RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|255764489|ref|YP_003065094.2| stationary phase survival protein SurE [Candidatus Liberibacter asiaticus str. psy62] (250 letters) >2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosphatase, mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A Length = 254 Score = 209 bits (533), Expect = 5e-55 Identities = 72/251 (28%), Positives = 122/251 (48%), Gaps = 6/251 (2%) Query: 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKK 60 MRILL+NDDG+ + G+ TL R +D + + AP+ ++S +NSLT+ ++ T Sbjct: 2 MRILLSNDDGVHAPGIQTLAKALREFAD-VQVVAPDRNRSGASNSLTLESSLRTFTFDNG 60 Query: 61 RFAVH-GTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIR 119 AV GTP DCV + + + +PD+++SG+N G N + V YSGT+AAA EG G Sbjct: 61 DIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFP 120 Query: 120 SFALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPNTTLCNINFPRCSPEEVQKTVVTA 179 + A+S ++ + +LR L + + + N+N P +V+ VT Sbjct: 121 ALAVSLNGYQ----HYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTR 176 Query: 180 QGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITTDLTDYN 239 G + + Y + + +D A+ +SVTP+ DLT ++ Sbjct: 177 CGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHS 236 Query: 240 SQQYISLSLET 250 + +S L++ Sbjct: 237 AHDVVSDWLDS 247 >1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A* Length = 247 Score = 191 bits (487), Expect = 9e-50 Identities = 68/244 (27%), Positives = 122/244 (50%), Gaps = 10/244 (4%) Query: 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISK- 59 MRIL+TNDDGI+SKG+I L + ++++ AP+ ++S +S+T+ + + + Sbjct: 1 MRILVTNDDGIQSKGIIVLAELLSEE-HEVFVVAPDKERSATGHSITIHVPLWMKKVFIS 59 Query: 60 ---KRFAVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQ 116 ++ GTP DCV +A + DK+ DLI+SGVN G N + +SGT++ A EG++ Sbjct: 60 ERVVAYSTTGTPADCVKLAYNVVMDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMM 119 Query: 117 GIRSFALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPNTTLCNINFPRCSPEEVQKTV 176 I S A+S A +E + L++ + + T+ NIN P E++ Sbjct: 120 NIPSIAISSA--NYESPDFEGAARFLIDFLKEFDFSLLDPFTMLNINVP---AGEIKGWR 174 Query: 177 VTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITTDLT 236 T Q + ++ ++ + +Y + + + D A++ +S+TPI LT Sbjct: 175 FTRQSRRRWNDYFEERVSPFGEKYYWMMGEVIEDDDRDDVDYKAVREGYVSITPIHPFLT 234 Query: 237 DYNS 240 + Sbjct: 235 NEQC 238 >1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/beta protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1 Length = 280 Score = 186 bits (473), Expect = 4e-48 Identities = 72/254 (28%), Positives = 118/254 (46%), Gaps = 14/254 (5%) Query: 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISK- 59 M+IL+TNDDG+ S GL L A S+ D+ + APE +S +T+ + + + Sbjct: 1 MKILVTNDDGVHSPGLRLLYQFALSLG-DVDVVAPESPKSATGLGITLHKPLRMYEVDLC 59 Query: 60 --KRFAVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAY-SGTLAAAFEGSLQ 116 + A GTP D V +A + +K D++LSG+N+G NTS V SGTL AAF+ +L Sbjct: 60 GFRAIATSGTPSDTVYLATFGL-GRKYDIVLSGINLGDNTSLQVILSSGTLGAAFQAALL 118 Query: 117 GIRSFALSQAY-----TYENMIPWEVSETHAPRVLRQLLKTQIP-NTTLCNINFPRCSPE 170 GI + A S N E+ +LK +P + ++NFPR