RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|255764489|ref|YP_003065094.2| stationary phase survival
protein SurE [Candidatus Liberibacter asiaticus str. psy62]
         (250 letters)



>gnl|CDD|178982 PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.
          Length = 250

 Score =  242 bits (621), Expect = 6e-65
 Identities = 88/249 (35%), Positives = 139/249 (55%), Gaps = 7/249 (2%)

Query: 1   MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKK 60
           MRILLTNDDGI + G+  L    R +  D+ + AP+ ++S  ++SLT++R +    +   
Sbjct: 1   MRILLTNDDGIHAPGIRALAEALREL-ADVTVVAPDRERSGASHSLTLTRPLRVEKVDNG 59

Query: 61  RFAVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRS 120
            +AV GTP DCV +AL  + D KPDL++SG+N G N  + V YSGT+AAA EG+L GI +
Sbjct: 60  FYAVDGTPTDCVHLALNGLLDPKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPA 119

Query: 121 FALSQAYTYENMIP--WEVSETHAPRVLRQLLKTQIPNTTLCNINFPRCSPEEVQKTVVT 178
            A+S A +  +     +E +   A  ++R+LL+  +P  TL N+N P   PEE++   VT
Sbjct: 120 IAVSLAVSEGSRGWRDFETAAKVARELVRKLLEKPLPPGTLLNVNVPDLPPEEIKGIRVT 179

Query: 179 AQGK--PCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITTDLT 236
             GK      +  K++       +Y +      ++  E +D  A+    +S+TP+  DLT
Sbjct: 180 RLGKRHYAEEVI-KRVDPRGR-PYYWIGGAGLEEDAGEGTDFHAVAEGYVSITPLQLDLT 237

Query: 237 DYNSQQYIS 245
            Y +   + 
Sbjct: 238 AYAALDELK 246


>gnl|CDD|184405 PRK13931, PRK13931, stationary phase survival protein SurE;
           Provisional.
          Length = 261

 Score =  174 bits (444), Expect = 1e-44
 Identities = 92/255 (36%), Positives = 132/255 (51%), Gaps = 20/255 (7%)

Query: 1   MRILLTNDDGIKSKGLITLENIARSISD---DIWICAPEMDQSCLANSLTMSRNIACRTI 57
           MRIL+TNDDGI + GL  LE IA  ++    ++W  AP  +QS + + ++ +  +    +
Sbjct: 1   MRILITNDDGINAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAEL 60

Query: 58  SKKRFAVHGTPVDCVVIALQK-MSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQ 116
             +RFA  G+P DCV+ AL   M D  PDL+LSGVN G N++ +V YSGT+  A E +LQ
Sbjct: 61  GPRRFAAEGSPADCVLAALYDVMKDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQ 120

Query: 117 GIRSFALSQAYTYENMI---PWEVSETHAPRVLRQLLKTQIPNT----TLCNINFPRCSP 169
           G+ + ALSQ Y   N     P+E + TH  RV+R+LL+    +        N+NFP    
Sbjct: 121 GLPAIALSQYYGPRNEGLDDPFEAARTHGARVVRKLLEAGPWDDEDYRLFYNVNFPPVPA 180

Query: 170 EEVQKTVVTAQGKPCFSIDAKQISTNDNMSHYCLTF-----GDHLKNLCEKSDAFAIQHN 224
            +V+   V AQG   F    +      +MS     F     G         +DA      
Sbjct: 181 ADVKGIRVAAQG---FREGTR-FGVEPHMSPSGRRFLWIKGGAQQVPTAPGTDAAVNLDG 236

Query: 225 MISVTPITTDLTDYN 239
            ISVTP+  DLT ++
Sbjct: 237 YISVTPMRADLTAHD 251


>gnl|CDD|161700 TIGR00087, surE, 5'/3'-nucleotidase SurE.  E. coli SurE is
           Recommended cutoffs are 15 for homology, 40 for probable
           orthology, and 200 for orthology with full-length
           homology.
          Length = 244

