 99866888500278659810067334655212007999749997788777889998799998799289835545674989
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999987459
Q gi|255764489|r 240 SQQYISLSLET 250 (250)
Q Consensus 240 ~l~~L~~~l~~ 250 (250)
.|++|++||++
T Consensus 237 ~l~~L~~wl~~ 247 (254)
T 2v4n_A 237 AHDVVSDWLDS 247 (254)
T ss_dssp GHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999974
No 2
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=100.00 E-value=0 Score=576.56 Aligned_cols=243 Identities=28% Similarity=0.388 Sum_probs=228.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEE----EEEEECCCHHHHHHHHH
Q ss_conf 92688268986885699999999854891999817998565032022489705889711----04763272799999998
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISK----KRFAVHGTPVDCVVIAL 76 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~----~~~~v~GtPaDcv~~~l 76 (250)
|||||||||||+||||++|+++|++ +|+|+||||++||||+|||||+++|++++++.. ..|+|+|||||||++||
T Consensus 1 M~ILlTNDDGi~s~Gi~~L~~~l~~-~~~V~vvAP~~~~S~~g~sit~~~pl~~~~~~~~~~~~~~~v~GTPaDCV~lal 79 (247)
T 1j9j_A 1 MRILVTNDDGIQSKGIIVLAELLSE-EHEVFVVAPDKERSATGHSITIHVPLWMKKVFISERVVAYSTTGTPADCVKLAY 79 (247)
T ss_dssp CEEEEECSSCTTCHHHHHHHHHHTT-TSEEEEEEESSCCTTCTTCCCCSSCCCEEECCCSSSEEEEEESSCHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCHHHEEEEE
T ss_conf 9599972799897679999999866-991999944998766624444699833456405898338973797054333901
Q ss_pred HHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 75046454199971488853102333457778998898718985322200135676614788888499999998677866
Q gi|255764489|r 77 QKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPN 156 (250)
Q Consensus 77 ~~l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~~~~~~~~~~~a~~~~~~ii~~l~~~~~p~ 156 (250)
+++++++|||||||||+|.|+|.|++|||||||||||+++||||||+||+.. +..+|+.+++++.++++++++.++|.
T Consensus 80 ~~l~~~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GipsIA~S~~~~--~~~~~~~a~~~~~~~i~~l~~~~~~~ 157 (247)
T 1j9j_A 80 NVVMDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISSANY--ESPDFEGAARFLIDFLKEFDFSLLDP 157 (247)
T ss_dssp HTTSTTCCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEESCS--SSCCHHHHHHHHHHHHHHCCGGGSCT
T ss_pred CCCCCCCCCEEEECCCCCCCCCEEEEECHHHHHHHHHCCCCCCEEEEECCCC--CCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 3546999888996554787565434521365599622346887368873678--86277999999999999997447665
Q ss_pred CCEEECCCCCCCCHHCCCCEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCEEEECCCCCCC
Q ss_conf 73543145678810158838913766543554278406886516997236777789885507899689889902153564
Q gi|255764489|r 157 TTLCNINFPRCSPEEVQKTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITTDLT 236 (250)
Q Consensus 157 ~~vlNINiP~~~~~~ikg~k~t~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~e~TD~~Al~~GyISVTPL~~DlT 236 (250)
..+||||||. .++||+|+|+||++.+...+.+..+++++.+||+.......+..++||.+||++||||||||++|||
T Consensus 158 ~~~lNvN~P~---~~~~g~k~t~~g~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~~~tD~~al~~GyISITPL~~dlT 234 (247)
T 1j9j_A 158 FTMLNINVPA---GEIKGWRFTRQSRRRWNDYFEERVSPFGEKYYWMMGEVIEDDDRDDVDYKAVREGYVSITPIHPFLT 234 (247)
T ss_dssp TCEEEEEECS---SCCCEEEECBCCCCEEEEEEEEEECTTSCEEEEEEEEEECCCCCSSBHHHHHHTTEEEEEEECSCCC
T ss_pred CCCCCCCCCH---HHCCCCEEEEECCCCCCCCCEECCCCCCCEEEEECCCCCCCCCCCCHHHHHHHCCEEEEEECCCCCC
T ss_conf 6222678982---4417867755122124664102107999727996267667889997299998699089804366776
Q ss_pred CHHHHHHHHHHHC
Q ss_conf 8899999998745
Q gi|255764489|r 237 DYNSQQYISLSLE 249 (250)
Q Consensus 237 ~~~~l~~L~~~l~ 249 (250)
+++.|++|++|||
T Consensus 235 ~~~~l~~L~~~fd 247 (247)
T 1j9j_A 235 NEQCLKKLREVYD 247 (247)
T ss_dssp CHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHC
T ss_conf 9899999998649
No 3
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=100.00 E-value=0 Score=573.51 Aligned_cols=247 Identities=31% Similarity=0.476 Sum_probs=232.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEE-EEEECCCHHHHHHHHHHHC
Q ss_conf 926882689868856999999998548919998179985650320224897058897110-4763272799999998750
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKK-RFAVHGTPVDCVVIALQKM 79 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~-~~~v~GtPaDcv~~~l~~l 79 (250)
.||||||||||+||||++|+++|+++| +||||||++||||+|||||+++|+++++++.. .|+|+|||||||++||+++
T Consensus 2 p~ILlTNDDGi~a~Gi~~L~~~l~~~g-~V~vvAP~~~~Sg~g~ait~~~~~~~~~~~~~~~~~v~GTPaDcv~~al~~~ 80 (251)
T 2phj_A 2 PTFLLVNDDGYFSPGINALREALKSLG-RVVVVAPDRNLSGVGHSLTFTEPLKMRKIDTDFYTVIDGTPADCVHLGYRVI 80 (251)
T ss_dssp CEEEEECSSCTTCHHHHHHHHHHTTTS-EEEEEEESSCCTTSCCSCCCSSCEEEEEEETTEEEETTCCHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCEEECCCCHHHEEEEEHHHH
T ss_conf 989997279888788999999998679-9999937888663556747899842588503421302797246013131433
Q ss_pred C-CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 4-645419997148885310233345777899889871898532220013567661478888849999999867786673
Q gi|255764489|r 80 S-DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPNTT 158 (250)
Q Consensus 80 ~-~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~~~~~~~~~~~a~~~~~~ii~~l~~~~~p~~~ 158 (250)
+ +++|||||||||+|.|+|.+++|||||||||||+++||||||+||... +..+|+.+.+++.++++++++..+|+++
T Consensus 81 ~~~~~PDLVvSGIN~G~N~G~~v~ySGTVgAA~ea~~~GiPaIA~S~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 158 (251)
T 2phj_A 81 LEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSAFGR--ENIMFEEIAKVCVDIVKKVLNEGIPEDT 158 (251)
T ss_dssp TTTCCCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEEECS--SSCCHHHHHHHHHHHHHHHHHHCCCTTE
T ss_pred CCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC--CCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 58999988994676874277683552999999999972998389973568--8752467899999999999860798552
Q ss_pred EEECCCCCCCCHHCCCCEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCEEEECCCCCCCCH
Q ss_conf 54314567881015883891376654355427840688651699723677778988550789968988990215356488
Q gi|255764489|r 159 LCNINFPRCSPEEVQKTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITTDLTDY 238 (250)
Q Consensus 159 vlNINiP~~~~~~ikg~k~t~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~e~TD~~Al~~GyISVTPL~~DlT~~ 238 (250)
+||||||.++.+++||+++|+||++.+...+.+..+++++.+||+.......+.+++||.+||++||||||||++|+|||
T Consensus 159 ~lNVN~P~~~~~~~~g~~~t~~g~~~~~~~~~~~~d~~g~~~y~~~~~~~~~~~~~~tD~~al~~G~ISVTPL~~d~T~~ 238 (251)
T 2phj_A 159 YLNVNIPNLRYEEIKGIKVTRQGKRAYKERVFKYIDPYGKPFYWIAAEEFGWHAEEGTDYWAVLNGYVSVTPLHLDLTNY 238 (251)
T ss_dssp EEEEEEESSCGGGCCEEEECBCCCCSSEEEEEEEECTTSCEEEEEEEESTTTTCCTTBHHHHHHTTEEEEEEEESCCBCG
T ss_pred EEEEECCCCCHHHCCCEEEEECCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCH
T ss_conf 68860788872105862899767654466425665799976899536656778999978999869918996504377597
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999987459
Q gi|255764489|r 239 NSQQYISLSLET 250 (250)
Q Consensus 239 ~~l~~L~~~l~~ 250 (250)
+.|++|++|++|
T Consensus 239 ~~L~~Lk~l~~~ 250 (251)
T 2phj_A 239 KVMKSIKYLEDS 250 (251)
T ss_dssp GGGGGGGGGGC-
T ss_pred HHHHHHHHHHHC
T ss_conf 999998788519
No 4
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/beta protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=100.00 E-value=0 Score=542.65 Aligned_cols=244 Identities=29% Similarity=0.411 Sum_probs=212.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEE---EEEEECCCHHHHHHHHHH
Q ss_conf 92688268986885699999999854891999817998565032022489705889711---047632727999999987
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISK---KRFAVHGTPVDCVVIALQ 77 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~---~~~~v~GtPaDcv~~~l~ 77 (250)
|||||||||||+||||++|+++|+++| +|+||||++||||+|||||+++|+++++++. +.|+|+|||||||++||+
T Consensus 1 M~IL~tNDDG~~a~gi~~L~~~l~~~~-~V~vvAP~~~~Sg~g~ait~~~~l~~~~~~~~~~~~~~v~GTPaDcv~~~l~ 79 (280)
T 1l5x_A 1 MKILVTNDDGVHSPGLRLLYQFALSLG-DVDVVAPESPKSATGLGITLHKPLRMYEVDLCGFRAIATSGTPSDTVYLATF 79 (280)
T ss_dssp CEEEEECSSCTTCHHHHHHHHHHGGGS-EEEEEEESSCTTTSCSSCCCSSCBCEEEEECSSSEEEEESSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCEECCCCCEEEEECCCCCEEEEECCCCHHHHHHHHH
T ss_conf 969997478989778999999998569-9899941898777768701899856999616894379955886005442133
Q ss_pred HCCCCCCCEEEECCCCCCCCCHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCC-----CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 50464541999714888531023334-577789988987189853222001356-----766147888884999999986
Q gi|255764489|r 78 KMSDKKPDLILSGVNVGTNTSNHVAY-SGTLAAAFEGSLQGIRSFALSQAYTYE-----NMIPWEVSETHAPRVLRQLLK 151 (250)
Q Consensus 78 ~l~~~~pDlViSGiN~G~N~g~~v~y-SGTvgAA~ea~~~GipsIAiS~~~~~~-----~~~~~~~a~~~~~~ii~~l~~ 151 (250)
++ +++|||||||||+|.|+|.+++| ||||||||||+++||||||+||++... ....|+.+.+++.++++++++
T Consensus 80 ~~-~~~pDlVvSGIN~G~N~g~dv~~sSGTVgAA~Ea~~~GipaIA~S~~~~~~~~~~~~~~a~~~~~~~i~~l~~~~l~ 158 (280)
T 1l5x_A 80 GL-GRKYDIVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPALAYSAYLENWNELLNNKEAVEIMGAVVSSTASYVLK 158 (280)
T ss_dssp HH-TSCCSEEEEEEEEBCCCSHHHHTTCHHHHHHHHHHHTTCCEEEEEECCSCHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HC-CCCCCEEEECCCCCCCCCEEEEECHHHHHHHHHHHHCCCCCEEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 04-89987899667676547810575558899999999819983366642068421002067899999999999999986
Q ss_pred CCCCCCC-EEECCCCCCCCHHCCCCEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCHHH-HHCCCEEEE
Q ss_conf 7786673-54314567881015883891376654355427840688651699723677778988550789-968988990
Q gi|255764489|r 152 TQIPNTT-LCNINFPRCSPEEVQKTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFA-IQHNMISVT 229 (250)
Q Consensus 152 ~~~p~~~-vlNINiP~~~~~~ikg~k~t~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~e~TD~~A-l~~GyISVT 229 (250)
+++|.+. +||||||.++..++|+ ++|+++++.|...+.+..++++..|||+.. +. .+.+++||.+| +++||||||
T Consensus 159 ~~~p~~~~vlNVNfP~~~~~~ik~-k~t~~g~~~~~~~~~~~~d~~g~~~ywl~g-~~-~~~~~~tD~~a~l~~GyISVT 235 (280)
T 1l5x_A 159 NGMPQGVDVISVNFPRRLGRGVRA-KLVKAAKLRYAQQVVERVDPRGVRYYWLYG-RD-LAPEPETDVYVVLKEGGIAIT 235 (280)
T ss_dssp HCSCTTCSEEEEEECSCCCTTCCE-EECBCCSCSBCSCCEEEECTTSCEEEECSC-SB-CCCCTTBHHHHHHTSCCEEEE
T ss_pred CCCCCCCCEEECCCCCCCCCCCCC-EEEEECCCCCCCCEEEEECCCCCEEEEECC-CC-CCCCCCCCHHHHHHCCEEEEE
T ss_conf 489867742304588664447851-599836724677237865799976886158-75-789999789999979989980
Q ss_pred CCCCCCCCHHHH-----HHHHHHHC
Q ss_conf 215356488999-----99998745
Q gi|255764489|r 230 PITTDLTDYNSQ-----QYISLSLE 249 (250)
Q Consensus 230 PL~~DlT~~~~l-----~~L~~~l~ 249 (250)
||++|||+|+++ +.|+.|+|
T Consensus 236 PL~~DlT~~d~l~~id~~~l~~~~~ 260 (280)
T 1l5x_A 236 PLTLNLNAVDAHREVDMDSLNRMVE 260 (280)
T ss_dssp EECCCCBSSCCBCCCCHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 5101687758887546999999999
No 5
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP, hydrolase; 2.05A {Thermus thermophilus HB8} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=100.00 E-value=0 Score=544.60 Aligned_cols=233 Identities=31% Similarity=0.441 Sum_probs=210.9
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEE-------EEEEECCCHHHHHH
Q ss_conf 92688268986885699999999854891999817998565032022489705889711-------04763272799999
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISK-------KRFAVHGTPVDCVV 73 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~-------~~~~v~GtPaDcv~ 73 (250)
|||||||||||+||||++|+++|+++| +||||||++||||+|||||+++|+++++... ++|+|+|||||||+
T Consensus 1 MrILlTNDDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~sit~~~p~~~~~~~~~~~~~~~~~~~v~GTPaDcV~ 79 (244)
T 2e6c_A 1 MRILVTNDDGIYSPGLWALAEAASQFG-EVFVAAPDTEQSAAGHAITIAHPVRAYPHPSPLHAPHFPAYRVRGTPADCVA 79 (244)
T ss_dssp CEEEEECSSCTTCHHHHHHHHHHTTTS-EEEEEEECSSCCCCCSSCCCSSCBEEEECCCCTTSCCCCEEEEESCHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCHHHHH
T ss_conf 969997378889767999999998679-8899950898852503652799707997425313688634898064236887
Q ss_pred HHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99875046454199971488853102333457778998898718985322200135676614788888499999998677
Q gi|255764489|r 74 IALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAYTYENMIPWEVSETHAPRVLRQLLKTQ 153 (250)
Q Consensus 74 ~~l~~l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~~~~~~~~~~~a~~~~~~ii~~l~~~~ 153 (250)
+||+++ .+|||||||||+|.|+|.|++|||||||||||+++||||||+||++..+ ..+|+.+++++.++++++++.
T Consensus 80 ~al~~~--~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~ea~~~GipsiA~S~~~~~~-~~~~~~~~~~~~~~i~~l~~~- 155 (244)
T 2e6c_A 80 LGLHLF--GPVDLVLSGVNLGSNLGHEIWHSGTVAAAKQGYLFGLSAAAFSVPLNGE-VPDFAGLRPWLLRTLETLLRL- 155 (244)
T ss_dssp HHHHHS--CSCCEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCEEEEEEECCSSS-CCCHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHCC--CCCCEEEECCCCCCCCEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCC-CCCHHHHHHHHHHHHHHHHCC-
T ss_conf 775047--9998899785288677067217347889999997399962477426676-656799999999999997544-
Q ss_pred CCCCCEEECCCCCCCCHHCCCCEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCEEEECCCC
Q ss_conf 86673543145678810158838913766543554278406886516997236777789885507899689889902153
Q gi|255764489|r 154 IPNTTLCNINFPRCSPEEVQKTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITT 233 (250)
Q Consensus 154 ~p~~~vlNINiP~~~~~~ikg~k~t~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~e~TD~~Al~~GyISVTPL~~ 233 (250)
|.+.+||||||. +.||+++|+|+++.|...+.+..+++++.+||+.. ....+.+++||.+|+++||||||||++
T Consensus 156 -~~~~~lNVN~P~----~~kg~~~t~~~~~~~~~~~~~~~d~~g~~~~~~~~-~~~~~~~~~tD~~al~~GyISVTPL~~ 229 (244)
T 2e6c_A 156 -ERPFLVNVNLPL----RPKGFLWTRQSVRAYEGVVIPGEDPMGRPFYWFAP-RPLKEAEEGTDRWAVAQGFVSATPLRL 229 (244)
T ss_dssp -CSSCEEEEECCS----SCCEEEECBCCCCCEECCEEEEECTTSCEEEEECC-EESSCCCTTBHHHHHHTTEEEEEEBCS
T ss_pred -CCCEEEEECCCC----CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECC-CCCCCCCCCCHHHHHHCCCEEEEECCC
T ss_conf -632167612686----66772787632003555543220788864899688-767788999899998699089963264
Q ss_pred CCCCHHHHHHH
Q ss_conf 56488999999
Q gi|255764489|r 234 DLTDYNSQQYI 244 (250)
Q Consensus 234 DlT~~~~l~~L 244 (250)
|||||+.|+++
T Consensus 230 DlTd~~~L~~~ 240 (244)
T 2e6c_A 230 DLTDETRLQPT 240 (244)
T ss_dssp CCBCTTCSSCC
T ss_pred CCCCHHHHHHH
T ss_conf 77584888887
No 6
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, binary complex; HET: GDP; 2.40A {Mycobacterium smegmatis str} PDB: 2gej_A*
Probab=95.11 E-value=0.032 Score=32.82 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=32.0
Q ss_pred CEEEEECCCCCCCHH-----HHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 926882689868856-----9999999985489199981799856
Q gi|255764489|r 1 MRILLTNDDGIKSKG-----LITLENIARSISDDIWICAPEMDQS 40 (250)
Q Consensus 1 m~ILitNDDG~~a~g-----l~~l~~~l~~~~~~v~vvAP~~~~S 40 (250)
|||++..+.-+..+| +..|+++|++.||+|+|++|.....
T Consensus 21 MkI~iv~~~~~p~~GG~~~~i~~La~~L~~~GheV~v~~~~~~~~ 65 (406)
T 2gek_A 21 MRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHV 65 (406)
T ss_dssp CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTS
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 889998998789998799999999999997799899994289987
No 7
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthase, two rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} PDB: 2bis_A*
Probab=94.41 E-value=0.054 Score=31.47 Aligned_cols=39 Identities=21% Similarity=0.411 Sum_probs=30.1
Q ss_pred CEEEEECCCCC--CCHHH----HHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 92688268986--88569----99999998548919998179985
Q gi|255764489|r 1 MRILLTNDDGI--KSKGL----ITLENIARSISDDIWICAPEMDQ 39 (250)
Q Consensus 1 m~ILitNDDG~--~a~gl----~~l~~~l~~~~~~v~vvAP~~~~ 39 (250)
||||+..+.-. .+-|+ ..|+++|.+.||+|+|+.|...+
T Consensus 3 MkIl~~~~~~~P~~~GG~~~~~~~La~~L~~~Gh~V~vvtp~~~~ 47 (439)
T 3fro_A 3 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGR 47 (439)
T ss_dssp CEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTC
T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 099998886798567879999999999999769989999158987
No 8
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=93.44 E-value=0.2 Score=27.95 Aligned_cols=106 Identities=17% Similarity=0.145 Sum_probs=54.8
Q ss_pred CEEEEECCCCCCCHH----HHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEE-------ECCCHH
Q ss_conf 926882689868856----999999998548919998179985650320224897058897110476-------327279
Q gi|255764489|r 1 MRILLTNDDGIKSKG----LITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFA-------VHGTPV 69 (250)
Q Consensus 1 m~ILitNDDG~~a~g----l~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~-------v~GtPa 69 (250)
|||++.- +-+.| ..+|+++|.+.||+|+++++....+-.- ...++...+...... ...+..
