RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|255764489|ref|YP_003065094.2| stationary phase survival
protein SurE [Candidatus Liberibacter asiaticus str. psy62]
         (250 letters)



>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein,
           stationary phase, phosphatase, mononucleotidase,
           divalent metal ION; 1.7A {Salmonella typhimurium} PDB:
           2v4o_A
          Length = 254

 Score =  209 bits (533), Expect = 5e-55
 Identities = 72/251 (28%), Positives = 122/251 (48%), Gaps = 6/251 (2%)

Query: 1   MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKK 60
           MRILL+NDDG+ + G+ TL    R  +D + + AP+ ++S  +NSLT+  ++   T    
Sbjct: 2   MRILLSNDDGVHAPGIQTLAKALREFAD-VQVVAPDRNRSGASNSLTLESSLRTFTFDNG 60

Query: 61  RFAVH-GTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIR 119
             AV  GTP DCV + +  +   +PD+++SG+N G N  + V YSGT+AAA EG   G  
Sbjct: 61  DIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFP 120

Query: 120 SFALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPNTTLCNINFPRCSPEEVQKTVVTA 179
           + A+S          ++ +      +LR L +  +    + N+N P     +V+   VT 
Sbjct: 121 ALAVSLNGYQ----HYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTR 176

Query: 180 QGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITTDLTDYN 239
            G    +            + Y +       +    +D  A+    +SVTP+  DLT ++
Sbjct: 177 CGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHS 236

Query: 240 SQQYISLSLET 250
           +   +S  L++
Sbjct: 237 AHDVVSDWLDS 247


>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function;
           1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A
           1j9k_A* 1j9l_A*
          Length = 247

 Score =  191 bits (487), Expect = 9e-50
 Identities = 68/244 (27%), Positives = 122/244 (50%), Gaps = 10/244 (4%)

Query: 1   MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISK- 59
           MRIL+TNDDGI+SKG+I L  +      ++++ AP+ ++S   +S+T+   +  + +   
Sbjct: 1   MRILVTNDDGIQSKGIIVLAELLSEE-HEVFVVAPDKERSATGHSITIHVPLWMKKVFIS 59

Query: 60  ---KRFAVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQ 116
                ++  GTP DCV +A   + DK+ DLI+SGVN G N    + +SGT++ A EG++ 
Sbjct: 60  ERVVAYSTTGTPADCVKLAYNVVMDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMM 119

Query: 117 GIRSFALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPNTTLCNINFPRCSPEEVQKTV 176
            I S A+S A        +E +       L++   + +   T+ NIN P     E++   
Sbjct: 120 NIPSIAISSA--NYESPDFEGAARFLIDFLKEFDFSLLDPFTMLNINVP---AGEIKGWR 174

Query: 177 VTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITTDLT 236
            T Q +  ++   ++  +     +Y +       +  +  D  A++   +S+TPI   LT
Sbjct: 175 FTRQSRRRWNDYFEERVSPFGEKYYWMMGEVIEDDDRDDVDYKAVREGYVSITPIHPFLT 234

Query: 237 DYNS 240
           +   
Sbjct: 235 NEQC 238


>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase,
           mixed alpha/beta protein, N-terminal rossmann-fold like;
           2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
          Length = 280

 Score =  186 bits (473), Expect = 4e-48
 Identities = 72/254 (28%), Positives = 118/254 (46%), Gaps = 14/254 (5%)

Query: 1   MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISK- 59
           M+IL+TNDDG+ S GL  L   A S+  D+ + APE  +S     +T+ + +    +   
Sbjct: 1   MKILVTNDDGVHSPGLRLLYQFALSLG-DVDVVAPESPKSATGLGITLHKPLRMYEVDLC 59

Query: 60  --KRFAVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAY-SGTLAAAFEGSLQ 116
             +  A  GTP D V +A   +  +K D++LSG+N+G NTS  V   SGTL AAF+ +L 
Sbjct: 60  GFRAIATSGTPSDTVYLATFGL-GRKYDIVLSGINLGDNTSLQVILSSGTLGAAFQAALL 118

Query: 117 GIRSFALSQAY-----TYENMIPWEVSETHAPRVLRQLLKTQIP-NTTLCNINFPRCSPE 170
           GI + A S           N    E+           +LK  +P    + ++NFPR    
Sbjct: 119 GIPALAYSAYLENWNELLNNKEAVEIMGAVVSSTASYVLKNGMPQGVDVISVNFPRRLGR 178