 Score =  161 bits (410), Expect = 1e-40
 Identities = 72/245 (29%), Positives = 123/245 (50%), Gaps = 10/245 (4%)

Query: 1   MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTI--- 57
           M+ILLTNDDGI S G+  L   A     ++ + AP   +S   +SLT+   +    +   
Sbjct: 1   MKILLTNDDGIHSPGIRALYQ-ALKELGEVTVVAPARQRSGTGHSLTLFEPLRVGQVKVK 59

Query: 58  -SKKRFAVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQ 116
                +AV GTP DCV++ + ++  + PDL++SG+N G N    V YSGT+ AA E ++ 
Sbjct: 60  NGAHIYAVDGTPTDCVILGINELMPEVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIH 119

Query: 117 GIRSFALSQAY--TYENMIP--WEVSETHAPRVLRQLLKTQIPNTTLCNINFPRCSPEEV 172
           G+ + A+S      Y+N  P  ++++      +++ LLK  +P   L N+N P     + 
Sbjct: 120 GVPAIAISLQIFNGYKNSSPLDFDIAAKVTNAIVKNLLKNGLPGGDLLNVNVPLVPSIQN 179

Query: 173 QKTVVTAQGKPCFSIDAKQISTNDNMSHYCLT-FGDHLKNLCEKSDAFAIQHNMISVTPI 231
               +T  G+  ++   ++ +     S+Y +        +    +D  AI+   IS+TP+
Sbjct: 180 TGIRITRLGRRMYATSVEERTDPRGRSYYWIGGDPGARCDREPGTDVDAIRSGYISITPL 239

Query: 232 TTDLT 236
             DLT
Sbjct: 240 KVDLT 244


>gnl|CDD|172445 PRK13932, PRK13932, stationary phase survival protein SurE;
           Provisional.
          Length = 257

 Score =  159 bits (404), Expect = 6e-40
 Identities = 86/246 (34%), Positives = 139/246 (56%), Gaps = 19/246 (7%)

Query: 3   ILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISK-KR 61
           IL+ NDDGI+ +G+  L    + I   + + AP    S +++++T+   +  +   K  R
Sbjct: 8   ILVCNDDGIEGEGIHVLAASMKKIGR-VTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNR 66

Query: 62  F---AVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGI 118
           F    V GTPVDC+ +AL  +  +KPDLI+SG+N G+NT+ +  YSGT+AAA EG++QGI
Sbjct: 67  FFGYTVSGTPVDCIKVALSHILPEKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGI 126

Query: 119 RSFALSQAYTYENMIPWEVSETHAPRVLRQL----LKTQIPNTTLCNINFPRCSPEEVQK 174
            S A S   TYEN        T+A +  R+L    L+  +P  T+ ++N P     ++Q 
Sbjct: 127 PSLAFSLT-TYEN-----ADFTYAGKFARKLARKVLREGLPPDTILSVNIPNVPESDIQG 180

Query: 175 TVVTAQGKPCFSIDAKQISTND--NMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPIT 232
            ++T QG+  +  DA  I  +D     +Y L     L +     D +A++HN ++VTP++
Sbjct: 181 VLITRQGRSRWEEDA--IERHDMYGNPYYWLNGTLQLLDDSLTQDEYAVRHNYVAVTPLS 238

Query: 233 TDLTDY 238
            DLT++
Sbjct: 239 CDLTNH 244


>gnl|CDD|184407 PRK13935, PRK13935, stationary phase survival protein SurE;
           Provisional.
          Length = 253

 Score =  139 bits (351), Expect = 8e-34
 Identities = 79/250 (31%), Positives = 132/250 (52%), Gaps = 21/250 (8%)

Query: 1   MRILLTNDDGIKSKGLITLENIARSISD--DIWICAPEMDQSCLANSLTMSRNIACRT-- 56
           M IL+TNDDGI S G+I L   A  +S+  ++++ AP+ ++S   +++T+   +  +   
Sbjct: 1   MNILVTNDDGITSPGIIIL---AEYLSEKHEVFVVAPDKERSATGHAITIRVPLWAKKVF 57

