255764490
dehydrogenase, E1 component
| GeneID in NCBI database: | 8209676 | Locus tag: | CLIBASIA_02795 |
| Protein GI in NCBI database: | 255764490 | Protein Accession: | YP_003065085.2 |
| Gene range: | -(595867, 596961) | Protein Length: | 364aa |
| Gene description: | dehydrogenase, E1 component | ||
| COG prediction: | [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit | ||
| KEGG prediction: | dehydrogenase, E1 component; K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] | ||
| SEED prediction: | Pyruvate dehydrogenase E1 component alpha subunit (EC 1.2.4.1) | ||
| Pathway involved in KEGG: | Glycolysis / Gluconeogenesis [PATH:las00010]
Citrate cycle (TCA cycle) [PATH:las00020] Pyruvate metabolism [PATH:las00620] Butanoate metabolism [PATH:las00650] Valine, leucine and isoleucine biosynthesis [PATH:las00290] | ||
| Subsystem involved in SEED: | Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
| Identity | Alignment graph | Length | Definition | E-value | |
| Target | 364 | dehydrogenase, E1 component [Candidatus Liberibacter as | |||
| 254781051 | 957 | alpha-ketoglutarate decarboxylase [Candidatus Libe | 5e-11 |
| >gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 957 | Back alignment |
|---|
Score = 60.5 bits (145), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 6/177 (3%)
Query: 178 RSDKICVVCFGDGA-ANQGQVYESFNIAALWNLNV---IYVIENNQYAMGTSVSRASAQT 233
RS + ++ GD A A QG V E+F ++ L V I++I NNQ T+ S A + T
Sbjct: 367 RSRVLPLIIHGDAAFAGQGIVSETFGLSGLSGYTVAGNIHLIINNQIGFTTNPSSARSCT 426
Query: 234 NFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPA 293
S S IP V+G D AV + AV++ ++I+++ YR GH+ D
Sbjct: 427 YASDISKSIGIPIFHVNGDDPEAVIRVVRMAVSFRMKFHKSVVIDIVCYRRFGHNEGDEP 486
Query: 294 NYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSD 350
++ +RS+ ++ L+ N+ S+ +L+ + N K + E+ +S+
Sbjct: 487 SFTQPMMYKTIRSHKSVLQLYADSLMKNQVISKQELQSLANNWHKYLE--AEYKESE 541
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Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 364 | dehydrogenase, E1 component [Candidatus Liberibacter as | |||
| 315122217 | 350 | dehydrogenase, E1 component [Candidatus Liberibacter so | 1 | 1e-167 | |
| 110633982 | 360 | dehydrogenase, E1 component [Mesorhizobium sp. BNC1] Le | 1 | 1e-142 | |
| 153009389 | 346 | dehydrogenase E1 component [Ochrobactrum anthropi ATCC | 1 | 1e-140 | |
| 222085876 | 347 | pyruvate dehydrogenase alpha subunit protein [Agrobacte | 1 | 1e-140 | |
| 239832018 | 366 | pyruvate dehydrogenase (acetyl-transferring) E1 compone | 1 | 1e-140 | |
| 260459502 | 345 | pyruvate dehydrogenase (acetyl-transferring) E1 compone | 1 | 1e-138 | |
| 319783388 | 345 | pyruvate dehydrogenase (acetyl-transferring) E1 compone | 1 | 1e-138 | |
| 227821846 | 348 | pyruvate dehydrogenase E1 component alpha subunit [Sino | 1 | 1e-137 | |
| 163760091 | 345 | putative pyruvate dehydrogenase subunit [Hoeflea photot | 1 | 1e-136 | |
| 241204524 | 348 | pyruvate dehydrogenase (acetyl-transferring) E1 compone | 1 | 1e-136 |
| >gi|315122217|ref|YP_004062706.1| dehydrogenase, E1 component [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 350 | Back alignment and organism information |
|---|
Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust.
Identities = 283/350 (80%), Positives = 322/350 (92%)
Query: 15 MALNPSVSAKRAATSSVDCVDIPFLEGFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYG 74
MALN S+S K SSVD +DI F + F+VSEF+K QELSAY+ MLLIRRFEEK GQLYG
Sbjct: 1 MALNTSISGKENGISSVDHMDISFFKEFKVSEFDKTQELSAYQKMLLIRRFEEKTGQLYG 60
Query: 75 MGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQG 134
MG++GGFCHLCIGQEAVI+GMKM++ EGDQMITAYR+HGHIL+CGV+ASK+MAELTGRQG
Sbjct: 61 MGLIGGFCHLCIGQEAVIIGMKMAMAEGDQMITAYRDHGHILSCGVEASKVMAELTGRQG 120
Query: 135 GISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQ 194
GISKGKGGSMHMFST+NGFYGGHGIVGAQVSLGTGIAFANKYR+SDK+CVVC GDGAANQ
Sbjct: 121 GISKGKGGSMHMFSTENGFYGGHGIVGAQVSLGTGIAFANKYRKSDKVCVVCLGDGAANQ 180
Query: 195 GQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDI 254
GQVYESFN+A LW L VIYVIENNQYAMGTSV+RASAQ N SKRG+SFNIPG+QVDGMD+
Sbjct: 181 GQVYESFNMAELWKLGVIYVIENNQYAMGTSVARASAQPNLSKRGISFNIPGIQVDGMDV 240
Query: 255 RAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREEINEMRSNHDPIEQV 314
R+VKA ++KA AYCRA+KGPII+EMLTYRYRGHSMSDPA YRTR+E+N+MR+NHDPIEQV
Sbjct: 241 RSVKAAIEKATAYCRANKGPIILEMLTYRYRGHSMSDPATYRTRDEVNDMRTNHDPIEQV 300
Query: 315 RKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDILI 364
R+RLL KWASE DLK IEM+VRKI+N+SVEFAQSD+EP+ +ELYSDILI
Sbjct: 301 RERLLQKKWASESDLKAIEMSVRKIVNDSVEFAQSDEEPNSSELYSDILI 350
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Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|110633982|ref|YP_674190.1| dehydrogenase, E1 component [Mesorhizobium sp. BNC1] Length = 360 | Back alignment and organism information |
|---|
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 232/347 (66%), Positives = 287/347 (82%), Gaps = 1/347 (0%)
Query: 19 PSVSAKRAATSSVDCV-DIPFLEGFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGM 77
P+ + R A ++ + D P L+ + EF KEQELS++R MLLIRRFEEKAGQLYGMG
Sbjct: 14 PARAGTRPAKKTIPMLNDTPVLDIPKPEEFTKEQELSSFREMLLIRRFEEKAGQLYGMGF 73
Query: 78 VGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGIS 137
+GGFCHL IGQEAV++GM+M++ EGDQ+IT YR+HGH+LA G+D +MAELTGR+ G S
Sbjct: 74 IGGFCHLYIGQEAVVIGMQMAMKEGDQVITGYRDHGHMLATGMDPRGVMAELTGRRSGYS 133
Query: 138 KGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQV 197
+GKGGSMHMFS + F+GGHGIVGAQV LGTGIA AN+YR +D + + FGDGAANQGQV
Sbjct: 134 RGKGGSMHMFSKEKNFFGGHGIVGAQVPLGTGIALANRYRGNDSVSLTYFGDGAANQGQV 193
Query: 198 YESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAV 257
YESFN+A+LW L VIY+IENN+YAMGT+VSR+SA+TNF+ RG+SF IPG+QVDGMD+RAV
Sbjct: 194 YESFNMASLWKLPVIYIIENNRYAMGTAVSRSSAETNFAHRGLSFKIPGVQVDGMDVRAV 253
Query: 258 KATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREEINEMRSNHDPIEQVRKR 317
KA D AV +CR+ KGPII+EM TYRYRGHSMSDPA YR+++E+ +MRS HDPIEQVRKR
Sbjct: 254 KAAGDMAVEWCRSGKGPIILEMQTYRYRGHSMSDPAKYRSKDEVQKMRSEHDPIEQVRKR 313
Query: 318 LLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDILI 364
LL KWASE DLK ++ VR I+ ++ +FAQSD EPDP+ELY+DILI
Sbjct: 314 LLDKKWASEDDLKAVDKEVRDIVADAADFAQSDPEPDPSELYTDILI 360
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Species: Chelativorans sp. BNC1 Genus: Chelativorans Family: Phyllobacteriaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|153009389|ref|YP_001370604.1| dehydrogenase E1 component [Ochrobactrum anthropi ATCC 49188] Length = 346 | Back alignment and organism information |
|---|
Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust.
Identities = 228/342 (66%), Positives = 285/342 (83%)
Query: 23 AKRAATSSVDCVDIPFLEGFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFC 82
AK++ S + + F+K+QEL AYR MLLIRRFEEKAGQLYGMG +GGFC
Sbjct: 5 AKKSPASKTQASSVTAPKAPAPVNFDKKQELDAYREMLLIRRFEEKAGQLYGMGFIGGFC 64
Query: 83 HLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGG 142
HL IGQEAV+VGM+M+L EGDQ+ITAYR+HGH+LA G+ A +MAELTGR+ G+SKGKGG
Sbjct: 65 HLYIGQEAVVVGMQMALKEGDQVITAYRDHGHMLAAGMSARGVMAELTGRRSGLSKGKGG 124
Query: 143 SMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFN 202
SMHMFS + FYGGHGIVGAQVSLGTG+AFAN+YR +D + + FGDGA+NQGQVYESFN
Sbjct: 125 SMHMFSKEKNFYGGHGIVGAQVSLGTGLAFANRYRDNDNVTLTYFGDGASNQGQVYESFN 184
Query: 203 IAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMD 262
+A+LW L V+Y+IENN+YAMGTSVSR+SA+T+FSKRG+SFNIPG+QVDGMD+RAVKA D
Sbjct: 185 MASLWKLPVVYIIENNRYAMGTSVSRSSAETDFSKRGLSFNIPGIQVDGMDVRAVKAAAD 244
Query: 263 KAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREEINEMRSNHDPIEQVRKRLLHNK 322
AV + R+ KGPII++M TYRYRGHSMSDPA YR++EE+ +MRS HDPIEQV++RL+
Sbjct: 245 LAVEWTRSGKGPIILDMQTYRYRGHSMSDPAKYRSKEEVQKMRSEHDPIEQVKQRLIDKG 304
Query: 323 WASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDILI 364
WA+E +LKEI+ +VR I+ +S +FAQ+D EPD +ELY+DIL+
Sbjct: 305 WATEEELKEIDKDVRDIVADSADFAQNDPEPDASELYTDILL 346
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Species: Ochrobactrum anthropi Genus: Ochrobactrum Family: Brucellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|222085876|ref|YP_002544407.1| pyruvate dehydrogenase alpha subunit protein [Agrobacterium radiobacter K84] Length = 347 | Back alignment and organism information |
|---|
Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust.
Identities = 235/343 (68%), Positives = 281/343 (81%), Gaps = 2/343 (0%)
Query: 24 KRAATSSVDCVDIPFLE--GFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGF 81
K A+ SS P E G ++EF+++ ELSAYR MLLIRRFEEKAGQLYGMG +GGF
Sbjct: 5 KSASVSSRKTASRPAKETNGGAIAEFDRDAELSAYREMLLIRRFEEKAGQLYGMGFIGGF 64
Query: 82 CHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKG 141
CHL IGQEAV+VGM+M+L +GDQ+IT YR+HGH+LA G+ A +MAELTGR+GG S+GKG
Sbjct: 65 CHLYIGQEAVVVGMQMALKDGDQVITGYRDHGHMLAAGMSARGVMAELTGRKGGYSRGKG 124
Query: 142 GSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESF 201
GSMHMFS + FYGGHGIVGAQVSLGTG+ FAN YR +D + V FGDGAANQGQVYESF
Sbjct: 125 GSMHMFSKEKNFYGGHGIVGAQVSLGTGLGFANWYRGNDSVSVAYFGDGAANQGQVYESF 184
Query: 202 NIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATM 261
N+A LW L VIYVIENN+YAMGTS +RA+AQ +FSKRG SF IPG+QVD MD+RAVKA
Sbjct: 185 NMAQLWKLPVIYVIENNRYAMGTSTARATAQPDFSKRGASFGIPGIQVDAMDVRAVKAAA 244
Query: 262 DKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREEINEMRSNHDPIEQVRKRLLHN 321
D+AV YCR+ KGPII+EMLTYRYRGHSMSDPA YR+++E+ +MRS HDPIEQVR RLL
Sbjct: 245 DEAVEYCRSGKGPIILEMLTYRYRGHSMSDPAKYRSKDEVQKMRSEHDPIEQVRVRLLDK 304
Query: 322 KWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDILI 364
WASE DLK I+ +VR I+ +S +FAQ+D EPD +ELY+DIL+
Sbjct: 305 GWASEDDLKVIDKDVRDIVADSADFAQADPEPDASELYTDILL 347
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Species: Agrobacterium tumefaciens Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|239832018|ref|ZP_04680347.1| pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [Ochrobactrum intermedium LMG 3301] Length = 366 | Back alignment and organism information |
|---|
Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust.
Identities = 230/342 (67%), Positives = 285/342 (83%), Gaps = 5/342 (1%)
Query: 23 AKRAATSSVDCVDIPFLEGFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFC 82
A +A SSV P + F+K+QEL AYR MLLIRRFEEKAGQLYGMG +GGFC
Sbjct: 30 ANKAQASSVTAPKAP-----APANFDKKQELDAYREMLLIRRFEEKAGQLYGMGFIGGFC 84
Query: 83 HLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGG 142
HL IGQEAV+VGM+M+L EGDQ+ITAYR+HGH+LA G+ A +MAELTGR+ G+SKGKGG
Sbjct: 85 HLYIGQEAVVVGMQMALKEGDQVITAYRDHGHMLAAGMSARGVMAELTGRRSGLSKGKGG 144
Query: 143 SMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFN 202
SMHMFS + FYGGHGIVGAQVSLGTG+AFAN+YR +D + + FGDGA+NQGQVYESFN
Sbjct: 145 SMHMFSKEKHFYGGHGIVGAQVSLGTGLAFANRYRDNDNVTLTYFGDGASNQGQVYESFN 204
Query: 203 IAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMD 262
+A+LW L V+Y+IENN+YAMGTSVSR+SA+T+FSKRG+SFNIPG+QVDGMD+RAVKA D
Sbjct: 205 MASLWKLPVVYIIENNRYAMGTSVSRSSAETDFSKRGLSFNIPGIQVDGMDVRAVKAAAD 264
Query: 263 KAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREEINEMRSNHDPIEQVRKRLLHNK 322
AV + R+ KGPII++M TYRYRGHSMSDPA YR++EE+ +MRS HDPIEQV++R++
Sbjct: 265 LAVEWTRSGKGPIILDMQTYRYRGHSMSDPAKYRSKEEVQKMRSEHDPIEQVKQRVIEKG 324
Query: 323 WASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDILI 364
WA+E +LKEI+ VR I+ +S +FAQ+D EPD +ELY+DIL+
Sbjct: 325 WATEEELKEIDKEVRDIVADSADFAQNDPEPDASELYTDILL 366
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Species: Ochrobactrum intermedium Genus: Ochrobactrum Family: Brucellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|260459502|ref|ZP_05807757.1| pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [Mesorhizobium opportunistum WSM2075] Length = 345 | Back alignment and organism information |
|---|
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 225/344 (65%), Positives = 281/344 (81%)
Query: 21 VSAKRAATSSVDCVDIPFLEGFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGG 80
+A R A + L + +EF K++EL+AYR MLLIRRFEEKAGQLYGMG +GG
Sbjct: 2 ATAARKAPAKSKSDGKSVLSAPKPAEFTKDEELAAYRHMLLIRRFEEKAGQLYGMGFIGG 61
Query: 81 FCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGK 140
FCHL IGQEAV+ GMKM+L +GDQMITAYR+HGH+LA + +MAELTGR+GG+S+GK
Sbjct: 62 FCHLYIGQEAVVTGMKMALIDGDQMITAYRDHGHMLAMELSPRGVMAELTGRRGGLSRGK 121
Query: 141 GGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYES 200
GGSMHMFS + FYGGHGIVGAQVSLGTG+AFAN+YR ++ + + FGDGAANQGQVYES
Sbjct: 122 GGSMHMFSKEKHFYGGHGIVGAQVSLGTGLAFANRYRENNNVSLTYFGDGAANQGQVYES 181
Query: 201 FNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKAT 260
FN+A+LW L VIY+IENN+YAMGTSVSR+SA+TNFS RG SF IPG+QVDGMD+RAVK+
Sbjct: 182 FNMASLWKLPVIYIIENNRYAMGTSVSRSSAETNFSHRGASFKIPGIQVDGMDVRAVKSA 241
Query: 261 MDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREEINEMRSNHDPIEQVRKRLLH 320
D+A +CRA GPII+EM TYRYRGHSMSDPA YR++EE+ +MRS+HDPIEQV+ RL
Sbjct: 242 GDQATEWCRAGNGPIILEMQTYRYRGHSMSDPAKYRSKEEVQKMRSDHDPIEQVKARLTQ 301
Query: 321 NKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDILI 364
KWA+E +LK I+ VR ++ ++ EFAQ+D EPDP+EL++DI++
Sbjct: 302 KKWATEDELKAIDKEVRDVVADAAEFAQNDAEPDPSELWTDIVL 345
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Species: Mesorhizobium opportunistum Genus: Mesorhizobium Family: Phyllobacteriaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|319783388|ref|YP_004142864.1| pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 345 | Back alignment and organism information |
|---|
Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust.