Query: 171 EVQKTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTP 230
            V+  +V    K  ++    +      + +Y L  G  L    E      ++   I++TP
Sbjct: 179 GVRAKLVK-AAKLRYAQQVVERVDPRGVRYYWLY-GRDLAPEPETDVYVVLKEGGIAITP 236

Query: 231 ITTDLTDYNSQQYI 244
           +T +L   ++ + +
Sbjct: 237 LTLNLNAVDAHREV 250


>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase,
           structural genomics, 3-D structure, mixed alpha/beta
           protein, NPPSFA; 1.50A {Aquifex aeolicus VF5}
          Length = 251

 Score =  177 bits (449), Expect = 3e-45
 Identities = 75/242 (30%), Positives = 119/242 (49%), Gaps = 5/242 (2%)

Query: 1   MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKK 60
              LL NDDG  S G+  L    +S+   + + AP+ + S + +SLT +  +  R I   
Sbjct: 2   PTFLLVNDDGYFSPGINALREALKSL-GRVVVVAPDRNLSGVGHSLTFTEPLKMRKIDTD 60

Query: 61  RF-AVHGTPVDCVVIALQ-KMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGI 118
            +  + GTP DCV +  +  + +KKPDL+LSG+N G N    + YSGT++ A EG + GI
Sbjct: 61  FYTVIDGTPADCVHLGYRVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGI 120

Query: 119 RSFALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPNTTLCNINFPRCSPEEVQKTVVT 178
            S A S        I +E        +++++L   IP  T  N+N P    EE++   VT
Sbjct: 121 PSIAFSAFGR--ENIMFEEIAKVCVDIVKKVLNEGIPEDTYLNVNIPNLRYEEIKGIKVT 178

Query: 179 AQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITTDLTDY 238
            QGK  +     +         Y +   +   +  E +D +A+ +  +SVTP+  DLT+Y
Sbjct: 179 RQGKRAYKERVFKYIDPYGKPFYWIAAEEFGWHAEEGTDYWAVLNGYVSVTPLHLDLTNY 238

Query: 239 NS 240
             
Sbjct: 239 KV 240


>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP,
           hydrolase; 2.05A {Thermus thermophilus HB8} PDB: 2e6b_A
           2e69_A 2e6e_A 2e6g_A 2e6h_A
          Length = 244

 Score =  162 bits (411), Expect = 6e-41
 Identities = 73/249 (29%), Positives = 110/249 (44%), Gaps = 18/249 (7%)

Query: 1   MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISK- 59
           MRIL+TNDDGI S GL  L   A    + +++ AP+ +QS   +++T++  +        
Sbjct: 1   MRILVTNDDGIYSPGLWALAEAASQFGE-VFVAAPDTEQSAAGHAITIAHPVRAYPHPSP 59

Query: 60  ------KRFAVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEG 113
                   + V GTP DCV + L        DL+LSGVN+G+N  + + +SGT+AAA +G
Sbjct: 60  LHAPHFPAYRVRGTPADCVALGLHLF--GPVDLVLSGVNLGSNLGHEIWHSGTVAAAKQG 117

Query: 114 SLQGIRSFALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPNTTLCNINFPRCSPEEVQ 173
            L G+ + A S     E      +      R L  LL+ +     L N+N P       +
Sbjct: 118 YLFGLSAAAFSVPLNGEVPDFAGLRP-WLLRTLETLLRLE--RPFLVNVNLPLR----PK 170

Query: 174 KTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITT 233
             + T Q    +               Y       LK   E +D +A+    +S TP+  
Sbjct: 171 GFLWTRQSVRAYEGVVIPGEDPMGRPFYWFA-PRPLKEAEEGTDRWAVAQGFVSATPLRL 229

Query: 234 DLTDYNSQQ 242
           DLTD    Q
Sbjct: 230 DLTDETRLQ 238


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 50.3 bits (120), Expect = 4e-07
 Identities = 32/206 (15%), Positives = 60/206 (29%), Gaps = 94/206 (45%)

Query: 4   LLTNDDGIK---SKGLITLENIARSISDDI--WICAPEM--DQSCLANSLTMSRNIACRT 56
           L+      +   ++GL            +I  W+  P    D+  L              
Sbjct: 198 LIRTTLDAEKVFTQGL------------NILEWLENPSNTPDKDYLL------------- 232