Query: 57  ISKKRF--AVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGS 114
           IS++    A  GTP DCV +    + DKK DL++SG+N G N    V YSGT++ A EG+
Sbjct: 58  ISERFVAYATTGTPADCVKLGYDVIMDKKVDLVISGINRGPNLGTDVLYSGTVSGALEGA 117

Query: 115 LQGIRSFALSQAYTYENMIPWEVSETHAPRVLRQLLK----TQIPNTTLCNINFPRCSPE 170
           + G+ S A+S +  +EN       ET A R L   L+    + +P  T  NIN P     
Sbjct: 118 MMGVPSIAIS-SADFENPD----YET-AARFLLNFLEEFDFSLLPPFTALNINVPSVPYG 171

Query: 171 EVQKTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKN-LCEKSDAFAIQHNMISVT 229
           E++   +T Q +  ++ D  +   +   + Y    G+ +++   +  D  A++   +SVT
Sbjct: 172 EIKGWKLTRQSRRRYN-DYFEERVDPFGNKYYWMMGEIIEDDPDDDVDYKAVREGYVSVT 230

Query: 230 PITTDLTDYN 239
           PI   LT+  
Sbjct: 231 PIHVFLTNEE 240


>gnl|CDD|184406 PRK13933, PRK13933, stationary phase survival protein SurE;
           Provisional.
          Length = 253

 Score =  131 bits (331), Expect = 2e-31
 Identities = 81/246 (32%), Positives = 134/246 (54%), Gaps = 11/246 (4%)

Query: 1   MRILLTNDDGIKSKGLITLENIARSIS--DDIWICAPEMDQSCLANSLTMSRNIACRT-- 56
           M ILLTNDDGI ++G+ TL   A  +S   ++ I APE  +S  ++S+T+   I  +   
Sbjct: 1   MNILLTNDDGINAEGINTL---AELLSKYHEVIIVAPENQRSASSHSITIYEPIIIKEVK 57

Query: 57  ---ISKKRFAVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEG 113
              I+ K +++ GTP DCV +AL K+     D+++SG+N G N  N + YSGT++AA EG
Sbjct: 58  LEGINSKAYSISGTPADCVRVALDKLVPDNIDMVISGINKGLNIGNDILYSGTVSAAIEG 117

Query: 114 SLQGIRSFALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPNTTLCNINFPRCSPEEVQ 173
           ++  + S A+S          ++++  +A  VL  L K  + N  + N+N P CS EE++
Sbjct: 118 AIYKVPSIAVSADVKKGKDENYKIAAKYALEVLNILKKEDLKNDVVLNLNVPFCSEEEIK 177

Query: 174 KTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITT 233
              V   G   F+    +    +    Y L  GD  K++ E +D + I+   +++TP+  
Sbjct: 178 GIKVCKVGNKTFNTYFSEEIDEEGNKVYKLE-GDINKDIYEGTDVYYIRQGYVTLTPLHY 236

Query: 234 DLTDYN 239
           DLT++ 
Sbjct: 237 DLTNFK 242


>gnl|CDD|139993 PRK13934, PRK13934, stationary phase survival protein SurE;
           Provisional.
          Length = 266

 Score =  104 bits (260), Expect = 3e-23
 Identities = 77/261 (29%), Positives = 123/261 (47%), Gaps = 24/261 (9%)

Query: 1   MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSC------LANSLTMSRNIAC 54
           M+IL+TNDDG+ S GL  L      +  ++ + APE  +S       L   L M     C
Sbjct: 1   MKILVTNDDGVHSPGLRLLYEFVSPL-GEVDVVAPETPKSATGLGITLHKPLRMYEVDLC 59

Query: 55  RTISKKRFAVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAY-SGTLAAAFEG 113
                K +A  GTP D + +A   +  +K DL+LSG+N+G NTS  V   SGTL AAF+ 
Sbjct: 60  GF---KVYATSGTPSDTIYLATYGLG-RKYDLVLSGINLGDNTSLQVILSSGTLGAAFQA 115