Sbjct: 119 GIPALAYSAYLENWNELLNNKEAVEIMGAVVSSTASYVLKNGMPQGVDVISVNFPRRLGR 178 Query: 171 EVQKTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTP 230 V+ +V K ++ + + +Y L G L E ++ I++TP Sbjct: 179 GVRAKLVK-AAKLRYAQQVVERVDPRGVRYYWLY-GRDLAPEPETDVYVVLKEGGIAITP 236 Query: 231 ITTDLTDYNSQQYI 244 +T +L ++ + + Sbjct: 237 LTLNLNAVDAHREV 250 >2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} Length = 251 Score = 177 bits (449), Expect = 3e-45 Identities = 75/242 (30%), Positives = 119/242 (49%), Gaps = 5/242 (2%) Query: 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKK 60 LL NDDG S G+ L +S+ + + AP+ + S + +SLT + + R I Sbjct: 2 PTFLLVNDDGYFSPGINALREALKSL-GRVVVVAPDRNLSGVGHSLTFTEPLKMRKIDTD 60 Query: 61 RF-AVHGTPVDCVVIALQ-KMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGI 118 + + GTP DCV + + + +KKPDL+LSG+N G N + YSGT++ A EG + GI Sbjct: 61 FYTVIDGTPADCVHLGYRVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGI 120 Query: 119 RSFALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPNTTLCNINFPRCSPEEVQKTVVT 178 S A S I +E +++++L IP T N+N P EE++ VT Sbjct: 121 PSIAFSAFGR--ENIMFEEIAKVCVDIVKKVLNEGIPEDTYLNVNIPNLRYEEIKGIKVT 178 Query: 179 AQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITTDLTDY 238 QGK + + Y + + + E +D +A+ + +SVTP+ DLT+Y Sbjct: 179 RQGKRAYKERVFKYIDPYGKPFYWIAAEEFGWHAEEGTDYWAVLNGYVSVTPLHLDLTNY 238 Query: 239 NS 240 Sbjct: 239 KV 240 >2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP, hydrolase; 2.05A {Thermus thermophilus HB8} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A Length = 244 Score = 162 bits (411), Expect = 6e-41 Identities = 73/249 (29%), Positives = 110/249 (44%), Gaps = 18/249 (7%) Query: 1 MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISK- 59 MRIL+TNDDGI S GL L A + +++ AP+ +QS +++T++ + Sbjct: 1 MRILVTNDDGIYSPGLWALAEAASQFGE-VFVAAPDTEQSAAGHAITIAHPVRAYPHPSP 59 Query: 60 ------KRFAVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEG 113 + V GTP DCV + L DL+LSGVN+G+N + + +SGT+AAA +G Sbjct: 60 LHAPHFPAYRVRGTPADCVALGLHLF--GPVDLVLSGVNLGSNLGHEIWHSGTVAAAKQG 117 Query: 114 SLQGIRSFALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPNTTLCNINFPRCSPEEVQ 173 L G+ + A S E + R L LL+ + L N+N P + Sbjct: 118 YLFGLSAAAFSVPLNGEVPDFAGLRP-WLLRTLETLLRLE--RPFLVNVNLPLR----PK 170 Query: 174 KTVVTAQGKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITT 233 + T Q + Y LK E +D +A+ +S TP+ Sbjct: 171 GFLWTRQSVRAYEGVVIPGEDPMGRPFYWFA-PRPLKEAEEGTDRWAVAQGFVSATPLRL 229 Query: 234 DLTDYNSQQ 242 DLTD Q Sbjct: 230 DLTDETRLQ 238 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 50.3 bits (120), Expect = 4e-07 Identities = 32/206 (15%), Positives = 60/206 (29%), Gaps = 94/206 (45%) Query: 4 LLTNDDGIK---SKGLITLENIARSISDDI--WICAPEM--DQSCLANSLTMSRNIACRT 56 L+ + ++GL +I W+ P D+ L Sbjct: 198 LIRTTLDAEKVFTQGL------------NILEWLENPSNTPDKDYLL------------- 232 Query: 57 ISKKRFAVHGTPVDCVVIAL-Q--------KMSDKKP-DL--ILSGVNVGTNTSNHVAYS 104 P+ C +I + Q K+ P +L L G + H S Sbjct: 233 ---------SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG------ATGH---S 274 Query: 105 -GTLAAAFEGSLQGIRSFALSQAYTYENMIPWEVSETHAPRVLRQL----LKTQ--IPNT 