BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764489|ref|YP_003065094.2| stationary phase survival
protein SurE [Candidatus Liberibacter asiaticus str. psy62]
         (250 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764489|ref|YP_003065094.2| stationary phase survival protein SurE [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 250

 Score =  522 bits (1345), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 250/250 (100%), Positives = 250/250 (100%)

Query: 1   MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKK 60
           MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKK
Sbjct: 1   MRILLTNDDGIKSKGLITLENIARSISDDIWICAPEMDQSCLANSLTMSRNIACRTISKK 60

Query: 61  RFAVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRS 120
           RFAVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRS
Sbjct: 61  RFAVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHVAYSGTLAAAFEGSLQGIRS 120

Query: 121 FALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPNTTLCNINFPRCSPEEVQKTVVTAQ 180
           FALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPNTTLCNINFPRCSPEEVQKTVVTAQ
Sbjct: 121 FALSQAYTYENMIPWEVSETHAPRVLRQLLKTQIPNTTLCNINFPRCSPEEVQKTVVTAQ 180

Query: 181 GKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITTDLTDYNS 240
           GKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITTDLTDYNS
Sbjct: 181 GKPCFSIDAKQISTNDNMSHYCLTFGDHLKNLCEKSDAFAIQHNMISVTPITTDLTDYNS 240

Query: 241 QQYISLSLET 250
           QQYISLSLET
Sbjct: 241 QQYISLSLET 250


>gi|254780168|ref|YP_003064581.1| monooxygenase FAD-binding protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 380

 Score = 26.6 bits (57), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 12/51 (23%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 51  NIACRTISKKRFAVHGTPVDCVVIALQKMSDKKPDLILSGVNVGTNTSNHV 101
           +I  + +++   + H T  DC  I+  K++++KPDL++    + +N  +++
Sbjct: 111 HIQTQPLARLHLSTHITHPDCTQIS--KINNQKPDLLVGADGLNSNIRHYI 159


>gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 896

 Score = 25.4 bits (54), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 14/72 (19%)

Query: 75  ALQKMSDKKPDLILSGVNVGTNTSNHVAYSGT--------LAAAFEGSLQ------GIRS 120
           A++   D+ P ++ +GV  G  +S   A  GT        +A +FE   +      G+  
Sbjct: 760 AMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIP 819

Query: 121 FALSQAYTYENM 132
           FA  +  +++N+
Sbjct: 820 FAFGKGISWKNL 831


>gi|254780510|ref|YP_003064923.1| hypothetical protein CLIBASIA_01985 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 137

 Score = 23.5 bits (49), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 130 ENMIPWEVSETHAPRVLRQLLKTQIPNTTLCN 161
           E+ + + +SE     +LR+ LK  I +T L N
Sbjct: 24  ESNLAYTISERKKINILREKLKDSINSTALMN 55


>gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 408

 Score = 23.1 bits (48), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 188 DAKQISTNDNMSHYCLTFGDHLKN 211
           DA+++    N+SHY   + +  +N
Sbjct: 75  DARRVCDTINVSHYVFDYEERFRN 98


>gi|255764505|ref|YP_003065248.2| polysialic acid capsule expression protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 341

 Score = 22.3 bits (46), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 8   DDGIKSKGLITLENIARSISDDI 30
           D+G K KG+IT  +I R+   D+
Sbjct: 258 DEGQKLKGIITEGDIFRNFHKDL 280


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.130    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,279
Number of Sequences: 1233
Number of extensions: 5470
Number of successful extensions: 19
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 9
length of query: 250
length of database: 328,796
effective HSP length: 72
effective length of query: 178
effective length of database: 240,020
effective search space: 42723560
effective search space used: 42723560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 37 (18.9 bits)