Identities = 223/319 (69%), Positives = 274/319 (85%)
Query: 46 EFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQM 105
EF K++EL+AYR MLLIRRFEEKAGQLYGMG +GGFCHL IGQEAV+ GMKM+L +GDQM
Sbjct: 27 EFTKDEELAAYRHMLLIRRFEEKAGQLYGMGFIGGFCHLYIGQEAVVTGMKMALIDGDQM 86
Query: 106 ITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVS 165
ITAYR+HGH+LA + +MAELTGR+GG+S+GKGGSMHMFS + FYGGHGIVGAQVS
Sbjct: 87 ITAYRDHGHMLAMELSPRGVMAELTGRRGGLSRGKGGSMHMFSKEKHFYGGHGIVGAQVS 146
Query: 166 LGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTS 225
LGTG+AFAN+YR ++ + + FGDGAANQGQVYESFN+A+LW L VIY+IENN+YAMGTS
Sbjct: 147 LGTGLAFANRYRDNNNVSLTYFGDGAANQGQVYESFNMASLWKLPVIYIIENNRYAMGTS 206
Query: 226 VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYR 285
VSR+SA+TNFS RG SF IPG+QVDGMD+RAVKA D+A +CRA GPII+EM TYRYR
Sbjct: 207 VSRSSAETNFSHRGASFKIPGIQVDGMDVRAVKAAGDQATEWCRAGNGPIILEMQTYRYR 266
Query: 286 GHSMSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVE 345
GHSMSDPA YR++EE+ +MRS+HDPIEQV+ RL+ KWA+E +LK I+ VR I+ ++ E
Sbjct: 267 GHSMSDPAKYRSKEEVQKMRSDHDPIEQVKARLIEKKWATEDELKTIDKEVRDIVADAAE 326
Query: 346 FAQSDKEPDPAELYSDILI 364
FAQ+D EPDP+EL++DI++
Sbjct: 327 FAQNDAEPDPSELWTDIVL 345
|
Species: Mesorhizobium ciceri Genus: Mesorhizobium Family: Phyllobacteriaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|227821846|ref|YP_002825816.1| pyruvate dehydrogenase E1 component alpha subunit [Sinorhizobium fredii NGR234] Length = 348 | Back alignment and organism information |
|---|
Score = 491 bits (1265), Expect = e-137, Method: Compositional matrix adjust.
Identities = 240/347 (69%), Positives = 291/347 (83%), Gaps = 8/347 (2%)
Query: 20 SVSAKRAA--TSSVDCVDIPFLEGFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGM 77
SVS+++AA TS D G ++EF+KE EL AYR MLLIRRFEEKAGQLYGMG
Sbjct: 8 SVSSRKAAAKTSKKD------FAGGTIAEFSKEDELKAYREMLLIRRFEEKAGQLYGMGF 61
Query: 78 VGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGIS 137
+GGFCHL IGQEAV+VGM+++L EGDQ+IT YR+HGH+LACG+ A +MAELTGR+GG+S
Sbjct: 62 IGGFCHLYIGQEAVVVGMQLALKEGDQVITGYRDHGHMLACGMSARGVMAELTGRRGGLS 121
Query: 138 KGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQV 197
KGKGGSMHMFS + FYGGHGIVGAQVSLGTG+AFAN+YR +D + + FGDGAANQGQV
Sbjct: 122 KGKGGSMHMFSKEKHFYGGHGIVGAQVSLGTGLAFANRYRGNDNVSLAYFGDGAANQGQV 181
Query: 198 YESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAV 257
YESFN+AALW L VIY++ENN+YAMGTSVSRASAQT+FS+RG SF IPG QVDGMD+RAV
Sbjct: 182 YESFNMAALWKLPVIYIVENNRYAMGTSVSRASAQTDFSQRGASFGIPGYQVDGMDVRAV 241
Query: 258 KATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREEINEMRSNHDPIEQVRKR 317
KA D+AV +CR+ KGPII+EMLTYRYRGHSMSDPA YR+++E+ +MRS HDPIEQV+ R
Sbjct: 242 KAAADEAVEHCRSGKGPIILEMLTYRYRGHSMSDPAKYRSKDEVQKMRSEHDPIEQVKAR 301
Query: 318 LLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDILI 364
L+ WASE +LK+++ VR I+ +S +FAQSD EPD AELY+DIL+
Sbjct: 302 LVEKGWASEDELKQVDKEVRDIVADSADFAQSDPEPDVAELYTDILL 348
|
Species: Sinorhizobium fredii Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|163760091|ref|ZP_02167174.1| putative pyruvate dehydrogenase subunit [Hoeflea phototrophica DFL-43] Length = 345 | Back alignment and organism information |
|---|
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 221/321 (68%), Positives = 275/321 (85%)
Query: 44 VSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGD 103
++EF+K+ EL AYR ML+IRRFEEKAGQLYGMG +GGFCHL IGQEAV+VGM+MSL +GD
Sbjct: 25 ITEFSKDAELEAYREMLMIRRFEEKAGQLYGMGFIGGFCHLYIGQEAVVVGMQMSLKDGD 84
Query: 104 QMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQ 163
Q+IT YR+HGH+LA G++A +MAELTGR+GG S+GKGGSMHMFS + FYGGHGIVG Q
Sbjct: 85 QVITGYRDHGHMLATGMEARGVMAELTGRRGGYSRGKGGSMHMFSKEKNFYGGHGIVGGQ 144
Query: 164 VSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMG 223
VSLGTG+AFAN+YR +D + + FGDGAANQGQVYESFN+AALW L V+Y++ENN+YAMG
Sbjct: 145 VSLGTGLAFANRYRGNDNVSLTYFGDGAANQGQVYESFNMAALWKLPVVYIVENNRYAMG 204
Query: 224 TSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283
TS+ R+SAQ+NFS RG SF IPG QVDGMD+RAV A ++AVA+CRA KGPII+EMLTYR
Sbjct: 205 TSIERSSAQSNFSLRGNSFGIPGHQVDGMDVRAVHAAGEEAVAHCRAGKGPIILEMLTYR 264
Query: 284 YRGHSMSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNS 343
YRGHSMSDPA YRT++E+ +MR+ HDPIEQV+ R+L K ASE DLK I+ N+R ++ +S
Sbjct: 265 YRGHSMSDPAKYRTKDEVQKMRAEHDPIEQVKARILEMKHASEDDLKAIDKNIRDVVADS 324
Query: 344 VEFAQSDKEPDPAELYSDILI 364
+FAQ++ EPD +ELY+DIL+
Sbjct: 325 ADFAQANPEPDASELYTDILL 345
|
Species: Hoeflea phototrophica Genus: Hoeflea Family: Phyllobacteriaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|241204524|ref|YP_002975620.1| pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 348 | Back alignment and organism information |
|---|
Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust.
Identities = 219/324 (67%), Positives = 275/324 (84%)
Query: 41 GFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLT 100
G V++F++ +EL AYR MLLIRRFEEKAGQLYGMG +GGFCHL IGQEAV+VGM+M+
Sbjct: 25 GGPVADFDRNEELKAYREMLLIRRFEEKAGQLYGMGFIGGFCHLYIGQEAVVVGMQMAQK 84
Query: 101 EGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIV 160
+GDQ+ITAYR+HGH+LA G++A +MAELTGR+ G S GKGGSMHMFS + FYGGHGIV
Sbjct: 85 DGDQVITAYRDHGHMLATGMEARGVMAELTGRRSGYSHGKGGSMHMFSKEKHFYGGHGIV 144
Query: 161 GAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQY 220
GAQVSLGTG+AFAN+YR +D + + FGDGAANQGQVYESFN+AALW L ++Y++ENN+Y
Sbjct: 145 GAQVSLGTGLAFANRYRGNDNVSIAYFGDGAANQGQVYESFNMAALWKLPIVYIVENNRY 204
Query: 221 AMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEML 280
AMGTS +RA+AQ+N+S RG F IPG+QVDGMD+RAVKA D+A+ +CR+ KGPII+EML
Sbjct: 205 AMGTSTARATAQSNYSLRGSGFGIPGIQVDGMDVRAVKAAADEALEHCRSGKGPIILEML 264
Query: 281 TYRYRGHSMSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKII 340
TYRYRGHSMSDPA YR+++E+ +MRS HDPIEQV+ RL+ WASE DLK I+ +VR I+
Sbjct: 265 TYRYRGHSMSDPAKYRSKDEVQKMRSEHDPIEQVKARLVEKGWASEDDLKAIDKDVRDIV 324
Query: 341 NNSVEFAQSDKEPDPAELYSDILI 364
+S +FAQ+D EPD +ELY+DIL+
Sbjct: 325 ADSADFAQADPEPDASELYTDILL 348
|
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 364 | dehydrogenase, E1 component [Candidatus Liberibacter as | ||
| TIGR03182 | 315 | TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 com | 1e-155 | |
| COG1071 | 358 | COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase co | 1e-113 | |
| cd02000 | 293 | cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate ( | 1e-108 | |
| PLN02269 | 362 | PLN02269, PLN02269, Pyruvate dehydrogenase E1 component | 1e-107 | |
| pfam00676 | 303 | pfam00676, E1_dh, Dehydrogenase E1 component | 1e-101 | |
| CHL00149 | 341 | CHL00149, odpA, pyruvate dehydrogenase E1 component alp | 1e-76 | |
| PLN02374 | 433 | PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-tran | 4e-74 | |
| TIGR03181 | 341 | TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 com | 3e-65 | |
| KOG0225 | 394 | KOG0225, KOG0225, KOG0225, Pyruvate dehydrogenase E1, a | 1e-114 | |
| KOG1182 | 432 | KOG1182, KOG1182, KOG1182, Branched chain alpha-keto ac | 2e-37 | |
| COG0567 | 906 | COG0567, SucA, 2-oxoglutarate dehydrogenase complex, de | 6e-13 | |
| KOG0451 | 913 | KOG0451, KOG0451, KOG0451, Predicted 2-oxoglutarate deh | 7e-12 | |
| KOG0450 | 1017 | KOG0450, KOG0450, KOG0450, 2-oxoglutarate dehydrogenase | 2e-10 | |
| TIGR00239 | 929 | TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 | 1e-09 | |
| PRK09404 | 924 | PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 compone | 0.001 | |
| cd02016 | 265 | cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) | 2e-12 | |
| cd02012 | 255 | cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, T | 5e-11 | |
| cd02007 | 195 | cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, | 5e-08 | |
| COG3959 | 243 | COG3959, COG3959, Transketolase, N-terminal subunit [Ca | 9e-08 | |
| KOG0523 | 632 | KOG0523, KOG0523, KOG0523, Transketolase [Carbohydrate | 3e-07 | |
| cd00568 | 168 | cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzy | 4e-06 | |
| pfam02775 | 150 | pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, | 1e-05 | |
| PLN02234 | 641 | PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate synt | 1e-05 | |
| PRK12571 | 641 | PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synt | 0.002 | |
| PRK07586 | 514 | PRK07586, PRK07586, hypothetical protein; Validated | 0.004 | |
| PRK12270 | 1228 | PRK12270, kgd, alpha-ketoglutarate decarboxylase; Revie | 2e-07 | |
| PLN02582 | 677 | PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate synt | 0.001 | |
| COG1154 | 627 | COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenz | 0.003 | |
| PRK05444 | 580 | PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synt | 0.002 |
| >gnl|CDD|163176 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Score = 542 bits (1399), Expect = e-155
Identities = 196/315 (62%), Positives = 237/315 (75%), Gaps = 1/315 (0%)
Query: 49 KEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITA 108
KE+ L YR MLLIRRFEEKAGQLYGMG +GGFCHL IGQEAV VG+ +L D +IT+
Sbjct: 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITS 60
Query: 109 YREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGT 168
YR+HGH LA GV ++MAELTGR G SKGKGGSMHMF + FYGGHGIVGAQV L T
Sbjct: 61 YRDHGHALARGVPPKEVMAELTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLAT 120
Query: 169 GIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSR 228
G+AFANKYR +D + FGDGAANQGQ YESFN+AALW L VI+VIENN YAMGTSV R
Sbjct: 121 GLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMGTSVER 180
Query: 229 ASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHS 288
+S+ T+ KRG SF IPG +VDGMD+ AV+ +AV R+ KGPI++EM TYR+RGHS
Sbjct: 181 SSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHS 240
Query: 289 MSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQ 348
MSDPA YR++EE+ E R DPIE+++ RL+ ASE +LKEI+ VR + +VEFA+
Sbjct: 241 MSDPAKYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFAE 299
Query: 349 SDKEPDPAELYSDIL 363
+ EP ELY+D+
Sbjct: 300 NSPEPPVEELYTDVY 314
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. Length = 315 |
| >gnl|CDD|31269 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 403 bits (1036), Expect = e-113
Identities = 152/324 (46%), Positives = 203/324 (62%), Gaps = 4/324 (1%)
Query: 43 EVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEG 102
+ +KE+ L YRLMLLIRRF+EK QL G +GGF HL IGQEAV VG +L G
Sbjct: 20 PNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPG 79
Query: 103 -DQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVG 161
D + YR+HGH+LA GV +IMAEL G+ G KG+GGSMH + GF GG GIVG
Sbjct: 80 EDWIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVG 139
Query: 162 AQVSLGTGIAFANKYRRSDKICVVC-FGDGAANQGQVYESFNIAALWNLNVIYVIENNQY 220
Q+ L G A A KYR + V FGDGA NQG +E+ N AA+W L V++VIENNQY
Sbjct: 140 TQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQY 199
Query: 221 AMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEML 280
A+ SR +A + R ++ IPG++VDG D+ AV +AV RA +GP +IE +
Sbjct: 200 AISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAV 259
Query: 281 TYRYRGHSMSDPAN-YRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKI 339
TYRY GHS SD + YR++EE+ E + DPI ++RK L+ SE +L+ IE +
Sbjct: 260 TYRYGGHSTSDDPSKYRSKEEVEEWKK-RDPIVRLRKYLIEAGILSEEELEAIEAEAKAE 318
Query: 340 INNSVEFAQSDKEPDPAELYSDIL 363
++ +VEFA++ PD +EL+ D+
Sbjct: 319 VDEAVEFAEASPYPDVSELFEDVY 342
|
Length = 358 |
| >gnl|CDD|48163 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) | Back alignment and domain information |
|---|
Score = 386 bits (992), Expect = e-108
Identities = 143/294 (48%), Positives = 192/294 (65%), Gaps = 2/294 (0%)
Query: 55 AYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGH 114
YR M+LIRRF+E+ +LY G +GGF HL IGQEAV VG+ +L GD + YR+HGH
Sbjct: 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGH 60
Query: 115 ILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFAN 174
LA GVD +++AEL G++ G KG+GGSMH+ + F+GG+GIVG QV L G A A
Sbjct: 61 ALARGVDLKEMLAELFGKETGPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALAL 120
Query: 175 KYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTN 234
KYR D++ V FGDGA N+G +E+ N AALW L VI+V ENN YA+ T SR +A T+
Sbjct: 121 KYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAISTPTSRQTAGTS 180
Query: 235 FSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMS-DPA 293
+ R ++ IPG++VDG D+ AV +AV RA GP +IE +TYR GHS S DP+
Sbjct: 181 IADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPS 240
Query: 294 NYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFA 347
YRT+EE+ E + DPI ++RK L+ +E +L IE V+ + +VEFA
Sbjct: 241 RYRTKEEVEEWKK-RDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293
|
PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).. Length = 293 |
| >gnl|CDD|177910 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit alpha | Back alignment and domain information |
|---|
Score = 383 bits (986), Expect = e-107
Identities = 158/318 (49%), Positives = 219/318 (68%), Gaps = 4/318 (1%)
Query: 46 EFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQM 105
E +K++ + +R M L+RR E A LY ++ GFCHL GQEAV VGM+ ++T+ D +
Sbjct: 26 ETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAI 85
Query: 106 ITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVS 165
ITAYR+H L G ++ AEL GR+ G S+GKGGSMH + FYGGHGIVGAQV
Sbjct: 86 ITAYRDHCTHLGRGGTVLEVFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVP 145
Query: 166 LGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTS 225
LG G+AFA KY + + + +GDGAANQGQ++E+ NIAALW+L VI+V ENN Y MGT+
Sbjct: 146 LGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNHYGMGTA 205
Query: 226 VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYR 285
RA+ + KRG +PG++VDGMD+ AVK A + + GPI++EM TYRY
Sbjct: 206 EWRAAKSPAYYKRGDY--VPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRYH 262
Query: 286 GHSMSDP-ANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSV 344
GHSMSDP + YRTR+EI+ +R DPIE+VRK LL ++ A+E +LK+IE +RK ++++V
Sbjct: 263 GHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDDAV 322
Query: 345 EFAQSDKEPDPAELYSDI 362
A+ PDP+EL++++
Sbjct: 323 AKAKESPMPDPSELFTNV 340
|
Length = 362 |
| >gnl|CDD|144320 pfam00676, E1_dh, Dehydrogenase E1 component | Back alignment and domain information |
|---|
Score = 362 bits (932), Expect = e-101
Identities = 154/300 (51%), Positives = 199/300 (66%), Gaps = 3/300 (1%)
Query: 59 MLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILAC 118
M+ +RR E+ LY GFCHL GQEA+ VG+ +L GD +I YR+HG++LA
Sbjct: 3 MMTLRRMEDARMALYQRKGRRGFCHLYAGQEALQVGIAAALNPGDYVIPTYRDHGNLLAR 62
Query: 119 GVDASKIMAELTGRQGGISKGKGGSMHMFS--TKNGFYGGHGIVGAQVSLGTGIAFANKY 176
GV ++MAELTG + G SKGKGGSMH + N FYGG+GIVGAQV LG GIA A KY
Sbjct: 63 GVSLEQVMAELTGNEAGCSKGKGGSMHGYYAPKNNRFYGGNGIVGAQVPLGAGIALAAKY 122
Query: 177 RRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFS 236
R ++ + FGDGA NQGQ +E+ N AALW L VI+V ENNQYA+ T R+SA T ++
Sbjct: 123 RGKKEVAITLFGDGATNQGQFFEALNFAALWKLPVIFVCENNQYAISTPAERSSASTYYA 182
Query: 237 KRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPAN-Y 295
R + IPG++VDGMD AV + A R GP +IE++TYRY GHSMSD + Y
Sbjct: 183 DRARGYGIPGIRVDGMDPLAVYQAVKFAAERARTGNGPTLIELVTYRYGGHSMSDDPSTY 242
Query: 296 RTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDP 355
RTREE+ E+R DPI++++K L+ SE +LKEIE VRK I +V+ A+SD EP+P
Sbjct: 243 RTREEVEEVRKKKDPIKRLKKHLVSRGVVSEEELKEIEKEVRKEIEEAVKKAESDPEPNP 302
|
This family uses thiamine pyrophosphate as a cofactor. This family includes pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate dehydrogenase. Length = 303 |
| >gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit; Reviewed | Back alignment and domain information |
|---|
Score = 282 bits (723), Expect = 1e-76
Identities = 127/319 (39%), Positives = 190/319 (59%), Gaps = 8/319 (2%)
Query: 48 NKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMIT 107
N L Y MLL R FE+ Q+Y G + GF HL GQEAV G+ L E D + +
Sbjct: 18 NSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCS 77
Query: 108 AYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLG 167
YR+H H L+ GV +MAEL G++ G S+G+GGSMH+FS + F GG +G + +
Sbjct: 78 TYRDHVHALSKGVPPKNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIA 137
Query: 168 TGIAFANKYRRS------DKICVVCF-GDGAANQGQVYESFNIAALWNLNVIYVIENNQY 220
G AF + YR+ CF GDG N GQ +E N+A LW L +I+V+ENNQ+
Sbjct: 138 LGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQW 197
Query: 221 AMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEML 280
A+G + R+++ K+ +F +PG++VDGMD+ AV+ +AV R GP +IE L
Sbjct: 198 AIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTLIEAL 257
Query: 281 TYRYRGHSMSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKII 340
TYR+RGHS++DP R+++E E DPI++++ ++ N+ AS+ +L +I+ V+ I
Sbjct: 258 TYRFRGHSLADPDELRSKQE-KEAWVARDPIKKLKSYIIDNELASQKELNKIQREVKIEI 316
Query: 341 NNSVEFAQSDKEPDPAELY 359
+V+FA S EP+ ++L
Sbjct: 317 EQAVQFAISSPEPNISDLK 335
|
Length = 341 |
| >gnl|CDD|178002 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring) | Back alignment and domain information |
|---|
Score = 273 bits (700), Expect = 4e-74
Identities = 125/322 (38%), Positives = 192/322 (59%), Gaps = 8/322 (2%)
Query: 49 KEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITA 108
+E+ L Y M+L R FE+ Q+Y G + GF HL GQEAV G L + D +++
Sbjct: 85 REEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVST 144