T Consensus 8 ~hi~~~~---~p~~GH~~p~l~la~~L~~~GH~V~~~t~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (430)
T 2iyf_A 8 AHIAMFS---IAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVA-----ATGPRPVLYHSTLPGPDADPEAWGSTLL 79 (430)
T ss_dssp CEEEEEC---CSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHH-----TTSCEEEECCCCSCCTTSCGGGGCSSHH
T ss_pred CEEEEEC---CCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-----HCCCEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 8899967---8745079999999999997889899997821677788-----6698788716778743235134566789
Q ss_pred HHH--------H--HHHH-HCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 999--------9--9987-50464541999714888531023334577789988987189853222001
Q gi|255764489|r 70 DCV--------V--IALQ-KMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAY 127 (250)
Q Consensus 70 Dcv--------~--~~l~-~l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~ 127 (250)
+.. . -.+. .+...+||+||+-. ....+.+-|..+|+|.+.++...
T Consensus 80 ~~~~~~~~~~~~~l~~l~~~~~~~~pD~vi~~~-------------~~~~~~~~a~~~~iP~v~~~~~~ 135 (430)
T 2iyf_A 80 DNVEPFLNDAIQALPQLADAYADDIPDLVLHDI-------------TSYPARVLARRWGVPAVSLSPNL 135 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCSEEEEET-------------TCHHHHHHHHHHTCCEEEEESSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC-------------CCHHHHHHHHHCCCCEEEEECCC
T ss_conf 999999999999999999998604983999757-------------30269999998199989995565
No 9
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=93.08 E-value=0.2 Score=27.98 Aligned_cols=39 Identities=13% Similarity=0.275 Sum_probs=29.8
Q ss_pred CEEEEECCC----CCCC---------HH----HHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 926882689----8688---------56----999999998548919998179985
Q gi|255764489|r 1 MRILLTNDD----GIKS---------KG----LITLENIARSISDDIWICAPEMDQ 39 (250)
Q Consensus 1 m~ILitNDD----G~~a---------~g----l~~l~~~l~~~~~~v~vvAP~~~~ 39 (250)
|||+|+|.. |.++ -| +..|++.|.+.||+|+|++|..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~pP~~~GG~E~~v~~La~~L~~~GH~V~v~~~~~~~ 59 (342)
T 2iuy_A 4 LKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSP 59 (342)
T ss_dssp CEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSC
T ss_pred CEEEEECCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 37999766655777776766989998859999999999999769989999259987
No 10
>2p6p_A Glycosyl transferase; GT-B family, X-RAY-diffraction,urdamycina- biosynthesis; 1.88A {Streptomyces fradiae}
Probab=90.71 E-value=0.35 Score=26.50 Aligned_cols=35 Identities=29% Similarity=0.344 Sum_probs=26.8
Q ss_pred CEEEEECCCCCCCHH----HHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 926882689868856----99999999854891999817998
Q gi|255764489|r 1 MRILLTNDDGIKSKG----LITLENIARSISDDIWICAPEMD 38 (250)
Q Consensus 1 m~ILitNDDG~~a~g----l~~l~~~l~~~~~~v~vvAP~~~ 38 (250)
||||+.-. -+.| +..|+++|++.||+|+++.+...
T Consensus 1 Mrilf~~~---~~~GH~~~~l~LA~aL~~~GH~V~v~t~~~~ 39 (384)
T 2p6p_A 1 MRILFVAA---GSPATVFALAPLATAARNAGHQVVMAANQDM 39 (384)
T ss_dssp CEEEEECC---SSHHHHHHHHHHHHHHHHTTCEEEEEECGGG
T ss_pred CEEEEECC---CCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
T ss_conf 94999889---9661899999999999988998999948526
No 11
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=90.69 E-value=0.31 Score=26.81 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=26.9
Q ss_pred CEEEEECCC---CCCCHHH----HHHHHHHHHCCCCEEEECCC
Q ss_conf 926882689---8688569----99999998548919998179
Q gi|255764489|r 1 MRILLTNDD---GIKSKGL----ITLENIARSISDDIWICAPE 36 (250)
Q Consensus 1 m~ILitNDD---G~~a~gl----~~l~~~l~~~~~~v~vvAP~ 36 (250)
||||...-- -+..-|| ..|+++|++.||+|+|+.|.
T Consensus 1 Mkil~i~~e~~p~~~~GGl~~v~~~La~aL~~~Gh~V~VitP~ 43 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPG 43 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred CEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9899996875061245789999999999999769979999679
No 12
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=89.33 E-value=0.76 Score=24.44 Aligned_cols=82 Identities=7% Similarity=0.158 Sum_probs=43.1
Q ss_pred CEEEEECCCCCCCHH----HHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHH
Q ss_conf 926882689868856----9999999985489199981799856503202248970588971104763272799999998
Q gi|255764489|r 1 MRILLTNDDGIKSKG----LITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIAL 76 (250)
Q Consensus 1 m~ILitNDDG~~a~g----l~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l 76 (250)
|||+.+....+---| +..|+++|.+.||+|+|+++..+.. .-..+.+..+....+.-.+....-...-.
T Consensus 1 m~i~~~~~~y~p~GG~e~~~~~la~~L~~~Gh~V~v~t~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (374)
T 2iw1_A 1 MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGD-------CPKAFELIQVPVKSHTNHGRNAEYYAWVQ 73 (374)
T ss_dssp -CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESEECSC-------CCTTCEEEECCCCCSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC-------CCCCEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 97999948679999889999999999997799699996678777-------89862899767645353023578999999
Q ss_pred HHCCCCCCCEEEE
Q ss_conf 7504645419997
Q gi|255764489|r 77 QKMSDKKPDLILS 89 (250)
Q Consensus 77 ~~l~~~~pDlViS 89 (250)
..+...+||+|++
T Consensus 74 ~~~~~~~~d~v~~ 86 (374)
T 2iw1_A 74 NHLKEHPADRVVG 86 (374)
T ss_dssp HHHHHSCCSEEEE
T ss_pred HHHHHCCCCEEEE
T ss_conf 9998558868985
No 13
>1rrv_A Glycosyltransferase GTFD; GT-B, rossmann fold; HET: DVV TYD; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=88.99 E-value=0.46 Score=25.75 Aligned_cols=37 Identities=24% Similarity=0.515 Sum_probs=28.8
Q ss_pred CEEEEECCCCCCCHH----HHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 926882689868856----9999999985489199981799856
Q gi|255764489|r 1 MRILLTNDDGIKSKG----LITLENIARSISDDIWICAPEMDQS 40 (250)
Q Consensus 1 m~ILitNDDG~~a~g----l~~l~~~l~~~~~~v~vvAP~~~~S 40 (250)
||||++- .-+.| +.+|+++|++.||+|+++++....+
T Consensus 1 MrIl~~~---~gt~Ghv~P~l~lA~~L~~rGh~V~~~t~~~~~~ 41 (416)
T 1rrv_A 1 MRVLLSV---CGTRGDVEIGVALADRLKALGVQTRMCAPPAAEE 41 (416)
T ss_dssp CEEEEEE---ESCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHH
T ss_pred CEEEEEC---CCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHH
T ss_conf 9499987---9866789999999999998799899995856777
No 14
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=86.07 E-value=1.1 Score=23.52 Aligned_cols=37 Identities=35% Similarity=0.625 Sum_probs=28.5
Q ss_pred CEEEEECCCCCCCHH----HHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 926882689868856----9999999985489199981799856
Q gi|255764489|r 1 MRILLTNDDGIKSKG----LITLENIARSISDDIWICAPEMDQS 40 (250)
Q Consensus 1 m~ILitNDDG~~a~g----l~~l~~~l~~~~~~v~vvAP~~~~S 40 (250)
||||+.= +-+-| +.+|++.|++.||+|++++|..-+.
T Consensus 1 M~il~~~---~gt~Ghv~P~lala~~L~~~Gh~V~~~~~~~~~~ 41 (415)
T 1iir_A 1 MRVLLAT---CGSRGDTEPLVALAVRVRDLGADVRMCAPPDCAE 41 (415)
T ss_dssp CEEEEEC---CSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHH
T ss_pred CEEEEEC---CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
T ss_conf 9799988---9864689999999999998799899995830777
No 15
>1g2i_A Protease I; intracellular protease, ATP-independent intracellular protease, catalytical triad, PFPI, cysteine protease, nucleophIle elbow; 2.00A {Pyrococcus horikoshii} SCOP: c.23.16.2
Probab=85.36 E-value=0.93 Score=23.90 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=33.5
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 92688268986885699999999854891999817998
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMD 38 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~ 38 (250)
|||++-=-||++.--+....+.+++.|++|.+++|+.+
T Consensus 1 MkI~il~~~gf~~~E~~~~~~~l~~~g~~v~~vs~~~~ 38 (166)
T 1g2i_A 1 MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERG 38 (166)
T ss_dssp CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 98999958985899999999999988998999928986
No 16
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=84.36 E-value=0.55 Score=25.28 Aligned_cols=109 Identities=15% Similarity=0.147 Sum_probs=53.3
Q ss_pred EEEEECCCCC-CCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEE--EE------EECCCH----
Q ss_conf 2688268986-8856999999998548919998179985650320224897058897110--47------632727----
Q gi|255764489|r 2 RILLTNDDGI-KSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKK--RF------AVHGTP---- 68 (250)
Q Consensus 2 ~ILitNDDG~-~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~--~~------~v~GtP---- 68 (250)
+||++-=-|. +.--..+|+++|.+.||+|+++++...+...-. ..+++..+... .+ ......
T Consensus 6 ~il~~~~~g~GH~~p~l~la~~L~~rGh~V~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (402)
T 3ia7_A 6 HILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKA-----AGAEVVLYKSEFDTFHVPEVVKQEDAETQLH 80 (402)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHH-----TTCEEEECCCGGGTSSSSSSSCCTTHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH-----CCCEEEECCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 89998998464799999999999988898999978106668886-----6986897377644234543223344215678
Q ss_pred ---HHH---HHHHHHH-CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf ---999---9999875-0464541999714888531023334577789988987189853222001
Q gi|255764489|r 69 ---VDC---VVIALQK-MSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAY 127 (250)
Q Consensus 69 ---aDc---v~~~l~~-l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~ 127 (250)
..+ ..-++.. +...+||+|++.. .....++..+...++|.+.++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~pD~vi~d~------------~~~~~~~~~a~~~~~P~v~~~~~~ 134 (402)
T 3ia7_A 81 LVYVRENVAILRAAEEALGDNPPDLVVYDV------------FPFIAGRLLAARWDRPAVRLTGGF 134 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCSEEEEES------------TTHHHHHHHHHHHTCCEEEEESSC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEECC------------CCHHHHHHHHHHHCCCEEEEEECC
T ss_conf 999999999999999987434986896267------------400279999998089879997224
No 17
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis}
Probab=83.86 E-value=0.94 Score=23.86 Aligned_cols=84 Identities=12% Similarity=0.095 Sum_probs=41.8
Q ss_pred CEEEEEC---CCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHH--HHH
Q ss_conf 9268826---89868856999999998548919998179985650320224897058897110476327279999--999
Q gi|255764489|r 1 MRILLTN---DDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCV--VIA 75 (250)
Q Consensus 1 m~ILitN---DDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv--~~~ 75 (250)
||||+.- --|. +--+..|++.|.+.||+|+|+++....... .....+.+..+....+..-..|.-.. ...
T Consensus 16 MKI~iv~~P~~GG~-~~~~~~La~~L~~~Gh~V~vit~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (394)
T 2jjm_A 16 LKIGITCYPSVGGS-GVVGTELGKQLAERGHEIHFITSGLPFRLN----KVYPNIYFHEVTVNQYSVFQYPPYDLALASK 90 (394)
T ss_dssp CEEEEECCC--CHH-HHHHHHHHHHHHHTTCEEEEECSSCC--------CCCTTEEEECCCCC----CCSCCHHHHHHHH
T ss_pred CEEEEECCCCCCCH-HHHHHHHHHHHHHCCCEEEEEECCCCCCCC----CCCCCEEEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 77999899999959-999999999999779989999479986521----1379706997046666500146136999999
Q ss_pred HH-HCCCCCCCEEEE
Q ss_conf 87-504645419997
Q gi|255764489|r 76 LQ-KMSDKKPDLILS 89 (250)
Q Consensus 76 l~-~l~~~~pDlViS 89 (250)
+. .+...+||+|..
T Consensus 91 l~~~~~~~~~Dii~~ 105 (394)
T 2jjm_A 91 MAEVAQRENLDILHV 105 (394)
T ss_dssp HHHHHHHHTCSEEEE
T ss_pred HHHHHHHCCCCEEEE
T ss_conf 999998749968998
No 18
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=83.02 E-value=1.3 Score=22.98 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=31.8
Q ss_pred EEEEC---CCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCC
Q ss_conf 68826---8986885699999999854891999817998565
Q gi|255764489|r 3 ILLTN---DDGIKSKGLITLENIARSISDDIWICAPEMDQSC 41 (250)
Q Consensus 3 ILitN---DDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~ 41 (250)
|+|++ =||.+..-+...+.+|++.|.+|.+++|+.+|--
T Consensus 11 viLsg~g~~DG~E~~E~~~p~~~L~raG~~V~~~sp~~~~~~ 52 (232)
T 1vhq_A 11 VILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVD 52 (232)
T ss_dssp EECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSC
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 996688787750298999999999988997999957998553
No 19
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=82.75 E-value=1.6 Score=22.42 Aligned_cols=38 Identities=8% Similarity=-0.061 Sum_probs=24.8
Q ss_pred CEEEEECCCCC-CCHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 92688268986-885699999999854891999817998
Q gi|255764489|r 1 MRILLTNDDGI-KSKGLITLENIARSISDDIWICAPEMD 38 (250)
Q Consensus 1 m~ILitNDDG~-~a~gl~~l~~~l~~~~~~v~vvAP~~~ 38 (250)
+|||+..=-|. +---+.+|++.|.+.||+|+++.+...
T Consensus 13 ~~ilf~~~p~~GHv~p~l~la~~L~~rGH~V~v~~~~~~ 51 (424)
T 2iya_A 13 RHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEF 51 (424)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGG
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
T ss_conf 849997787163799999999999988898999968416
No 20
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=81.73 E-value=1.4 Score=22.73 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=52.7
Q ss_pred CEEEEECCCCCCCHH----HHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEE--------EEEEECCCH
Q ss_conf 926882689868856----99999999854891999817998565032022489705889711--------047632727
Q gi|255764489|r 1 MRILLTNDDGIKSKG----LITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISK--------KRFAVHGTP 68 (250)
Q Consensus 1 m~ILitNDDG~~a~g----l~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~--------~~~~v~GtP 68 (250)
||||++=- | +-| +.+|+++|++.||+|+++++..-+.-.- . ..++...+.. ......+..
T Consensus 1 m~i~~~~~-G--t~G~v~P~lalA~~L~~rGh~V~~~t~~~~~~~v~---~--~g~~~~~i~~~~~~~~~~~~~~~~~~~ 72 (404)
T 3h4t_A 1 MGVLITGC-G--SRGDTEPLVALAARLRELGADARMCLPPDYVERCA---E--VGVPMVPVGRAVRAGAREPGELPPGAA 72 (404)
T ss_dssp -CEEEEEE-S--SHHHHHHHHHHHHHHHHTTCCEEEEECGGGHHHHH---H--TTCCEEECSSCSSGGGSCTTCCCTTCG
T ss_pred CEEEEECC-C--CHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHH---H--CCCEEEECCCCHHHHHHCHHHHHHHHH
T ss_conf 96999917-6--82489999999999998799799997801777898---7--798699878258766028777779999
Q ss_pred H---HHHHHHHHHC--CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9---9999998750--46454199971488853102333457778998898718985322200
Q gi|255764489|r 69 V---DCVVIALQKM--SDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQA 126 (250)
Q Consensus 69 a---Dcv~~~l~~l--~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~ 126 (250)
. ....--+..+ ..+.||+||..- ++.....++.-+...+++.+.....
T Consensus 73 ~~~~~~~~~~~~~l~~~~~~~D~vi~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (404)
T 3h4t_A 73 EVVTEVVAEWFDKVPAAIEGCDAVVTTG----------LLPAAVAVRSMAEKLGIPYRYTVLS 125 (404)
T ss_dssp GGHHHHHHHHHHHHHHHHTTCSEEEEEE----------CHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEECC----------CCHHHHHHHHHHHHCCCCCEECCCC
T ss_conf 9999999999999998427989999999----------7178899999998618872002457
No 21
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=81.71 E-value=1.2 Score=23.24 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=26.2
Q ss_pred CEEEEECCCCCC----CHH----HHHHHHHHHHCCCCEEEECCCC
Q ss_conf 926882689868----856----9999999985489199981799
Q gi|255764489|r 1 MRILLTNDDGIK----SKG----LITLENIARSISDDIWICAPEM 37 (250)
Q Consensus 1 m~ILitNDDG~~----a~g----l~~l~~~l~~~~~~v~vvAP~~ 37 (250)
||||....- +. .-| ...|.++|.+.||+|.|+.|.-
T Consensus 1 M~I~~v~~e-~~p~~~~GGl~~~v~~L~~aL~~~Gh~V~VitP~y 44 (485)
T 2qzs_A 1 MQVLHVCSE-MFPLLKTGGLADVIGALPAAQIADGVDARVLLPAF 44 (485)
T ss_dssp CEEEEECSC-BTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred CEEEEEEEE-ECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 979999772-25623546699999999999997699799996898
No 22
>3iaa_A CALG2; glycosyltransferase, calicheamicin, TDP, enediyne, TR; HET: TYD; 2.50A {Micromonospora echinospora}
Probab=80.39 E-value=3.1 Score=20.73 Aligned_cols=107 Identities=14% Similarity=0.162 Sum_probs=54.3
Q ss_pred EEEEECCCCCCCHH----HHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEE--------EEECCCH-
Q ss_conf 26882689868856----9999999985489199981799856503202248970588971104--------7632727-
Q gi|255764489|r 2 RILLTNDDGIKSKG----LITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKR--------FAVHGTP- 68 (250)
Q Consensus 2 ~ILitNDDG~~a~g----l~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~--------~~v~GtP- 68 (250)
|||+.. +-+.| ..+|+++|.+.||+|+++++...+...-. ..+++..+.... +.....+
T Consensus 22 ~il~~~---~~~~GH~~p~l~la~~L~~rGH~V~v~t~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (416)
T 3iaa_A 22 HLLIVN---VASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEPVRA-----AGATVVPYQSEIIDADAAEVFGSDDLGV 93 (416)
T ss_dssp EEEEEC---CSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHH-----TTCEEEECCCSGGGCCHHHHHHSCSSCH
T ss_pred EEEEEC---CCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----CCCEEEECCCCCCCCCCHHCCCCCCCCH
T ss_conf 089977---99563799999999999978898999968236778986-----7987997277656533011036543113
Q ss_pred ----------HHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf ----------999999987504645419997148885310233345777899889871898532220013
Q gi|255764489|r 69 ----------VDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAYT 128 (250)
Q Consensus 69 ----------aDcv~~~l~~l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~~ 128 (250)
...+..-...+...+||+|++.. .. + ..+..-+...++|.+.++..+.
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~i~~~~pDvv~~~~-----~~----~---~~~~~~a~~~~~p~v~~~~~~~ 151 (416)
T 3iaa_A 94 RPHLMYLRENVSVLRATAEALDGDVPDLVLYDD-----FP----F---IAGQLLAARWRRPAVRLSAAFA 151 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCSEEEEES-----TT----H---HHHHHHHHHHTCCEEEEESSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC-----CC----C---HHHHHHHHHCCCCEEEEECCCC
T ss_conf 468999999999999999997268981899826-----43----0---2688999970898699814532
No 23
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, symmetric dimer, signaling protein; NMR {Helicobacter pylori J99}
Probab=75.00 E-value=1.4 Score=22.82 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=22.6
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 926882689868856999999998548919998
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC 33 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv 33 (250)
|||||..||-.-+ ..|.+.|+..|++|.++
T Consensus 1 MrILiVeDd~~~~---~~l~~~L~~~g~~v~~a 30 (223)
T 2hqr_A 1 MRVLLIEKNSVLG---GEIEKGLNVKGFMADVT 30 (223)
T ss_dssp CCEEEECSCHHHH---HHHHHHHGGGTCCEEEE
T ss_pred CEEEEEECCHHHH---HHHHHHHHHCCCEEEEE
T ss_conf 9899993899999---99999999879999998
No 24
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate assisted catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=74.89 E-value=2.8 Score=21.00 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=56.3
Q ss_pred CEEEEECCCC------------CCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEE---EEC
Q ss_conf 9268826898------------6885699999999854891999817998565032022489705889711047---632
Q gi|255764489|r 1 MRILLTNDDG------------IKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRF---AVH 65 (250)
Q Consensus 1 m~ILitNDDG------------~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~---~v~ 65 (250)
|||++.=+=+ =..--+..|+++|.+.||+|+|+++....+ ....+.....+++.++....+ .-.
