RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|255764489|ref|YP_003065094.2| stationary phase survival protein SurE [Candidatus Liberibacter asiaticus str. psy62] (250 letters) >gnl|CDD|178982 PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional. Length = 250 Score = 242 bits (621), Expect = 6e-65 Identities = 88/249 (35%), Positives = 139/249 (55%), Gaps = 7/249 (2%) Query: 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKK 60 MRILLTNDDGI + G+ L R + D+ + AP+ ++S ++SLT++R + + Sbjct: 1 MRILLTNDDGIHAPGIRALAEALREL-ADVTVVAPDRERSGASHSLTLTRPLRVEKVDNG 59 Query: 61 RFAVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRS 120 +AV GTP DCV +AL + D KPDL++SG+N G N + V YSGT+AAA EG+L GI + Sbjct: 60 FYAVDGTPTDCVHLALNGLLDPKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPA 119 Query: 121 FALSQAYTYENMIP--WEVSETHAPRVLRQLLKTQIPNTTLCNINFPRCSPEEVQKTVVT 178 A+S A + + +E + A ++R+LL+ +P TL N+N P PEE++ VT Sbjct: 120 IAVSLAVSEGSRGWRDFETAAKVARELVRKLLEKPLPPGTLLNVNVPDLPPEEIKGIRVT 179 Query: 179 AQGK--PCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITTDLT 236 GK + K++ +Y + ++ E +D A+ +S+TP+ DLT Sbjct: 180 RLGKRHYAEEVI-KRVDPRGR-PYYWIGGAGLEEDAGEGTDFHAVAEGYVSITPLQLDLT 237 Query: 237 DYNSQQYIS 245 Y + + Sbjct: 238 AYAALDELK 246 >gnl|CDD|184405 PRK13931, PRK13931, stationary phase survival protein SurE; Provisional. Length = 261 Score = 174 bits (444), Expect = 1e-44 Identities = 92/255 (36%), Positives = 132/255 (51%), Gaps = 20/255 (7%) Query: 1 MRILLTNDDGIKSKGLITLENIARSISD---DIWICAPEMDQSCLANSLTMSRNIACRTI 57 MRIL+TNDDGI + GL LE IA ++ ++W AP +QS + + ++ + + + Sbjct: 1 MRILITNDDGINAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAEL 60 Query: 58 SKKRFAVHGTPVDCVVIALQK-MSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQ 116 +RFA G+P DCV+ AL M D PDL+LSGVN G N++ +V YSGT+ A E +LQ Sbjct: 61 GPRRFAAEGSPADCVLAALYDVMKDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQ 120 Query: 117 GIRSFALSQAYTYENMI---PWEVSETHAPRVLRQLLKTQIPNT----TLCNINFPRCSP 169 G+ + ALSQ Y N P+E + TH RV+R+LL+ + N+NFP Sbjct: 121 GLPAIALSQYYGPRNEGLDDPFEAARTHGARVVRKLLEAGPWDDEDYRLFYNVNFPPVPA 180 Query: 170 EEVQKTVVTAQGKPCFSIDAKQISTNDNMSHYCLTF-----GDHLKNLCEKSDAFAIQHN 224 +V+ V AQG F + +MS F G +DA Sbjct: 181 ADVKGIRVAAQG---FREGTR-FGVEPHMSPSGRRFLWIKGGAQQVPTAPGTDAAVNLDG 236 Query: 225 MISVTPITTDLTDYN 239 ISVTP+ DLT ++ Sbjct: 237 YISVTPMRADLTAHD 251 >gnl|CDD|161700 TIGR00087, surE, 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology. Length = 244 Score = 161 bits (410), Expect = 1e-40 Identities = 72/245 (29%), Positives = 123/245 (50%), Gaps = 10/245 (4%) Query: 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTI--- 57 M+ILLTNDDGI S G+ L A ++ + AP +S +SLT+ + + Sbjct: 1 MKILLTNDDGIHSPGIRALYQ-ALKELGEVTVVAPARQRSGTGHSLTLFEPLRVGQVKVK 59 Query: 58 -SKKRFAVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQ 116 +AV GTP DCV++ + ++ + PDL++SG+N G N V YSGT+ AA E ++ Sbjct: 60 NGAHIYAVDGTPTDCVILGINELMPEVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIH 119 Query: 117 GIRSFALSQAY--TYENMIP--WEVSETHAPRVLRQLLKTQIPNTTLCNINFPRCSPEEV 172 G+ + A+S Y+N P ++++ +++ LLK +P L N+N P + Sbjct: 120 GVPAIAISLQIFNGYKNSSPLDFDIAAKVTNAIVKNLLKNGLPGGDLLNVNVPLVPSIQN 179 Query: 173 QKTVVTAQGKPCFSIDAKQISTNDNMSHYCLT-FGDHLKNLCEKSDAFAIQHNMISVTPI 231 +T G+ ++ ++ + S+Y + + +D AI+ IS+TP+ Sbjct: 180 TGIRITRLGRRMYATSVEERTDPRGRSYYWIGGDPGARCDREPGTDVDAIRSGYISITPL 239 Query: 232 TTDLT 236 DLT Sbjct: 240 KVDLT 244 >gnl|CDD|172445 