Query: 109 YREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGT 168
YR+H H L+ GV A +M+EL G+ G +G+GGSMHMFS ++ GG +G + + T
Sbjct: 145 YRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVAT 204
Query: 169 GIAFANKYRRS-------DKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYA 221
G AF++KYRR D + + FGDG N GQ +E N+AALW L +++V+ENN +A
Sbjct: 205 GAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA 264
Query: 222 MGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281
+G S RA++ K+G +F +PG+ VDGMD+ V+ +A+ R +GP ++E T
Sbjct: 265 IGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 324
Query: 282 YRYRGHSMSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIIN 341
YR+RGHS++DP R E + DPI ++K L+ N A+E +LK IE + +++
Sbjct: 325 YRFRGHSLADPDELRDPAEKAHYAA-RDPIAALKKYLIENGLATEAELKAIEKKIDEVVE 383
Query: 342 NSVEFAQSDKEPDPAELYSDIL 363
++VEFA + P ++L ++
Sbjct: 384 DAVEFADASPLPPRSQLLENVF 405
|
Length = 433 |
| >gnl|CDD|132225 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Score = 244 bits (625), Expect = 3e-65
Identities = 99/313 (31%), Positives = 163/313 (52%), Gaps = 12/313 (3%)
Query: 48 NKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMIT 107
+ E+ + YR M+L RRF+ KA L G +G + +GQEA VG ++L + D +
Sbjct: 22 SDEELVELYRDMVLTRRFDTKALALQRQGRLGTYA-PNLGQEAAQVGSALALRKDDWVFP 80
Query: 108 AYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLG 167
+YR+H +LA GV +I+ G + G +G ++ + +G Q
Sbjct: 81 SYRDHAAMLARGVPLVEILLYWRGDERGSWDPEGVNILPPNI---------PIGTQYLHA 131
Query: 168 TGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVS 227
G+A+A K R D + V FGDG ++G YE+ N A ++ V++ ++NNQ+A+ S
Sbjct: 132 AGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRS 191
Query: 228 RASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGH 287
+ +A +++ +++ IPG+QVDG D+ AV A +AV R+ GP +IE +TYR H
Sbjct: 192 KQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPH 251
Query: 288 SMSD-PANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEF 346
+ +D P YRT+EE E R DPI ++RK L E + +E + +V
Sbjct: 252 TTADDPTRYRTKEEEEEWRK-KDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAE 310
Query: 347 AQSDKEPDPAELY 359
A + P +++
Sbjct: 311 ALALPPPPVDDIF 323
|
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. Length = 341 |
| >gnl|CDD|35446 KOG0225, KOG0225, KOG0225, Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 408 bits (1049), Expect = e-114
Identities = 175/320 (54%), Positives = 222/320 (69%), Gaps = 5/320 (1%)
Query: 46 EFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQM 105
E KE+ L YR M IRR E A QLY + GFCHL GQEAV VGM+ ++T+ D +
Sbjct: 55 ELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITKSDSI 114
Query: 106 ITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVS 165
IT+YR HG GV +++AEL GRQ G SKGKGGSMHM++ FYGG+GIVGAQ+
Sbjct: 115 ITSYRCHGWTYLRGVSVREVLAELMGRQAGCSKGKGGSMHMYA--KNFYGGNGIVGAQIP 172
Query: 166 LGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTS 225
LG GIAFA KY R D +C +GDGAANQGQV+E+FN+AALW L VI+V ENN Y MGTS
Sbjct: 173 LGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYGMGTS 232
Query: 226 VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYR 285
RASA T + KRG IPG++VDGMD+ AV+ A Y KGPI++EM TYRY
Sbjct: 233 AERASASTEYYKRGDY--IPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYH 290
Query: 286 GHSMSDPA-NYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSV 344
GHSMSDP +YRTREEI E+R DPIE ++KRL+ A+E +LK I+ +RK ++ +V
Sbjct: 291 GHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDEAV 350
Query: 345 EFAQSDKEPDPAELYSDILI 364
FA + EP+P+EL++D+ +
Sbjct: 351 AFATASPEPEPSELFTDVYV 370
|
Length = 394 |
| >gnl|CDD|36396 KOG1182, KOG1182, KOG1182, Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 2e-37
Identities = 86/279 (30%), Positives = 140/279 (50%), Gaps = 2/279 (0%)
Query: 86 IGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMH 145
G+EA+ +G +L D + YRE G +L G + M + G + + KG+ +H
Sbjct: 121 FGEEAIHIGSAAALEPQDLIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVH 180
Query: 146 MFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVC-FGDGAANQGQVYESFNIA 204
S + F + Q+ G A+A K R+ + C V FGDGAA++G + +FN A
Sbjct: 181 YGSKELNFVTISSPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFA 240
Query: 205 ALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKA 264
A VI+ NN +A+ T S + +G ++ I ++VDG D AV + +A
Sbjct: 241 ATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVKEA 300
Query: 265 VAYCRAHKGPIIIEMLTYRYRGHSMSDPAN-YRTREEINEMRSNHDPIEQVRKRLLHNKW 323
+ P++IE +TYR HS SD + YR+ +EI + PI + RK + N W
Sbjct: 301 REMAVTEQRPVLIEAMTYRVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIESNGW 360
Query: 324 ASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDI 362
SE D E+ N+RK + ++ A+ ++P+ EL+ D+
Sbjct: 361 WSEEDESELRKNIRKKVLEAIAAAEKKEKPNLTELFEDV 399
|
Length = 432 |
| >gnl|CDD|30913 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 6e-13
Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 16/181 (8%)
Query: 184 VVCFGDGA-ANQGQVYESFNIAALWNLNV---IYVIENNQYAMGTSVSRASAQTNFSKRG 239
++ GD A A QG V E+ N++ L +V +++ NNQ TS + A + +
Sbjct: 329 ILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVA 388
Query: 240 VSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGH------SMSDPA 293
P V+ D AV A+ Y K ++I+++ YR GH S++ P
Sbjct: 389 KMIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPSVTQPL 448
Query: 294 NYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEP 353
Y +++ + + +L+ SE + E+ + R ++ E + KE
Sbjct: 449 MY------QKIKKHPTVRKLYADKLIAEGVISEEEADELVNDYRDALDQGFEVVKEYKEM 502
Query: 354 D 354
D
Sbjct: 503 D 503
|
Length = 906 |
| >gnl|CDD|35672 KOG0451, KOG0451, KOG0451, Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 7e-12
Identities = 41/177 (23%), Positives = 73/177 (41%), Gaps = 4/177 (2%)
Query: 182 ICVVCFGDGA-ANQGQVYESFNIAALWNLNV---IYVIENNQYAMGTSVSRASAQTNFSK 237
+ V+ GD A A QG V E N++ + + V +++I NNQ T R + S
Sbjct: 321 LNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRGRSSAYCSD 380
Query: 238 RGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRT 297
S P + V+G D V A Y R + + I++ +R GH+ D + +
Sbjct: 381 IAKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDPTFTS 440
Query: 298 REEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPD 354
E+ + + ++L +E +KE+ K +N + A + + P
Sbjct: 441 PVMYKEVEARESVPDLYAQQLAKEGVLTEEKVKEMRDEYMKYLNEELALAPAYQPPP 497
|
Length = 913 |
| >gnl|CDD|35671 KOG0450, KOG0450, KOG0450, 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 2e-10
Identities = 39/188 (20%), Positives = 80/188 (42%), Gaps = 9/188 (4%)
Query: 173 ANKYRRSDKIC-----VVCFGDGA-ANQGQVYESFNIAALWNLNV---IYVIENNQYAMG 223
A ++ D+ ++ GD A A QG VYE+F+++ L + ++V+ NNQ
Sbjct: 389 AEQFYTGDEEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFT 448
Query: 224 TSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283
T A + + N P V+ D AV A + + ++++++ YR
Sbjct: 449 TDPRFARSSPYCTDVARVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYR 508
Query: 284 YRGHSMSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNS 343
GH+ D + ++R + +++ ++LL S+ ++ E I+ +
Sbjct: 509 RHGHNEIDEPMFTQPLMYKQIRKHKPVLQKYAEKLLSEGTVSQQEVDEEIKKYDNILEEA 568
Query: 344 VEFAQSDK 351
E ++ K
Sbjct: 569 FERSKDYK 576
|
Length = 1017 |
| >gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 1e-09
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 4/173 (2%)
Query: 188 GDGA-ANQGQVYESFNIAALWNLNV---IYVIENNQYAMGTSVSRASAQTNFSKRGVSFN 243
GD A A QG V E+ N++ L +V I++I NNQ T+ A + S
Sbjct: 351 GDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKMIQ 410
Query: 244 IPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREEINE 303
P V+ D AV AV Y K + I+++ YR GH+ +D + +
Sbjct: 411 APIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQPLMYQK 470
Query: 304 MRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPA 356
++ + P + +L+ A+E D+ E+ R + + S +E + A
Sbjct: 471 IKKHPTPRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWREMNTA 523
|
The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase. Length = 929 |
| >gnl|CDD|181824 PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.001
Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 24/182 (13%)
Query: 188 GDGA-ANQGQVYESFNIAALWNLNV---IYVIENNQYAMGTSVSRA-SAQ--TNFSKRGV 240
GD A A QG V E+ N++ L I+++ NNQ TS S T+ +K
Sbjct: 350 GDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAK--- 406
Query: 241 SFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSD------PAN 294
P V+G D AV A+ Y + K ++I+++ YR GH+ D P
Sbjct: 407 MVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLM 466
Query: 295 YRTREEINEMRSNHDPIEQV-RKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEP 353
Y+ +I H ++ +L+ +E + E+ R ++ E + +
Sbjct: 467 YK---KI----KKHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWRPA 519
Query: 354 DP 355
D
Sbjct: 520 DW 521
|
Length = 924 |
| >gnl|CDD|48179 cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC) | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 2e-12
Identities = 52/240 (21%), Positives = 92/240 (38%), Gaps = 38/240 (15%)
Query: 87 GQEAVIVGMKMSLTEGDQ-------MITAYREHGHILA--CGVDASKIMAELTGRQGGIS 137
G E++I + + + + A+R ++LA G +I +E G+
Sbjct: 19 GAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPE 78
Query: 138 KGKGGS---MHM-FSTKNGFYGGHGIVGAQVSL-------------GTGIAFANKYRRSD 180
+G H+ +S+ G + +SL G A + R D
Sbjct: 79 DDEGSGDVKYHLGYSSDRKTPSGKKV---HLSLAPNPSHLEAVNPVVMGKTRAKQDYRGD 135
Query: 181 K-----ICVVCFGDGA-ANQGQVYESFNIAALWNLNV---IYVIENNQYAMGTSVSRASA 231
+ ++ GD A A QG VYE+ N++ L I+++ NNQ T + +
Sbjct: 136 GERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRS 195
Query: 232 QTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSD 291
+ P V+G D AV A+ Y + K ++I+++ YR GH+ D
Sbjct: 196 SPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRRHGHNELD 255
|
OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.. Length = 265 |
| >gnl|CDD|48175 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 5e-11
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Query: 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNL-NVIYV 214
G G+ S+ G+A A K D V GDG +G V+E+ + A + L N+I +
Sbjct: 108 GQGL-----SVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAI 162
Query: 215 IENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKG- 273
+++N+ + + +K+ +F ++VDG D+ + A +++A + KG
Sbjct: 163 VDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEA----KKSKGK 218
Query: 274 PIIIEMLTYRYRG 286
P +I T + +G
Sbjct: 219 PTLIIAKTIKGKG 231
|
In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.. Length = 255 |
| >gnl|CDD|73294 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 5e-08
Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 17/164 (10%)
Query: 129 LTGRQGGIS-----KGKGGSMHMFSTKNGFYG-GHGIVGAQVSLGTGIAFANKYRRSDKI 182
LTGR+ G G ++ +G GH +S G+A A + +
Sbjct: 42 LTGRRDQFHTLRQYGGLSGFTKRSESEYDAFGTGHS--STSISAALGMAVARDLKGKKRK 99
Query: 183 CVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSF 242
+ GDGA G +E+ N A N+I ++ +N+ M S + + F + G +
Sbjct: 100 VIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNE--MSISPNVGTPGNLFEELGFRY 157
Query: 243 NIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRG 286
P VDG +I A+ + + + KGP+++ ++T + +G
Sbjct: 158 IGP---VDGHNIEALIKVLKEV----KDLKGPVLLHVVTKKGKG 194
|
Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).. Length = 195 |
| >gnl|CDD|33740 COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 9e-08
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNL-NVIYV 214
G G+ S+ G+A K + S V GDG ++GQV+E+ AA + L N+I +
Sbjct: 122 GQGL-----SVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAI 176
Query: 215 IENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKA 264
++ N+ + + + + +F ++VDG DI + ++KA
Sbjct: 177 VDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKA 226
|
Length = 243 |
| >gnl|CDD|35743 KOG0523, KOG0523, KOG0523, Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 3e-07
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 5/133 (3%)
Query: 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCF-GDGAANQGQVYESFNIAALWNL-NVIY 213
G +G +S G+A+A K+ V C GDG +G V+E+ ++A L N++
Sbjct: 116 ATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDNLVA 175
Query: 214 VIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKG 273
+ +NN+ ++ + S + + R +F + VDG D+ ++ + KA + K
Sbjct: 176 IYDNNKISIDGATSLGFDEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKSVK--GK- 232
Query: 274 PIIIEMLTYRYRG 286
P I+ T+ RG
Sbjct: 233 PTAIKATTFIGRG 245
|
Length = 632 |
| >gnl|CDD|48162 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 4e-06
Identities = 34/137 (24%), Positives = 48/137 (35%), Gaps = 15/137 (10%)
Query: 152 GFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCF-GDGAANQGQVYESFNIAALWNLN 210
G G +G + G A A R VVC GDG + A + L
Sbjct: 40 LTSTGFGAMGYGLPAAIGAALAAPDRP-----VVCIAGDGGFMMT--GQELATAVRYGLP 92
Query: 211 VIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQ--VDGMDIRAVKAT----MDKA 264
VI V+ NN GT A G + P + + V+ ++ A
Sbjct: 93 VIVVVFNNGG-YGTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVEDPEDLEAA 151
Query: 265 VAYCRAHKGPIIIEMLT 281
+A A GP +IE+ T
Sbjct: 152 LAEALAAGGPALIEVKT 168
|
These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.. Length = 168 |
| >gnl|CDD|145759 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 31/143 (21%), Positives = 48/143 (33%), Gaps = 37/143 (25%)
Query: 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCF-GDGAANQGQVYESFNIAALW-----N 208
GG G +G + G A R VV GDG N L N
Sbjct: 25 GGLGTMGYGLPAAIGAKLARPDRP-----VVAIAGDGGF-------QMNGQELATAVRYN 72
Query: 209 LNVIYVIENNQ-YAM------------GTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIR 255
L + V+ NN Y M + +F+K ++ G +V+
Sbjct: 73 LPITVVVLNNGGYGMTRGQQTPFGGKRYSGPDGDLPPVDFAKLAEAYGAKGARVE----- 127
Query: 256 AVKATMDKAVAYCRAHKGPIIIE 278
+++A+ AH GP +I+
Sbjct: 128 -SPEELEEALKEALAHDGPALID 149
|
Length = 150 |
| >gnl|CDD|177878 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 1e-05
Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 42/196 (21%)
Query: 136 ISKGKGGSMHMFSTKNGFYG------------GHGIVGAQVSLGTGIAFANKYRRSDKIC 183
I G+ G M NG G G G +S G G+A + +
Sbjct: 143 ILTGRRGKMKTIRQTNGLSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSV 202
Query: 184 VVCFGDGAANQGQVYESFNIAALWNLNVIYVI-ENNQYAMGTS----------------- 225
V GDGA GQ YE+ N A + N+I ++ +N Q ++ T+
Sbjct: 203 VSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALS 262
Query: 226 -------VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIE 278
+ R ++ T F + G + P VDG +I + + ++ + GP++I
Sbjct: 263 RLQSNCGMIRETSSTLFEELGFHYVGP---VDGHNIDDLVSILETLKS--TKTIGPVLIH 317
Query: 279 MLTYRYRGHSMSDPAN 294
++T + RG+ ++ A+
Sbjct: 318 VVTEKGRGYPYAERAD 333
|
Length = 641 |
| >gnl|CDD|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 46/216 (21%), Positives = 81/216 (37%), Gaps = 61/216 (28%)
Query: 129 LTGRQGGISKGK-GGSMHMF-----STKNGFYGGHGIVGAQVSLGT--GIAFANKYRRSD 180
LTGR+ + G + F S + F H + S+ G A A + D
Sbjct: 86 LTGRRDRFRTLRQKGGLSGFTKRSESEYDPFGAAH----SSTSISAALGFAKARALGQPD 141
Query: 181 KICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQY-------AMGTSVSRASAQT 233
V GDG+ G YE+ N A + +I ++ +N+ A+ +S +
Sbjct: 142 GDVVAVIGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSD 201
Query: 234 NFSK-----RGVSFNIP---------------GMQ----------------VDGMDIRAV 257
F++ +GV +P GM +DG D+ A+
Sbjct: 202 PFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEAL 261
Query: 258 KATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPA 293
+ + A A GP+++ ++T + RG++ PA
Sbjct: 262 LSVLRAARA---RADGPVLVHVVTEKGRGYA---PA 291
|
Length = 641 |
| >gnl|CDD|181051 PRK07586, PRK07586, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.004
Identities = 41/148 (27%), Positives = 57/148 (38%), Gaps = 44/148 (29%)
Query: 158 GIVGAQVSLGTGIAFANKYRRSDKICVVCF-GDGAANQGQVYESFNIAALW-----NLNV 211
G +G + L TG A A R+ V+ GDG+A +Y I ALW NL+V
Sbjct: 385 GAIGQGLPLATGAAVACPDRK-----VLALQGDGSA----MY---TIQALWTQARENLDV 432
Query: 212 IYVIENN-QYA--------MGTSVS--RASAQTNFSKRGVSFNIPGM----QVDGMDIRA 256
VI N YA +G RA + P + +GM + A
Sbjct: 433 TTVIFANRAYAILRGELARVGAGNPGPRALDMLDLDD-------PDLDWVALAEGMGVPA 485
Query: 257 VKAT----MDKAVAYCRAHKGPIIIEML 280
+ T A+A A GP +IE +
Sbjct: 486 RRVTTAEEFADALAAALAEPGPHLIEAV 513
|
Length = 514 |
| >gnl|CDD|183391 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 26/142 (18%)
Query: 188 GDGA-ANQGQVYESFNIAALWNLNV---IYVIENNQYAMGTS--VSRASA-QTNFSKRGV 240
GD A A QG V E+ N++ L I+++ NNQ T+ SR+S T+ +K
Sbjct: 655 GDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVAK--- 711
Query: 241 SFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGH------SMSDPAN 294
P V+G D AV A Y + ++I+++ YR RGH SM+ P
Sbjct: 712 MIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLM 771
Query: 295 YRTREEINEMRSNHDPIEQVRK 316
Y I+ RS VRK
Sbjct: 772 YDL---IDAKRS-------VRK 783
|
Length = 1228 |
| >gnl|CDD|178194 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate synthase | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.001
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 12/96 (12%)
Query: 136 ISKGKGGSMHMFSTKNGFYG------------GHGIVGAQVSLGTGIAFANKYRRSDKIC 183
I G+ MH NG G G G +S G G+A +
Sbjct: 110 ILTGRRDKMHTMRQTNGLSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNV 169
Query: 184 VVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ 219
V GDGA GQ YE+ N A + ++I ++ +N+