T Consensus 21 ~ri~~vs~~~~P~~~~g~~d~GG~e~~v~~La~~L~~~Gh~V~v~t~~~~~~-~~~~~~~~~~v~i~~i~~~~~~~~~~~ 99 (438)
T 3c48_A 21 MRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPS-QGEIVRVAENLRVINIAAGPYEGLSKE 99 (438)
T ss_dssp CEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGG-GCSEEEEETTEEEEEECCSCSSSCCGG
T ss_pred CEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCCEECCCCEEEEEECCCCCCCCCHH
T ss_conf 7799984663630005999867999999999999997799699995478887-744022269718998057862335477
Q ss_pred CCHHHHH-----HHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 7279999-----9998750464541999714888531023334577789988987189853222
Q gi|255764489|r 66 GTPVDCV-----VIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALS 124 (250)
Q Consensus 66 GtPaDcv-----~~~l~~l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS 124 (250)
..|.... ..........+||+|.+- + ..++-++ ..-+...++|-|.-.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~Diih~~-----~-----~~~~~~~-~~~~~~~~~p~v~~~ 152 (438)
T 3c48_A 100 ELPTQLAAFTGGMLSFTRREKVTYDLIHSH-----Y-----WLSGQVG-WLLRDLWRIPLIHTA 152 (438)
T ss_dssp GGGGGHHHHHHHHHHHHHHHTCCCSEEEEE-----H-----HHHHHHH-HHHHHHHTCCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEC-----C-----CHHHHHH-HHHHHHCCCCEEEEE
T ss_conf 879999999999999999707996199989-----8-----4378999-999986599889992
No 25
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=73.28 E-value=3.7 Score=20.22 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=28.4
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 92688268986885699999999854891999817998
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMD 38 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~ 38 (250)
|||||..||... -..|.+.|+..|++|..++|..+
T Consensus 13 l~vLvvdd~~~~---~~~l~~~L~~~G~~v~~~~~~~~ 47 (196)
T 1qo0_D 13 LQVLVLNPPGEV---SDALVLQLIRIGCSVRQCWPPPE 47 (196)
T ss_dssp CEEEEESCTTHH---HHHHHHHHHHHTCEEEEECSCCS
T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEECCCCHHH
T ss_conf 869999579999---99999999986998871699799
No 26
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=71.35 E-value=3.5 Score=20.38 Aligned_cols=102 Identities=15% Similarity=0.197 Sum_probs=59.9
Q ss_pred HHHHHHHHH---HCCC--CEEE--ECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHH-CCCCCCCEE
Q ss_conf 999999998---5489--1999--8179985650320224897058897110476327279999999875-046454199
Q gi|255764489|r 16 LITLENIAR---SISD--DIWI--CAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQK-MSDKKPDLI 87 (250)
Q Consensus 16 l~~l~~~l~---~~~~--~v~v--vAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~-l~~~~pDlV 87 (250)
..+|..+|+ +.|. +|++ +.|...+...=.++..+-. +...+.++.++-.-+.+ +...|.. +....||||
T Consensus 40 ~~AlE~Al~lkE~~g~~~~Vt~ls~Gp~~a~~~Lr~alAmGaD-~av~v~d~~~~~~d~~a--tA~~LA~~i~~~~~DLI 116 (264)
T 1o97_C 40 DFSLEEAMKIKESSDTDVEVVVVSVGPDRVDESLRKCLAKGAD-RAVRVWDDAAEGSDAIV--VGRILTEVIKKEAPDMV 116 (264)
T ss_dssp HHHHHHHHHHHHHCSSCCEEEEEEESCGGGHHHHHHHHHTTCS-EEEEECCGGGTTCCHHH--HHHHHHHHHHHHCCSEE
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHCCC-EEEEEECCCCCCCCHHH--HHHHHHHHHHHCCCCEE
T ss_conf 9999999999844799569999981508889999999972797-26999605777878999--99999999974399999
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9714888531023334577789988987189853222001
Q gi|255764489|r 88 LSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAY 127 (250)
Q Consensus 88 iSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~ 127 (250)
+.|--.-. .++|.||+.+ |.++|+|.+..-...
T Consensus 117 l~G~qs~D------~~tgqvg~~l-Ae~Lg~p~vt~v~~~ 149 (264)
T 1o97_C 117 FAGVQSSD------QAYASTGISV-ASYLNWPHAAVVADL 149 (264)
T ss_dssp EEESCCTT------TCCCCHHHHH-HHHHTCCEEEEEEEE
T ss_pred EEECCCCC------CCCCCHHHHH-HHHHCCCCEEEEEEE
T ss_conf 99143469------9988342899-998199815678888
No 27
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=70.69 E-value=4.9 Score=19.49 Aligned_cols=80 Identities=11% Similarity=0.199 Sum_probs=48.6
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250)
|||||.-||=.. .+.|.+.|+..|++|..+ .+ +.+ |+..+.
T Consensus 1 mrILvVdDd~~~---~~~l~~~L~~~G~~v~~a-~~-------------------------------~~~----al~~l~ 41 (121)
T 2pl1_A 1 MRVLVVEDNALL---RHHLKVQIQDAGHQVDDA-ED-------------------------------AKE----ADYYLN 41 (121)
T ss_dssp CEEEEECSCHHH---HHHHHHHHHHTTCEEEEE-SS-------------------------------HHH----HHHHHH
T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEEE-CC-------------------------------HHH----HHHHHH
T ss_conf 989999689999---999999999879999998-99-------------------------------999----999964
Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 645419997148885310233345777899889871898532220
Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250)
Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250)
..+||+||.-++...--|.+++ ..+-..-..+|-|.+|.
T Consensus 42 ~~~~dlii~D~~mp~~dG~e~~------~~lr~~~~~~pii~lt~ 80 (121)
T 2pl1_A 42 EHIPDIAIVDLGLPDEDGLSLI------RRWRSNDVSLPILVLTA 80 (121)
T ss_dssp HSCCSEEEECSCCSSSCHHHHH------HHHHHTTCCSCEEEEES
T ss_pred CCCCCEEEECCCCCCCCCHHHH------HHHHHCCCCCCEEEEEC
T ss_conf 5899899988999998747899------99996399981899978
No 28
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide complex; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=70.25 E-value=2.8 Score=20.95 Aligned_cols=108 Identities=17% Similarity=0.167 Sum_probs=50.9
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250)
||||||---|+= | ..|++.|.+.||+|+++.= -.++.-..+.-...+ ..+..|=+-.+.+.-++...
T Consensus 21 MkILVTGgtGfi--G-~~lv~~Ll~~G~~V~~~d~--~~~~~~~~~~~~~~~-------~~~~~Dl~d~~~l~~~~~~~- 87 (330)
T 2pzm_A 21 MRILITGGAGCL--G-SNLIEHWLPQGHEILVIDN--FATGKREVLPPVAGL-------SVIEGSVTDAGLLERAFDSF- 87 (330)
T ss_dssp CEEEEETTTSHH--H-HHHHHHHGGGTCEEEEEEC--CSSSCGGGSCSCTTE-------EEEECCTTCHHHHHHHHHHH-
T ss_pred CEEEEECCCCHH--H-HHHHHHHHHCCCEEEEEEC--CCCCCHHHHCCCCCC-------EEEEEECCCHHHHHHHHHHC-
T ss_conf 769998987789--9-9999999978698999978--887777560313596-------69983346868867888614-
Q ss_pred CCCCCEEEE-CCCCCCCC----CHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 645419997-14888531----02333457778998898718985322
Q gi|255764489|r 81 DKKPDLILS-GVNVGTNT----SNHVAYSGTLAAAFEGSLQGIRSFAL 123 (250)
Q Consensus 81 ~~~pDlViS-GiN~G~N~----g~~v~ySGTvgAA~ea~~~GipsIAi 123 (250)
.++.++- ......+. .......||.-..-.+...|++.+-+
T Consensus 88 --~~~~v~~~~~~~~~~~~~~~~~~~nv~~~~~~l~~~~~~~~~~~v~ 133 (330)
T 2pzm_A 88 --KPTHVVHSAAAYKDPDDWAEDAATNVQGSINVAKAASKAGVKRLLN 133 (330)
T ss_dssp --CCSEEEECCCCCSCTTCHHHHHHHHTHHHHHHHHHHHHHTCSEEEE
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf --5136777653011002366767779787888899999718842999
No 29
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=69.71 E-value=4.3 Score=19.82 Aligned_cols=37 Identities=5% Similarity=0.144 Sum_probs=24.9
Q ss_pred CEEEEECCCCCCCHHH----HHHHHHHHHCCCCEEEECCCCC
Q ss_conf 9268826898688569----9999999854891999817998
Q gi|255764489|r 1 MRILLTNDDGIKSKGL----ITLENIARSISDDIWICAPEMD 38 (250)
Q Consensus 1 m~ILitNDDG~~a~gl----~~l~~~l~~~~~~v~vvAP~~~ 38 (250)
||||+..+.-..--|+ +.|.++|++ +|+|+|+++...
T Consensus 1 MKIl~i~~~~~~~~G~~~~~~~l~~~L~~-~heV~v~~~~~~ 41 (413)
T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIVPRISK-AHEVIVFGIHAF 41 (413)
T ss_dssp CEEEEEEECTTCCSHHHHHHHHHHHHHTT-TSEEEEEEESCC
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHC-CCCEEEEECCCC
T ss_conf 94899889999988399999999999865-898999975788
No 30
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, dimer; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 1zy2_A*
Probab=67.47 E-value=5.5 Score=19.19 Aligned_cols=30 Identities=20% Similarity=0.129 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 926882689868856999999998548919998
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC 33 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv 33 (250)
|||||.-||=.- ...|.+.|+..|++|..+
T Consensus 1 mrILiVDDd~~~---~~~l~~~L~~~G~~V~~a 30 (387)
T 1ny5_A 1 MNVLVIEDDKVF---RGLLEEYLSMKGIKVESA 30 (387)
T ss_dssp CEEEEECCCHHH---HHHHHHHHHHHTCEEEEE
T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEEE
T ss_conf 979999488999---999999999779999998
No 31
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=67.23 E-value=6.6 Score=18.71 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 9268826898688569999999985489199981
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICA 34 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvA 34 (250)
||||||=--|+ -|- .|++.|.+.|++|+.+.
T Consensus 1 MkIlV~GatG~--iG~-~l~~~L~~~G~~V~~~~ 31 (221)
T 3ew7_A 1 MKIGIIGATGR--AGS-RILEEAKNRGHEVTAIV 31 (221)
T ss_dssp CEEEEETTTSH--HHH-HHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCCH--HHH-HHHHHHHHCCCEEEEEE
T ss_conf 94999998818--999-99999997869899998
No 32
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=66.13 E-value=6.8 Score=18.59 Aligned_cols=105 Identities=16% Similarity=0.139 Sum_probs=57.0
Q ss_pred HHHHHHHHH--H-CC-CCEEE--ECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHH-CCCCCCCEEE
Q ss_conf 999999998--5-48-91999--8179985650320224897058897110476327279999999875-0464541999
Q gi|255764489|r 16 LITLENIAR--S-IS-DDIWI--CAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQK-MSDKKPDLIL 88 (250)
Q Consensus 16 l~~l~~~l~--~-~~-~~v~v--vAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~-l~~~~pDlVi 88 (250)
..+|..+++ + .+ ..|++ +.|..-....=.++..+-. +...+.+..++-..+-+-.....+.. .....||||+
T Consensus 43 ~~AlE~Al~lke~~~g~~v~v~s~Gp~~a~~~Lr~ala~GaD-~a~li~d~~~~~~~~~~~~~a~~~a~~~~~~~~DLIl 121 (255)
T 1efv_B 43 EIAVEEAVRLKEKKLVKEVIAVSCGPAQCQETIRTALAMGAD-RGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVL 121 (255)
T ss_dssp HHHHHHHHHHHHTTSCSEEEEEEEESTTHHHHHHHHHHHTCS-EEEEEECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 999999999865179843899996807889999998626898-0689860421235544999999999986454999999
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 7148885310233345777899889871898532220013
Q gi|255764489|r 89 SGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAYT 128 (250)
Q Consensus 89 SGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~~ 128 (250)
.|--.-. .++|-||+.. |.++|+|.+..-....
T Consensus 122 ~G~~s~D------~~tgqvg~~l-Ae~Lg~P~vt~v~~i~ 154 (255)
T 1efv_B 122 LGKQAID------DDCNQTGQMT-AGFLDWPQGTFASQVT 154 (255)
T ss_dssp EESCCTT------TCCCCHHHHH-HHHHTCCEEEEEEEEE
T ss_pred EECCCCC------CCCCCHHHHH-HHHHCCCCEEEEEEEE
T ss_conf 9211326------8989078999-9985887053799999
No 33
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=65.07 E-value=3.4 Score=20.44 Aligned_cols=30 Identities=17% Similarity=0.044 Sum_probs=22.5
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 926882689868856999999998548919998
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC 33 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv 33 (250)
|||||.-||=.- .+.|.+.|+..|++|..+
T Consensus 19 mrILvVEDd~~~---~~~l~~~L~~~G~~v~~a 48 (137)
T 2pln_A 19 MRVLLIEKNSVL---GGEIEKGLNVKGFMADVT 48 (137)
T ss_dssp SEEEEECSCHHH---HHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEEE
T ss_conf 889999599999---999999999889999998
No 34
>1sg0_A NRH dehydrogenase [quinone] 2; quinone reductase 2, resveratrol, oxidoreductase; HET: FAD STL; 1.50A {Homo sapiens} SCOP: c.23.5.3 PDB: 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* 2qx6_A* 2qx8_A* 2qx9_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 2bzs_A*
Probab=62.12 E-value=6 Score=18.92 Aligned_cols=33 Identities=3% Similarity=-0.035 Sum_probs=17.2
Q ss_pred CEEEEECC----CCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 92688268----9868856999999998548919998
Q gi|255764489|r 1 MRILLTND----DGIKSKGLITLENIARSISDDIWIC 33 (250)
Q Consensus 1 m~ILitND----DG~~a~gl~~l~~~l~~~~~~v~vv 33 (250)
||||+-|- ++..+-=+++..+.+++.|++|.++
T Consensus 3 mKvLiI~g~P~~~S~s~~l~~~~~~~l~~~g~ev~~~ 39 (230)
T 1sg0_A 3 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVS 39 (230)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 8899998289985689999999999999679979999
No 35
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isoprenoid biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=60.35 E-value=8.8 Score=17.92 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCE
Q ss_conf 9868856999999998548919998179985650
Q gi|255764489|r 9 DGIKSKGLITLENIARSISDDIWICAPEMDQSCL 42 (250)
Q Consensus 9 DG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~ 42 (250)
||-+-----....+|+..|.+|.++||+.+|.-.
T Consensus 37 DGsEi~Eav~~l~~L~raG~~v~~~aPd~~q~~v 70 (242)
T 3l3b_A 37 DGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQV 70 (242)
T ss_dssp TSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCE
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEE
T ss_conf 7422979999999999889979999469875512
No 36
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=56.56 E-value=7.7 Score=18.27 Aligned_cols=99 Identities=10% Similarity=0.054 Sum_probs=49.8
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250)
||||||=--|.- | +.|++.|.+.||+|+.+.-..++. .....+. .-..+++..++...++.
T Consensus 1 MkIlV~GatG~i--G-~~lv~~L~~~G~~V~~~~R~~~~~------~~~~~~~-------~~~~~~~~~~~~~~~~~--- 61 (224)
T 3h2s_A 1 MKIAVLGATGRA--G-SAIVAEARRRGHEVLAVVRDPQKA------ADRLGAT-------VATLVKEPLVLTEADLD--- 61 (224)
T ss_dssp CEEEEETTTSHH--H-HHHHHHHHHTTCEEEEEESCHHHH------HHHTCTT-------SEEEECCGGGCCHHHHT---
T ss_pred CEEEEECCCCHH--H-HHHHHHHHHCCCEEEEEECCHHHH------HHCCCCC-------EEEEEEECCHHHHHHHC---
T ss_conf 969999989589--9-999999997879899998885772------0103762-------46555302113455403---
Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHH-HHCCCC
Q ss_conf 6454199971488853102333457778998898-718985
Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGS-LQGIRS 120 (250)
Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~-~~Gips 120 (250)
..|-|++-+..-..-...-...-.....++++ ..|++-
T Consensus 62 --~~d~vi~~~~~~~~~~~~~~~~~~~~~~i~a~~~~~~~~ 100 (224)
T 3h2s_A 62 --SVDAVVDALSVPWGSGRGYLHLDFATHLVSLLRNSDTLA 100 (224)
T ss_dssp --TCSEEEECCCCCTTSSCTHHHHHHHHHHHHTCTTCCCEE
T ss_pred --CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCE
T ss_conf --540799863034577420134444689999998739857
No 37
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Probab=56.13 E-value=7.5 Score=18.35 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=24.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 926882689868856999999998548919998
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC 33 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv 33 (250)
||||||=--|+=.. .|++.|.+.||+|+++
T Consensus 1 MKIlITGatGfIG~---~lv~~L~~~g~~V~~~ 30 (311)
T 2p5y_A 1 MRVLVTGGAGFIGS---HIVEDLLARGLEVAVL 30 (311)
T ss_dssp CEEEEETTTSHHHH---HHHHHHHTTTCEEEEE
T ss_pred CEEEEECCCCHHHH---HHHHHHHHCCCEEEEE
T ss_conf 96999888887999---9999999786989999
No 38
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=55.54 E-value=8.1 Score=18.13 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=24.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 9268826898688569999999985489199981
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICA 34 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvA 34 (250)
||||||=-.|+=. ..|.+.|.+.|++|++..
T Consensus 3 MkILItGatGfIG---~~l~~~L~~~g~~v~~~~ 33 (311)
T 3m2p_A 3 LKIAVTGGTGFLG---QYVVESIKNDGNTPIILT 33 (311)
T ss_dssp CEEEEETTTSHHH---HHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCCHHH---HHHHHHHHHCCCEEEEEE
T ss_conf 4499989997899---999999997869899996
No 39
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=54.97 E-value=11 Score=17.42 Aligned_cols=79 Identities=13% Similarity=0.161 Sum_probs=43.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCC
Q ss_conf 26882689868856999999998548919998179985650320224897058897110476327279999999875046
Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMSD 81 (250)
Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~~ 81 (250)
||||.-||=.-..|| ...|...|++|.. |.+.+ -|+..+..
T Consensus 6 ~ILIVDD~~~~r~~l---~~~L~~~g~~V~~-a~~~~-----------------------------------eal~~~~~ 46 (208)
T 1yio_A 6 TVFVVDDDMSVREGL---RNLLRSAGFEVET-FDCAS-----------------------------------TFLEHRRP 46 (208)
T ss_dssp EEEEECSCHHHHHHH---HHHHHTTTCEEEE-ESSHH-----------------------------------HHHHHCCT
T ss_pred EEEEEECCHHHHHHH---HHHHHHCCCEEEE-ECCHH-----------------------------------HHHHHHHC
T ss_conf 799994999999999---9999977998999-79999-----------------------------------99998604
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 45419997148885310233345777899889871898532220
Q gi|255764489|r 82 KKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250)
Q Consensus 82 ~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250)
.+||+||.-++...--|.+++ ..+-.....+|-|.+|.
T Consensus 47 ~~pDlvllD~~mp~~~G~~~l------~~i~~~~~~~~iI~lt~ 84 (208)
T 1yio_A 47 EQHGCLVLDMRMPGMSGIELQ------EQLTAISDGIPIVFITA 84 (208)
T ss_dssp TSCEEEEEESCCSSSCHHHHH------HHHHHTTCCCCEEEEES
T ss_pred CCCCEEEEECCCCCCCCHHHH------HHHHHHCCCCEEEEEEC
T ss_conf 699989985788997657999------99886056651798725
No 40
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Probab=54.02 E-value=8.9 Score=17.89 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=24.7
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 92688268986885699999999854891999817
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAP 35 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP 35 (250)
||||||=--|+=.. .|.+.|.+.||+|+...=
T Consensus 13 MKILVtGatGfIG~---~l~~~Ll~~g~~V~~~~r 44 (321)
T 2pk3_A 13 MRALITGVAGFVGK---YLANHLTEQNVEVFGTSR 44 (321)
T ss_dssp CEEEEETTTSHHHH---HHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCCHHHH---HHHHHHHHCCCEEEEEEC
T ss_conf 67999678888999---999999988498999808
No 41
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=53.29 E-value=9.2 Score=17.80 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=46.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCC
Q ss_conf 26882689868856999999998548919998179985650320224897058897110476327279999999875046
Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMSD 81 (250)
Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~~ 81 (250)
||||.-||=.-+. .|...|+..|++|..+ -+.+ -|+..+..
T Consensus 9 kILiVeDd~~~~~---~l~~~L~~~g~~V~~a-~~~~-----------------------------------ea~~~~~~ 49 (233)
T 1ys7_A 9 RVLVVDDDSDVLA---SLERGLRLSGFEVATA-VDGA-----------------------------------EALRSATE 49 (233)
T ss_dssp EEEEECSCHHHHH---HHHHHHHHTTCEEEEE-SSHH-----------------------------------HHHHHHHH
T ss_pred EEEEEECCHHHHH---HHHHHHHHCCCEEEEE-CCHH-----------------------------------HHHHHHHH
T ss_conf 7999979999999---9999999789999998-9999-----------------------------------99999974
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 45419997148885310233345777899889871898532220
Q gi|255764489|r 82 KKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250)
Q Consensus 82 ~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250)
.+|||||..++...--|.. .-..+-.....+|-|.+|.