PRK13932, PRK13932, stationary phase survival protein SurE; Provisional. Length = 257 Score = 159 bits (404), Expect = 6e-40 Identities = 86/246 (34%), Positives = 139/246 (56%), Gaps = 19/246 (7%) Query: 3 ILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISK-KR 61 IL+ NDDGI+ +G+ L + I + + AP S +++++T+ + + K R Sbjct: 8 ILVCNDDGIEGEGIHVLAASMKKIGR-VTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNR 66 Query: 62 F---AVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGI 118 F V GTPVDC+ +AL + +KPDLI+SG+N G+NT+ + YSGT+AAA EG++QGI Sbjct: 67 FFGYTVSGTPVDCIKVALSHILPEKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGI 126 Query: 119 RSFALSQAYTYENMIPWEVSETHAPRVLRQL----LKTQIPNTTLCNINFPRCSPEEVQK 174 S A S TYEN T+A + R+L L+ +P T+ ++N P ++Q Sbjct: 127 PSLAFSLT-TYEN-----ADFTYAGKFARKLARKVLREGLPPDTILSVNIPNVPESDIQG 180 Query: 175 TVVTAQGKPCFSIDAKQISTND--NMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPIT 232 ++T QG+ + DA I +D +Y L L + D +A++HN ++VTP++ Sbjct: 181 VLITRQGRSRWEEDA--IERHDMYGNPYYWLNGTLQLLDDSLTQDEYAVRHNYVAVTPLS 238 Query: 233 TDLTDY 238 DLT++ Sbjct: 239 CDLTNH 244 >gnl|CDD|184407 PRK13935, PRK13935, stationary phase survival protein SurE; Provisional. Length = 253 Score = 139 bits (351), Expect = 8e-34 Identities = 79/250 (31%), Positives = 132/250 (52%), Gaps = 21/250 (8%) Query: 1 MRILLTNDDGIKSKGLITLENIARSISD--DIWICAPEMDQSCLANSLTMSRNIACRT-- 56 M IL+TNDDGI S G+I L A +S+ ++++ AP+ ++S +++T+ + + Sbjct: 1 MNILVTNDDGITSPGIIIL---AEYLSEKHEVFVVAPDKERSATGHAITIRVPLWAKKVF 57 Query: 57 ISKKRF--AVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGS 114 IS++ A GTP DCV + + DKK DL++SG+N G N V YSGT++ A EG+ Sbjct: 58 ISERFVAYATTGTPADCVKLGYDVIMDKKVDLVISGINRGPNLGTDVLYSGTVSGALEGA 117 Query: 115 LQGIRSFALSQAYTYENMIPWEVSETHAPRVLRQLLK----TQIPNTTLCNINFPRCSPE 170 + G+ S A+S + +EN ET A R L L+ + +P T NIN P Sbjct: 118 MMGVPSIAIS-SADFENPD----YET-AARFLLNFLEEFDFSLLPPFTALNINVPSVPYG 171 Query: 171 EVQKTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKN-LCEKSDAFAIQHNMISVT 229 E++ +T Q + ++ D + + + Y G+ +++ + D A++ +SVT Sbjct: 172 EIKGWKLTRQSRRRYN-DYFEERVDPFGNKYYWMMGEIIEDDPDDDVDYKAVREGYVSVT 230 Query: 230 PITTDLTDYN 239 PI LT+ Sbjct: 231 PIHVFLTNEE 240 >gnl|CDD|184406 PRK13933, PRK13933, stationary phase survival protein SurE; Provisional. Length = 253 Score = 131 bits (331), Expect = 2e-31 Identities = 81/246 (32%), Positives = 134/246 (54%), Gaps = 11/246 (4%) Query: 1 MRILLTNDDGIKSKGLITLENIARSIS--DDIWICAPEMDQSCLANSLTMSRNIACRT-- 56 M ILLTNDDGI ++G+ TL A +S ++ I APE +S ++S+T+ I + Sbjct: 1 MNILLTNDDGINAEGINTL---AELLSKYHEVIIVAPENQRSASSHSITIYEPIIIKEVK 57 Query: 57 ---ISKKRFAVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEG 113 I+ K +++ GTP DCV +AL K+ D+++SG+N G N N + YSGT++AA EG Sbjct: 58 LEGINSKAYSISGTPADCVRVALDKLVPDNIDMVISGINKGLNIGNDILYSGTVSAAIEG 117 Query: 114 SLQGIRSFALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPNTTLCNINFPRCSPEEVQ 173 ++ + S A+S ++++ +A VL L K + N + N+N P CS EE++ Sbjct: 118 AIYKVPSIAVSADVKKGKDENYKIAAKYALEVLNILKKEDLKNDVVLNLNVPFCSEEEIK 177 Query: 174 KTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITT 233 V G F+ + + Y L GD K++ E +D + I+ +++TP+ Sbjct: 178 GIKVCKVGNKTFNTYFSEEIDEEGNKVYKLE-GDINKDIYEGTDVYYIRQGYVTLTPLHY 236 Query: 234 DLTDYN 239 DLT++ Sbjct: 237 DLTNFK 242 >gnl|CDD|139993 PRK13934, PRK13934, stationary phase survival protein SurE; Provisional. Length = 266 Score = 104 bits (260), Expect = 3e-23 Identities = 77/261 (29%), Positives = 123/261 (47%), Gaps = 24/261 (9%) Query: 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSC------LANSLTMSRNIAC 54 M+IL+TNDDG+ S GL L + ++ + APE +S L L M C Sbjct: 1 MKILVTNDDGVHSPGLRLLYEFVSPL-GEVDVVAPETPKSATGLGITLHKPLRMYEVDLC 59 Query: 55 RTISKKRFAVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAY-SGTLAAAFEG 113 K +A GTP D + +A + +K DL+LSG+N+G NTS V SGTL AAF+ Sbjct: 60 GF---KVYATSGTPSDTIYLATYGLG-RKYDLVLSGINLGDNTSLQVILSSGTLGAAFQA 115 Query: 114 SLQGIRSFALSQAYT------YENMIPWEVSETHAPRVLRQLLKTQIPN-TTLCNINFPR 166 +L GI + A S AY E+ E+ + +LK +P + ++NFPR Sbjct: 116 ALLGIPAVAYS-AYVDDWEELLEDGEALEIMKAVVRATAEYVLKRGMPKGVDVISVNFPR 174 Query: 167 CSPEEVQKTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAI-QHNM 225 V+ +V A K F+ ++ ++Y L +G +D + + + Sbjct: 175 RLRRGVKAKLVKA-AKLRFAQQVERRVDPRGRAYYWL-YG-TPLEPEPGTDVYVVLKEGN 231 Query: 226 ISVTPITTDLTDYNSQQYISL 246 I++TP+T +L + ++ L Sbjct: 232 IAITPLTLNLNALDGERAADL 252 >gnl|CDD|181666 PRK09133, PRK09133, hypothetical protein; Provisional. Length = 472 Score = 28.0 bits (63), Expect = 2.3 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 5/43 (11%) Query: 141 HAPRVLRQLLKTQIPNTTLCNINFPRCSPEEVQKTVVTAQGKP 183 HA L Q + N C I FP + E V+ T+ P Sbjct: 330 HAENALPQRATANV-N---CRI-FPGDTIEAVRATLKQVVADP 367 >gnl|CDD|179891 PRK04914, PRK04914, ATP-dependent helicase HepA; Validated. Length = 956 Score = 27.1 bits (61), Expect = 5.0 Identities = 9/14 (64%), Positives = 9/14 (64%) Query: 133 IPWEVSETHAPRVL 146 I EV HAPRVL Sbjct: 160 IAHEVGRRHAPRVL 173 >gnl|CDD|183392 PRK12271, rps10p, 30S ribosomal protein S10P; Reviewed. Length = 102 Score = 26.8 bits (60), Expect = 5.6 Identities = 6/14 (42%), Positives = 10/14 (71%) Query: 144 RVLRQLLKTQIPNT 157 R LRQL++ ++P Sbjct: 80 RALRQLMRIRVPED 93 >gnl|CDD|129398 TIGR00297, TIGR00297, conserved hypothetical protein TIGR00297. Length = 237 Score = 26.3 bits (58), Expect = 8.0 Identities = 12/46 (26%), Positives = 17/46 (36%) Query: 78 KMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRSFAL 123 K K P LI + V T ++ GTLA + + L Sbjct: 133 KAYGKNPRLITTLQRVEPGTDGAISVEGTLAGFAGALAIALLGYLL 178 >gnl|CDD|150236 pfam09491, RE_AlwI, AlwI restriction endonuclease. This family includes the AlwI (recognizes GGATC), Bsp6I (recognizes GC^NGC), BstNBI (recognizes GASTC), PleI(recognizes GAGTC) and MlyI (recognizes GAGTC) restriction endonucleases. Length = 429 Score = 26.2 bits (58), Expect = 8.3 Identities = 9/11 (81%), Positives = 10/11 (90%) Query: 146 LRQLLKTQIPN 156 LRQLLK QIP+ Sbjct: 37 LRQLLKYQIPS 47 >gnl|CDD|185033 PRK15074, PRK15074, inosine/guanosine kinase; Provisional. Length = 434 Score = 26.1 bits (58), Expect = 8.4 Identities = 11/27 (40%), Positives = 16/27 (59%) Query: 123 LSQAYTYENMIPWEVSETHAPRVLRQL 149 L+Q Y N + +EV H+PR+ R L Sbjct: 394 LAQVCKYANRVSYEVLNQHSPRLSRGL 420 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.318 0.130 0.383 Gapped Lambda K H 0.267 0.0748 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,738,288 Number of extensions: 215636 Number of successful extensions: 380 Number of sequences better than 10.0: 1 Number of HSP's gapped: 357 Number of HSP's successfully gapped: 17 Length of query: 250 Length of database: 5,994,473 Length adjustment: 91 Effective length of query: 159 Effective length of database: 4,028,145 Effective search space: 640475055 Effective search space used: 640475055 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (25.3 bits)