Sbjct: 170 VAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 205
|
Length = 677 |
| >gnl|CDD|31348 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.003
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 11/106 (10%)
Query: 129 LTGRQGGIS--KGKGGSMHMFSTKN-----GFYGGHGIVGAQVSLGTGIAFANKYRRSDK 181
LTGR+ + K G + F + F GH +S G+A A + D+
Sbjct: 82 LTGRREQFDTLRQKDG-LSGFPKREESEHDWFGVGHS--STSISAALGMAKARDLKGEDR 138
Query: 182 ICVVCFGDGAANQGQVYESFN-IAALWNLNVIYVIENNQYAMGTSV 226
V GDGA G +E+ N A N+I ++ +N+ ++ +V
Sbjct: 139 NVVAVIGDGALTGGMAFEALNNAGADLKSNLIVILNDNEMSISPNV 184
|
Length = 627 |
| >gnl|CDD|180086 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 0.002
Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 42/180 (23%)
Query: 124 KIMAELTGRQGGIS--KGKGG---------SMH-MFSTKNGFYGGHGIVGAQVSLGTGIA 171
KI LTGR+ + KGG S + F GH +S G+A
Sbjct: 82 KI---LTGRRDRFDTLRQKGGLSGFPKRSESEYDTFGA------GH--SSTSISAALGMA 130
Query: 172 FANKYRRSDK---ICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQY-------A 221
A + + + V+ GDGA G +E+ N A ++I ++ +N+ A
Sbjct: 131 KARDLKGGEDRKVVAVI--GDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGA 188
Query: 222 MGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281
+ ++R + T F + G ++ P +DG D+ A+ T+ A + KGP+++ ++T
Sbjct: 189 LSNYLARLRSSTLFEELGFNYIGP---IDGHDLDALIETLKNA----KDLKGPVLLHVVT 241
|
Length = 580 |
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 364 | dehydrogenase, E1 component [Candidatus Liberibacter as | ||
| CHL00149 | 343 | odpA pyruvate dehydrogenase E1 component alpha subunit; | 100.0 | |
| COG1071 | 358 | AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, deh | 100.0 | |
| TIGR03182 | 315 | PDH_E1_alph_y pyruvate dehydrogenase E1 component, alph | 100.0 | |
| TIGR03181 | 341 | PDH_E1_alph_x pyruvate dehydrogenase E1 component, alph | 100.0 | |
| cd02000 | 293 | TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) famil | 100.0 | |
| pfam00676 | 303 | E1_dh Dehydrogenase E1 component. This family uses thia | 100.0 | |
| KOG1182 | 432 | consensus | 100.0 | |
| PRK09404 | 931 | kgd alpha-ketoglutarate decarboxylase; Reviewed | 100.0 | |
| PRK12270 | 1234 | kgd alpha-ketoglutarate decarboxylase; Reviewed | 99.97 | |
| COG0567 | 906 | SucA 2-oxoglutarate dehydrogenase complex, dehydrogenas | 99.93 | |
| KOG0451 | 913 | consensus | 99.92 | |
| KOG0450 | 1017 | consensus | 99.91 | |
| TIGR00239 | 990 | 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component; | 99.29 | |
| KOG0225 | 394 | consensus | 100.0 | |
| cd02012 | 255 | TPP_TK Thiamine pyrophosphate (TPP) family, Transketola | 99.92 | |
| cd02007 | 195 | TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfam | 99.84 | |
| pfam00456 | 333 | Transketolase_N Transketolase, thiamine diphosphate bin | 99.84 | |
| PRK07979 | 574 | acetolactate synthase 3 catalytic subunit; Validated | 99.36 | |
| cd02006 | 202 | TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfam | 99.36 | |
| cd00568 | 168 | TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, | 99.35 | |
| PRK06725 | 570 | acetolactate synthase 3 catalytic subunit; Validated | 99.35 | |
| PRK07525 | 589 | sulfoacetaldehyde acetyltransferase; Validated | 99.34 | |
| PRK08327 | 568 | acetolactate synthase catalytic subunit; Validated | 99.34 | |
| PRK07064 | 544 | hypothetical protein; Provisional | 99.32 | |
| PRK06154 | 556 | hypothetical protein; Provisional | 99.32 | |
| PRK09107 | 594 | acetolactate synthase 3 catalytic subunit; Validated | 99.32 | |
| PRK06546 | 578 | pyruvate dehydrogenase; Provisional | 99.3 | |
| PRK08611 | 576 | pyruvate oxidase; Provisional | 99.3 | |
| PRK12474 | 518 | hypothetical protein; Provisional | 99.29 | |
| PRK11269 | 591 | glyoxylate carboligase; Provisional | 99.29 | |
| PRK07524 | 534 | hypothetical protein; Provisional | 99.29 | |
| PRK07418 | 615 | acetolactate synthase 3 catalytic subunit; Reviewed | 99.28 | |
| PRK09124 | 574 | pyruvate dehydrogenase; Provisional | 99.28 | |
| PRK06456 | 572 | acetolactate synthase catalytic subunit; Reviewed | 99.28 | |
| PRK07710 | 571 | acetolactate synthase catalytic subunit; Reviewed | 99.28 | |
| PRK08617 | 552 | acetolactate synthase; Reviewed | 99.28 | |
| cd02013 | 196 | TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-l | 99.28 | |
| PRK05858 | 543 | hypothetical protein; Provisional | 99.27 | |
| CHL00099 | 588 | ilvB acetohydroxyacid synthase large subunit | 99.27 | |
| PRK06048 | 562 | acetolactate synthase 3 catalytic subunit; Reviewed | 99.27 | |
| PRK08322 | 547 | acetolactate synthase; Reviewed | 99.26 | |
| cd02010 | 177 | TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolacta | 99.26 | |
| PRK06112 | 581 | acetolactate synthase catalytic subunit; Validated | 99.26 | |
| PRK08155 | 564 | acetolactate synthase catalytic subunit; Validated | 99.26 | |
| PRK08266 | 531 | hypothetical protein; Provisional | 99.26 | |
| PRK08978 | 548 | acetolactate synthase 2 catalytic subunit; Reviewed | 99.25 | |
| PRK07092 | 521 | benzoylformate decarboxylase; Reviewed | 99.25 | |
| PRK06457 | 549 | pyruvate dehydrogenase; Provisional | 99.24 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Mem | 99.24 | |
| PRK07449 | 548 | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic ac | 99.24 | |
| PRK07586 | 514 | hypothetical protein; Validated | 99.23 | |
| PRK08979 | 572 | acetolactate synthase 3 catalytic subunit; Validated | 99.23 | |
| PRK06466 | 574 | acetolactate synthase 3 catalytic subunit; Validated | 99.22 | |
| pfam02775 | 150 | TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal | 99.22 | |
| PRK08199 | 553 | acetolactate synthase 2 catalytic subunit; Validated | 99.21 | |
| PRK07282 | 566 | acetolactate synthase catalytic subunit; Reviewed | 99.2 | |
| cd02003 | 205 | TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subf | 99.19 | |
| PRK07789 | 612 | acetolactate synthase 1 catalytic subunit; Validated | 99.19 | |
| PRK08273 | 597 | pyruvate decarboxylase; Provisional | 99.19 | |
| cd02002 | 178 | TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subf | 99.19 | |
| PRK08527 | 560 | acetolactate synthase 3 catalytic subunit; Validated | 99.18 | |
| PRK06882 | 574 | acetolactate synthase 3 catalytic subunit; Validated | 99.18 | |
| PRK06276 | 586 | acetolactate synthase catalytic subunit; Reviewed | 99.17 | |
| cd02015 | 186 | TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydr | 99.17 | |
| cd02014 | 178 | TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate o | 99.17 | |
| PRK09259 | 572 | putative oxalyl-CoA decarboxylase; Validated | 99.16 | |
| cd02004 | 172 | TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, | 99.15 | |
| TIGR03393 | 539 | indolpyr_decarb indolepyruvate decarboxylase, Erwinia f | 99.14 | |
| PRK06965 | 587 | acetolactate synthase 3 catalytic subunit; Validated | 99.14 | |
| COG0028 | 550 | IlvB Thiamine pyrophosphate-requiring enzymes [acetolac | 99.12 | |
| TIGR03254 | 554 | oxalate_oxc oxalyl-CoA decarboxylase. In a number of ba | 99.08 | |
| cd02005 | 183 | TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_I | 99.08 | |
| TIGR03394 | 535 | indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxy | 99.06 | |
| cd02009 | 175 | TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, | 99.01 | |
| cd02001 | 157 | TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, Co | 98.99 | |
| PRK11865 | 298 | pyruvate ferredoxin oxidoreductase subunit beta; Provis | 98.99 | |
| cd02008 | 178 | TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR- | 98.92 | |
| cd03376 | 235 | TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), | 98.73 | |
| cd03375 | 193 | TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglu | 98.69 | |
| cd03372 | 179 | TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subf | 98.67 | |
| PRK06163 | 202 | hypothetical protein; Provisional | 98.6 | |
| TIGR02720 | 577 | pyruv_oxi_spxB pyruvate oxidase; InterPro: IPR014092 Me | 98.52 | |
| TIGR02418 | 553 | acolac_catab acetolactate synthase, catabolic; InterPro | 98.45 | |
| cd02018 | 237 | TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate | 98.37 | |
| COG1013 | 294 | PorB Pyruvate:ferredoxin oxidoreductase and related 2-o | 98.33 | |
| PRK09405 | 886 | aceE pyruvate dehydrogenase subunit E1; Reviewed | 98.24 | |
| KOG1185 | 571 | consensus | 98.21 | |
| TIGR03297 | 361 | Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This fam | 98.09 | |
| COG3961 | 557 | Pyruvate decarboxylase and related thiamine pyrophospha | 98.04 | |
| TIGR03186 | 889 | AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Severa | 97.97 | |
| PRK13012 | 898 | 2-oxoacid dehydrogenase subunit E1; Provisional | 97.84 | |
| COG4231 | 640 | Indolepyruvate ferredoxin oxidoreductase, alpha and bet | 97.45 | |
| TIGR02177 | 302 | PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subun | 97.39 | |
| KOG1184 | 561 | consensus | 97.37 | |
| KOG4166 | 675 | consensus | 97.36 | |
| TIGR03336 | 595 | IOR_alpha indolepyruvate ferredoxin oxidoreductase, alp | 97.06 | |
| COG3962 | 617 | Acetolactate synthase [Amino acid transport and metabol | 96.8 | |
| cd06586 | 154 | TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiam | 94.47 | |
| cd07039 | 164 | TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thi | 93.95 | |
| cd07035 | 155 | TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX | 90.87 | |
| TIGR00118 | 593 | acolac_lg acetolactate synthase, large subunit, biosynt | 90.42 | |
| PRK08659 | 377 | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; | 90.05 | |
| cd02016 | 265 | TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E | 99.89 | |
| PRK05899 | 661 | transketolase; Reviewed | 99.88 | |
| PRK12753 | 662 | transketolase; Reviewed | 99.83 | |
| PRK12754 | 663 | transketolase; Reviewed | 99.82 | |
| COG0021 | 663 | TktA Transketolase [Carbohydrate transport and metaboli | 99.81 | |
| PTZ00089 | 670 | transketolase; Provisional | 99.81 | |
| cd02017 | 386 | TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, | 99.48 | |
| cd03371 | 188 | TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC | 99.12 | |
| TIGR00118 | 593 | acolac_lg acetolactate synthase, large subunit, biosynt | 99.02 | |
| PRK09628 | 281 | oorB 2-oxoglutarate-acceptor oxidoreductase subunit Oor | 98.52 | |
| TIGR00204 | 627 | dxs 1-deoxy-D-xylulose-5-phosphate synthase; InterPro: | 98.51 | |
| PRK05778 | 306 | 2-oxoglutarate ferredoxin oxidoreductase subunit beta; | 98.44 | |
| PRK11866 | 286 | 2-oxoacid ferredoxin oxidoreductase subunit beta; Provi | 98.27 | |
| PRK11867 | 280 | 2-oxoglutarate ferredoxin oxidoreductase subunit beta; | 98.17 | |
| PRK11869 | 284 | 2-oxoacid ferredoxin oxidoreductase subunit beta; Provi | 97.86 | |
| COG1165 | 566 | MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxyl | 96.54 | |
| PRK08366 | 394 | vorA 2-ketoisovalerate ferredoxin oxidoreductase subuni | 91.28 | |
| COG3959 | 243 | Transketolase, N-terminal subunit [Carbohydrate transpo | 99.86 | |
| PRK05444 | 576 | 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | 99.86 | |
| PRK12315 | 581 | 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | 99.85 | |
| KOG0523 | 632 | consensus | 99.75 | |
| COG1154 | 627 | Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabo | 99.64 | |
| PRK12571 | 642 | 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | 99.62 | |
| TIGR00232 | 675 | tktlase_bact transketolase; InterPro: IPR005478 Transke | 99.81 | |
| PRK11864 | 300 | 2-ketoisovalerate ferredoxin oxidoreductase subunit bet | 99.03 | |
| pfam09364 | 379 | XFP_N XFP N-terminal domain. Bacterial enzyme splits fr | 98.66 | |
| PRK05261 | 786 | putative phosphoketolase; Provisional | 98.59 | |
| cd02011 | 227 | TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketo | 98.59 | |
| COG3960 | 592 | Glyoxylate carboligase [General function prediction onl | 97.89 | |
| COG3957 | 793 | Phosphoketolase [Carbohydrate transport and metabolism] | 97.68 | |
| TIGR01504 | 593 | glyox_carbo_lig glyoxylate carboligase; InterPro: IPR00 | 97.46 | |
| COG2609 | 887 | AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) | 98.42 | |
| TIGR00759 | 905 | aceE 2-oxo-acid dehydrogenase E1 component, homodimeric | 97.94 | |
| cd03377 | 365 | TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_ | 95.95 | |
| cd07038 | 162 | TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain o | 92.13 | |
| PRK07525 | 589 | sulfoacetaldehyde acetyltransferase; Validated | 91.52 | |
| PRK09259 | 572 | putative oxalyl-CoA decarboxylase; Validated | 90.95 | |
| TIGR03457 | 579 | sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Mem | 90.89 |
| >CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=752.49 Aligned_cols=321 Identities=40% Similarity=0.727 Sum_probs=313.7 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHH Q ss_conf 63438889999999998999999999999997898777220589878999999962389989994300689999974212 Q gi|255764490|r 43 EVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDA 122 (364) Q Consensus 43 ~~~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~ 122 (364) T Consensus 15 ~~~~ls~e~ll~~yr~M~l~R~fee~~~~l~~qG~i~g~~h~~~GqEA~~vg~~~al~~~D~i~~~yR~h~~~la~G~~~ 94 (343) T CHL00149 15 NSVNLNKEEALVLYRDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKALKPTDYVCSTYRDHVHALSKGVPP 94 (343) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCH T ss_conf 45898999999999999999999999999997799760646888689999999997799998970515278799819999 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCH Q ss_conf 2223432101234434556773211122123676674667674325431001123-------344443310256654302 Q gi|255764490|r 123 SKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYR-------RSDKICVVCFGDGAANQG 195 (364) Q Consensus 123 ~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~-------~~~~v~v~~~GDGa~~eG 195 (364) T Consensus 95 ~~~~ael~Gk~~G~~~GrggsmH~~~~~~~~~g~~~ivg~~~p~A~G~A~a~~~~~~~~k~~g~~~V~v~ffGDGat~eG 174 (343) T CHL00149 95 REVMAELFGKETGCSKGRGGSMHLFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKDTQELRVTACFFGDGTTNNG 174 (343) T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC T ss_conf 99999975888999999999777667222712455343345306999999999875430247898279998357633203 Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCE Q ss_conf 45676544321140111022103434444432321486435777776311112100002336887542102455454655 Q gi|255764490|r 196 QVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPI 275 (364) Q Consensus 196 ~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~ 275 (364) T Consensus 175 ~fhEalN~A~~~~LPviFv~eNN~yaist~~~~~~~~~~i~~ra~~yGi~~~~vDGnD~~av~~~~~~Ai~~aR~g~gP~ 254 (343) T CHL00149 175 QFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSEPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARSGQGPT 254 (343) T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHCCCCCHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCE T ss_conf 89999999998479768999878814657732305763377888656997201798789999999999999845699988 Q ss_pred EEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH Q ss_conf 89831566887666787667899999998983893799999999878999899999999999999999999984798788 Q gi|255764490|r 276 IIEMLTYRYRGHSMSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDP 355 (364) Q Consensus 276 lie~~tyR~~gHs~~D~~~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~ 355 (364) T Consensus 255 lie~~TyR~~gHs~~D~~~YR~~~E~e~w~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~A~~~p~P~~ 333 (343) T CHL00149 255 LIEALTYRFRGHSLADPDELRSKQEKEAWI-ARDPIKKLKSYIIDNELVSQKELNKIQKEVKIEIEDAVEFAISSPEPNI 333 (343) T ss_pred EEEEEEECCCCCCCCCCCCCCCHHHHHHHH-HCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH T ss_conf 999986079887898735567999999888-4796999999999879999999999999999999999999983899699 Q ss_pred HHHHHCCCC Q ss_conf 798623279 Q gi|255764490|r 356 AELYSDILI 364 (364) Q Consensus 356 ~~l~~~Vyv 364 (364) T Consensus 334 ~~l~~~Vya 342 (343) T CHL00149 334 SDLKRYLFA 342 (343) T ss_pred HHHHHHHCC T ss_conf 999876206 |
|