T Consensus 50 ~~~dlvilD~~lp~~~g~~------~~~~~r~~~~~~~iiilt~ 87 (233)
T 1ys7_A 50 NRPDAIVLDINMPVLDGVS------VVTALRAMDNDVPVCVLSA 87 (233)
T ss_dssp SCCSEEEEESSCSSSCHHH------HHHHHHHTTCCCCEEEEEC
T ss_pred CCCCEEEEECCCCCCCCCC------EEEECCCCCCCCCEECCCC
T ss_conf 7997897522387556862------2310123577762331456
No 42
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*
Probab=52.69 E-value=9.7 Score=17.68 Aligned_cols=104 Identities=14% Similarity=0.085 Sum_probs=50.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEC--CCCCCCCEEEEE-CCCCCEEEEEEEEEEEEECCCHHHHHHHHHH
Q ss_conf 9268826898688569999999985489199981--799856503202-2489705889711047632727999999987
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICA--PEMDQSCLANSL-TMSRNIACRTISKKRFAVHGTPVDCVVIALQ 77 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvA--P~~~~S~~~~ai-t~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~ 77 (250)
||||||=--|+-.. .|++.|.+.|++|+++- ....++.....- .....++..+. |=+=.+. +.
T Consensus 1 MkILItGatGfiG~---~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------Di~d~~~----l~ 66 (338)
T 1udb_A 1 MRVLVTGGSGYIGS---HTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEG-------DIRNEAL----MT 66 (338)
T ss_dssp CEEEEETTTSHHHH---HHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEEC-------CTTCHHH----HH
T ss_pred CEEEEECCCCHHHH---HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEE-------ECCCHHH----HH
T ss_conf 96999898878999---9999999784989999788876355667788615788769980-------1789899----99
Q ss_pred HCC-CCCCCEEEECCCCCCCCC-----------HHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 504-645419997148885310-----------23334577789988987189853
Q gi|255764489|r 78 KMS-DKKPDLILSGVNVGTNTS-----------NHVAYSGTLAAAFEGSLQGIRSF 121 (250)
Q Consensus 78 ~l~-~~~pDlViSGiN~G~N~g-----------~~v~ySGTvgAA~ea~~~GipsI 121 (250)
.++ +.+||.|+- .++..+ ..+-.-||.-..-.+.-.+++-+
T Consensus 67 ~~~~~~~~d~Vih---lAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~ 119 (338)
T 1udb_A 67 EILHDHAIDTVIH---FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNF 119 (338)
T ss_dssp HHHHHTTCSEEEE---CCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHCCCCEEEE---CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 9997569989998---9876661656769899999999999999999998399989
No 43
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A*
Probab=52.14 E-value=10 Score=17.59 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=22.8
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 9268826898688569999999985489199981
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICA 34 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvA 34 (250)
||||||=--|+- | +.|.+.|.+.|++|+++.
T Consensus 1 MKILItGatGfi--G-~~l~~~L~~~g~~V~~~~ 31 (312)
T 3ko8_A 1 MRIVVTGGAGFI--G-SHLVDKLVELGYEVVVVD 31 (312)
T ss_dssp CEEEEETTTSHH--H-HHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECCCCHH--H-HHHHHHHHHCCCEEEEEE
T ss_conf 969998888689--9-999999997869899997
No 44
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=51.07 E-value=13 Score=16.98 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=26.8
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 926882689868856999999998548919998
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC 33 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv 33 (250)
|||.+- ||--.|+.+|++.|.+.|++|...
T Consensus 13 mkih~i---Gigg~Gms~lA~~l~~~G~~V~gs 42 (469)
T 1j6u_A 13 MKIHFV---GIGGIGMSAVALHEFSNGNDVYGS 42 (469)
T ss_dssp CEEEEE---TTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEE---EECHHHHHHHHHHHHHCCCEEEEE
T ss_conf 779999---886999999999999689969998
No 45
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, PSI-2, protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=49.51 E-value=12 Score=17.12 Aligned_cols=104 Identities=14% Similarity=0.159 Sum_probs=49.7
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250)
||||||---|.- |- .+++.|.+.||+|+.++-..++-. .+.-.....+. .+.-.+ .+...+
T Consensus 22 MkIlI~GasG~i--G~-~lv~~Ll~~g~~V~~l~R~~~k~~---~~~~~~~~~~~---------~~d~~~----~~~~a~ 82 (236)
T 3e8x_A 22 MRVLVVGANGKV--AR-YLLSELKNKGHEPVAMVRNEEQGP---ELRERGASDIV---------VANLEE----DFSHAF 82 (236)
T ss_dssp CEEEEETTTSHH--HH-HHHHHHHHTTCEEEEEESSGGGHH---HHHHTTCSEEE---------ECCTTS----CCGGGG
T ss_pred CEEEEECCCCHH--HH-HHHHHHHHCCCEEEEEECCHHHHH---HHHHCCCCCCC---------CCCHHH----HHHHHC
T ss_conf 908999998889--99-999999978598999988878813---55523553311---------343033----333312
Q ss_pred CCCCCEEEECCCCCCCCCHHHH----HHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 6454199971488853102333----4577789988987189853222
Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVA----YSGTLAAAFEGSLQGIRSFALS 124 (250)
Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~----ySGTvgAA~ea~~~GipsIAiS 124 (250)
+..|.||.-+..+...+.+-. +-|+.-....+.-.|++-+-+.
T Consensus 83 -~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~~li~aa~~~~v~~~v~~ 129 (236)
T 3e8x_A 83 -ASIDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMV 129 (236)
T ss_dssp -TTCSEEEECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEE
T ss_pred -CCCCHHHHCCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCEEEEE
T ss_conf -45453331103467778652134312341678888875596689999
No 46
>1s8n_A Putative antiterminator; structural genomics, transcriptional antiterminator, two component system, PSI; 1.48A {Mycobacterium tuberculosis H37RV} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=49.43 E-value=13 Score=16.83 Aligned_cols=79 Identities=19% Similarity=0.201 Sum_probs=43.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCC
Q ss_conf 26882689868856999999998548919998179985650320224897058897110476327279999999875046
Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMSD 81 (250)
Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~~ 81 (250)
||||.-||=+... .|.+.|+..|++|+-+|-+ .. -|+..+..
T Consensus 15 rILIVDDd~~~r~---~l~~~L~~~G~~vv~~a~~-------------------------------g~----eal~~~~~ 56 (205)
T 1s8n_A 15 RVLIAEDEALIRM---DLAEMLREEGYEIVGEAGD-------------------------------GQ----EAVELAEL 56 (205)
T ss_dssp EEEEECSSHHHHH---HHHHHHHHTTCEEEEEESS-------------------------------HH----HHHHHHHH
T ss_pred EEEEECCCHHHHH---HHHHHHHHCCCEEEEEECC-------------------------------HH----HHHHHHHH
T ss_conf 8999829899999---9999999869979999899-------------------------------99----99999983
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 45419997148885310233345777899889871898532220
Q gi|255764489|r 82 KKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250)
Q Consensus 82 ~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250)
.+|||||.-|+...--|.+++ ..-++ ...+|=|.+|-
T Consensus 57 ~~pDlillDi~MP~mdGle~~-----~~ir~--~~~~piiilTa 93 (205)
T 1s8n_A 57 HKPDLVIMDVKMPRRDGIDAA-----SEIAS--KRIAPIVVLTA 93 (205)
T ss_dssp HCCSEEEEESSCSSSCHHHHH-----HHHHH--TTCSCEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHH-----HHHHH--CCCCCEEEEEC
T ss_conf 799999996404586079999-----99985--69999899956
No 47
>3ccd_A Phosphocarrier protein HPR; succinimide, isoaspartate, protein damage, autophosphatase, transferase; 1.00A {Escherichia coli} PDB: 1cm3_A 1cm2_A 1ggr_B 1hdn_A 1j6t_B 1pfh_A* 1poh_A 1vrc_C 2jel_P 2xdf_C 3eza_B 3ezb_B 3eze_B 1opd_A
Probab=49.06 E-value=13 Score=16.93 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=50.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCC
Q ss_conf 26882689868856999999998548919998179985650320224897058897110476327279999999875046
Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMSD 81 (250)
Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~~ 81 (250)
.+-|+|..|+++---..|++.++.+..+|++.. .++..-+.|+-----|.+++-+.=...++|.=+.-+.-+|..++.
T Consensus 5 ~v~I~n~~GLHARPAa~lv~~a~~f~s~i~i~~--~~~~~~akSi~~lm~L~~~~G~~i~i~~~G~De~~A~~~l~~~~~ 82 (85)
T 3ccd_A 5 EVTITAPNGLDTRPAAQFVKEAKGFTSEITVTS--NGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMA 82 (85)
T ss_dssp EEECCSTTCSCHHHHHHHHHHHTTSCSEEEEEE--TTEEEETTCHHHHTTSCCCTTCEEEEEEESTTHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEE--CCEEEEHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 999938996747389999999986899799998--998986083999984288999999999968889999999999996
No 48
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=48.61 E-value=14 Score=16.75 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=32.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 268826898688569999999985489199981799856
Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQS 40 (250)
Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S 40 (250)
||++-=-||++..-+....+.|+..|++|.+++|+..+-
T Consensus 11 kVail~~~g~~~~E~~~~~~~l~~ag~~v~~vs~~~~~v 49 (190)
T 2vrn_A 11 KIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGEI 49 (190)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSSEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEE
T ss_conf 999992699589999999999997899999996479817
No 49
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization, X-RAY crystallography; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=47.46 E-value=12 Score=17.17 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=25.2
Q ss_pred CEEEEECCC-CCCCHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 926882689-86885699999999854891999817998
Q gi|255764489|r 1 MRILLTNDD-GIKSKGLITLENIARSISDDIWICAPEMD 38 (250)
Q Consensus 1 m~ILitNDD-G~~a~gl~~l~~~l~~~~~~v~vvAP~~~ 38 (250)
|||-|..|. |++-. ..|++.|++.|++|.=+-|..+
T Consensus 1 MkI~igsDhaG~~lK--~~l~~~L~~~g~~V~D~G~~~~ 37 (149)
T 3he8_A 1 MKIGIGSDHGGYNLK--REIADFLKKRGYEVIDFGTHGN 37 (149)
T ss_dssp CEEEEEECGGGHHHH--HHHHHHHHHTTCEEEECCCCSS
T ss_pred CEEEEEECCCHHHHH--HHHHHHHHHCCCEEEECCCCCC
T ss_conf 989999588569999--9999999988996897899866
No 50
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=46.61 E-value=12 Score=17.14 Aligned_cols=106 Identities=20% Similarity=0.255 Sum_probs=56.3
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250)
||||||---|.- | +.|.+.|.+.|++|+.+.-..++. .....+..... .++-+|.+ +...+
T Consensus 1 MkVlVtGatG~i--G-~~lv~~Ll~~g~~V~~~~R~~~~~------~~~~~~~~~~~-----d~~~~~~~-----l~~~~ 61 (219)
T 3dqp_A 1 MKIFIVGSTGRV--G-KSLLKSLSTTDYQIYAGARKVEQV------PQYNNVKAVHF-----DVDWTPEE-----MAKQL 61 (219)
T ss_dssp CEEEEESTTSHH--H-HHHHHHHTTSSCEEEEEESSGGGS------CCCTTEEEEEC-----CTTSCHHH-----HHTTT
T ss_pred CEEEEECCCCHH--H-HHHHHHHHHCCCEEEEEECCHHHH------HHHHCCCCCCC-----CCCCCHHH-----HHHHH
T ss_conf 939999999989--9-999999997839899998887882------44315520000-----01120122-----33430
Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC-CCC
Q ss_conf 6454199971488853102333457778998898718985322-200
Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFAL-SQA 126 (250)
Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAi-S~~ 126 (250)
+.+|.||+-.-.+..-..++-.-|+.-.+-.+.-.|++-+-+ |..
T Consensus 62 -~~~d~Vi~~~~~~~~~~~~~~~~~~~~~~~aa~~~~v~~~i~iSs~ 107 (219)
T 3dqp_A 62 -HGMDAIINVSGSGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTI 107 (219)
T ss_dssp -TTCSEEEECCCCTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred -CCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEE
T ss_conf -5860799861012332323212101689998774366609999751
No 51
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=45.42 E-value=15 Score=16.44 Aligned_cols=42 Identities=7% Similarity=0.128 Sum_probs=34.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEE
Q ss_conf 268826898688569999999985489199981799856503
Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLA 43 (250)
Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~ 43 (250)
||++-=-||++.--+....+.+++.|++|.+++|...++-.|
T Consensus 25 kVaill~dgf~~~E~~~p~~~l~~aG~~v~~vs~~~~~~v~~ 66 (193)
T 1oi4_A 25 KIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKG 66 (193)
T ss_dssp EEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEEC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCEEE
T ss_conf 799995797629999999999996899899996799974473
No 52
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae}
Probab=44.59 E-value=16 Score=16.37 Aligned_cols=30 Identities=3% Similarity=-0.087 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 868856999999998548919998179985
Q gi|255764489|r 10 GIKSKGLITLENIARSISDDIWICAPEMDQ 39 (250)
Q Consensus 10 G~~a~gl~~l~~~l~~~~~~v~vvAP~~~~ 39 (250)
|+...-+..-++++++.|++|.++.|...+
T Consensus 25 G~~~~E~~~P~~~l~~aG~~V~~aSp~Gg~ 54 (244)
T 3kkl_A 25 GVFVVEILRSFDTFEKHGFEVDFVSETGGF 54 (244)
T ss_dssp CBCHHHHHHHHHHHHTTTCEEEEEESSSCC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 245999999999999879979998079998
No 53
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=44.58 E-value=16 Score=16.36 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=48.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCC
Q ss_conf 26882689868856999999998548919998179985650320224897058897110476327279999999875046
Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMSD 81 (250)
Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~~ 81 (250)
+|||.-||=.. .+.|.+.|+..|++|.. |.+.+. |+..+..
T Consensus 5 ~ILIVDDd~~~---~~~l~~~L~~~g~~v~~-a~~~~~-----------------------------------a~~~l~~ 45 (124)
T 1dc7_A 5 IVWVVDDDSSI---RWVLERALAGAGLTCTT-FENGNE-----------------------------------VLAALAS 45 (124)
T ss_dssp CCEEECSSSSH---HHHHHHHHTTTTCCCEE-CCCTTH-----------------------------------HHHHSSS
T ss_pred EEEEEECCHHH---HHHHHHHHHHCCCEEEE-ECCHHH-----------------------------------HHHHHHH
T ss_conf 89999599999---99999999988999999-899999-----------------------------------9999983
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 45419997148885310233345777899889871898532220
Q gi|255764489|r 82 KKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250)
Q Consensus 82 ~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250)
.+||+||.-+|...=-|.+++ ..+......+|-|-+|.
T Consensus 46 ~~~dlii~D~~lp~~~G~el~------~~l~~~~~~~pii~~t~ 83 (124)
T 1dc7_A 46 KTPDVLLSDIRMPGMDGLALL------KQIKQRHPMLPVIIMTA 83 (124)
T ss_dssp CCCSCEEECSCSSHHHHCSTH------HHHHHHCTTSCCCCBCC
T ss_pred CCCCEEEECCCCCCCCHHHHH------HHHHHHCCCCEEEEEEC
T ss_conf 899999875889998459999------99998589991999989
No 54
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=44.57 E-value=15 Score=16.43 Aligned_cols=30 Identities=10% Similarity=0.165 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 926882689868856999999998548919998
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC 33 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv 33 (250)
||||||=--|+= | ..|++.|.+.|++|+++
T Consensus 30 MKILVTGatGfI--G-s~Lv~~L~~~g~~Vi~~ 59 (379)
T 2c5a_A 30 LKISITGAGGFI--A-SHIARRLKHEGHYVIAS 59 (379)
T ss_dssp CEEEEETTTSHH--H-HHHHHHHHHTTCEEEEE
T ss_pred CEEEEECCCCHH--H-HHHHHHHHHCCCEEEEE
T ss_conf 979998999889--9-99999999783989999
No 55
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, parkinson'S disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=44.48 E-value=16 Score=16.36 Aligned_cols=30 Identities=7% Similarity=0.023 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 868856999999998548919998179985
Q gi|255764489|r 10 GIKSKGLITLENIARSISDDIWICAPEMDQ 39 (250)
Q Consensus 10 G~~a~gl~~l~~~l~~~~~~v~vvAP~~~~ 39 (250)
|+...-+..-++.|++.|++|.++.|....
T Consensus 25 G~~~~E~~~P~~~l~~aG~~V~iaSp~gg~ 54 (224)
T 1u9c_A 25 GLWLEEFAVPYLVFQEKGYDVKVASIQGGE 54 (224)
T ss_dssp CBCHHHHHHHHHHHHHTTCEEEEEESSCBC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 302888999999999889979999448984
No 56
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=43.95 E-value=13 Score=16.99 Aligned_cols=81 Identities=15% Similarity=0.282 Sum_probs=45.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250)
|||||..||-.. .+.+.+.|++.|++++.+|- +| .+ |+..+.
T Consensus 6 lrILiVDD~~~~---~~~l~~~L~~~g~~~v~~a~-----------------------------~g--~e----al~~l~ 47 (129)
T 3h1g_A 6 MKLLVVDDSSTM---RRIIKNTLSRLGYEDVLEAE-----------------------------HG--VE----AWEKLD 47 (129)
T ss_dssp CCEEEECSCHHH---HHHHHHHHHHTTCCCEEEES-----------------------------SH--HH----HHHHHH
T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEEEEC-----------------------------CH--HH----HHHHHH
T ss_conf 899999288999---99999999986996999989-----------------------------99--99----999997
Q ss_pred -CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH--HHHHCCCCCCCCC
Q ss_conf -64541999714888531023334577789988--9871898532220
Q gi|255764489|r 81 -DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFE--GSLQGIRSFALSQ 125 (250)
Q Consensus 81 -~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~e--a~~~GipsIAiS~ 125 (250)
...||+||..++...--|.+++ ..+- .....+|-|.+|-
T Consensus 48 ~~~~~dliilD~~mP~~~G~el~------~~ir~~~~~~~~pii~lt~ 89 (129)
T 3h1g_A 48 ANADTKVLITDWNMPEMNGLDLV------KKVRSDSRFKEIPIIMITA 89 (129)
T ss_dssp HCTTCCEEEECSCCSSSCHHHHH------HHHHTSTTCTTCCEEEEES
T ss_pred HCCCCCEEEEECCCCCCCCHHHH------HHHHHCCCCCCCEEEEEEC
T ss_conf 37999899622158888879999------9998375679993999976
No 57
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*
Probab=43.19 E-value=17 Score=16.23 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=24.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 926882689868856999999998548919998179
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPE 36 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~ 36 (250)
||||||=-.|+-.. .|.+.|.+.|++|+++.-.
T Consensus 1 MKILVtGatGfiGs---~l~~~Ll~~g~~~vi~id~ 33 (361)
T 1kew_A 1 MKILITGGAGFIGS---AVVRHIIKNTQDTVVNIDK 33 (361)
T ss_dssp CEEEEESTTSHHHH---HHHHHHHHHCSCEEEEEEC
T ss_pred CEEEEECCCCHHHH---HHHHHHHHCCCCEEEEEEC
T ss_conf 96999888868999---9999999789968999847
No 58
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=42.79 E-value=15 Score=16.59 Aligned_cols=84 Identities=13% Similarity=0.213 Sum_probs=46.4
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250)
|||||.-||-.. ...|.+.|+..|++|.. |. ++.+ |+..+.
T Consensus 15 lrILiVDD~~~~---r~~l~~~L~~~g~~v~~-a~-------------------------------~~~~----al~~l~ 55 (143)
T 3m6m_D 15 MRMLVADDHEAN---RMVLQRLLEKAGHKVLC-VN-------------------------------GAEQ----VLDAMA 55 (143)
T ss_dssp CEEEEECSSHHH---HHHHHHHHHC--CEEEE-ES-------------------------------SHHH----HHHHHH
T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEE-EC-------------------------------CHHH----HHHHHH
T ss_conf 979999588999---99999999987999999-89-------------------------------9999----999975
Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 645419997148885310233345777899889871898532220
Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250)
Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250)
..+||+||..+|.-.--|.+++-- +-+--......+|-|.+|.