157 G + A A+++ + WE + + L ++ PNT Sbjct: 275 QGLVTAV-----------AIAETDS------WESFFVSVRKAITVLFFIGVRCYEAYPNT 317 Query: 158 TLCNINFPRCSPEEVQKTVVTAQGKP 183 +L P ++ ++ +G P Sbjct: 318 SL--------PPSILEDSLENNEGVP 335 >1w0r_A Properdin, factor P; X-RAY scattering, analytical ultracentrifugation, complement, thrombospondin type I repeats, constrained modelling; NMR {Homo sapiens} PDB: 1w0s_A Length = 442 Score = 27.2 bits (58), Expect = 3.9 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%) Query: 148 QLLKTQIPNTTLCNINFPRCSPEEVQKTVVTAQGKPCFSIDA 189 + N T PRC + QK +V + +PC + A Sbjct: 393 MVEGQGEKNVTFWGRPLPRCEELQGQK-LVVEEKRPCLHVPA 433 >1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4 Length = 122 Score = 26.9 bits (59), Expect = 4.6 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%) Query: 155 PNTTLCNINFPRCSPEEVQKTVVTA----QGKPCFSIDAKQISTNDNMSHYC 202 PN T C N P EV + T+ + P F + K I +DN S+ C Sbjct: 45 PNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSC 96 >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural genomics consortium, SGC; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 246 Score = 26.6 bits (58), Expect = 5.1 Identities = 17/99 (17%), Positives = 26/99 (26%), Gaps = 15/99 (15%) Query: 87 ILSGVNVGTNTSNHVAYSGTLAA--------AFEGSLQGIRSFALSQAYTYENMIPWEVS 138 + S + N YS T AA A + QGIR + + + Sbjct: 131 MSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQ 190 Query: 139 ETHAPRVLRQLLKTQIPNTTLCNINFPRCSPEEVQKTVV 177 P R + + EE+ V Sbjct: 191 ARGNPEEARNDFLKRQKTGRF-------ATAEEIAMLCV 222 >2ewf_A Nicking endonuclease N.BSPD6I; helix-turn-helix, beta-alpha-barrel, hydrolase; 1.84A {Bacillus SP} Length = 610 Score = 26.1 bits (57), Expect = 7.0 Identities = 7/21 (33%), Positives = 11/21 (52%) Query: 146 LRQLLKTQIPNTTLCNINFPR 166 L+QL+K Q P+ +P Sbjct: 116 LKQLVKWQYPSFQHKGKEYPE 136 >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 Length = 256 Score = 26.0 bits (57), Expect = 8.6 Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 19/121 (15%) Query: 68 PVDCVVIALQKMSDKKPDLIL--SGVNVGTNTSNHVAYSGTLAA--------AFEGSLQG 117 P+ +A ++M I+ + V + AY+ + A + + Sbjct: 112 PMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLR 171 Query: 118 IRSFALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPNTTLCNINFPR-CSPEEVQKTV 176 IR A++ + ++ + P R+ + R PEEV + V Sbjct: 172 IRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHA--------LRRLGKPEEVAEAV 223 Query: 177 V 177 + Sbjct: 224 L 224 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.318 0.130 0.383 Gapped Lambda K H 0.267 0.0546 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,946,757 Number of extensions: 81775 Number of successful extensions: 213 Number of sequences better than 10.0: 1 Number of HSP's gapped: 193 Number of HSP's successfully gapped: 11 Length of query: 250 Length of database: 5,693,230 Length adjustment: 90 Effective length of query: 160 Effective length of database: 3,511,270 Effective search space: 561803200 Effective search space used: 561803200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.4 bits)