| >COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=755.96 Aligned_cols=320 Identities=48% Similarity=0.795 Sum_probs=312.1 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CEEEECCCCHHHHHHHHHHH Q ss_conf 34388899999999989999999999999978987772205898789999999623899-89994300689999974212 Q gi|255764490|r 44 VSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEG-DQMITAYREHGHILACGVDA 122 (364) Q Consensus 44 ~~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al~~~-D~~~~~yR~~~~~l~~G~~~ 122 (364) T Consensus 21 ~~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~~YR~h~~~l~~G~~~ 100 (358) T COG1071 21 NAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFPTYRDHGHLLARGVPL 100 (358) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCEEEECCCCH T ss_conf 45689999999999999999999999999857776657577666799999999843889887503557650100259999 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHH Q ss_conf 22234321012344345567732111221236766746676743254310011233444-43310256654302456765 Q gi|255764490|r 123 SKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDK-ICVVCFGDGAANQGQVYESF 201 (364) Q Consensus 123 ~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~-v~v~~~GDGa~~eG~f~Eal 201 (364) T Consensus 101 ~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEal 180 (358) T COG1071 101 KEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEAL 180 (358) T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHH T ss_conf 99999985524588888888631011000457878404665347999999999748998189999457865533399998 Q ss_pred HHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC Q ss_conf 44321140111022103434444432321486435777776311112100002336887542102455454655898315 Q gi|255764490|r 202 NIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364) Q Consensus 202 n~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364) T Consensus 181 N~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~t 260 (358) T COG1071 181 NFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVT 260 (358) T ss_pred HHHHHHCCCEEEEEECCCCEEECCHHHCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEE T ss_conf 99998569879999668716704566403324677550105887278779779999999999999997489988999987 Q ss_pred CCCCCCCCCCC-CCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH Q ss_conf 66887666787-66789999999898389379999999987899989999999999999999999998479878879862 Q gi|255764490|r 282 YRYRGHSMSDP-ANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYS 360 (364) Q Consensus 282 yR~~gHs~~D~-~~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~~~l~~ 360 (364) T Consensus 261 YR~~~HS~sDd~~~YRskeE~~~~~~-~DPi~r~~~~L~~~g~~see~~~~i~~e~~~~V~ea~e~a~~~p~P~~~~~~~ 339 (358) T COG1071 261 YRYGGHSTSDDPSKYRSKEEVEEWKK-RDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVDEAVEFAEASPYPDVSELFE 339 (358) T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHC-CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH T ss_conf 53588877798333679899987750-69499999999976898999999999999999999999997089998467651 Q ss_pred CCCC Q ss_conf 3279 Q gi|255764490|r 361 DILI 364 (364) Q Consensus 361 ~Vyv 364 (364) T Consensus 340 ~Vy~ 343 (358) T COG1071 340 DVYA 343 (358) T ss_pred CCCC T ss_conf 3214 |
|
| >TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=751.05 Aligned_cols=314 Identities=62% Similarity=1.019 Sum_probs=311.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHH Q ss_conf 89999999998999999999999997898777220589878999999962389989994300689999974212222343 Q gi|255764490|r 49 KEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAE 128 (364) Q Consensus 49 ~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae 128 (364) T Consensus 1 ke~ll~~yr~M~~~R~~e~~~~~l~~qG~i~g~~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~hg~~la~G~~~~~~~ae 80 (315) T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE 80 (315) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCHHHHHHH T ss_conf 97999999999999999999999997798884623888769999999997799888985133789999958999999999 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC Q ss_conf 21012344345567732111221236766746676743254310011233444433102566543024567654432114 Q gi|255764490|r 129 LTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWN 208 (364) Q Consensus 129 ~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~ 208 (364) T Consensus 81 l~g~~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~~G~f~EalN~A~~~~ 160 (315) T TIGR03182 81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWK 160 (315) T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCC T ss_conf 83678899999999776445212777887304037438776999998608998799995788665343999998874148 Q ss_pred CHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCC Q ss_conf 01110221034344444323214864357777763111121000023368875421024554546558983156688766 Q gi|255764490|r 209 LNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHS 288 (364) Q Consensus 209 lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs 288 (364) T Consensus 161 lPvifv~eNN~yaist~~~~~~~~~~i~~ra~~~gi~~~~vDGnD~~av~~~~~~Ai~~~R~g~gP~lie~~tyR~~gHs 240 (315) T TIGR03182 161 LPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHS 240 (315) T ss_pred CCEEEEEEECCCCCCCCHHHHCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC T ss_conf 98899995287415576777536633666554369985898357789999999999999755999889998742688889 Q ss_pred CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCC Q ss_conf 678766789999999898389379999999987899989999999999999999999998479878879862327 Q gi|255764490|r 289 MSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDIL 363 (364) Q Consensus 289 ~~D~~~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~~~l~~~Vy 363 (364) T Consensus 241 ~~D~~~YR~~~E~~~w~-~rDPi~~~~~~L~~~g~~~~~~~~~i~~~~~~ev~~a~~~A~~~p~P~~~~l~~~VY 314 (315) T TIGR03182 241 MSDPAKYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFAENSPEPPVEELYTDVY 314 (315) T ss_pred CCCCCCCCCHHHHHHHH-HCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC T ss_conf 98730246989999888-479399999999987999999999999999999999999998588979999985034 |
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=714.13 Aligned_cols=313 Identities=31% Similarity=0.515 Sum_probs=301.4 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHH Q ss_conf 77634388899999999989999999999999978987772205898789999999623899899943006899999742 Q gi|255764490|r 41 GFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGV 120 (364) Q Consensus 41 ~~~~~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~ 120 (364) T Consensus 15 ~~~~~~ls~e~ll~~yr~M~~~R~~e~~~~~l~~~G~i-g~~~~~~GqEA~avg~~~aL~~~D~i~~~yR~hg~~la~G~ 93 (341) T TIGR03181 15 PEPAPDLSDEELVELYRDMVLTRRFDTKALALQRQGRL-GTYAPNLGQEAAQVGSALALRKDDWVFPSYRDHAAMLARGV 93 (341) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHEECCC T ss_conf 87789989999999999999999999999999967986-57679997399999999758987989715672363312799 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH Q ss_conf 12222343210123443455677321112212367667466767432543100112334444331025665430245676 Q gi|255764490|r 121 DASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYES 200 (364) Q Consensus 121 ~~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ea 200 (364) T Consensus 94 ~~~~~~ae~~G~~~G~~~---------~~~~~~~~~~~iVG~~~p~A~G~A~a~k~~~~~~V~v~ffGDGA~~eG~fhEa 164 (341) T TIGR03181 94 PLVEILLYWRGDERGSWD---------PEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEA 164 (341) T ss_pred CHHHHHHHHCCCCCCCCC---------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHH T ss_conf 899999985597767888---------60147688874013465414778889987299988999946886432469999 Q ss_pred HHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEEC Q ss_conf 54432114011102210343444443232148643577777631111210000233688754210245545465589831 Q gi|255764490|r 201 FNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEML 280 (364) Q Consensus 201 ln~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ 280 (364) T Consensus 165 lN~Aa~~~LPviFv~eNN~yaist~~~~~~~~~~i~~ra~~yGi~~~~vDG~D~~av~~a~~~Av~~~R~g~gP~liE~~ 244 (341) T TIGR03181 165 LNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAV 244 (341) T ss_pred HHHHHHHCCCEEEEEEECCCCCCCCHHHHCCCCHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 99999838998999961773577763342377369875142498867448856799999999999998558998899998 Q ss_pred CCCCCCCCCCC-CCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 56688766678-76678999999989838937999999998789998999999999999999999999847987887986 Q gi|255764490|r 281 TYRYRGHSMSD-PANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELY 359 (364) Q Consensus 281 tyR~~gHs~~D-~~~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~~~l~ 359 (364) T Consensus 245 TyR~~gHs~~Dd~~~YR~~~E~~~w~-~~DPi~~~~~~L~~~g~~~e~e~~~i~~~i~~ev~~a~~~A~~sp~P~~~~l~ 323 (341) T TIGR03181 245 TYRLGPHTTADDPTRYRTKEEEEEWR-KKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAEALALPPPPVDDIF 323 (341) T ss_pred EECCCCCCCCCCCCCCCCHHHHHHHH-HCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH T ss_conf 50278867889987788989999988-58949999999998799999999999999999999999999968897999998 Q ss_pred HCCCC Q ss_conf 23279 Q gi|255764490|r 360 SDILI 364 (364) Q Consensus 360 ~~Vyv 364 (364) T Consensus 324 ~~VYa 328 (341) T TIGR03181 324 DHVYA 328 (341) T ss_pred HHHCC T ss_conf 54116 |
Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. |
| >cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=675.72 Aligned_cols=292 Identities=49% Similarity=0.835 Sum_probs=286.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 99998999999999999997898777220589878999999962389989994300689999974212222343210123 Q gi|255764490|r 55 AYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQG 134 (364) Q Consensus 55 ~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk~~ 134 (364) T Consensus 1 ~y~~M~~~R~~e~~~~~l~~~G~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293) T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293) T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCHHHHHHHHHCCCC T ss_conf 97899999999999999997896865520878769999999986899898981452089999909999999999825777 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH Q ss_conf 44345567732111221236766746676743254310011233444433102566543024567654432114011102 Q gi|255764490|r 135 GISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYV 214 (364) Q Consensus 135 g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifv 214 (364) T Consensus 81 g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDGa~~~G~f~EalN~A~~~~LPvlfv 160 (293) T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV 160 (293) T ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEE T ss_conf 88888888685887102050465412466334776789999758998899971687455147999999886537987999 Q ss_pred HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCC-CCC Q ss_conf 2103434444432321486435777776311112100002336887542102455454655898315668876667-876 Q gi|255764490|r 215 IENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMS-DPA 293 (364) Q Consensus 215 venN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~-D~~ 293 (364) T Consensus 161 ~enN~yaist~~~~~~~~~~~~~r~~~~gi~~~~vDG~D~~~v~~~~~~Ai~~~R~~~gP~lie~~TyR~~gHs~~dd~~ 240 (293) T cd02000 161 CENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPS 240 (293) T ss_pred EEECCEECCCCHHHHCCCCCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCC T ss_conf 97487302356887327744877353269876997487899999999999999853899889999856167556889865 Q ss_pred CCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 678999999989838937999999998789998999999999999999999999 Q gi|255764490|r 294 NYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFA 347 (364) Q Consensus 294 ~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~te~e~~~i~~~~~~~v~~a~~~A 347 (364) T Consensus 241 ~YR~~~E~~~~~-~~DPi~~~~~~L~~~g~~te~~~~~i~~ei~~~V~~A~~~A 293 (293) T cd02000 241 RYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293 (293) T ss_pred CCCCHHHHHHHH-HCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 688999999888-47919999999998799999999999999999999999519 |
PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). |
| >pfam00676 E1_dh Dehydrogenase E1 component | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=672.18 Aligned_cols=300 Identities=51% Similarity=0.859 Sum_probs=284.6 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 99989999999999999978987772205898789999999623899899943006899999742122223432101234 Q gi|255764490|r 56 YRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGG 135 (364) Q Consensus 56 yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk~~g 135 (364) T Consensus 1 Yr~m~~~r~ed~~~~~~~~~~-~~g~~h~~~GqEA~~vg~~~~l~~~D~~~~~yR~~g~~la~G~~~~~~~ae~~Gk~~g 79 (303) T pfam00676 1 YRMMTLRRMEDARMALYQRKG-RRGFCHLYAGQEALQVGIAAALNPGDYVIPTYRDHGNLLARGVSLEQVMAELTGNEAG 79 (303) T ss_pred CCCHHHHHHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCHHHHHHHHCCCCCC T ss_conf 905599999999999997389-8246489888899999999976999999806666999998199999999997789889 Q ss_pred CCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHH Q ss_conf 434556773211--122123676674667674325431001123344443310256654302456765443211401110 Q gi|255764490|r 136 ISKGKGGSMHMF--STKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIY 213 (364) Q Consensus 136 ~~~Gr~gs~H~~--~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvif 213 (364) T Consensus 80 ~~~Grggsmh~~~~~~~~~~~~~~~~vg~~~~~avG~A~a~k~~~~~~v~v~~~GDGa~~~G~f~EalN~A~~~~lPvif 159 (303) T pfam00676 80 CSKGKGGSMHGYYAPKNNRFYGGNGIVGAQVPLGAGIALAAKYRGKKEVAITLFGDGATNQGQFFEALNFAALWKLPVIF 159 (303) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEE T ss_conf 98999997745766644551478741304822656689999963899879999679975232999999987543898799 Q ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCC- Q ss_conf 2210343444443232148643577777631111210000233688754210245545465589831566887666787- Q gi|255764490|r 214 VIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDP- 292 (364) Q Consensus 214 vvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D~- 292 (364) T Consensus 160 v~eNN~yaist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~aR~g~gP~lie~~tyR~~gHs~~D~~ 239 (303) T pfam00676 160 VCENNQYAISTPAERSSASTYYADRARGYGIPGIRVDGMDPLAVYQAVKFAAERARTGNGPTLIELVTYRYGGHSMSDDP 239 (303) T ss_pred EEEECCCCCCCCHHHHCCCCCHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCC T ss_conf 99527733666664514755488886525802896488658999999999999986489988998751137866788887 Q ss_pred CCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 6678999999989838937999999998789998999999999999999999999847987887 Q gi|255764490|r 293 ANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPA 356 (364) Q Consensus 293 ~~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~~ 356 (364) T Consensus 240 ~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~ev~~a~~~A~~~p~P~pe 303 (303) T pfam00676 240 STYRTREEVEEVRKKKDPIKRLKKHLVSRGVVSEEELKEIEKEVRKEIEEAVKKAESDPEPNPE 303 (303) T ss_pred CCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 6777989999988659969999999998799999999999999999999999999808694899 |
This family uses thiamine pyrophosphate as a cofactor. This family includes pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate dehydrogenase. |
| >KOG1182 consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=557.03 Aligned_cols=319 Identities=29% Similarity=0.457 Sum_probs=311.3 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHH Q ss_conf 34388899999999989999999999999978987772205898789999999623899899943006899999742122 Q gi|255764490|r 44 VSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDAS 123 (364) Q Consensus 44 ~~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~ 123 (364) T Consensus 80 dp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRi-SFYmT~~GEEa~higSAAAL~p~Dli~gQYREaGVLlwRgftle 158 (432) T KOG1182 80 DPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRI-SFYMTNFGEEAIHIGSAAALEPQDLIYGQYREAGVLLWRGFTLE 158 (432) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE-EEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCHH T ss_conf 78846999999999889999999998887636437-89870344123101235417830222311355736888485299 Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHH Q ss_conf 223432101234434556773211122123676674667674325431001123344-4433102566543024567654 Q gi|255764490|r 124 KIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSD-KICVVCFGDGAANQGQVYESFN 202 (364) Q Consensus 124 ~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~-~v~v~~~GDGa~~eG~f~Ealn 202 (364) T Consensus 159 ~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~N 238 (432) T KOG1182 159 EFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFN 238 (432) T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHH T ss_conf 99987427853014665365213755232699615543026265545666540446780799994578666653233320 Q ss_pred HHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCC Q ss_conf 43211401110221034344444323214864357777763111121000023368875421024554546558983156 Q gi|255764490|r 203 IAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTY 282 (364) Q Consensus 203 ~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ty 282 (364) T Consensus 239 fAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtY 318 (432) T KOG1182 239 FAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTY 318 (432) T ss_pred HHHHHCCCEEEEECCCCEEECCCCHHHHCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 78772798899982797564056478706785587346563579986683167999988999999875168603564566 Q ss_pred CCCCCCCCCCC-CCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHC Q ss_conf 68876667876-67899999998983893799999999878999899999999999999999999984798788798623 Q gi|255764490|r 283 RYRGHSMSDPA-NYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSD 361 (364) Q Consensus 283 R~~gHs~~D~~-~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~~~l~~~ 361 (364) T Consensus 319 RvGHHSTSDDSt~YRsadEiq~W~~~~~pisrfr~~i~~~GWw~ee~E~~~rk~~rk~vl~a~~~aEk~~K~~~~~lF~d 398 (432) T KOG1182 319 RVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIESNGWWSEEDESELRKNIRKKVLEAIAAAEKKEKPNLTELFED 398 (432) T ss_pred HHCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH T ss_conf 52466677753013551255454305680799999887467757146899999999999999998761358998998888 Q ss_pred CC Q ss_conf 27 Q gi|255764490|r 362 IL 363 (364) Q Consensus 362 Vy 363 (364) T Consensus 399 VY 400 (432) T KOG1182 399 VY 400 (432) T ss_pred HH T ss_conf 86 |