T Consensus 56 ~~~~dlii~D~~mp~~~G~el~~~--ir~~~~~~~~~~pii~lt~ 98 (143)
T 3m6m_D 56 EEDYDAVIVDLHMPGMNGLDMLKQ--LRVMQASGMRYTPVVVLSA 98 (143)
T ss_dssp HSCCSEEEEESCCSSSCHHHHHHH--HHHHHHTTCCCCCEEEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHH--HHHHCCCCCCCCEEEEEEC
T ss_conf 289999998388899988999999--9862843358993999978
No 59
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=41.69 E-value=18 Score=16.09 Aligned_cols=29 Identities=7% Similarity=0.377 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 92688268986885699999999854891999
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWI 32 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~v 32 (250)
|||||.-|+-. -...+.+.|+..|++|..
T Consensus 8 ~rILvVDD~~~---~~~~l~~~L~~~g~~v~~ 36 (136)
T 1dcf_A 8 LKVLVMDENGV---SRMVTKGLLVHLGCEVTT 36 (136)
T ss_dssp CEEEEECSCHH---HHHHHHHHHHHTTCEEEE
T ss_pred CEEEEEECCHH---HHHHHHHHHHHCCCEEEE
T ss_conf 99999939899---999999999987999999
No 60
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=41.65 E-value=18 Score=16.09 Aligned_cols=85 Identities=14% Similarity=0.245 Sum_probs=47.9
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250)
|||||.-||=.. ...+.+.|+..|++|.++ .+ | .-|+..+.
T Consensus 11 l~VLiVDD~~~~---r~~l~~~L~~~g~~v~~a-~~-----------------------------g------~eAl~~~~ 51 (140)
T 3c97_A 11 LSVLIAEDNDIC---RLVAAKALEKCTNDITVV-TN-----------------------------G------LQALQAYQ 51 (140)
T ss_dssp CEEEEECCCHHH---HHHHHHHHTTTCSEEEEE-SS-----------------------------H------HHHHHHHH
T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEEE-CC-----------------------------H------HHHHHHHH
T ss_conf 989999398999---999999999879999998-99-----------------------------9------99999987
Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHH-HHHHHHHCCCCCCCCCC
Q ss_conf 64541999714888531023334577789-98898718985322200
Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAA-AFEGSLQGIRSFALSQA 126 (250)
Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgA-A~ea~~~GipsIAiS~~ 126 (250)
..+||+||.-++.-.=-|.++.- .+-. .......-+|-|++|..
T Consensus 52 ~~~~dlii~D~~mP~~dG~el~~--~ir~~~~~~~~~~ipii~~ta~ 96 (140)
T 3c97_A 52 NRQFDVIIMDIQMPVMDGLEAVS--EIRNYERTHNTKRASIIAITAD 96 (140)
T ss_dssp HSCCSEEEECTTCCSSCHHHHHH--HHHHHHHHHTCCCCCCEEEESS
T ss_pred HCCCCEEEEECCCCCCCHHHHHH--HHHHCCCCCCCCCCEEEEEECC
T ss_conf 07998899947999989999999--9983521037899839999899
No 61
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=40.88 E-value=18 Score=16.01 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=16.9
Q ss_pred HHHHHHHHHHCCCCEEEECCC
Q ss_conf 999999998548919998179
Q gi|255764489|r 16 LITLENIARSISDDIWICAPE 36 (250)
Q Consensus 16 l~~l~~~l~~~~~~v~vvAP~ 36 (250)
+..|+++|.+.||+|+++.+.
T Consensus 25 ~~~la~~L~~rGH~Vt~~~~~ 45 (482)
T 2pq6_A 25 LFKLAKLLHLRGFHITFVNTE 45 (482)
T ss_dssp HHHHHHHHHHTTCEEEEEEEH
T ss_pred HHHHHHHHHHCCCEEEEEECC
T ss_conf 999999999789949999286
No 62
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=40.47 E-value=18 Score=15.97 Aligned_cols=107 Identities=13% Similarity=0.103 Sum_probs=54.2
Q ss_pred HHHHHHHHHH--H-CCC-CEEE--ECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHH-HCCCCCCCEE
Q ss_conf 6999999998--5-489-1999--817998565032022489705889711047632727999999987-5046454199
Q gi|255764489|r 15 GLITLENIAR--S-ISD-DIWI--CAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQ-KMSDKKPDLI 87 (250)
Q Consensus 15 gl~~l~~~l~--~-~~~-~v~v--vAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~-~l~~~~pDlV 87 (250)
-..+|..+++ + .+. +|++ +.|..-+...=.++..+-.-.+ .+.....+..|+=+-.+...|. .+....||||
T Consensus 39 D~~AlE~Al~lke~~~g~~V~v~s~G~~~~~~~lr~alamGad~a~-~i~~~~~~~~~~d~~~ta~~la~~~~~~~~DLI 117 (252)
T 1efp_B 39 DEIAVEEAIRLKEKGQAEEIIAVSIGVKQAAETLRTALAMGADRAI-LVVAADDVQQDIEPLAVAKILAAVARAEGTELI 117 (252)
T ss_dssp HHHHHHHHHHHHTTTSCSEEEEEEEESGGGHHHHHHHHHHTCSEEE-EEECCSSTTCCCCHHHHHHHHHHHHHHHTCSEE
T ss_pred CHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHCCCCCEE-EEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 6999999999754279809999996637879999988623798269-999245346677899999999999874199999
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 971488853102333457778998898718985322200135
Q gi|255764489|r 88 LSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAYTY 129 (250)
Q Consensus 88 iSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~~~ 129 (250)
+.|-..-. .++|-||+.. |.++|+|.+..-.....
T Consensus 118 l~G~~s~D------~~~g~vg~~l-Ae~Lg~P~vt~v~~ie~ 152 (252)
T 1efp_B 118 IAGKQAID------NDMNATGQML-AAILGWAQATFASKVEI 152 (252)
T ss_dssp EEESCCTT------TCCCCHHHHH-HHHHTCEEEEEEEEEEE
T ss_pred EEEEECCC------CCCCCCCHHH-HHHCCCCCEEEEEEEEE
T ss_conf 99832566------7888421688-97628981357899998
No 63
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=40.13 E-value=19 Score=15.94 Aligned_cols=100 Identities=17% Similarity=0.144 Sum_probs=47.9
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250)
||||||---|.- | +.|.+.|.+.||+|.++.=..++ +....+ +.+.+..|-+-.+.+.-++.
T Consensus 5 ~KIlItGatG~i--G-~~l~~~Ll~~g~~V~~l~R~~~~------~~~~~~------~~~~i~~D~~d~~~l~~~~~--- 66 (227)
T 3dhn_A 5 KKIVLIGASGFV--G-SALLNEALNRGFEVTAVVRHPEK------IKIENE------HLKVKKADVSSLDEVCEVCK--- 66 (227)
T ss_dssp CEEEEETCCHHH--H-HHHHHHHHTTTCEEEEECSCGGG------CCCCCT------TEEEECCCTTCHHHHHHHHT---
T ss_pred CEEEEECCCCHH--H-HHHHHHHHHCCCEEEEEECCHHH------CCCCCC------CEEEEECCCCCHHHHHHHHC---
T ss_conf 999998899889--9-99999999784989999868476------222466------23776135554666898860---
Q ss_pred CCCCCEEEECCCCCCCCC--HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 645419997148885310--2333457778998898718985
Q gi|255764489|r 81 DKKPDLILSGVNVGTNTS--NHVAYSGTLAAAFEGSLQGIRS 120 (250)
Q Consensus 81 ~~~pDlViSGiN~G~N~g--~~v~ySGTvgAA~ea~~~Gips 120 (250)
.+|-|++-+..+.+-- .+....|+.-........|++-
T Consensus 67 --~~d~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (227)
T 3dhn_A 67 --GADAVISAFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNR 106 (227)
T ss_dssp --TCSEEEECCCC------CCSHHHHHHHHHHHHHHHTTCSE
T ss_pred --CCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf --7751103414554505899887765489999999859978
No 64
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=39.75 E-value=19 Score=15.90 Aligned_cols=92 Identities=17% Similarity=0.235 Sum_probs=54.6
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEE--EEEEEECCCHHHHHHHHHHH
Q ss_conf 9268826898688569999999985489199981799856503202248970588971--10476327279999999875
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTIS--KKRFAVHGTPVDCVVIALQK 78 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~--~~~~~v~GtPaDcv~~~l~~ 78 (250)
|||+|. |+..-|- .+++.|.+.|++|.++-.+.++= ++.. .....+.|.+.|--.+---+
T Consensus 5 m~ViI~---G~G~~G~-~la~~L~~~g~~v~vId~d~~~~--------------~~~~~~~~~~vi~gd~~~~~~L~~a~ 66 (140)
T 1lss_A 5 MYIIIA---GIGRVGY-TLAKSLSEKGHDIVLIDIDKDIC--------------KKASAEIDALVINGDCTKIKTLEDAG 66 (140)
T ss_dssp CEEEEE---CCSHHHH-HHHHHHHHTTCEEEEEESCHHHH--------------HHHHHHCSSEEEESCTTSHHHHHHTT
T ss_pred CEEEEE---CCCHHHH-HHHHHHHHCCCCEEEEEECHHHH--------------HHHHHCCCCEEEECCCCHHHHHHHCC
T ss_conf 999999---9899999-99999997799589985015665--------------54453147459988761577787459
Q ss_pred CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 0464541999714888531023334577789988987189853
Q gi|255764489|r 79 MSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSF 121 (250)
Q Consensus 79 l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsI 121 (250)
+ ++.|.|+.-.+. - .-.+-+++-+..++.+-+
T Consensus 67 i--~~a~~vi~~t~~---d------~~Ni~~~~~ak~~~~~~i 98 (140)
T 1lss_A 67 I--EDADMYIAVTGK---E------EVNLMSSLLAKSYGINKT 98 (140)
T ss_dssp T--TTCSEEEECCSC---H------HHHHHHHHHHHHTTCCCE
T ss_pred C--CCCCEEEEEECC---H------HHHHHHHHHHHHCCCCCE
T ss_conf 1--303889995086---7------778999999998299948
No 65
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Probab=39.56 E-value=19 Score=15.89 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCCHHHHHHHH-HHHHCCCCEEEE
Q ss_conf 926882689868856999999-998548919998
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLEN-IARSISDDIWIC 33 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~-~l~~~~~~v~vv 33 (250)
||||||=--|+-.. .|++ .|++.||+|+++
T Consensus 3 MkILVTGa~GFIGs---~Lv~~LL~~~g~~V~~v 33 (397)
T 1gy8_A 3 MRVLVCGGAGYIGS---HFVRALLRDTNHSVVIV 33 (397)
T ss_dssp CEEEEETTTSHHHH---HHHHHHHHHCCCEEEEE
T ss_pred CEEEEECCCCHHHH---HHHHHHHHHCCCEEEEE
T ss_conf 87999688768999---99999998289979998
No 66
>1pch_A Phosphocarrier protein; phosphotransferase; 1.80A {Mycoplasma capricolum} SCOP: d.94.1.1
Probab=39.17 E-value=11 Score=17.24 Aligned_cols=77 Identities=18% Similarity=0.221 Sum_probs=46.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 2688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250)
Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250)
.+.|+|..|++|---..|++.++.+..+|++.. .++..-+.|+-----|.+++-+.=...++|.=++-+.-+|..++
T Consensus 4 ~~~I~n~~GLHARPAa~lv~~a~~f~s~V~i~~--~~~~~~akSil~lm~L~~~~G~~i~i~~~G~De~~Al~~l~~~l 80 (88)
T 1pch_A 4 SAIITDKVGLHARPASVLAKEASKFSSNITIIA--NEKQGNLKSIMNVMAMAIKTGTEITIQADGNDADQAIQAIKQTM 80 (88)
T ss_dssp EEECCCTTCSCHHHHHHHHHHHTTCSSEEEEEE--TTEEEETTCHHHHHHHCCCTTCEEEEEEESTTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEE--CCEEEECHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH
T ss_conf 999968998647389999999975898899998--99898028299998559999999999997879999999999999
No 67
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=39.07 E-value=19 Score=15.84 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=47.9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCC
Q ss_conf 26882689868856999999998548919998179985650320224897058897110476327279999999875046
Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMSD 81 (250)
Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~~ 81 (250)
||||..||-... ..+.+.|+..|++|..+. + +. -|+..+..
T Consensus 5 ~ILiVdDd~~~~---~~l~~~L~~~g~~v~~a~------------------------------~--~~----~al~~l~~ 45 (123)
T 1xhf_A 5 HILIVEDELVTR---NTLKSIFEAEGYDVFEAT------------------------------D--GA----EMHQILSE 45 (123)
T ss_dssp EEEEECSCHHHH---HHHHHHHHTTTCEEEEES------------------------------S--HH----HHHHHHHH
T ss_pred EEEEEECCHHHH---HHHHHHHHHCCCEEEEEC------------------------------C--HH----HHHHHHHC
T ss_conf 999996999999---999999998799999989------------------------------9--99----99999970
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 45419997148885310233345777899889871898532220
Q gi|255764489|r 82 KKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250)
Q Consensus 82 ~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250)
.+|||||..++.-.--|.+++ .++ -....+|-|.+|.
T Consensus 46 ~~~dlii~D~~lP~~~g~e~~------~~~-~~~~~~pii~lt~ 82 (123)
T 1xhf_A 46 YDINLVIMDINLPGKNGLLLA------REL-REQANVALMFLTG 82 (123)
T ss_dssp SCCSEEEECSSCSSSCHHHHH------HHH-HHHCCCEEEEEES
T ss_pred CCCCEEEEECCCCCCHHHHHH------HHH-HHCCCCCEEEEEE
T ss_conf 899999996899984499999------999-8569997899993
No 68
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=38.93 E-value=19 Score=15.83 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=49.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCC
Q ss_conf 26882689868856999999998548919998179985650320224897058897110476327279999999875046
Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMSD 81 (250)
Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~~ 81 (250)
||||.-||-.. .+.|.+.|+..|++|..++ ++.++..+ +..
T Consensus 3 rILiVDDd~~~---~~~l~~~L~~~g~~v~~a~--------------------------------~g~~al~~----l~~ 43 (120)
T 2a9o_A 3 KILIVDDEKPI---SDIIKFNMTKEGYEVVTAF--------------------------------NGREALEQ----FEA 43 (120)
T ss_dssp EEEEECSCHHH---HHHHHHHHHHTTCEEEEES--------------------------------SHHHHHHH----HHH
T ss_pred EEEEEECCHHH---HHHHHHHHHHCCCEEEEEC--------------------------------CHHHHHHH----HHH
T ss_conf 89999799999---9999999998899999989--------------------------------99999999----985
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 454199971488853102333457778998898718985322200
Q gi|255764489|r 82 KKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQA 126 (250)
Q Consensus 82 ~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~ 126 (250)
.+|||||.-+|...=-|.+++.. .-....+|-|.+|-.
T Consensus 44 ~~~dliilD~~mp~~dG~~~l~~-------~~~~~~~pvi~lt~~ 81 (120)
T 2a9o_A 44 EQPDIIILDLMLPEIDGLEVAKT-------IRKTSSVPILMLSAK 81 (120)
T ss_dssp HCCSEEEECSSCSSSCHHHHHHH-------HHHHCCCCEEEEESC
T ss_pred CCCCEEEECCCCCCCCHHHHHHH-------HHHCCCCCEEEEECC
T ss_conf 79989998299999899999999-------886599819999798
No 69
>3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis}
Probab=38.79 E-value=19 Score=15.81 Aligned_cols=29 Identities=14% Similarity=0.420 Sum_probs=18.9
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 926882689868856999999998548919998
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC 33 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv 33 (250)
-||||..||-.-..|| .+.|...+ ++.+|
T Consensus 2 irIlivdD~~~~r~~l---~~~L~~~~-~~~vv 30 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGL---VDLLGADP-ELDVV 30 (225)
T ss_dssp EEEEEECSCHHHHHHH---HHHHHTCT-TEEEE
T ss_pred CEEEEEECCHHHHHHH---HHHHHHCC-CEEEE
T ss_conf 8899996989999999---99998589-94899
No 70
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-2; 2.00A {Corynebacterium glutamicum}
Probab=38.01 E-value=20 Score=15.74 Aligned_cols=34 Identities=9% Similarity=0.204 Sum_probs=26.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 9268826898688569999999985489199981799
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEM 37 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~ 37 (250)
||||||=--|+-.. .|++.|.+.||+|+.+.=..
T Consensus 148 mkILITGatGfIG~---~Lv~~L~~~Gh~V~~l~R~~ 181 (516)
T 3oh8_A 148 LTVAITGSRGLVGR---ALTAQLQTGGHEVIQLVRKE 181 (516)
T ss_dssp CEEEEESTTSHHHH---HHHHHHHHTTCEEEEEESSS
T ss_pred CEEEEECCCCHHHH---HHHHHHHHCCCEEEEEECCC
T ss_conf 98999898758999---99999997879899997886
No 71
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=37.28 E-value=21 Score=15.67 Aligned_cols=79 Identities=18% Similarity=0.223 Sum_probs=48.0
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCC
Q ss_conf 26882689868856999999998548919998179985650320224897058897110476327279999999875046
Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMSD 81 (250)
Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~~ 81 (250)
||||.-||=.. ...+.+.|+..|++|..+. ++.++..+ +..
T Consensus 6 rILIVDDd~~~---~~~l~~~L~~~g~~v~~a~--------------------------------~~~eal~~----l~~ 46 (137)
T 3cfy_A 6 RVLLVEDSTSL---AILYKQYVKDEPYDIFHVE--------------------------------TGRDAIQF----IER 46 (137)
T ss_dssp EEEEECSCTTH---HHHHHHHTTTSSSEEEEES--------------------------------SHHHHHHH----HHH
T ss_pred EEEEEECCHHH---HHHHHHHHHHCCCEEEEEC--------------------------------CHHHHHHH----HHH
T ss_conf 69999799999---9999999998799999989--------------------------------99999999----984
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 45419997148885310233345777899889871898532220
Q gi|255764489|r 82 KKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250)
Q Consensus 82 ~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250)
.+|||||.-+|...--|.+++ ..+......+|=|.+|-
T Consensus 47 ~~pdlillD~~mp~~~G~~l~------~~ir~~~~~~piI~lt~ 84 (137)
T 3cfy_A 47 SKPQLIILDLKLPDMSGEDVL------DWINQNDIPTSVIIATA 84 (137)
T ss_dssp HCCSEEEECSBCSSSBHHHHH------HHHHHTTCCCEEEEEES
T ss_pred CCCCEEEEECCCCCCCHHHHH------HHHHHHCCCCCEEEEEC
T ss_conf 799999983899999889999------99997489984899987
No 72
>2b4a_A BH3024; 10175646, structural genomics, joint center for structural genomics, JCSG, protein structure initiative PSI, unknown function; 2.42A {Bacillus halodurans c-125} SCOP: c.23.1.1
Probab=37.22 E-value=21 Score=15.66 Aligned_cols=30 Identities=10% Similarity=0.243 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 926882689868856999999998548919998
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC 33 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv 33 (250)
|||||.-||-.. ...+.+.|+..|++|..+
T Consensus 16 ~rILvVDDd~~~---~~~l~~~L~~~G~~v~~~ 45 (138)
T 2b4a_A 16 FRVTLVEDEPSH---ATLIQYHLNQLGAEVTVH 45 (138)
T ss_dssp CEEEEECSCHHH---HHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEEE
T ss_conf 889999699999---999999999859979980
No 73
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=36.55 E-value=21 Score=15.60 Aligned_cols=53 Identities=8% Similarity=-0.001 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 2727999999987504645419997148885310233345777899889871898532220
Q gi|255764489|r 65 HGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250)
Q Consensus 65 ~GtPaDcv~~~l~~l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250)
-.+..+|+.+...+ ...+|||+..+|...--|.+++. .+-.....+|=|.+|-
T Consensus 67 a~~g~eAl~~~~~~--~p~~dlvilD~~mP~~dG~e~~~------~ir~~~~~~piI~lT~ 119 (157)
T 3hzh_A 67 AADGEEAVIKYKNH--YPNIDIVTLXITMPKMDGITCLS------NIMEFDKNARVIMISA 119 (157)
T ss_dssp ESSHHHHHHHHHHH--GGGCCEEEECSSCSSSCHHHHHH------HHHHHCTTCCEEEEES
T ss_pred ECCHHHHHHHHHHC--CCCCEEEEEECCCCCCCHHHHHH------HHHHHCCCCCEEEEEC
T ss_conf 89999999999841--98918999856899997899999------9997199997687632
No 74
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; 15025322, structural genomics, JCSG, protein structure initiative, PSI; HET: NAI UNL; 2.05A {Clostridium acetobutylicum atcc 824} SCOP: c.2.1.2
Probab=36.49 E-value=13 Score=16.88 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=23.5
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 9268826898688569999999985489199981
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICA 34 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvA 34 (250)
||||||=--|+=.. .|++.|.+.||+|+.+.