Query: 114 SLQGIRSFALSQAYT------YENMIPWEVSETHAPRVLRQLLKTQIPN-TTLCNINFPR 166
           +L GI + A S AY        E+    E+ +         +LK  +P    + ++NFPR
Sbjct: 116 ALLGIPAVAYS-AYVDDWEELLEDGEALEIMKAVVRATAEYVLKRGMPKGVDVISVNFPR 174

Query: 167 CSPEEVQKTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAI-QHNM 225
                V+  +V A  K  F+   ++       ++Y L +G         +D + + +   
Sbjct: 175 RLRRGVKAKLVKA-AKLRFAQQVERRVDPRGRAYYWL-YG-TPLEPEPGTDVYVVLKEGN 231

Query: 226 ISVTPITTDLTDYNSQQYISL 246
           I++TP+T +L   + ++   L
Sbjct: 232 IAITPLTLNLNALDGERAADL 252


>gnl|CDD|181666 PRK09133, PRK09133, hypothetical protein; Provisional.
          Length = 472

 Score = 28.0 bits (63), Expect = 2.3
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 5/43 (11%)

Query: 141 HAPRVLRQLLKTQIPNTTLCNINFPRCSPEEVQKTVVTAQGKP 183
           HA   L Q     + N   C I FP  + E V+ T+      P
Sbjct: 330 HAENALPQRATANV-N---CRI-FPGDTIEAVRATLKQVVADP 367


>gnl|CDD|179891 PRK04914, PRK04914, ATP-dependent helicase HepA; Validated.
          Length = 956

 Score = 27.1 bits (61), Expect = 5.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)

Query: 133 IPWEVSETHAPRVL 146
           I  EV   HAPRVL
Sbjct: 160 IAHEVGRRHAPRVL 173


>gnl|CDD|183392 PRK12271, rps10p, 30S ribosomal protein S10P; Reviewed.
          Length = 102

 Score = 26.8 bits (60), Expect = 5.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)

Query: 144 RVLRQLLKTQIPNT 157
           R LRQL++ ++P  
Sbjct: 80  RALRQLMRIRVPED 93


>gnl|CDD|129398 TIGR00297, TIGR00297, conserved hypothetical protein TIGR00297. 
          Length = 237

 Score = 26.3 bits (58), Expect = 8.0
 Identities = 12/46 (26%), Positives = 17/46 (36%)

Query: 78  KMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFAL 123
           K   K P LI +   V   T   ++  GTLA         +  + L
Sbjct: 133 KAYGKNPRLITTLQRVEPGTDGAISVEGTLAGFAGALAIALLGYLL 178


>gnl|CDD|150236 pfam09491, RE_AlwI, AlwI restriction endonuclease.  This family
           includes the AlwI (recognizes GGATC), Bsp6I (recognizes
           GC^NGC), BstNBI (recognizes GASTC), PleI(recognizes
           GAGTC) and MlyI (recognizes GAGTC) restriction
           endonucleases.
          Length = 429

 Score = 26.2 bits (58), Expect = 8.3
 Identities = 9/11 (81%), Positives = 10/11 (90%)

Query: 146 LRQLLKTQIPN 156
           LRQLLK QIP+
Sbjct: 37  LRQLLKYQIPS 47


>gnl|CDD|185033 PRK15074, PRK15074, inosine/guanosine kinase; Provisional.
          Length = 434

 Score = 26.1 bits (58), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 123 LSQAYTYENMIPWEVSETHAPRVLRQL 149
           L+Q   Y N + +EV   H+PR+ R L
Sbjct: 394 LAQVCKYANRVSYEVLNQHSPRLSRGL 420


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.318    0.130    0.383 

Gapped
Lambda     K      H
   0.267   0.0748    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,738,288
Number of extensions: 215636
Number of successful extensions: 380
Number of sequences better than 10.0: 1
Number of HSP's gapped: 357
Number of HSP's successfully gapped: 17
Length of query: 250
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 159
Effective length of database: 4,028,145
Effective search space: 640475055
Effective search space used: 640475055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)