|
| >PRK09404 kgd alpha-ketoglutarate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=226.78 Aligned_cols=306 Identities=20% Similarity=0.270 Sum_probs=244.6 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHHHHCC------CCCEEEE-CCCCHHHHH Q ss_conf 438889999999998999999999999997-89877722058987899999996238------9989994-300689999 Q gi|255764490|r 45 SEFNKEQELSAYRLMLLIRRFEEKAGQLYG-MGMVGGFCHLCIGQEAVIVGMKMSLT------EGDQMIT-AYREHGHIL 116 (364) Q Consensus 45 ~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~-qg~i~g~~~~~~GqEa~~vg~~~al~------~~D~~~~-~yR~~~~~l 116 (364) T Consensus 189 ~~~s~eeKk~IL~~L~~Ae~FE~FL~~Kf~g~KR---F--slEG~EslIp~l~~li~~~~~~gv~~iviGMaHRGRLNvL 263 (931) T PRK09404 189 PTFSAEEKKAILERLTAAEGFERFLHTKFVGQKR---F--SLEGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVL 263 (931) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE---E--CCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH T ss_conf 9989999999999999999999999887256336---5--0567016999999999999876987689625654318999 Q ss_pred H--HHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCC----------CCCCCCCCCCCCCCCCCCCCCCCCCCC-----C Q ss_conf 9--742122223432101234434556-773211122----------123676674667674325431001123-----3 Q gi|255764490|r 117 A--CGVDASKIMAELTGRQGGISKGKG-GSMHMFSTK----------NGFYGGHGIVGAQVSLGTGIAFANKYR-----R 178 (364) Q Consensus 117 ~--~G~~~~~~~ae~~gk~~g~~~Gr~-gs~H~~~~~----------~~~~~~~~~vg~~~p~A~G~A~a~k~~-----~ 178 (364) T Consensus 264 ~nvl~kp~~~iF~EF~g~~~~~~~~sGDVKYHlG~s~~~~~~g~~v~~sL~~NPSHLEaVnPVv~G~~RA~Qd~~~d~~~ 343 (931) T PRK09404 264 VNVLGKPPRDLFAEFEGKHADEVLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDTDR 343 (931) T ss_pred HHHHCCCHHHHHHHHCCCCCHHCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCEEEECCEECCCHHHHHHHHCCCCC T ss_conf 98856899999987458983010356771536705656650896589983489764256666110201344565177765 Q ss_pred CCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCC---HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHH Q ss_conf 4444331025665-430245676544321140---111022103434444432321486435777776311112100002 Q gi|255764490|r 179 SDKICVVCFGDGA-ANQGQVYESFNIAALWNL---NVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDI 254 (364) Q Consensus 179 ~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~l---PvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~ 254 (364) T Consensus 344 ~kvlpiliHGDAAfaGQGvV~Etl~ls~l~gY~tGGTIHiIvNNQIGFTT~p~d~RSs~Y~TDiAK~i~aPI~HVN~Ddp 423 (931) T PRK09404 344 SKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTNPRDSRSTPYCTDVAKMIQAPIFHVNGDDP 423 (931) T ss_pred CEEEEEEEECCHHHCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHCCCCCCCCHHHHHHCCCEEEECCCCH T ss_conf 62578887444432146566987654138886548648999616422214730213676631167874684688648987 Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 33688754210245545465589831566887666787667899999998983893799999999878999899999999 Q gi|255764490|r 255 RAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEM 334 (364) Q Consensus 255 ~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D~~~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~te~e~~~i~~ 334 (364) T Consensus 424 Eav~~~~~lA~eyR~~F~kDVvIDlvcYRr~GHNE~DeP~fTQP~mY~~I~~hp~v~~~Y~~~L~~~g~it~~~~~~~~~ 503 (931) T PRK09404 424 EAVVFATQLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLMYKKIKKHPTTRKLYADKLVAEGVITEEEADEMVN 503 (931) T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 99999999999999985887079777652037776688666787888887649988999999987649989999999999 Q ss_pred HHHHHHHHHHHHHHHCCCCCHH Q ss_conf 9999999999999847987887 Q gi|255764490|r 335 NVRKIINNSVEFAQSDKEPDPA 356 (364) Q Consensus 335 ~~~~~v~~a~~~A~~~p~P~~~ 356 (364) T Consensus 504 ~~~~~l~~~~~~~~~~~-~~~~ 524 (931) T PRK09404 504 EYRDALDAGFEVVKEYK-PNKA 524 (931) T ss_pred HHHHHHHHHHHHHCCCC-CCCC T ss_conf 99999999987640136-7776 |
|
| >PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=213.03 Aligned_cols=302 Identities=19% Similarity=0.206 Sum_probs=236.1 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHHHHCC------CCCEEEE-CCCCHHHHH Q ss_conf 438889999999998999999999999997-89877722058987899999996238------9989994-300689999 Q gi|255764490|r 45 SEFNKEQELSAYRLMLLIRRFEEKAGQLYG-MGMVGGFCHLCIGQEAVIVGMKMSLT------EGDQMIT-AYREHGHIL 116 (364) Q Consensus 45 ~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~-qg~i~g~~~~~~GqEa~~vg~~~al~------~~D~~~~-~yR~~~~~l 116 (364) T Consensus 493 ~~~s~~~k~~iL~~L~~Ae~FE~FL~~Ky~GqKR---F-s-LEG~EslIP~ld~~i~~aa~~Gv~evviGMaHRGRLNVL 567 (1234) T PRK12270 493 EKPTRAEQKYILSKLNAAEAFETFLQTKYVGQKR---F-S-LEGAESVIPLLDAVIDQAAEHGLDEVVIGMAHRGRLNVL 567 (1234) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE---E-C-CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH T ss_conf 8999899999999999999999999864677534---3-5-677258999999999999876988799816874079999 Q ss_pred H--HHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCC------CCC-----CCCCCCCCCCCCCCCCCCCCCCCCC---C Q ss_conf 9--74212222343210123443455677--321112------212-----3676674667674325431001123---3 Q gi|255764490|r 117 A--CGVDASKIMAELTGRQGGISKGKGGS--MHMFST------KNG-----FYGGHGIVGAQVSLGTGIAFANKYR---R 178 (364) Q Consensus 117 ~--~G~~~~~~~ae~~gk~~g~~~Gr~gs--~H~~~~------~~~-----~~~~~~~vg~~~p~A~G~A~a~k~~---~ 178 (364) T Consensus 568 ~Ni~gKp~~~iF~EFeg~~~p~~~~gsGDVKYHlG~s~~~~~~~G~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~~~ 647 (1234) T PRK12270 568 ANIVGKPYSQIFREFEGNLDPRQAHGSGDVKYHLGAEGTYTQMFGNEIKVSLAANPSHLEAVDPVLEGIVRAKQDLLDKG 647 (1234) T ss_pred HHHHCCCHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCEEECCEEEEEHHHHHHHHCCC T ss_conf 98708999999998579988021267787244676531133378977889844898633011673310023335654357 Q ss_pred C---CCCCCCCCCCCC-CCCHHHHHHHHHHHHCCC---HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC Q ss_conf 4---444331025665-430245676544321140---111022103434444432321486435777776311112100 Q gi|255764490|r 179 S---DKICVVCFGDGA-ANQGQVYESFNIAALWNL---NVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDG 251 (364) Q Consensus 179 ~---~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~l---PvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG 251 (364) T Consensus 648 ~~~~~vlpiliHGDAAFaGQGVV~ETlnlS~L~gY~tGGTIHiVVNNQIGFTT~P~daRSS~YcTDvAK~i~aPIfHVNg 727 (1234) T PRK12270 648 EDGFTVLPLLLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQIGFTTAPESSRSSEYATDVAKMIQAPIFHVNG 727 (1234) T ss_pred CCCCEEEEEEEECHHHHCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEECC T ss_conf 77751467887430332257778987531158987668758999617601137821145666721578875785688558 Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHH Q ss_conf 00233688754210245545465589831566887666787667899999998983893799999999878999899999 Q gi|255764490|r 252 MDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKE 331 (364) Q Consensus 252 ~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D~~~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~te~e~~~ 331 (364) T Consensus 728 DDPEAVv~v~~LA~eyRq~F~kDVvIDLVcYRR~GHNE~DeP~fTQPlMY~~I~~hpsv~~lY~~~Li~eG~it~~e~~~ 807 (1234) T PRK12270 728 DDPEAVVRVARLAFEYRQRFKKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDEKRSVRKLYTEALIGRGDISMEEAEQ 807 (1234) T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHH T ss_conf 98799999999999999986887278667542037766678666888899998739988999999998679989999999 Q ss_pred HHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999998479 Q gi|255764490|r 332 IEMNVRKIINNSVEFAQSDK 351 (364) Q Consensus 332 i~~~~~~~v~~a~~~A~~~p 351 (364) T Consensus 808 ~~~~~~~~Le~~~~~~k~~~ 827 (1234) T PRK12270 808 ALRDYQGQLERVFNEVREAE 827 (1234) T ss_pred HHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999999864137 |
|
| >COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=177.42 Aligned_cols=304 Identities=19% Similarity=0.225 Sum_probs=231.5 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHHHCC------CCCEEEE-CCCCHHH Q ss_conf 63438889999999998999999999999997898777220589-87899999996238------9989994-3006899 Q gi|255764490|r 43 EVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCI-GQEAVIVGMKMSLT------EGDQMIT-AYREHGH 114 (364) Q Consensus 43 ~~~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~-GqEa~~vg~~~al~------~~D~~~~-~yR~~~~ 114 (364) T Consensus 168 ~~~~~~~e~k~~~l~~L~~ae~fE~fl-----~~kf~g~KRFslEG~eslip~l~~~i~~~~~~G~~~vviGMaHRGRLN 242 (906) T COG0567 168 GKPTFTAEEKKAILKRLTAAEGFERFL-----HTKFPGAKRFSLEGGESLIPMLDELIDRAGKQGVKEVVIGMAHRGRLN 242 (906) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH-----HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH T ss_conf 788878899999999999999999986-----242889710153545678899999999988668230784365542378 Q ss_pred HHH--HHHHHHHHHHHHHCCCCCCC-CC-----CCCCCCCCCCCC--C--CCCCCCCCCCCCCCCCCCCCCCCCCCC--- Q ss_conf 999--74212222343210123443-45-----567732111221--2--367667466767432543100112334--- Q gi|255764490|r 115 ILA--CGVDASKIMAELTGRQGGIS-KG-----KGGSMHMFSTKN--G--FYGGHGIVGAQVSLGTGIAFANKYRRS--- 179 (364) Q Consensus 115 ~l~--~G~~~~~~~ae~~gk~~g~~-~G-----r~gs~H~~~~~~--~--~~~~~~~vg~~~p~A~G~A~a~k~~~~--- 179 (364) T Consensus 243 vL~nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV~G~vRa~Qd~~~d~~ 322 (906) T COG0567 243 VLVNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDTE 322 (906) T ss_pred HHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHCHHHHCCHHHHHHHHCCCC T ss_conf 89988379989999984799877766666420356533334689806898348952543324465340676665413776 Q ss_pred --CCCCCCCCCCCC-CCCHHHHHHHHHHHHCCC---HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH Q ss_conf --444331025665-430245676544321140---11102210343444443232148643577777631111210000 Q gi|255764490|r 180 --DKICVVCFGDGA-ANQGQVYESFNIAALWNL---NVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMD 253 (364) Q Consensus 180 --~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~l---PvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D 253 (364) T Consensus 323 ~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~TDvAKm~~aPifHVN~DD 402 (906) T COG0567 323 RDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVAKMIEAPIFHVNADD 402 (906) T ss_pred CCEEEEEEEECCHHCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCEEECCCCC T ss_conf 45267888743720178528999987417997666975899974577998996523478888874443678543035688 Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf 23368875421024554546558983156688766678766789999999898389379999999987899989999999 Q gi|255764490|r 254 IRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIE 333 (364) Q Consensus 254 ~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D~~~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~te~e~~~i~ 333 (364) T Consensus 403 PEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs~TqP~mY~~I~~h~t~r~~ya~~Lv~~gvis~~~~~~~~ 482 (906) T COG0567 403 PEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPSVTQPLMYQKIKKHPTVRKLYADKLIAEGVISEEEADELV 482 (906) T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 33302667778999863378722322557888987554300127899998764997144479999762232599999999 Q ss_pred HHHHHHHHHHHHHHHHCC Q ss_conf 999999999999998479 Q gi|255764490|r 334 MNVRKIINNSVEFAQSDK 351 (364) Q Consensus 334 ~~~~~~v~~a~~~A~~~p 351 (364) T Consensus 483 ~~~r~~L~~~~~~~~~~~ 500 (906) T COG0567 483 NDYRDALDQGFEVVKEYK 500 (906) T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 999998630546676666 |
|
| >KOG0451 consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-24 Score=175.97 Aligned_cols=301 Identities=20% Similarity=0.277 Sum_probs=227.5 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCHHHHHHHH------HHHCCCCCEEEE-CCCCH Q ss_conf 76343888999999999899999999999999789877722058--9878999999------962389989994-30068 Q gi|255764490|r 42 FEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLC--IGQEAVIVGM------KMSLTEGDQMIT-AYREH 112 (364) Q Consensus 42 ~~~~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~--~GqEa~~vg~------~~al~~~D~~~~-~yR~~ 112 (364) T Consensus 149 l~~e~l~keEr~~i~~Lmlksq~fD~Flat-----KFp-TvKRYGgEGAESM~aFF~eLl~~sa~~~ie~viigmpHRGR 222 (913) T KOG0451 149 LDQEQLGKEERCEIAELMLKSQAFDNFLAT-----KFP-TVKRYGGEGAESMLAFFWELLRDSAQANIEHVIIGMPHRGR 222 (913) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCC-HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 889885379888899999866667778774-----163-54540554488899999999987886285058870566674 Q ss_pred HHHHH--HHHHHHHHHHHHHCCCCCC------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99999--7421222234321012344------------------345567732111221236766746676743254310 Q gi|255764490|r 113 GHILA--CGVDASKIMAELTGRQGGI------------------SKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAF 172 (364) Q Consensus 113 ~~~l~--~G~~~~~~~ae~~gk~~g~------------------~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~ 172 (364) T Consensus 223 lnLlt~Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhvt-----MlpNPSHLEAvNPVAmGKtR 297 (913) T KOG0451 223 LNLLTALLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVT-----MLPNPSHLEAVNPVAMGKTR 297 (913) T ss_pred CHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEE-----ECCCHHHHHCCCCHHHCCHH T ss_conf 0588888439989999873073227503567777888732355440468844799-----55881664015725322036 Q ss_pred CCCCCC--------------CCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCC---HHHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 011233--------------4444331025665-430245676544321140---1110221034344444323214864 Q gi|255764490|r 173 ANKYRR--------------SDKICVVCFGDGA-ANQGQVYESFNIAALWNL---NVIYVIENNQYAMGTSVSRASAQTN 234 (364) Q Consensus 173 a~k~~~--------------~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~l---PvifvvenN~~aist~~~~~~~~~~ 234 (364) T Consensus 298 ~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rGRSs~y 377 (913) T KOG0451 298 SRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRGRSSAY 377 (913) T ss_pred HHHHHHCCCCCCCCCCCCCCCCEEEEEEECCHHHCCCCCCHHHHHHCCCCCEEECCEEEEEECCCCCCCCCCCCCCCCHH T ss_conf 77775137898987768887726899985451111586368777431487335565589996262002376446653024 Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHH-H Q ss_conf 357777763111121000023368875421024554546558983156688766678766789999999898389379-9 Q gi|255764490|r 235 FSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREEINEMRSNHDPIE-Q 313 (364) Q Consensus 235 i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D~~~YR~~~Ei~~~~~~~DPI~-~ 313 (364) T Consensus 378 csDiaK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp~ftspvmyk~v~a-ReSvPdl 456 (913) T KOG0451 378 CSDIAKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDPTFTSPVMYKEVEA-RESVPDL 456 (913) T ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHCCCCCCCCCCCCHHHHHHHHH-HHCCCHH T ss_conf 567898737877984799989999999999999998642225306777775234446744467047777776-4134089 Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 99999987899989999999999999999999998479878 Q gi|255764490|r 314 VRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPD 354 (364) Q Consensus 314 ~~~~L~~~g~~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~ 354 (364) T Consensus 457 ya~~L~~eg~~tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~ 497 (913) T KOG0451 457 YAQQLAKEGVLTEEKVKEMRDEYMKYLNEELALAPAYQPPP 497 (913) T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 99999861555399999999999999989984077668996 |
|
| >KOG0450 consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=164.47 Aligned_cols=306 Identities=21% Similarity=0.267 Sum_probs=230.0 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC------CCCCEEEE-CCCCHH Q ss_conf 77634388899999999989999999999999978987772205898789999999623------89989994-300689 Q gi|255764490|r 41 GFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSL------TEGDQMIT-AYREHG 113 (364) Q Consensus 41 ~~~~~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al------~~~D~~~~-~yR~~~ 113 (364) T Consensus 240 tP~~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seKR--F-G-LEGcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRL 315 (1017) T KOG0450 240 TPGPMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEKR--F-G-LEGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRL 315 (1017) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--C-C-CCCHHHHHHHHHHHHHHHHHCCCHHEEECCCCCCHH T ss_conf 99851157788999999988764799998650885201--3-6-553254506789886235441802157337765326 Q ss_pred HHHHH--HHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCC---CCC---------CCCCCCCCCCCCCCCCCCCCCCCC-- Q ss_conf 99997--42122223432101234434556-77321112---212---------367667466767432543100112-- Q gi|255764490|r 114 HILAC--GVDASKIMAELTGRQGGISKGKG-GSMHMFST---KNG---------FYGGHGIVGAQVSLGTGIAFANKY-- 176 (364) Q Consensus 114 ~~l~~--G~~~~~~~ae~~gk~~g~~~Gr~-gs~H~~~~---~~~---------~~~~~~~vg~~~p~A~G~A~a~k~-- 176 (364) T Consensus 316 NvL~NVvRKpl~qIfseF~g~~~-~DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~ 394 (1017) T KOG0450 316 NVLANVVRKPLEQIFSEFSGLEA-ADEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYT 394 (1017) T ss_pred HHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCHHHCCCCCEEECHHHHHHHHC T ss_conf 88888876079999875168877-76788753463013302666667853689995072220124862213388898860 Q ss_pred ---CCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCC---HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf ---334444331025665-430245676544321140---1110221034344444323214864357777763111121 Q gi|255764490|r 177 ---RRSDKICVVCFGDGA-ANQGQVYESFNIAALWNL---NVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQV 249 (364) Q Consensus 177 ---~~~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~l---PvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~v 249 (364) T Consensus 395 ~D~~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar~v~aPIFHV 474 (1017) T KOG0450 395 GDEEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVARVVNAPIFHV 474 (1017) T ss_pred CCCCCCEEEEEEEECCHHHCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEE T ss_conf 66135625789985451103674488861444577765697489997262121048642247987356898708975765 Q ss_pred HCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHH Q ss_conf 00002336887542102455454655898315668876667876678999999989838937999999998789998999 Q gi|255764490|r 250 DGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDL 329 (364) Q Consensus 250 DG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D~~~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~te~e~ 329 (364) T Consensus 475 NaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP~FTQPlMYk~I~k~~~~l~~Y~ekLl~egtvs~~ev 554 (1017) T KOG0450 475 NADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEPMFTQPLMYKQIRKHKPVLQKYAEKLLSEGTVSQQEV 554 (1017) T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHH T ss_conf 58876999999999999998716670799888741487755675434637999987088589999999874285149999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999999999998479 Q gi|255764490|r 330 KEIEMNVRKIINNSVEFAQSDK 351 (364) Q Consensus 330 ~~i~~~~~~~v~~a~~~A~~~p 351 (364) T Consensus 555 d~~~~k~~~I~eeafe~sKd~~ 576 (1017) T KOG0450 555 DEEIKKYDNILEEAFERSKDYK 576 (1017) T ss_pred HHHHHHHHHHHHHHHHHHCCCC T ss_conf 9999999999999998644454 |