T Consensus 13 MKILItGatGfIG~---~lv~~L~~~g~~V~~~~ 43 (292)
T 1vl0_A 13 MKILITGANGQLGR---EIQKQLKGKNVEVIPTD 43 (292)
T ss_dssp EEEEEESTTSHHHH---HHHHHHTTSSEEEEEEC
T ss_pred CEEEEECCCCHHHH---HHHHHHHHCCCEEEEEE
T ss_conf 75899899988999---99999986879899932
No 75
>1ka5_A Phosphocarrier protein HPR; open faced beta-sandwich, structural proteomics in europe, spine, structural genomics, ligand transport; NMR {Staphylococcus aureus} SCOP: d.94.1.1 PDB: 1qr5_A 1txe_A
Probab=35.04 E-value=11 Score=17.36 Aligned_cols=76 Identities=12% Similarity=0.142 Sum_probs=46.0
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r 3 ILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250)
Q Consensus 3 ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250)
+.|+|..|++|---..|++.++.+..+|++.. .+++.-+.|+----.|.+.+-+.=...++|.=++-+.-+|..++
T Consensus 6 ~~I~n~~GLHARpAa~lv~~a~~f~s~V~i~~--~~~~~dakSil~lm~L~~~~G~~i~i~~~G~De~~Al~~l~~~l 81 (88)
T 1ka5_A 6 YVIIDETGIHARPATMLVQTASKFDSDIQLEY--NGKKVNLKSIMGVMSLGVGKDAEITIYADGSDESDAIQAISDVL 81 (88)
T ss_dssp EEBCCTTCSCHHHHHHHHHHHHHHSSEEEEEE--TTEEEETTCHHHHHTTTCCTTCEEEEEEESSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEE--CCEEEECHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH
T ss_conf 99958997747399999999975899899998--99999718299998659999999999997848999999999999
No 76
>1o1y_A Conserved hypothetical protein TM1158; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=34.94 E-value=22 Score=15.44 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=29.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 92688268986885699999999854891999817998
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMD 38 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~ 38 (250)
||||+---+-++.+|. +.+.|++.|.++.++-+...
T Consensus 13 ~rilviqh~~~e~~G~--~~~~l~~~g~~~~~~~~~~~ 48 (239)
T 1o1y_A 13 VRVLAIRHVEIEDLGM--MEDIFREKNWSFDYLDTPKG 48 (239)
T ss_dssp CEEEEECSSTTSSCTH--HHHHHHHTTCEEEEECGGGT
T ss_pred CEEEEEECCCCCCCHH--HHHHHHHCCCEEEEEECCCC
T ss_conf 0899997988889779--99999978996999988898
No 77
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes}
Probab=34.62 E-value=23 Score=15.41 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=41.8
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250)
|||||.-||-.. .+.|.+.|+..|++|..+ . ++.++.. .+.
T Consensus 8 mkVLiVDDd~~~---~~~l~~~L~~~g~~v~~a-~-------------------------------~g~eAl~----~~~ 48 (137)
T 3hdg_A 8 LKILIVEDDTDA---REWLSTIISNHFPEVWSA-G-------------------------------DGEEGER----LFG 48 (137)
T ss_dssp CCEEEECSCHHH---HHHHHHHHHTTCSCEEEE-S-------------------------------SHHHHHH----HHH
T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEEE-C-------------------------------CHHHHHH----HHH
T ss_conf 789999588999---999999999679999998-9-------------------------------9999999----987
Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 64541999714888531023334577789988987189853222
Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALS 124 (250)
Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS 124 (250)
..+||+||.-++.-.=-|.+++- .+-.....+|-|.+|
T Consensus 49 ~~~~DlvilD~~mP~~dG~el~~------~ir~~~~~~piI~lT 86 (137)
T 3hdg_A 49 LHAPDVIITDIRMPKLGGLEMLD------RIKAGGAKPYVIVIS 86 (137)
T ss_dssp HHCCSEEEECSSCSSSCHHHHHH------HHHHTTCCCEEEECC
T ss_pred HCCCCEEEEECCCCCCCHHHHHH------HHHHHCCCCCEEEEE
T ss_conf 47998999737899998999999------999509899589998
No 78
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=34.60 E-value=23 Score=15.40 Aligned_cols=95 Identities=12% Similarity=0.165 Sum_probs=44.6
Q ss_pred HHHHHHHHHHCCCCEEEECCCCC---CCCEEEEE---CCCCCEEEEEEEE--EEEEECCC---H--HHHHHHHHHHC--C
Q ss_conf 99999999854891999817998---56503202---2489705889711--04763272---7--99999998750--4
Q gi|255764489|r 16 LITLENIARSISDDIWICAPEMD---QSCLANSL---TMSRNIACRTISK--KRFAVHGT---P--VDCVVIALQKM--S 80 (250)
Q Consensus 16 l~~l~~~l~~~~~~v~vvAP~~~---~S~~~~ai---t~~~~~~~~~~~~--~~~~v~Gt---P--aDcv~~~l~~l--~ 80 (250)
++.|+++|.+.||+|+|+.+... .......+ .....+++.++.. ..| ++.. | -.-+.-.+..+ .
T Consensus 39 i~~La~~L~~~Gh~V~V~T~~~~~~~~~~~~~~~~~~~~~~~v~v~r~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~ 117 (499)
T 2r60_A 39 VKEVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYYQETNKVRIVRIPFGGDKF-LPKEELWPYLHEYVNKIINFYREE 117 (499)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCSEEECTTCSSEEEEEECCSCSSC-CCGGGCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999997799699995468888875446765326425976999846886455-668887899999999999999983
Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 645419997148885310233345777899889871898532
Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFA 122 (250)
Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIA 122 (250)
...||+|..- -.++| ...++-+...++|-+-
T Consensus 118 ~~~~dvv~~~----------~~~~~-~~~~~~~~~~~ip~v~ 148 (499)
T 2r60_A 118 GKFPQVVTTH----------YGDGG-LAGVLLKNIKGLPFTF 148 (499)
T ss_dssp TCCCSEEEEE----------HHHHH-HHHHHHHHHHCCCEEE
T ss_pred CCCCEEEEEC----------CCHHH-HHHHHHHHHCCCCEEE
T ss_conf 8998699978----------84377-9999999863997899
No 79
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=34.45 E-value=17 Score=16.13 Aligned_cols=12 Identities=17% Similarity=0.459 Sum_probs=8.4
Q ss_pred CCCCCCCEEEEC
Q ss_conf 046454199971
Q gi|255764489|r 79 MSDKKPDLILSG 90 (250)
Q Consensus 79 l~~~~pDlViSG 90 (250)
+...+||+||+-
T Consensus 65 ~~~~~~~~ii~d 76 (282)
T 3hbm_A 65 IKEEKFELLIID 76 (282)
T ss_dssp HHHHTCSEEEEE
T ss_pred HHCCCCCEEEEC
T ss_conf 762399999992
No 80
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=34.34 E-value=23 Score=15.38 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=41.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCC
Q ss_conf 26882689868856999999998548919998179985650320224897058897110476327279999999875046
Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMSD 81 (250)
Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~~ 81 (250)
||||.-||-.. .+.+.+.|+..|++|..+. +. .+ |+..+..
T Consensus 3 rILiVDDd~~~---~~~l~~~L~~~g~~v~~a~-~g-------------------------------~~----al~~~~~ 43 (116)
T 3a10_A 3 RILVVDDEPNI---RELLKEELQEEGYEIDTAE-NG-------------------------------EE----ALKKFFS 43 (116)
T ss_dssp EEEEECSCHHH---HHHHHHHHHHTTCEEEEES-SH-------------------------------HH----HHHHHHH
T ss_pred EEEEEECCHHH---HHHHHHHHHHCCCEEEEEC-CH-------------------------------HH----HHHHHHH
T ss_conf 89999299999---9999999998799999989-99-------------------------------99----9999984
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 45419997148885310233345777899889871898532220
Q gi|255764489|r 82 KKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250)
Q Consensus 82 ~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250)
.+||+||.-++.-.=-|.+++ ..+-.....+|=|.+|-
T Consensus 44 ~~~dlvilD~~mP~~~G~e~~------~~ir~~~~~~pii~lt~ 81 (116)
T 3a10_A 44 GNYDLVILDIEMPGISGLEVA------GEIRKKKKDAKIILLTA 81 (116)
T ss_dssp SCCSEEEECSCCSSSCHHHHH------HHHHHHCTTCCEEEEES
T ss_pred CCCCEEEEECCCCCCCHHHHH------HHHHHCCCCCCEEEEEC
T ss_conf 799989983688999999999------99984399897999989
No 81
>1ptf_A Histidine-containing phosphocarrier protein HPR; phosphotransferase; 1.60A {Enterococcus faecalis} SCOP: d.94.1.1 PDB: 1qfr_A 1fu0_A*
Probab=33.07 E-value=16 Score=16.28 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=46.2
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r 3 ILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250)
Q Consensus 3 ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250)
+-|+|..|++|---..|++.++.+..+|++..- .+..-+.|+----.|.+++-+.=...++|.=++-+.-+|..++
T Consensus 6 ~~I~n~~GLHARPAa~lv~~a~~f~s~i~i~~~--~~~~dakSil~lm~L~~~~G~~i~i~~~G~De~~A~~~l~~~l 81 (88)
T 1ptf_A 6 FHIVAETGIHARPATLLVQTASKFNSDINLEYK--GKSVNLKSIMGVMSLGVGQGSDVTITVDGADEAEGMAAIVETL 81 (88)
T ss_dssp EECCCTTCSCHHHHHHHHHHHTTCSSEEEEEET--TEEEETTCHHHHHHHCCCTTCEEEEEEESTTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEC--CEEEECHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH
T ss_conf 999479966471899999999758988999989--9888137399998459999999999997868999999999999
No 82
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=33.01 E-value=11 Score=17.24 Aligned_cols=80 Identities=13% Similarity=0.189 Sum_probs=42.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250)
|||||.-||-.. .+.+.+.|+..|+.++.+|.+.+ . |+..+.
T Consensus 7 lrILiVDD~~~~---~~~l~~~L~~~g~~~v~~a~~~~-------------------------------~----al~~~~ 48 (129)
T 1p6q_A 7 IKVLIVDDQVTS---RLLLGDALQQLGFKQITAAGDGE-------------------------------Q----GMKIMA 48 (129)
T ss_dssp CCEEEECSSHHH---HHHHHHHHHTTTCSCEECCSSHH-------------------------------H----HHHHHH
T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEEEECCHH-------------------------------H----HHHHHH
T ss_conf 889999598999---99999999987992999989999-------------------------------9----999997
Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHH--HHHHHCCCCCCCC
Q ss_conf 6454199971488853102333457778998--8987189853222
Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAF--EGSLQGIRSFALS 124 (250)
Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~--ea~~~GipsIAiS 124 (250)
..+||+||..+|.-.=-|.+++ ..+ .....++|=|.+|
T Consensus 49 ~~~~dlii~D~~mP~~dG~~l~------~~ir~~~~~~~~pii~ls 88 (129)
T 1p6q_A 49 QNPHHLVISDFNMPKMDGLGLL------QAVRANPATKKAAFIILT 88 (129)
T ss_dssp TSCCSEEEECSSSCSSCHHHHH------HHHTTCTTSTTCEEEECC
T ss_pred HCCCCEEEEECCCCCCCHHHHH------HHHHHCCCCCCCEEEEEE
T ss_conf 1899899984588999879999------999838566898299998
No 83
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=32.84 E-value=24 Score=15.23 Aligned_cols=29 Identities=10% Similarity=0.040 Sum_probs=19.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 26882689868856999999998548919998
Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWIC 33 (250)
Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv 33 (250)
||||.-||=.. ...|.+.|+..|++|..+
T Consensus 5 ~ILiVDDd~~~---~~~l~~~L~~~g~~v~~a 33 (155)
T 1qkk_A 5 SVFLIDDDRDL---RKAMQQTLELAGFTVSSF 33 (155)
T ss_dssp EEEEECSCHHH---HHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCHHH---HHHHHHHHHHCCCEEEEE
T ss_conf 89999599999---999999999879989997
No 84
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix-turn-helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1
Probab=32.75 E-value=24 Score=15.22 Aligned_cols=81 Identities=7% Similarity=0.048 Sum_probs=45.1
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250)
|||||.-||=.-+ ..|...|+..|++|.. |.+. .-|+..+.
T Consensus 3 ~rILiVeDd~~~~---~~l~~~L~~~g~~V~~-a~~~-----------------------------------~ea~~~~~ 43 (225)
T 1kgs_A 3 VRVLVVEDERDLA---DLITEALKKEMFTVDV-CYDG-----------------------------------EEGMYMAL 43 (225)
T ss_dssp CEEEEECSSHHHH---HHHHHHHHHTTCEEEE-ESSH-----------------------------------HHHHHHHH
T ss_pred CEEEEEECCHHHH---HHHHHHHHHCCCEEEE-ECCH-----------------------------------HHHHHHHH
T ss_conf 6199992999999---9999999987999999-8999-----------------------------------99999997
Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 6454199971488853102333457778998898718985322200
Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQA 126 (250)
Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~ 126 (250)
..+|||||..++...--|.... ..+-.....+|-|.+|..
T Consensus 44 ~~~~dliilD~~lp~~~g~~~~------~~ir~~~~~~pii~ls~~ 83 (225)
T 1kgs_A 44 NEPFDVVILDIMLPVHDGWEIL------KSMRESGVNTPVLMLTAL 83 (225)
T ss_dssp HSCCSEEEEESCCSSSCHHHHH------HHHHHTTCCCCEEEEESS
T ss_pred HCCCCEEEEECCCCCCCCCCHH------HHHHCCCCCCCEEECCCC
T ss_conf 2899899994677654310101------221113456753202334
No 85
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis}
Probab=32.64 E-value=24 Score=15.21 Aligned_cols=29 Identities=7% Similarity=-0.057 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 86885699999999854891999817998
Q gi|255764489|r 10 GIKSKGLITLENIARSISDDIWICAPEMD 38 (250)
Q Consensus 10 G~~a~gl~~l~~~l~~~~~~v~vvAP~~~ 38 (250)
|+..+-+..-+++|++.|++|.|+.|...
T Consensus 31 G~~l~E~~~P~~~l~~aG~eV~iASp~G~ 59 (247)
T 3n7t_A 31 GLFFSEALHPFNELTAAGFEVDVASETGT 59 (247)
T ss_dssp CBCHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 45799999999999977996999768998
No 86
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, PSI-2, protein structure initiative; 2.00A {Desulfuromonas acetoxidans dsm 684}
Probab=32.64 E-value=24 Score=15.21 Aligned_cols=80 Identities=20% Similarity=0.250 Sum_probs=47.9
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250)
|||||.-||=.. ...|.+.|+..|++|..+. + +.. |+..+.
T Consensus 9 ~rILiVDD~~~~---~~~l~~~L~~~G~~v~~a~-~-------------------------------g~e----Al~~~~ 49 (147)
T 2zay_A 9 WRIMLVDTQLPA---LAASISALSQEGFDIIQCG-N-------------------------------AIE----AVPVAV 49 (147)
T ss_dssp EEEEEECTTGGG---GHHHHHHHHHHTEEEEEES-S-------------------------------HHH----HHHHHH
T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEEEC-C-------------------------------HHH----HHHHHH
T ss_conf 889999799999---9999999998799999989-9-------------------------------999----999998
Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH--HHHHCCCCCCCCC
Q ss_conf 64541999714888531023334577789988--9871898532220
Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAFE--GSLQGIRSFALSQ 125 (250)
Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~e--a~~~GipsIAiS~ 125 (250)
..+|||||.-++.-.--|.+++ ..+- .....+|-|.+|-
T Consensus 50 ~~~pdliilD~~mP~~dG~el~------~~ir~~~~~~~iPiI~lS~ 90 (147)
T 2zay_A 50 KTHPHLIITEANMPKISGMDLF------NSLKKNPQTASIPVIALSG 90 (147)
T ss_dssp HHCCSEEEEESCCSSSCHHHHH------HHHHTSTTTTTSCEEEEES
T ss_pred HCCCCEEEECCCCCCCCCHHHH------HHHHHCCCCCCCCEEEEEC
T ss_conf 3799999985999999751899------9998485568971899726
No 87
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=32.63 E-value=16 Score=16.31 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=18.5
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 9268826898688569999999985489199981
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICA 34 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvA 34 (250)
|||||.-||=+-..|| ++.|...+ ++.+|+
T Consensus 6 ~rILIvdD~~~~~~~l---~~~L~~~~-~~~~v~ 35 (215)
T 1a04_A 6 ATILLIDDHPMLRTGV---KQLISMAP-DITVVG 35 (215)
T ss_dssp EEEEEECSCHHHHHHH---HHHHTTCT-TEEEEE
T ss_pred CEEEEEECCHHHHHHH---HHHHHHCC-CCEEEE
T ss_conf 7899992989999999---99998589-928999
No 88
>1zgz_A Torcad operon transcriptional regulatory protein TORR; two-component system, gene regulation, transcription factor, TMAO respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=32.39 E-value=25 Score=15.18 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 926882689868856999999998548919998
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC 33 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv 33 (250)
+||||.-||-.. ...|.+.|+..|++|.++
T Consensus 3 ~~ILvVDD~~~~---~~~l~~~L~~~g~~v~~a 32 (122)
T 1zgz_A 3 HHIVIVEDEPVT---QARLQSYFTQEGYTVSVT 32 (122)
T ss_dssp CEEEEECSSHHH---HHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEEE
T ss_conf 729999499999---999999999879999998
No 89
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent enzyme, lyase, cytoplasm, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=31.69 E-value=25 Score=15.11 Aligned_cols=27 Identities=11% Similarity=0.059 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCC
Q ss_conf 5699999999854891999817998565
Q gi|255764489|r 14 KGLITLENIARSISDDIWICAPEMDQSC 41 (250)
Q Consensus 14 ~gl~~l~~~l~~~~~~v~vvAP~~~~S~ 41 (250)
-+.+++..++..-| |++++....-+|-
T Consensus 232 ~~n~avi~a~~~~G-D~VlvdRn~HkSv 258 (755)
T 2vyc_A 232 GSNRTIMQACMTDN-DVVVVDRNCHKSI 258 (755)
T ss_dssp HHHHHHHHHHCCTT-CEEEEESSCCHHH
T ss_pred HHHHHHHHHCCCCC-CEEEECCCHHHHH
T ss_conf 99999999758998-9899768549999
No 90
>3ihs_A Phosphocarrier protein HPR; dimerization domain SWAP beta strand, IDP01131, structural genomics; HET: MSE; 1.15A {Bacillus anthracis} PDB: 1zvv_W* 1mo1_A 1mu4_A 2rlz_A 2ak7_A* 1k1c_A
Probab=31.59 E-value=19 Score=15.84 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=42.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHC
Q ss_conf 268826898688569999999985489199981799856503202248970588971104763272799999998750
Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKM 79 (250)
Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l 79 (250)
++-|+|..|+++---..|++.++++..+|++..- ++..-+.|+----.|.+.+-+.=...++|.=++-+.-+|-.+
T Consensus 29 ~v~V~~~~GLHARPAa~lv~~a~~f~s~V~i~~~--~~~~daKSil~lm~Lg~~~G~~i~i~a~G~De~~Al~~l~~l 104 (106)
T 3ihs_A 29 RVQVSLKNGLQARPAALFVQEANRFHADIFIEKD--GKTVNAKSIMGIMSLAIGTGSMITITTEGSDAEEALEALAAY 104 (106)
T ss_dssp EEECCCTTCSCHHHHHHHHHHHHTSSSEEEEEET--TEEEETTCHHHHHHTCCCTTCEEEEEEESTTHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEC--CEEEECHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHH
T ss_conf 9998689976373999999999748987999989--999963809999843889999999999787899999999998
No 91
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=30.52 E-value=27 Score=14.99 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=32.9
Q ss_pred CCCCCCEEECCCCCCCCHHCCCCEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCHHHHHCCCEEEE--C
Q ss_conf 78667354314567881015883891376654355427840688651699723677778988550789968988990--2
Q gi|255764489|r 153 QIPNTTLCNINFPRCSPEEVQKTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVT--P 230 (250)
Q Consensus 153 ~~p~~~vlNINiP~~~~~~ikg~k~t~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~e~TD~~Al~~GyISVT--P 230 (250)
.-|+-.++.++.|... |+.+++.=|... .......++ +. ...+.-..+++.|.-..- |
T Consensus 172 ~~~dlil~D~~mP~md-----G~e~~~~ir~~~----------~~~pii~lt-a~----~~~~~~~~~~~~G~~~~l~KP 231 (254)
T 2ayx_A 172 NHIDIVLSDVNMPNMD-----GYRLTQRIRQLG----------LTLPVIGVT-AN----ALAEEKQRCLESGMDSCLSKP 231 (254)
T ss_dssp SCCSEEEEEESSCSSC-----CHHHHHHHHHHH----------CCSCEEEEE-SS----TTSHHHHHHHHCCCEEEEESS
T ss_pred CCCCEEEEECCCCCCC-----HHHHHHHHHHHC----------CCCCEEEEE-CC----CCHHHHHHHHHCCCCEEEECC
T ss_conf 7998999950368998-----389999999629----------999799998-99----999999999986998999798
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 153564889999999874
Q gi|255764489|r 231 ITTDLTDYNSQQYISLSL 248 (250)
Q Consensus 231 L~~DlT~~~~l~~L~~~l 248 (250)
++.+ +..+.|++++
T Consensus 232 ~~~~----~L~~~l~~~l 245 (254)
T 2ayx_A 232 VTLD----VIKQTLTLYA 245 (254)
T ss_dssp CCHH----HHHHHHHHHH
T ss_pred CCHH----HHHHHHHHHH
T ss_conf 9999----9999999999
No 92
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*
Probab=30.49 E-value=24 Score=15.31 Aligned_cols=33 Identities=12% Similarity=0.233 Sum_probs=24.0
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 926882689868856999999998548919998179
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPE 36 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~ 36 (250)
||||||=--|+=.. .|.+.|.+.|++|.|++-+
T Consensus 5 k~ILITG~tGfiG~---~l~~~Ll~~g~~v~v~~~d 37 (348)
T 1oc2_A 5 KNIIVTGGAGFIGS---NFVHYVYNNHPDVHVTVLD 37 (348)
T ss_dssp SEEEEETTTSHHHH---HHHHHHHHHCTTCEEEEEE
T ss_pred CEEEEECCCCHHHH---HHHHHHHHCCCCEEEEEEE
T ss_conf 88999478868999---9999999779973999983
No 93
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=30.44 E-value=27 Score=14.98 Aligned_cols=37 Identities=14% Similarity=0.019 Sum_probs=27.2
Q ss_pred EEEECCC----------CCCCHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 6882689----------868856999999998548919998179985
Q gi|255764489|r 3 ILLTNDD----------GIKSKGLITLENIARSISDDIWICAPEMDQ 39 (250)
Q Consensus 3 ILitNDD----------G~~a~gl~~l~~~l~~~~~~v~vvAP~~~~ 39 (250)
|++||=+ |+..+-+..=++++++.|++|.++.|....