Query: 57  ISKKRFAVHGTPVDCVVIAL-Q--------KMSDKKP-DL--ILSGVNVGTNTSNHVAYS 104
                      P+ C +I + Q        K+    P +L   L G       + H   S
Sbjct: 233 ---------SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG------ATGH---S 274

Query: 105 -GTLAAAFEGSLQGIRSFALSQAYTYENMIPWEVSETHAPRVLRQL----LKTQ--IPNT 157
            G + A            A+++  +      WE       + +  L    ++     PNT
Sbjct: 275 QGLVTAV-----------AIAETDS------WESFFVSVRKAITVLFFIGVRCYEAYPNT 317

Query: 158 TLCNINFPRCSPEEVQKTVVTAQGKP 183
           +L         P  ++ ++   +G P
Sbjct: 318 SL--------PPSILEDSLENNEGVP 335


>1w0r_A Properdin, factor P; X-RAY scattering, analytical
           ultracentrifugation, complement, thrombospondin type I
           repeats, constrained modelling; NMR {Homo sapiens} PDB:
           1w0s_A
          Length = 442

 Score = 27.2 bits (58), Expect = 3.9
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 148 QLLKTQIPNTTLCNINFPRCSPEEVQKTVVTAQGKPCFSIDA 189
            +      N T      PRC   + QK +V  + +PC  + A
Sbjct: 393 MVEGQGEKNVTFWGRPLPRCEELQGQK-LVVEEKRPCLHVPA 433


>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
           structural genomics, PSI, protein structure initiative;
           1.80A {Mus musculus} SCOP: b.1.1.4
          Length = 122

 Score = 26.9 bits (59), Expect = 4.6
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 155 PNTTLCNINFPRCSPEEVQKTVVTA----QGKPCFSIDAKQISTNDNMSHYC 202
           PN T C  N     P EV   + T+    +  P F +  K I  +DN S+ C
Sbjct: 45  PNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSC 96


>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
           protein-CO-factor complex, structural genomics,
           structural genomics consortium, SGC; HET: NAD; 1.84A
           {Homo sapiens} SCOP: c.2.1.2
          Length = 246

 Score = 26.6 bits (58), Expect = 5.1
 Identities = 17/99 (17%), Positives = 26/99 (26%), Gaps = 15/99 (15%)

Query: 87  ILSGVNVGTNTSNHVAYSGTLAA--------AFEGSLQGIRSFALSQAYTYENMIPWEVS 138
           + S  +      N   YS T AA        A +   QGIR   +         +   + 
Sbjct: 131 MSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQ 190

Query: 139 ETHAPRVLRQLLKTQIPNTTLCNINFPRCSPEEVQKTVV 177
               P   R     +              + EE+    V
Sbjct: 191 ARGNPEEARNDFLKRQKTGRF-------ATAEEIAMLCV 222


>2ewf_A Nicking endonuclease N.BSPD6I; helix-turn-helix, beta-alpha-barrel,
           hydrolase; 1.84A {Bacillus SP}
          Length = 610

 Score = 26.1 bits (57), Expect = 7.0
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 146 LRQLLKTQIPNTTLCNINFPR 166
           L+QL+K Q P+       +P 
Sbjct: 116 LKQLVKWQYPSFQHKGKEYPE 136


>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
           thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
           1.65A {Thermus thermophilus} SCOP: c.2.1.2
          Length = 256

 Score = 26.0 bits (57), Expect = 8.6
 Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 19/121 (15%)

Query: 68  PVDCVVIALQKMSDKKPDLIL--SGVNVGTNTSNHVAYSGTLAA--------AFEGSLQG 117
           P+    +A ++M       I+  + V        + AY+ +           A + +   
Sbjct: 112 PMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLR 171

Query: 118 IRSFALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPNTTLCNINFPR-CSPEEVQKTV 176
           IR  A++        +   ++ +  P   R+  +              R   PEEV + V
Sbjct: 172 IRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHA--------LRRLGKPEEVAEAV 223

Query: 177 V 177
           +
Sbjct: 224 L 224


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.318    0.130    0.383 

Gapped
Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,946,757
Number of extensions: 81775
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 11
Length of query: 250
Length of database: 5,693,230
Length adjustment: 90
Effective length of query: 160
Effective length of database: 3,511,270
Effective search space: 561803200
Effective search space used: 561803200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)