|
| >TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component; InterPro: IPR011603 2-oxoglutarate dehydrogenase is a key enzyme in the TCA cycle, converting 2-oxoglutarate, coenzyme A and NAD(+) to succinyl-CoA, NADH and carbon dioxide | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=93.92 Aligned_cols=303 Identities=22% Similarity=0.299 Sum_probs=212.5 Q ss_pred CCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCHHHHHHHHHHHCC------CCCEEE-ECCCCHH Q ss_conf 634388899999-9999899999999999999789877722058-987899999996238------998999-4300689 Q gi|255764490|r 43 EVSEFNKEQELS-AYRLMLLIRRFEEKAGQLYGMGMVGGFCHLC-IGQEAVIVGMKMSLT------EGDQMI-TAYREHG 113 (364) Q Consensus 43 ~~~~ls~e~l~~-~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~-~GqEa~~vg~~~al~------~~D~~~-~~yR~~~ 113 (364) T Consensus 194 ~~~~~~~~~~~~~~l~~l~~~~g~~~~l~~~~~-----g~~~~~~~g~~~~~p~~~~~~~~~~~~g~~~~~~g~~~~g~l 268 (990) T TIGR00239 194 EPFQFNSEEKLSAFLDRLTAAEGFERFLGAKFP-----GAKRFSLEGLDALVPGLKELIRHSVKSGTEDVVLGMAHRGRL 268 (990) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHH T ss_conf 023311467889999876654345776520166-----621002232024555689998755420411222200012304 Q ss_pred HHHH--HHHHHHHHHHHHHCCCCCC----------CCCCCCCC-CCCCC------CCC-----CCCCCCCCCCCCCCCCC Q ss_conf 9999--7421222234321012344----------34556773-21112------212-----36766746676743254 Q gi|255764490|r 114 HILA--CGVDASKIMAELTGRQGGI----------SKGKGGSM-HMFST------KNG-----FYGGHGIVGAQVSLGTG 169 (364) Q Consensus 114 ~~l~--~G~~~~~~~ae~~gk~~g~----------~~Gr~gs~-H~~~~------~~~-----~~~~~~~vg~~~p~A~G 169 (364) T Consensus 269 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~g~g~~~~~~g~~~~~~~~~~~~~~l~l~~~p~~l~~~~p~~~g 348 (990) T TIGR00239 269 NVLVNVLGKPPESLFDEFAGKPASDLPSEDPLESATDGTGDVKYHLGRFGSDFTTDGKLVHLPLAFNPSHLEIVSPVVLG 348 (990) T ss_pred HHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEECCCCCCHHHCCCHHHH T ss_conf 56776532631356776416531013443421001255541123330012221125662012210364200010301210 Q ss_pred CCCCCCCCC----------CCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCC---HHHHHHHCCCCCCCCCC-CCCCCCCC Q ss_conf 310011233----------4444331025665-430245676544321140---11102210343444443-23214864 Q gi|255764490|r 170 IAFANKYRR----------SDKICVVCFGDGA-ANQGQVYESFNIAALWNL---NVIYVIENNQYAMGTSV-SRASAQTN 234 (364) Q Consensus 170 ~A~a~k~~~----------~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~l---PvifvvenN~~aist~~-~~~~~~~~ 234 (364) T Consensus 349 ~~~~~~~~~~~~g~p~~~~~~~l~~~~~gd~~~~g~g~~~~~~~~~~~~~~~~gg~~~~~~~~~~g~~~~~~~~~~~~~~ 428 (990) T TIGR00239 349 STRARLERLNDLGYPVPEETKVLAILLHGDAAFAGQGVVQETLNLSSLRGYSVGGTIHIVINNQIGFTTSNPADARSTPY 428 (990) T ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC T ss_conf 24666655431378654233203566505422345423555430100454223642688750521222366210014432 Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHH Q ss_conf 35777776311112100002336887542102455454655898315668876667876678999999989838937999 Q gi|255764490|r 235 FSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREEINEMRSNHDPIEQV 314 (364) Q Consensus 235 i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D~~~YR~~~Ei~~~~~~~DPI~~~ 314 (364) T Consensus 429 ~~d~~~~~~~p~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~d~~~~~~~g~~~~d~p~~~~p~~~~~~~~~~~~~~~~ 508 (990) T TIGR00239 429 CSDLAKGIEAPIFHVNADDPEAVAFAFRLAVEYRNTFKRDVLIDLVGYRRHGHNEADEPSATQPLLYDKIKKHPTPRKVY 508 (990) T ss_pred HHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHH T ss_conf 23455432033366247644678899988888765312100010011101467644564210036788775045302455 Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 999998789998999999999999999999999847 Q gi|255764490|r 315 RKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSD 350 (364) Q Consensus 315 ~~~L~~~g~~te~e~~~i~~~~~~~v~~a~~~A~~~ 350 (364) T Consensus 509 ~~~l~~~g~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 544 (990) T TIGR00239 509 ADKLVSEGVVTEEDVTEHKKWVWNLYRDALEKGDDV 544 (990) T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 656653011114566556778888777776544431 |
This activity of this enzyme is tightly regulated and it is a major determinant of the metabolic flux through the TCA cycle. This enzyme is composed of multiple copies of three different subunits: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3) which is often shared with similar enzymes such as pyruvate dehydrogenase . The E2 component forms a large multimeric core which binds the peripheral E1 and E3 subunits. The substrate is transferred between the active sites of the different subunits by a lipoyl moiety, bound to a lysine residue from the E2 polypeptide. This entry represents the E1 subunit of 2-oxoglutarate dehydrogenase. It catalyses the decarboxylation of this compound in a thiamine pyrophosphate-dependent manner, transferring the resultant succinyl group onto the liposyl moiety bound to the E2 subunit. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the E2 component of 2-oxoglutarate dehydrogenase enzyme. ; GO: 0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity, 0030976 thiamin pyrophosphate binding, 0006096 glycolysis. |
| >KOG0225 consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=698.10 Aligned_cols=353 Identities=52% Similarity=0.861 Sum_probs=322.8 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 4344444556899984434321111135754-----457763-4388899999999989999999999999978987772 Q gi|255764490|r 8 VTVGDIKMALNPSVSAKRAATSSVDCVDIPF-----LEGFEV-SEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGF 81 (364) Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~ 81 (364) T Consensus 11 ~l~~~~~~~~s~~~~~~r~~~~~~~~~~~~~~~~~l~~~p~~s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGF 90 (394) T KOG0225 11 LLRPLAQAPPSRTLVNTRLVPSDVTFESSPFELHKLEEGPSTSVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGF 90 (394) T ss_pred HHCHHHHCCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEE T ss_conf 64305326863001003457643310256406887157998159950888999999999999999999998865211213 Q ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 20589878999999962389989994300689999974212222343210123443455677321112212367667466 Q gi|255764490|r 82 CHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVG 161 (364) Q Consensus 82 ~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg 161 (364) T Consensus 91 CHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~~~v~aEL~Gr~~Gc~kGKGGSMHmy~k--~FyGGnGIVG 168 (394) T KOG0225 91 CHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSVREVLAELMGRQAGCSKGKGGSMHMYAK--NFYGGNGIVG 168 (394) T ss_pred EEECCCHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCEEEECC--CCCCCCCEEC T ss_conf 66326579999999985467774477765205886438619999999846212556677861055032--3347664232 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 76743254310011233444433102566543024567654432114011102210343444443232148643577777 Q gi|255764490|r 162 AQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVS 241 (364) Q Consensus 162 ~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~ 241 (364) T Consensus 169 AQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG-~ 247 (394) T KOG0225 169 AQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYGMGTSAERASASTEYYKRG-D 247 (394) T ss_pred CCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHCCHHHHHCC-C T ss_conf 577731128999974368865999954665444038988539998689879998268876676034320382777506-8 Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCC-CCCCCHHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 631111210000233688754210245545465589831566887666787-6678999999989838937999999998 Q gi|255764490|r 242 FNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDP-ANYRTREEINEMRSNHDPIEQVRKRLLH 320 (364) Q Consensus 242 ~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D~-~~YR~~~Ei~~~~~~~DPI~~~~~~L~~ 320 (364) T Consensus 248 y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~ 326 (394) T KOG0225 248 Y-IPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIE 326 (394) T ss_pred C-CCCEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 7-875578783124589999999999753799879998634654654689986521189999887605848999999987 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCC Q ss_conf 78999899999999999999999999984798788798623279 Q gi|255764490|r 321 NKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDILI 364 (364) Q Consensus 321 ~g~~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~~~l~~~Vyv 364 (364) T Consensus 327 ~~late~ELKai~k~irkeVdeav~~A~~~p~p~~~eL~~dvy~ 370 (394) T KOG0225 327 LGLATEEELKAIDKEIRKEVDEAVAFATASPEPEPSELFTDVYV 370 (394) T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC T ss_conf 03667999999999999999999987632899998998777522 |
|
| >cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.3e-26 Score=185.25 Aligned_cols=147 Identities=23% Similarity=0.369 Sum_probs=128.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHCCCCCCCCCCCCC Q ss_conf 12367667466767432543100112334444331025665430245676544321140-11102210343444443232 Q gi|255764490|r 151 NGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNL-NVIYVIENNQYAMGTSVSRA 229 (364) Q Consensus 151 ~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~l-PvifvvenN~~aist~~~~~ 229 (364) T Consensus 98 ~gi~~stGsLG~gls~a~G~A~a~k~~~~~~~v~~~iGDGel~EG~~wEAl~~A~~~~L~nLi~ivD~N~~~~~g~~~~~ 177 (255) T cd02012 98 PGVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDI 177 (255) T ss_pred CCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCC T ss_conf 99651787537789999999999986288871799942511033128999999855587756999868982625603025 Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC--CCCC-CCCCHHH Q ss_conf 148643577777631111210000233688754210245545465589831566887666--7876-6789999 Q gi|255764490|r 230 SAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSM--SDPA-NYRTREE 300 (364) Q Consensus 230 ~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~--~D~~-~YR~~~E 300 (364) T Consensus 178 ~~~~~l~~~~~sfG~~v~~vdGhd~~~i~~a~~~a~~---~~~kP~~I~~~T~KGkG~~~~E~~~~~H~~~~~~ 248 (255) T cd02012 178 LFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKK---SKGKPTLIIAKTIKGKGVPFMENTAKWHGKPLGE 248 (255) T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH---CCCCCEEEEEEEEECCCCCHHCCCCCCCCCCCCH T ss_conf 4768899999966981110179999999999999986---7999589999965114882321997200699998 |
In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity. |
| >cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-22 Score=162.67 Aligned_cols=124 Identities=23% Similarity=0.388 Sum_probs=108.3 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCC Q ss_conf 36766746676743254310011233444433102566543024567654432114011102210343444443232148 Q gi|255764490|r 153 FYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQ 232 (364) Q Consensus 153 ~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~ 232 (364) T Consensus 70 ~~~stGsLG~Gls~a~G~Ala~k~~~~~~~v~~l~GDGEl~EG~~wEA~~~A~~~~~nli~iid~N~~~i~~~~~----- 144 (195) T cd02007 70 DAFGTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVG----- 144 (195) T ss_pred CEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEECCCCC----- T ss_conf 845886468899999999999956799984999977811401899999999765189869999679876148866----- Q ss_pred CCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC Q ss_conf 643577777631111-210000233688754210245545465589831566887 Q gi|255764490|r 233 TNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRG 286 (364) Q Consensus 233 ~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~g 286 (364) T Consensus 145 -~~~~~f~afGw~~v~~vDGhd~~~i~~al~~a~----~~~~P~~Iia~TikGkG 194 (195) T cd02007 145 -TPGNLFEELGFRYIGPVDGHNIEALIKVLKEVK----DLKGPVLLHVVTKKGKG 194 (195) T ss_pred -CCCCHHHHCCCCEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEEECCCC T ss_conf -642368774886778607899999999999986----28999899999641508 |
Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). |
| >pfam00456 Transketolase_N Transketolase, thiamine diphosphate binding domain | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-20 Score=150.81 Aligned_cols=154 Identities=21% Similarity=0.294 Sum_probs=126.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHCC Q ss_conf 212367667466767432543100112334----------444331025665430245676544321140-111022103 Q gi|255764490|r 150 KNGFYGGHGIVGAQVSLGTGIAFANKYRRS----------DKICVVCFGDGAANQGQVYESFNIAALWNL-NVIYVIENN 218 (364) Q Consensus 150 ~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~----------~~v~v~~~GDGa~~eG~f~Ealn~A~~~~l-PvifvvenN 218 (364) T Consensus 104 ~~Gve~tTG~LGqGl~~avG~Ala~k~l~~~~n~~~~~~~d~~vy~l~GDGel~EG~~~EA~~~Ag~~~L~nLi~i~D~N 183 (333) T pfam00456 104 TAGVEVTTGPLGQGIANAVGMAIAEANLAATYNRPGFDIVDHYTYVFLGDGCLMEGVSSEASSLAGHLKLGNLIAFYDDN 183 (333) T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCC T ss_conf 99824068774222567887999999987663667666557449998464312539899999999871789789997457 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC-CCC---- Q ss_conf 4344444323214864357777763111121-0000233688754210245545465589831566887666-787---- Q gi|255764490|r 219 QYAMGTSVSRASAQTNFSKRGVSFNIPGMQV-DGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSM-SDP---- 292 (364) Q Consensus 219 ~~aist~~~~~~~~~~i~~ra~~~gi~~~~v-DG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~-~D~---- 292 (364) T Consensus 184 ~iqidG~t~~~~~-ed~~~rf~a~GW~v~~v~DGhD~~~I~~Ai~~Ak~~---~~kPt~Ii~~TiiGkG~p~~eg~~~~H 259 (333) T pfam00456 184 RISIDGETEISFT-EDTAKRFEAYGWHVIEVEDGHDVEAIAAAIEEAKAE---KDKPTLIICRTVIGYGSPNKQGTHDVH 259 (333) T ss_pred CEECCCCCCCCCC-CHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHC---CCCCEEEEEEEEEECCCCCCCCCCCCC T ss_conf 5421798453555-109999876490799946999999999999999865---899816986421515884446787656 Q ss_pred CCCCCHHHHHHHHHH Q ss_conf 667899999998983 Q gi|255764490|r 293 ANYRTREEINEMRSN 307 (364) Q Consensus 293 ~~YR~~~Ei~~~~~~ 307 (364) T Consensus 260 G~plg~ee~~~~k~~ 274 (333) T pfam00456 260 GAPLGADEVAALKEK 274 (333) T ss_pred CCCCCHHHHHHHHHH T ss_conf 888898999999998 |
This family includes transketolase enzymes EC:2.2.1.1. and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes utilize thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis. |
| >PRK07979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.6e-13 Score=105.42 Aligned_cols=119 Identities=18% Similarity=0.335 Sum_probs=90.0 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC---------- Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-34444---------- Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT---------- 224 (364) Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist---------- 224 (364) T Consensus 419 ~~GsmG~~lpaAIGA~lA~----p~~~Vv~i~GDG~f~m~-~-qEL~Ta~r~~lpi~iiV~NN~~yg~ir~~q~~~~~g~ 492 (574) T PRK07979 419 GLGTMGFGLPAALGVKMAL----PEETVVCVTGDGSIQMN-I-QELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGR 492 (574) T ss_pred CCCCCCCCHHHHHHHHHHC----CCCCEEEEECCHHHHHH-H-HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCC T ss_conf 8731122068999999858----99978999781587641-9-9999999958992899995870469999999861887 Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf -43232148643577777631111210000233688754210245545465589831566 Q gi|255764490|r 225 -SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 225 -~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 493 ~~~~~~~~~pDf~~lA~a~G~~g~~v~--~~~el~~al~~Al~~~~~~-~p~lidV~vd~ 549 (574) T PRK07979 493 HSQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELESKLSEALEQVRNN-RLVFVDVTVDG 549 (574) T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHCCCCC-CCEEEEEEECC T ss_conf 674566899999999997799799978--9999999999998423799-81899999788 |