T Consensus 8 iv~ts~~~~~~~~g~~TG~~~~E~~~P~~~l~~aG~~V~~aSp~G~~ 54 (243)
T 1rw7_A 8 LALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETGKF 54 (243)
T ss_dssp EECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 99778754468888726255999999999999779859998289987
No 94
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 1cye_A 2che_A 2chf_A 2pl9_A* 2pmc_A ...
Probab=29.68 E-value=27 Score=14.90 Aligned_cols=81 Identities=14% Similarity=0.185 Sum_probs=44.9
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250)
|||||.-||-.. .+.+.+.|+..|.+.+.+|.+. .+ |+..+.
T Consensus 5 lrILiVDD~~~~---r~~l~~~L~~~g~~~v~~a~~g-------------------------------~~----a~~~~~ 46 (128)
T 1jbe_A 5 LKFLVVDDFSTM---RRIVRNLLKELGFNNVEEAEDG-------------------------------VD----ALNKLQ 46 (128)
T ss_dssp CCEEEECSCHHH---HHHHHHHHHHTTCCCEEEESSH-------------------------------HH----HHHHHT
T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCCEEEEECCH-------------------------------HH----HHHHHH
T ss_conf 999999698999---9999999998799689998999-------------------------------99----999976
Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHHHHHH--HHHHHCCCCCCCCC
Q ss_conf 6454199971488853102333457778998--89871898532220
Q gi|255764489|r 81 DKKPDLILSGVNVGTNTSNHVAYSGTLAAAF--EGSLQGIRSFALSQ 125 (250)
Q Consensus 81 ~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~--ea~~~GipsIAiS~ 125 (250)
..+||+||..++.-.=-|.+++ ..+ ......+|-|.+|-
T Consensus 47 ~~~~dliilD~~mP~~dG~el~------~~ir~~~~~~~~piI~lt~ 87 (128)
T 1jbe_A 47 AGGYGFVISDWNMPNMDGLELL------KTIRAXXAMSALPVLMVTA 87 (128)
T ss_dssp TCCCCEEEEESCCSSSCHHHHH------HHHHC--CCTTCCEEEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHH------HHHHHHCCCCCCCEEEEEC
T ss_conf 2899999996999999989999------9999756779993899989
No 95
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=29.54 E-value=28 Score=14.89 Aligned_cols=32 Identities=9% Similarity=0.202 Sum_probs=23.9
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 92688268986885699999999854891999817
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAP 35 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP 35 (250)
||||||-=-|+-.. .|++.|.+.||+|.++.-
T Consensus 14 mkilVtGatG~vG~---~l~~~L~~~g~~V~~l~R 45 (342)
T 2x4g_A 14 VKYAVLGATGLLGH---HAARAIRAAGHDLVLIHR 45 (342)
T ss_dssp CEEEEESTTSHHHH---HHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCCHHHH---HHHHHHHHCCCEEEEEEC
T ss_conf 94999899988999---999999978698999978
No 96
>1yzf_A Lipase/acylhydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Enterococcus faecalis V583} SCOP: c.23.10.5
Probab=28.68 E-value=29 Score=14.79 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=21.6
Q ss_pred EEECCCHHHHHHHHHHH-CCCCCCCEEEECCCCCCCC
Q ss_conf 76327279999999875-0464541999714888531
Q gi|255764489|r 62 FAVHGTPVDCVVIALQK-MSDKKPDLILSGVNVGTNT 97 (250)
Q Consensus 62 ~~v~GtPaDcv~~~l~~-l~~~~pDlViSGiN~G~N~ 97 (250)
.+++|..+..+.--+.. +...+||+|| |+.|.|=
T Consensus 45 ~g~~G~~~~~~~~~~~~~~~~~~pd~vi--i~~G~ND 79 (195)
T 1yzf_A 45 AGMPGDTTEDGLKRLNKEVLIEKPDEVV--IFFGAND 79 (195)
T ss_dssp EECTTCCHHHHHHHHHHHTGGGCCSEEE--EECCTTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEE--EECCCCC
T ss_conf 2889986899999999999874998899--9816753
No 97
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI- like and ferritin-like domains; YP_324989.1, structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=27.78 E-value=30 Score=14.70 Aligned_cols=43 Identities=7% Similarity=0.163 Sum_probs=34.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEE
Q ss_conf 2688268986885699999999854891999817998565032
Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLAN 44 (250)
Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ 44 (250)
||++-=-||++---+...+++++..|++|.+++|...+.-.+.
T Consensus 12 KVaILl~dGfe~~E~~~P~evL~~AG~eV~ivs~~~g~~v~~s 54 (365)
T 3fse_A 12 KVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGK 54 (365)
T ss_dssp EEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSSCCEECT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEC
T ss_conf 8999908987299999999999988998999977999825626
No 98
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=27.75 E-value=30 Score=14.69 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=27.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 9268826898688569999999985489199981799856
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQS 40 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S 40 (250)
|||-|.--=| +-| ++|++.|.+.||+|.+.+-+.++.
T Consensus 1 MkI~iigGaG--~iG-~alA~~la~~G~~V~l~~R~~e~~ 37 (212)
T 1jay_A 1 MRVALLGGTG--NLG-KGLALRLATLGHEIVVGSRREEKA 37 (212)
T ss_dssp CEEEEETTTS--HHH-HHHHHHHHTTTCEEEEEESSHHHH
T ss_pred CEEEEEECCH--HHH-HHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 9799994845--999-999999998899899996999999
No 99
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=27.40 E-value=30 Score=14.68 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=36.1
Q ss_pred HHHHHHHHHCCCCEEEEC--CCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC---CCCCCEEEEC
Q ss_conf 999999985489199981--7998565032022489705889711047632727999999987504---6454199971
Q gi|255764489|r 17 ITLENIARSISDDIWICA--PEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS---DKKPDLILSG 90 (250)
Q Consensus 17 ~~l~~~l~~~~~~v~vvA--P~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~---~~~pDlViSG 90 (250)
..|.+.|++.|.+|.+++ |.+-|.-.-.++- +.+..+|+..|--.+--.--+...+ ..+||+++-.
T Consensus 68 a~L~~tL~a~GAeV~~~~~Np~STQDdvaAaL~--------~~gi~VfA~~ge~~eey~~~l~~~L~~~~~~P~iiiDD 138 (435)
T 3gvp_A 68 AVLMETLGALGAQCRWAACNIYSTLNEVAAALA--------ESGFPVFAWKGESEDDFWWCIDRCVNVEGWQPNMILDD 138 (435)
T ss_dssp HHHHHHHHHTTCEEEEEESSSSCCCHHHHHHHH--------HHTCCEECCTTCCHHHHHHHHHHHHCBTTBCCSEEEES
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHH--------HCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 999999997698799943797666579999998--------76967998679987899999987641588885189834
No 100
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=27.32 E-value=30 Score=14.65 Aligned_cols=80 Identities=25% Similarity=0.368 Sum_probs=47.3
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 92688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250)
+||||.-||=.. ...|.+.|+..|++|..++ | | .. |+..+.
T Consensus 6 ~rILiVDD~~~~---~~~l~~~L~~~g~~v~~a~-----~-------------------------g--~e----Al~~l~ 46 (140)
T 3h5i_A 6 KKILIVEDSKFQ---AKTIANILNKYGYTVEIAL-----T-------------------------G--EA----AVEKVS 46 (140)
T ss_dssp CEEEEECSCHHH---HHHHHHHHHHTTCEEEEES-----S-------------------------H--HH----HHHHHH
T ss_pred CEEEEEECCHHH---HHHHHHHHHHCCCEEEEEC-----C-------------------------H--HH----HHHHHH
T ss_conf 999999598999---9999999998799999989-----8-------------------------9--99----999998
Q ss_pred -CCCCCEEEECCCCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf -6454199971488853-102333457778998898718985322200
Q gi|255764489|r 81 -DKKPDLILSGVNVGTN-TSNHVAYSGTLAAAFEGSLQGIRSFALSQA 126 (250)
Q Consensus 81 -~~~pDlViSGiN~G~N-~g~~v~ySGTvgAA~ea~~~GipsIAiS~~ 126 (250)
...||+||.-+|.-.- -|.+++ .++. ....+|-|.+|-.
T Consensus 47 ~~~~~dlillD~~mp~g~dG~e~~------~~ir-~~~~~PvI~lT~~ 87 (140)
T 3h5i_A 47 GGWYPDLILMDIELGEGMDGVQTA------LAIQ-QISELPVVFLTAH 87 (140)
T ss_dssp TTCCCSEEEEESSCSSSCCHHHHH------HHHH-HHCCCCEEEEESS
T ss_pred HCCCCCEEEEECCCCCCCCHHHHH------HHHH-HCCCCCEEEEECC
T ss_conf 469998999726653357899999------9998-5699989999899
No 101
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*
Probab=26.51 E-value=22 Score=15.53 Aligned_cols=94 Identities=17% Similarity=0.216 Sum_probs=46.5
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECC-CHHHHHHHHHHH-
Q ss_conf 926882689868856999999998548919998179985650320224897058897110476327-279999999875-
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHG-TPVDCVVIALQK- 78 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~G-tPaDcv~~~l~~- 78 (250)
||||||=--|+= | +.|.+.|.+.|+ ++++ ....+. +..|= -+. .+..
T Consensus 1 MKILItG~tGfI--G-~~l~~~L~~~g~-~v~~-~~~~~~---------------------~~~Dl~d~~-----~~~~~ 49 (299)
T 1n2s_A 1 MNILLFGKTGQV--G-WELQRSLAPVGN-LIAL-DVHSKE---------------------FCGDFSNPK-----GVAET 49 (299)
T ss_dssp CEEEEECTTSHH--H-HHHHHHTTTTSE-EEEE-CTTCSS---------------------SCCCTTCHH-----HHHHH
T ss_pred CEEEEECCCCHH--H-HHHHHHHHHCCC-EEEE-ECCCCC---------------------CCCCCCCHH-----HHHHH
T ss_conf 969998999889--9-999999986899-9999-789854---------------------317688999-----99999
Q ss_pred CCCCCCCEEEE--CCCCCC--CCC----HHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 04645419997--148885--310----233345777899889871898532220
Q gi|255764489|r 79 MSDKKPDLILS--GVNVGT--NTS----NHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250)
Q Consensus 79 l~~~~pDlViS--GiN~G~--N~g----~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250)
+.+.+||.||- |+.... ..- ..+..-+|......+.-.++.-+-+|-
T Consensus 50 l~~~kpD~Vih~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ss 104 (299)
T 1n2s_A 50 VRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYST 104 (299)
T ss_dssp HHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEEEEE
T ss_pred HHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCCC
T ss_conf 9975998999754224331001574133333211000000000001311122333
No 102
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=26.39 E-value=22 Score=15.45 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=27.8
Q ss_pred EEEEECC---CCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEE
Q ss_conf 2688268---9868856999999998548919998179985650320
Q gi|255764489|r 2 RILLTND---DGIKSKGLITLENIARSISDDIWICAPEMDQSCLANS 45 (250)
Q Consensus 2 ~ILitND---DG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~a 45 (250)
+|+|-=| ||+.|.-| |++.|+.+|.+|...-|++..=|.|-+
T Consensus 74 kI~I~GDYDvDGiTStaI--L~~~L~~lg~~v~~yIP~R~~eGYGl~ 118 (666)
T 2zxr_A 74 RIRVHGDYDADGLTGTAI--LVRGLAALGADVHPFIPHRLEEGYGVL 118 (666)
T ss_dssp EEEEECCSSHHHHHHHHH--HHHHHHHTTCEEEECCC----------
T ss_pred EEEEEEECCCCHHHHHHH--HHHHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf 899997468416899999--999999889965998889765688869
No 103
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=25.68 E-value=30 Score=14.64 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=23.2
Q ss_pred EEECCCC-CCCHHHHHHHHH---HHHCCCCEEEEC
Q ss_conf 8826898-688569999999---985489199981
Q gi|255764489|r 4 LLTNDDG-IKSKGLITLENI---ARSISDDIWICA 34 (250)
Q Consensus 4 LitNDDG-~~a~gl~~l~~~---l~~~~~~v~vvA 34 (250)
+||+.|| ++-.-|..|++. |++.|++|.+|.
T Consensus 15 ~lt~~~~~l~~~~i~~l~~~i~~L~~~g~evilVs 49 (367)
T 2j5v_A 15 VLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVT 49 (367)
T ss_dssp HHTTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 36894998589999999999999997899899987
No 104
>1y51_A Phosphocarrier protein HPR; bacillus stearothermophilus HPR F29W mutant, transport protein; 1.65A {Geobacillus stearothermophilus} PDB: 1y50_A 1y4y_A 2nzu_L* 1rzr_T* 2nzv_L* 2oen_L* 2fep_S*
Probab=25.63 E-value=32 Score=14.46 Aligned_cols=75 Identities=13% Similarity=0.143 Sum_probs=44.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 26882689868856999999998548919998179985650320224897058897110476327279999999875
Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQK 78 (250)
Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~ 78 (250)
.+-|+|..|+++---..|++.++++..+|++.. ..+..-+.|+----.|.+++-..=...++|.=+.-+.-+|..
T Consensus 5 ~~~I~n~~GLHARPAa~lv~~a~~f~s~I~i~~--~~~~~dakSi~~lm~L~~~~G~~i~v~~~G~De~~a~~~l~~ 79 (88)
T 1y51_A 5 TFKVVSDSGIHARPATILVQTASKWNSEIQLEY--NGKTVNLKSIMGVMSLGIPKGATIKITAEGADAAEAMAALTD 79 (88)
T ss_dssp EEEBCCTTCSCHHHHHHHHHHHHTSSSEEEEEE--TTEEEETTCHHHHHHTCCCTTCEEEEEEESTTHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEE--CCEEEECHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHH
T ss_conf 999838997646189999999985898799998--998982380999986599999999999978789999999999
No 105
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, biosynthetic protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Probab=25.48 E-value=33 Score=14.44 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=23.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 926882689868856999999998548919998
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC 33 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv 33 (250)
||||||=--|+- |- .|++.|.+.|++|.++
T Consensus 12 ~kILVTG~tGfI--G~-~l~~~Ll~~G~~V~~i 41 (404)
T 1i24_A 12 SRVMVIGGDGYC--GW-ATALHLSKKNYEVCIV 41 (404)
T ss_dssp CEEEEETTTSHH--HH-HHHHHHHHTTCEEEEE
T ss_pred CEEEEECCCCHH--HH-HHHHHHHHCCCEEEEE
T ss_conf 989998998689--99-9999999784989999
No 106
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver domain, target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=25.32 E-value=33 Score=14.42 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=20.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 26882689868856999999998548919998
Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWIC 33 (250)
Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv 33 (250)
||||.-||-.. ...|...|+..|++|..+
T Consensus 5 rILIVDDd~~~---~~~l~~~L~~~g~~v~~a 33 (143)
T 3jte_A 5 KILVIDDESTI---LQNIKFLLEIDGNEVLTA 33 (143)
T ss_dssp EEEEECSCHHH---HHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCHHH---HHHHHHHHHHCCCEEEEE
T ss_conf 89999699999---999999999879999997
No 107
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural genomics, PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=24.54 E-value=34 Score=14.33 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=26.4
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 926882689868856999999998548919998179985
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQ 39 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~ 39 (250)
|||+|. |+..-|. .+++.|.+.|++|+++=++.++
T Consensus 1 m~iiI~---G~g~~g~-~la~~L~~~g~~vvvid~d~~~ 35 (218)
T 3l4b_C 1 MKVIII---GGETTAY-YLARSMLSRKYGVVIINKDREL 35 (218)
T ss_dssp CCEEEE---CCHHHHH-HHHHHHHHTTCCEEEEESCHHH
T ss_pred CEEEEE---CCCHHHH-HHHHHHHHCCCCEEEEECCHHH
T ss_conf 989999---9889999-9999999789989999999999
No 108
>1sph_A Histidine-containing phosphocarrier protein HPR; phosphotransferase; 2.00A {Bacillus subtilis} SCOP: d.94.1.1 PDB: 1jem_A* 2hid_A 2hpr_A
Probab=24.22 E-value=30 Score=14.64 Aligned_cols=76 Identities=13% Similarity=0.132 Sum_probs=44.7
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r 3 ILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250)
Q Consensus 3 ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250)
+-|+|..|+++-=-..|++.++.+..+|++-. .++..-+.|+----.|.+++-..=...++|.=++-+.-+|..++
T Consensus 6 ~~I~n~~GlHARPAa~lv~~a~~f~s~I~i~~--~~~~~~akSil~lm~L~~~~G~~i~i~~~G~De~~A~~~l~~~l 81 (88)
T 1sph_A 6 FKVTADSGIHARPATVLVQTASKYDADVNLEY--NGKTVNLKDIMGVMSLGIAKGAEITISASGADENDALNALEETM 81 (88)
T ss_dssp EEBCCTTCSCHHHHHHHHHHHTTSSSEEEEEE--TTEEEETTCHHHHHHHCCCTTCEEEEEEESTTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEE--CCEEEECHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH
T ss_conf 99907996646089999999975898899998--99998008199998659999999999997858999999999999
No 109
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=23.63 E-value=35 Score=14.23 Aligned_cols=122 Identities=11% Similarity=0.089 Sum_probs=67.4
Q ss_pred ECCCC-CCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCCCCC
Q ss_conf 26898-68856999999998548919998179985650320224897058897110476327279999999875046454
Q gi|255764489|r 6 TNDDG-IKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMSDKKP 84 (250)
Q Consensus 6 tNDDG-~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~~~~p 84 (250)
+|||| |+-.+++.+.+-+.+.|.+-.++ . --+|-+.++|..+-.++ +........++.|
T Consensus 24 ~~~~~~iD~~~~~~~i~~l~~~Gv~gl~i--~-GstGE~~~Ls~eEr~~l-----------------~~~~~~~~~~~~~ 83 (314)
T 3d0c_A 24 LEGTREIDWKGLDDNVEFLLQNGIEVIVP--N-GNTGEFYALTIEEAKQV-----------------ATRVTELVNGRAT 83 (314)
T ss_dssp CTTTCCBCHHHHHHHHHHHHHTTCSEECT--T-SGGGTGGGSCHHHHHHH-----------------HHHHHHHHTTSSE
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEE--C-EECCCHHHCCHHHHHHH-----------------HHHHHHHCCCCEE
T ss_conf 79999839999999999999769998996--8-50000534899999999-----------------9988887099514
Q ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECC
Q ss_conf 1999714888531023334577789988987189853222001356766147888884999999986778667354314
Q gi|255764489|r 85 DLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPNTTLCNIN 163 (250)
Q Consensus 85 DlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~~~~~~~~~~~a~~~~~~ii~~l~~~~~p~~~vlNIN 163 (250)
|+.|+ |.++- -|+--|..+.-.|+-+|.+..-+... ...+....|..+|.... .+| -.++|..
T Consensus 84 --vi~g~--~~st~------~~i~~a~~a~~~Gad~i~v~~P~~~~--~~~~~i~~~f~~ia~~~---~~P-i~iY~~p 146 (314)
T 3d0c_A 84 --VVAGI--GYSVD------TAIELGKSAIDSGADCVMIHQPVHPY--ITDAGAVEYYRNIIEAL---DAP-SIIYFKD 146 (314)
T ss_dssp --EEEEE--CSSHH------HHHHHHHHHHHTTCSEEEECCCCCSC--CCHHHHHHHHHHHHHHS---SSC-EEEEECC
T ss_pred --EEEEC--CCCHH------HHHHHHHHHHHCCCCEEECCCCCCCC--CCHHHHHHHHHHHHHCC---CCC-EEEEEEC
T ss_conf --99746--88889------99999999997298844205885567--76799999999997504---798-5777414
No 110
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=23.54 E-value=35 Score=14.21 Aligned_cols=33 Identities=18% Similarity=0.403 Sum_probs=24.6
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 92688268986885699999999854891999817998
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMD 38 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~ 38 (250)
||||||=-.+-. ..|.+.|++.|.+| +..|-.+
T Consensus 2 ~~IlitRp~~~~----~~l~~~L~~~G~~~-~~~Pli~ 34 (240)
T 3mw8_A 2 MKLLLTRPEGKN----AAMASALDALAIPY-LVEPLLS 34 (240)
T ss_dssp CCEEECSCTTSC----HHHHHHHHHHTCCE-EECCSCE
T ss_pred CEEEEECCHHHH----HHHHHHHHHCCCCE-EEECCEE
T ss_conf 799990857888----99999999889959-9947766
No 111
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92, PSI-2; 2.10A {Neptuniibacter caesariensis}
Probab=22.60 E-value=37 Score=14.10 Aligned_cols=79 Identities=16% Similarity=0.277 Sum_probs=44.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCC
Q ss_conf 26882689868856999999998548919998179985650320224897058897110476327279999999875046
Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMSD 81 (250)
Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~~ 81 (250)
||||.-||-.. ...|.+.|+..|++|.++. ++. -|+..+..
T Consensus 9 ~ILiVDDd~~~---~~~l~~~L~~~g~~v~~a~--------------------------------~~~----~Al~~l~~ 49 (154)
T 2rjn_A 9 TVMLVDDEQPI---LNSLKRLIKRLGCNIITFT--------------------------------SPL----DALEALKG 49 (154)
T ss_dssp EEEEECSCHHH---HHHHHHHHHTTTCEEEEES--------------------------------CHH----HHHHHHTT
T ss_pred EEEEEECCHHH---HHHHHHHHHHCCCEEEEEC--------------------------------CHH----HHHHHHHC
T ss_conf 89999799999---9999999998799899989--------------------------------999----99999862
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 45419997148885310233345777899889871898532220
Q gi|255764489|r 82 KKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250)
Q Consensus 82 ~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250)
.+||+||.-+|....-|.+++ ...++ ....+|-|-+|-
T Consensus 50 ~~~dliilD~~mp~~~G~~~l-----~~ir~-~~~~~piI~lt~ 87 (154)
T 2rjn_A 50 TSVQLVISDMRMPEMGGEVFL-----EQVAK-SYPDIERVVISG 87 (154)
T ss_dssp SCCSEEEEESSCSSSCHHHHH-----HHHHH-HCTTSEEEEEEC
T ss_pred CCCCEEEECCCCCCCCCHHHH-----HHHHH-HCCCCCEEEEEC
T ss_conf 899889966888888818999-----99998-588997899986
No 112
>2hun_A 336AA long hypothetical DTDP-glucose 4,6- dehydratase; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii OT3}
Probab=22.47 E-value=37 Score=14.09 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=19.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHC--CCCEEEE
Q ss_conf 92688268986885699999999854--8919998
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSI--SDDIWIC 33 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~--~~~v~vv 33 (250)
||||||=-.|+=.- .|++.|.+. +++|+.+
T Consensus 4 MkILITGatGfiG~---~l~~~L~~~~~~~~V~~~ 35 (336)
T 2hun_A 4 MKLLVTGGMGFIGS---NFIRYILEKHPDWEVINI 35 (336)
T ss_dssp CEEEEETTTSHHHH---HHHHHHHHHCTTCEEEEE
T ss_pred CEEEEECCCCHHHH---HHHHHHHHCCCCCEEEEE
T ss_conf 88999878878999---999999966999789999
No 113
>1kkl_H Phosphocarrier protein HPR; phosphorylation, protein kinase, bacteria, protein/protein interaction, transferase; 2.80A {Bacillus subtilis} SCOP: d.94.1.1 PDB: 1kkm_H*
Probab=22.18 E-value=38 Score=14.05 Aligned_cols=77 Identities=14% Similarity=0.142 Sum_probs=45.9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 2688268986885699999999854891999817998565032022489705889711047632727999999987504
Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS 80 (250)
Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~ 80 (250)
.+-|+|..|++|---..|++.++.+..+|++..- .+..-+.|+----.|.+++-..=...++|.=++-+.-+|..++
T Consensus 17 ~v~I~n~~GLHARPAa~lv~~a~~f~s~I~i~~~--~~~v~aKSil~lm~L~~~~G~~i~i~~~G~De~~A~~~l~~~l 93 (100)
T 1kkl_H 17 TFKVTADSGIHARPATVLVQTASKYDADVNLEYN--GKTVNLKSIMGVMSLGIAKGAEITISASGADENDALNALEETM 93 (100)
T ss_dssp EEEBCCTTCSCHHHHHHHHHHHHTCSSEEEEEET--TEEEETTCHHHHHHTCCCTTCEEEEEEESTTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEC--CEEEECHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHH
T ss_conf 9999089966560899999999758978999989--9998528299998659999999999997868999999999999
No 114
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=21.86 E-value=38 Score=14.01 Aligned_cols=44 Identities=7% Similarity=0.112 Sum_probs=22.7
Q ss_pred HHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 87504645419997148885310233345777899889871898532220
Q gi|255764489|r 76 LQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQ 125 (250)
Q Consensus 76 l~~l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~ 125 (250)
+..+...+||+||.-+|...--|.+++- .+-.....+|=|.+|.
T Consensus 44 l~~~~~~~pDlvllDi~mP~~~G~e~~~------~ir~~~~~~~iivlt~ 87 (153)
T 3cz5_A 44 YRLYRETTPDIVVMDLTLPGPGGIEATR------HIRQWDGAARILIFTM 87 (153)
T ss_dssp HHHHHTTCCSEEEECSCCSSSCHHHHHH------HHHHHCTTCCEEEEES
T ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHH------HHHHHCCCCCEEEEEE
T ss_conf 9997546996899964579987899999------9998589996899981
No 115
>2jky_A Hypoxanthine-guanine phosphoribosyltransferase; nucleus, cytoplasm, magnesium, GMP complex, FLIP peptide-plane, glycosyltransferase; HET: 5GP; 2.3A {Saccharomyces cerevisiae} PDB: 2jkz_A*
Probab=21.45 E-value=39 Score=13.96 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=26.5
Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999875046454199971488853102333457778998898718985
Q gi|255764489|r 70 DCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRS 120 (250)
Q Consensus 70 Dcv~~~l~~l~~~~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~Gips 120 (250)
+|-.+|-. +.+.+||+|| ||..| |-+=|.+=+..+|+|.
T Consensus 16 ~~~~La~~-I~~~~pD~IV-gI~rG----------G~i~A~~ls~~L~~~~ 54 (213)
T 2jky_A 16 LCQVSAER-IKNFKPDLII-AIGGG----------GFIPARILRTFLKEPG 54 (213)
T ss_dssp HHHTTHHH-HHHHCCSEEE-ECSGG----------GHHHHHHHHHHHCCTT
T ss_pred HHHHHHHH-HHCCCCCEEE-EECCC----------CHHHHHHHHHHHCCCC
T ss_conf 99999999-7588999999-98988----------8999999999852313
No 116
>1t70_A Phosphatase; crystal, X-RAY crystallography, structural genomics, berkeley structural genomics center, BSGC, PSI; 2.30A {Deinococcus radiodurans R1} SCOP: d.159.1.9
Probab=21.17 E-value=30 Score=14.62 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=28.6
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCC--CCEEEECCCCCCCCEEEEEC
Q ss_conf 926882689868856999999998548--91999817998565032022
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSIS--DDIWICAPEMDQSCLANSLT 47 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~--~~v~vvAP~~~~S~~~~ait 47 (250)
||||.- -|=+-.||.+++.+.|..+- +|. |+|=.+| |+-|..||
T Consensus 1 MkiLfi-GDIvG~~Gr~~v~~~Lp~lk~~~Df-VIaNgEN-aa~G~Git 46 (255)
T 1t70_A 1 MRVLFI-GDVFGQPGRRVLQNHLPTIRPQFDF-VIVNMEN-SAGGFGMH 46 (255)
T ss_dssp CEEEEE-CCBBHHHHHHHHHHHHHHHGGGCSE-EEEECTB-TTTTSSCC
T ss_pred CEEEEE-EECCCHHHHHHHHHHHHHHHHHCCE-EEECCCC-CCCCCCCC
T ss_conf 939999-8268988999999871877850989-9999854-78986899
No 117
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=21.17 E-value=40 Score=13.92 Aligned_cols=49 Identities=20% Similarity=0.202 Sum_probs=36.0
Q ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 5419997148885310233345777899889871898532220013567
Q gi|255764489|r 83 KPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFALSQAYTYEN 131 (250)
Q Consensus 83 ~pDlViSGiN~G~N~g~~v~ySGTvgAA~ea~~~GipsIAiS~~~~~~~ 131 (250)
..|+||-|--.=.-=|.-+--+||-..|+-|..+++|-+.+...+....
T Consensus 51 ~Vd~VlvGAd~v~~nG~v~nk~GT~~iAl~Ak~~~vPv~V~~~s~K~~~ 99 (191)
T 1w2w_B 51 PIKAAFVGADRIVRNGDTANKIGTLQLAVICKQFGIKFFVVAPKTTIDN 99 (191)
T ss_dssp CEEEEEECCSEECTTSCEEEETTHHHHHHHHHHHTCEEEEECCGGGBCS
T ss_pred CCCEEEECCCEEECCCCEEEHHHHHHHHHHHHHHCCCEEEEEEEEEECC
T ss_conf 7888998810875489887556489999999987899799842103430
No 118
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, structural genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 1li4_A* 1a7a_A*
Probab=21.17 E-value=40 Score=13.92 Aligned_cols=101 Identities=13% Similarity=0.121 Sum_probs=51.0
Q ss_pred HHHHHHHHHCCCCEEEECC--CCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCC-----CCCCCEEEE
Q ss_conf 9999999854891999817--998565032022489705889711047632727999999987504-----645419997
Q gi|255764489|r 17 ITLENIARSISDDIWICAP--EMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMS-----DKKPDLILS 89 (250)
Q Consensus 17 ~~l~~~l~~~~~~v~vvAP--~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~-----~~~pDlViS 89 (250)
..|.+.|++.|.+|.+++. -+-|.-.-.++ .+.+..+|+..|---+--.-.+...+ +.+|||++=
T Consensus 57 A~L~~tL~~~GA~V~~~~~Np~STqDdvaAaL--------~~~Gi~VfA~~g~~~eey~~~~~~~L~~~~~~~~P~liiD 128 (436)
T 3h9u_A 57 AVLIETLVELGAEVRWASCNIFSTQDHAAAAI--------AKRGIPVFAWKGETEEEYMWCMKQTLKGFSGDGYPNMLLD 128 (436)
T ss_dssp HHHHHHHHHTTCEEEEECSSTTTCCHHHHHHH--------HHTTCCEEECTTCCHHHHHHHHHHTTSCBTTTBCCSEEEE
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH--------HHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 99999999869889995589753238999999--------9769779984699989999999976313278887258983
Q ss_pred CCCCCCCC----------------C-HHHHHHHHHH-HHHHHH-HHCCCCCCCCCCCC
Q ss_conf 14888531----------------0-2333457778-998898-71898532220013
Q gi|255764489|r 90 GVNVGTNT----------------S-NHVAYSGTLA-AAFEGS-LQGIRSFALSQAYT 128 (250)
Q Consensus 90 GiN~G~N~----------------g-~~v~ySGTvg-AA~ea~-~~GipsIAiS~~~~ 128 (250)
.|..+ | ..-..||-.- =+|+.. -..+|.|++-....
T Consensus 129 ---DGgDl~~~~~~~~~~l~~~iiG~~EETTTGv~RL~~m~~~g~L~~Pvi~VNDs~t 183 (436)
T 3h9u_A 129 ---DGGDLTNYVLDECKELDGKIYGVSEETTTGVKNLYKRLQRGKLTIPAMNVNDSVT 183 (436)
T ss_dssp ---SSSHHHHHHHHHC-CCTTTCCCEEECSHHHHHHHHHHHHHTCCCSCEEECTTSHH
T ss_pred ---CCCHHHHEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEEEECCCCC
T ss_conf ---1000220001334421001242122156189999888861787886698457320
No 119
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
Probab=21.00 E-value=40 Score=13.90 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=20.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 268826898688569999999985489
Q gi|255764489|r 2 RILLTNDDGIKSKGLITLENIARSISD 28 (250)
Q Consensus 2 ~ILitNDDG~~a~gl~~l~~~l~~~~~ 28 (250)
.|.||=|||........+.++|++.+-
T Consensus 44 ~V~LTFDDg~~~~~~~~iL~~L~~~~i 70 (240)
T 1ny1_A 44 TIYLTFDNGYENGYTPKVLDVLKKHRV 70 (240)
T ss_dssp EEEEEEEESSCCSCHHHHHHHHHHTTC
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHCCC
T ss_conf 799988589984428999999998599
No 120
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=20.95 E-value=27 Score=14.93 Aligned_cols=70 Identities=11% Similarity=0.237 Sum_probs=34.4
Q ss_pred HHHHHHHHHHCCCCEEEE-CCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 999999998548919998-17998565032022489705889711047632727999999987504645419997
Q gi|255764489|r 16 LITLENIARSISDDIWIC-APEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKMSDKKPDLILS 89 (250)
Q Consensus 16 l~~l~~~l~~~~~~v~vv-AP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l~~~~pDlViS 89 (250)
|..|.+.++.+|..+.|| .+...+++....+. +.+. +.+......+|-|.+-..=++..+.++.+|.||+
T Consensus 30 l~~l~~~l~~~g~r~liVt~~~~~~~~~~~~v~--~~L~--~~~~~~~v~~~~~~~~~~e~l~~~~~~~~D~IIa 100 (376)
T 1kq3_A 30 INILEEELSRFGERAFVVIDDFVDKNVLGENFF--SSFT--KVRVNKQIFGGECSDEEIERLSGLVEEETDVVVG 100 (376)
T ss_dssp GGGHHHHHHTTCSEEEEEECHHHHHHTTCTTGG--GGCS--SSEEEEEECCSSCBHHHHHHHHTTCCTTCCEEEE
T ss_pred HHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHH--HHHH--HCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 999999999659928999897266615899999--9998--7698699718999948999999998609998999
No 121
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=20.80 E-value=40 Score=13.87 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=23.2
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 926882689868856999999998548919998
Q gi|255764489|r 1 MRILLTNDDGIKSKGLITLENIARSISDDIWIC 33 (250)
Q Consensus 1 m~ILitNDDG~~a~gl~~l~~~l~~~~~~v~vv 33 (250)
|||+|-+ +.+-.++.++++++.+|.++.|+
T Consensus 3 mKi~IID---~g~gN~~Sv~~~l~~lg~~~~ii 32 (200)
T 1ka9_H 3 MKALLID---YGSGNLRSAAKALEAAGFSVAVA 32 (200)
T ss_dssp CEEEEEC---SSCSCHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEE---CCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 7799994---89858999999999879989998
No 122
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides}
Probab=20.49 E-value=41 Score=13.83 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=10.6
Q ss_pred CCCCCCEEECCCCC
Q ss_conf 78667354314567
Q gi|255764489|r 153 QIPNTTLCNINFPR 166 (250)
Q Consensus 153 ~~p~~~vlNINiP~ 166 (250)
.-|+-.++-||.|.
T Consensus 204 ~~~Dlil~Di~mp~ 217 (286)
T 3n0r_A 204 RTPGLVLADIQLAD 217 (286)
T ss_dssp CCCSEEEEESCCTT
T ss_pred CCCCEEEEECCCCC
T ss_conf 79988998178878
No 123
>2a9v_A GMP synthase; NP_394403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=20.07 E-value=42 Score=13.78 Aligned_cols=30 Identities=17% Similarity=0.158 Sum_probs=21.8
Q ss_pred CEEEE-ECCCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 92688-26898688569999999985489199981
Q gi|255764489|r 1 MRILL-TNDDGIKSKGLITLENIARSISDDIWICA 34 (250)
Q Consensus 1 m~ILi-tNDDG~~a~gl~~l~~~l~~~~~~v~vvA 34 (250)
||||+ =|-||+ .+.++++|+++|.+|.|+.
T Consensus 14 ~~i~iiD~g~~~----~~~i~r~L~~lG~~~~vv~ 44 (212)
T 2a9v_A 14 LKIYVVDNGGQW----THREWRVLRELGVDTKIVP 44 (212)
T ss_dssp CBEEEEEESCCT----TCHHHHHHHHTTCBCCEEE
T ss_pred CEEEEEECCCCH----HHHHHHHHHHCCCEEEEEE
T ss_conf 679999998768----9999999997898389996
No 124
>1o1x_A Ribose-5-phosphate isomerase RPIB; TM1080, structural genomics, JCSG, PSI, protein structure initiative; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=20.04 E-value=42 Score=13.77 Aligned_cols=116 Identities=15% Similarity=0.146 Sum_probs=59.1
Q ss_pred CEEEEECCCC-CCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHC
Q ss_conf 9268826898-688569999999985489199981799856503202248970588971104763272799999998750
Q gi|255764489|r 1 MRILLTNDDG-IKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKKRFAVHGTPVDCVVIALQKM 79 (250)
Q Consensus 1 m~ILitNDDG-~~a~gl~~l~~~l~~~~~~v~vvAP~~~~S~~~~ait~~~~~~~~~~~~~~~~v~GtPaDcv~~~l~~l 79 (250)
|||-|..|.. ++-. ..|++.|++.|++|.-+-|..+.|- + .|-=+..++...
T Consensus 13 MKI~igsDHaG~~lK--~~l~~~L~~~g~ev~D~G~~~~~~~----------------D--------Ypd~a~~va~~V- 65 (155)
T 1o1x_A 13 VKIAIASDHAAFELK--EKVKNYLLGKGIEVEDHGTYSEESV----------------D--------YPDYAKKVVQSI- 65 (155)
T ss_dssp CEEEEEECSTTHHHH--HHHHHHHHHTTCEEEECCCCSSSCC----------------C--------HHHHHHHHHHHH-
T ss_pred EEEEEEECCHHHHHH--HHHHHHHHHCCCEEEECCCCCCCCC----------------C--------CHHHHHHHHHHH-
T ss_conf 399997487179999--9999999987998997899987777----------------8--------317899999997-
Q ss_pred CCCCCCE--EEECCCCCCCCCHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCC-----CCCC------CHHHHHHHHHHH
Q ss_conf 4645419--9971488853102333457778998898-718985322200135-----6766------147888884999
Q gi|255764489|r 80 SDKKPDL--ILSGVNVGTNTSNHVAYSGTLAAAFEGS-LQGIRSFALSQAYTY-----ENMI------PWEVSETHAPRV 145 (250)
Q Consensus 80 ~~~~pDl--ViSGiN~G~N~g~~v~ySGTvgAA~ea~-~~GipsIAiS~~~~~-----~~~~------~~~~a~~~~~~i 145 (250)
...+-|+ ++.|=- +|.+|-|. +.||.+-.+.-.+.. .+.. .+-.....+.++
T Consensus 66 ~~~~~~~GIliCGtG--------------~G~sIaANK~~GIRAal~~d~~~A~~ar~HNnaNVL~lGar~~~~~~a~~i 131 (155)
T 1o1x_A 66 LSNEADFGILLCGTG--------------LGMSIAANRYRGIRAALCLFPDMARLARSHNNANILVLPGRLIGAELAFWI 131 (155)
T ss_dssp HTTSCSEEEEEESSS--------------HHHHHHHTTSTTCCEEECSSHHHHHHHHHTTCCSEEEEETTTSCHHHHHHH
T ss_pred HCCCCCEEEEECCCC--------------HHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHH
T ss_conf 347763479964898--------------799999736898599996488999999982697189977754699999999
Q ss_pred HHHHHHCCCCCC
Q ss_conf 999986778667
Q gi|255764489|r 146 LRQLLKTQIPNT 157 (250)
Q Consensus 146 i~~l~~~~~p~~ 157 (250)
++.+++..+..+
T Consensus 132 v~~fl~t~F~gg 143 (155)
T 1o1x_A 132 VDTFLSTPFDGG 143 (155)
T ss_dssp HHHHHHCCCCCT
T ss_pred HHHHHCCCCCCC
T ss_conf 999976998986
Done!