|
| >cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-13 Score=107.73 Aligned_cols=122 Identities=20% Similarity=0.264 Sum_probs=90.8 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCC---------- Q ss_conf 76674667674325431001123344443310256654302456765443211401110221034-3444---------- Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMG---------- 223 (364) Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~ais---------- 223 (364) T Consensus 54 ~~~g~mG~glPaAiGaklA----~Pdr~Vv~i~GDGsf~m~-~~E-L~Ta~r~~lpii~vV~NN~~~g~ir~~q~~~~~~ 127 (202) T cd02006 54 GQAGPLGWTVPAALGVAAA----DPDRQVVALSGDYDFQFM-IEE-LAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMD 127 (202) T ss_pred CCCCHHHHHHHHHHHHHHH----CCCCEEEEEECCCCHHHH-HHH-HHHHHHHCCCEEEEEEECCHHHHHHHHHHHHCCC T ss_conf 9987033189999999987----699859999768405512-999-9999996998399999795568999999985347 Q ss_pred ----CCCCCC------CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf ----443232------1486435777776311112100002336887542102455454655898315668 Q gi|255764490|r 224 ----TSVSRA------SAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRY 284 (364) Q Consensus 224 ----t~~~~~------~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~ 284 (364) T Consensus 128 ~~~~~~~~~~~~~~~~~~~~D~~kiAea~G~~g~rV~--~~~eL~~Al~~A~~~~~~~~~P~lIeviidr~ 196 (202) T cd02006 128 YQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAILERV 196 (202) T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC T ss_conf 4423254666885446789899999997899899979--99999999999998751479978999997671 |
E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors. |
| >cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.5e-13 Score=103.37 Aligned_cols=116 Identities=26% Similarity=0.383 Sum_probs=89.0 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC-------- Q ss_conf 676674667674325431001123344443310256654302456765443211401110221034-34444-------- Q gi|255764490|r 154 YGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT-------- 224 (364) Q Consensus 154 ~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist-------- 224 (364) T Consensus 42 ~~~~g~mG~~~p~AiGa~~a~----p~~~vv~i~GDG~f~~~--~~el~ta~~~~l~i~~iv~nN~~~~~~~~~~~~~~~ 115 (168) T cd00568 42 STGFGAMGYGLPAAIGAALAA----PDRPVVCIAGDGGFMMT--GQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYG 115 (168) T ss_pred CCCCCHHHHHHHHHHHHHHHC----CCCEEEEEECCCCCEEC--CHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCC T ss_conf 898753777999999999878----99839999779742113--176645653188426999977613677999985028 Q ss_pred --CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC Q ss_conf --432321486435777776311112100002336887542102455454655898315 Q gi|255764490|r 225 --SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364) Q Consensus 225 --~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364) T Consensus 116 ~~~~~~~~~~~d~~~~a~~~G~~~~~v~~--~~el~~al~~a~----~~~~p~li~V~t 168 (168) T cd00568 116 GRVSGTDLSNPDFAALAEAYGAKGVRVED--PEDLEAALAEAL----AAGGPALIEVKT 168 (168) T ss_pred CCCCCCCCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHH----HCCCCEEEEEEC T ss_conf 98765658888778999974986999899--999999999998----389978999989 |
These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. |
| >PRK06725 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.5e-13 Score=103.93 Aligned_cols=117 Identities=21% Similarity=0.353 Sum_probs=85.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCC----------C Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-3444----------4 Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMG----------T 224 (364) Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~ais----------t 224 (364) T Consensus 420 ~~G~mG~glpaAiGA~lA~----p~r~Vv~i~GDG~f~m~-~-~EL~Ta~r~~lpi~ivV~NN~~yg~ir~~q~~~~~~~ 493 (570) T PRK06725 420 GLGTMGFGFPAAIGAQLAK----EEELVICIAGDASFQMN-I-QELQTIAENNIPVKVFIINNKFLGMVRQWQEMFYENR 493 (570) T ss_pred CCCCCCCCHHHHHHHHHHC----CCCCEEEEECCHHHHHH-H-HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCC T ss_conf 7776456079999999848----99818999775277522-9-9999999968993899997972059999999862898 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 432321486435777776311112100002336887542102455454655898315668 Q gi|255764490|r 225 SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRY 284 (364) Q Consensus 225 ~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~ 284 (364) T Consensus 494 ~~~~~l~~pdf~~~A~a~G~~g~~V~--~~~eL~~Al~~Al~----~~gP~lIev~vd~~ 547 (570) T PRK06725 494 LSESKIGSPDFVKVAEAYGVKGLRAT--NSTEAKQVMLEAFA----HEGPVVVDFCVEEG 547 (570) T ss_pred CCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHC----CCCCEEEEEEECCC T ss_conf 67574899999999997799799979--99999999999981----99989999997887 |
|
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.9e-13 Score=104.32 Aligned_cols=120 Identities=17% Similarity=0.209 Sum_probs=90.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCCC-----C-- Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-3444443-----2-- Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTSV-----S-- 227 (364) Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~~-----~-- 227 (364) T Consensus 433 ~~G~mG~glpaAiGa~lA----~p~~~Vv~i~GDG~f~m~-~-~EL~Ta~r~~lpv~ivV~NN~~yg~~~~~q~~~~~~~ 506 (589) T PRK07525 433 SFGNCGYAFPAIIGAKIA----CPDRPVVGFAGDGAWGIS-M-NEMTTCVRHNWPVTAVVFRNYQWGAEKKNQTDFYNNR 506 (589) T ss_pred CCCCCCCHHHHHHHHHHH----CCCCCEEEEECCHHHHHH-H-HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCC T ss_conf 656532257899999985----899968999885687552-9-9999999978892899997883348999999871884 Q ss_pred ----CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf ----32148643577777631111210000233688754210245545465589831566 Q gi|255764490|r 228 ----RASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 228 ----~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 507 ~~~~~~~~~~df~~~A~a~G~~g~rV~--~~~el~~al~~Al~~~~~~g~P~lidv~~d~ 564 (589) T PRK07525 507 FVGTELDNNVSYAGIARAMGAEGVVVD--TQEELGPALKRAIDAQMNEGKTTVIEVMCNQ 564 (589) T ss_pred EECCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHHCCCCCCCEEEEEEECH T ss_conf 120326999898999997798799989--9999999999999733358994899999682 |
|
| >PRK08327 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=6e-13 Score=103.16 Aligned_cols=121 Identities=19% Similarity=0.326 Sum_probs=89.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHCCCHHHHHHHCCC-CCCCC-------- Q ss_conf 7667466767432543100112334444331025665430245676-5443211401110221034-34444-------- Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYES-FNIAALWNLNVIYVIENNQ-YAMGT-------- 224 (364) Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ea-ln~A~~~~lPvifvvenN~-~aist-------- 224 (364) T Consensus 427 ~~~g~mG~~lpaAiGa~lA~----p~r~Vv~i~GDGsf~m~-~~e~~l~ta~r~~lpi~ivV~NN~~yg~i~~~~~~~~~ 501 (568) T PRK08327 427 GSAGGLGWALGAALGAKLAR----PDRTVIATVGDGSFIFG-VPTACYYVAERYGLPIVVIVLNNGGWLAVAEAVLEVYP 501 (568) T ss_pred CCCCCCCCCHHHHHHHHHHC----CCCEEEEEECCCHHHHC-CHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCC T ss_conf 88775455148999999739----99829999846177647-65899999999783949999968621188999999703 Q ss_pred ----------CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf ----------43232148643577777631111210000233688754210245545465589831566 Q gi|255764490|r 225 ----------SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 225 ----------~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 502 ~g~~~~~~~~~~~~~~p~~Df~~lA~a~G~~g~~V~--~~~el~~Al~~Ala~~~~-~~p~lieV~vd~ 567 (568) T PRK08327 502 DGLAARANTFPGTDFTPRPDFAKIARAFGGYAERVE--TPEELPGALGEALAAIRE-GRSAVLDVQVDR 567 (568) T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHHCCC-CCEEEEEEECCC T ss_conf 332211366766567899999999997798599979--999999999999861679-976999998289 |
|
| >PRK07064 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.2e-13 Score=103.02 Aligned_cols=128 Identities=21% Similarity=0.347 Sum_probs=88.8 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCC Q ss_conf 1122123676674667674325431001123344443310256654302456765443211401110221034-344444 Q gi|255764490|r 147 FSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTS 225 (364) Q Consensus 147 ~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~ 225 (364) T Consensus 394 ~~p~~~~~~~~g~mG~glpaAiGa~lA----~p~~~vv~i~GDGsf~m~-~~-eL~Ta~r~~lpi~ivV~NN~~~g~i~~ 467 (544) T PRK07064 394 FEPRANVHALGGGIGQGLQMGIGAALA----GPGRKTVCLVGDGGLMLN-LG-ELATAVQENANMVIVLMNDGGYGVIRN 467 (544) T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHH----CCCCCEEEEECHHHHHHH-HH-HHHHHHHHCCCCEEEEEECCCCHHHHH T ss_conf 677752466887510068999999985----989978999851797765-99-999999968690899996894489999 Q ss_pred C----------CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC Q ss_conf 3----------232148643577777631111210000233688754210245545465589831566887 Q gi|255764490|r 226 V----------SRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRG 286 (364) Q Consensus 226 ~----------~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~g 286 (364) T Consensus 468 ~q~~~~~~~~~~~dl~~~df~~lA~a~G~~g~rV~~--~~eL~~al~~A~~----~~gP~vIeV~~~~i~p 532 (544) T PRK07064 468 IQDAQYGGRRCYVELHTPDFAQLAASLGLPHWRVTS--ADDFEAVLREALA----KEGPVLVEVDMLSIGP 532 (544) T ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHHH----CCCCEEEEEECCCCCC T ss_conf 998743887455768999999999977997999799--9999999999982----8995899998787798 |
|
| >PRK06154 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.4e-13 Score=102.98 Aligned_cols=120 Identities=16% Similarity=0.196 Sum_probs=87.1 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC--------CC Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-34444--------43 Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT--------SV 226 (364) Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist--------~~ 226 (364) T Consensus 420 ~~g~mG~glpaAiGa~lA----~p~~~Vv~i~GDGsf~m~-~-qEL~Ta~r~~lpv~viV~NN~~~g~~~~~~~~~~~~~ 493 (556) T PRK06154 420 KTTQLGYGLGLAMGAKLA----RPDALVANLLGDAAFGEC-G-MDFETAVRNRIPTVTILLNNGCMGGYDKHMPLSTTKY 493 (556) T ss_pred CCCCCCCHHHHHHHHHHH----CCCCCEEEEECCHHHHHH-H-HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCC T ss_conf 877445406999999973----899938999873798877-9-9999999949997899996806389998867506766 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 2321486435777776311112100002336887542102455454655898315668 Q gi|255764490|r 227 SRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRY 284 (364) Q Consensus 227 ~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~ 284 (364) T Consensus 494 ~~~~~~~Df~~lA~a~G~~g~~V~--~~~el~~Al~~A~~~~~~-g~P~lIeV~~~~e 548 (556) T PRK06154 494 RTRFLSGDYAMIARALGGYTERVE--DPERLVPALRRAARKAKT-GRPALLEIMTAEE 548 (556) T ss_pred CCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHHCCC-CCEEEEEEEECCC T ss_conf 787589999999997799799979--999999999999854889-9839999998987 |
|
| >PRK09107 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.1e-13 Score=102.66 Aligned_cols=115 Identities=20% Similarity=0.319 Sum_probs=81.7 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC----------- Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-34444----------- Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT----------- 224 (364) Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist----------- 224 (364) T Consensus 428 ~g~mG~glpaAIGA~lA----~P~r~Vv~i~GDGsf~m~-~~-EL~Tavr~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~ 501 (594) T PRK09107 428 LGTMGYGLPAALGVQVA----HPDALVIDIAGDASIQMN-MQ-EMSTAVQYNLPIKIFILNNQYMGMVRQWQQLLHGNRL 501 (594) T ss_pred CCCHHHHHHHHHHHHHH----CCCCCEEEEECCHHHHHH-HH-HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCC T ss_conf 56222269999999986----889948999887187655-99-9999999688928999979865089999998638866 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 43232148643577777631111210000233688754210245545465589831566 Q gi|255764490|r 225 SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 225 ~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 502 ~~~~~~~~pDf~~lA~a~G~~g~rV~--~~~el~~Al~~Al~----~~gP~lIeV~vd~ 554 (594) T PRK09107 502 SHSYTEALPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMID----VDKPVIFDCRVAN 554 (594) T ss_pred CCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECC T ss_conf 76567899999999997799799979--99999999999982----8998899999779 |
|
| >PRK06546 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-12 Score=101.39 Aligned_cols=123 Identities=23% Similarity=0.361 Sum_probs=87.1 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCC---------CC Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-3444---------44 Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMG---------TS 225 (364) Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~ais---------t~ 225 (364) T Consensus 406 ~~GsmG~glpaAIGA~lA----~P~r~Vv~i~GDG~f~m~-~~E-L~Tavr~~lpv~ivV~NN~~~g~i~~~~~~~g~~~ 479 (578) T PRK06546 406 LHGSMANALPHAIGAQAA----DPGRQVISMSGDGGLSML-MGE-LLTVALHDLPVKVVVFNNSSLGMVKLEMLVDGLPD 479 (578) T ss_pred CCCCCCCCHHHHHHHHHH----CCCCCEEEEECCCHHHHH-HHH-HHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCC T ss_conf 878765615899999985----899958999894088876-999-99999978897899997843579999998648977 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCC Q ss_conf 32321486435777776311112100002336887542102455454655898315668876667876 Q gi|255764490|r 226 VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPA 293 (364) Q Consensus 226 ~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D~~ 293 (364) T Consensus 480 ~~~~~~~~Dfa~lA~a~G~~g~rV~--~~~el~~al~~Al~----~~gP~lIeV~vD---p~~~~~p~ 538 (578) T PRK06546 480 FGTDVPDVDFAAIAAALGIHAVRVE--DPADIRGALKEAFA----HDGPALVDVVTD---PNALSIPP 538 (578) T ss_pred CCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEEC---CCCCCCCC T ss_conf 5577999899999997799899979--99999999999981----899689999838---99878899 |
|
| >PRK08611 pyruvate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.5e-13 Score=102.18 Aligned_cols=114 Identities=19% Similarity=0.304 Sum_probs=82.7 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC---------CC Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-34444---------43 Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT---------SV 226 (364) Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist---------~~ 226 (364) T Consensus 407 ~G~mG~glpaAiGA~lA----~p~r~Vv~i~GDGsf~mt-~-qEL~Tavr~~lpv~ivV~NN~~yg~i~~~q~~~g~~~~ 480 (576) T PRK08611 407 LGTMGCGLPGAIAAKIA----FPNRQAIAICGDGGFSMV-M-QDFVTAVKYKLPITVVVLNNQQLAFIKYEQQAAGELEY 480 (576) T ss_pred CCCCCCCHHHHHHHHHH----CCCCCEEEEECCHHHHHH-H-HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCC T ss_conf 77766406999999986----899978999834387665-9-99999999788978999969821899999997379876 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCC Q ss_conf 23214864357777763111121000023368875421024554546558983156 Q gi|255764490|r 227 SRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTY 282 (364) Q Consensus 227 ~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ty 282 (364) T Consensus 481 ~~~l~~~Df~~~A~a~G~~g~rV~--~~~el~~Al~~Al~----~~~P~lIeV~vD 530 (576) T PRK08611 481 AIDLSDMDYAKFAEACGGKGYTVK--SADELDPAFEEALA----QDKPVIIDVYVD 530 (576) T ss_pred CCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEEC T ss_conf 684899899999997799799979--99999999999982----899799999868 |
|
| >PRK12474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-12 Score=100.58 Aligned_cols=115 Identities=26% Similarity=0.327 Sum_probs=80.4 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC-C------ Q ss_conf 676674667674325431001123344443310256654302456765443211401110221034-34444-4------ Q gi|255764490|r 154 YGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT-S------ 225 (364) Q Consensus 154 ~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist-~------ 225 (364) T Consensus 385 ~~~~G~mG~glpaAiGa~lA----~P~r~Vv~i~GDG~f~m~-~~E-L~Tavr~~lpi~~vV~NN~~yg~i~~~~~~~~~ 458 (518) T PRK12474 385 PLTGGSIGQGLPLAAGAAVA----APDRKVVCPQGDGGAAYT-MQA-LWTMARENLDVTVVIFANRSYAILNGELQRVGA 458 (518) T ss_pred CCCCCCCCCHHHHHHHHHHH----CCCCCEEEEECCCCHHCC-HHH-HHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHC T ss_conf 78874000267999946875----898818999478104107-999-999999785929999978630169999999623 Q ss_pred ----------CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEEC Q ss_conf ----------3232148643577777631111210000233688754210245545465589831 Q gi|255764490|r 226 ----------VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEML 280 (364) Q Consensus 226 ----------~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ 280 (364) T Consensus 459 ~~~~~~~~~~~~~~~p~~Dfa~iA~a~G~~g~~V~--~~~el~~al~~Al~----~~gP~lIev~ 517 (518) T PRK12474 459 QGAGRNALSMLDLHNPELNWMKIAEGLGVEASRAT--TAEEFSAQYAAAMA----QRGPRLIEAM 517 (518) T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHC----CCCCEEEEEE T ss_conf 46786532203477999899999997899899979--99999999999973----9997799997 |
|
| >PRK11269 glyoxylate carboligase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-12 Score=101.13 Aligned_cols=129 Identities=19% Similarity=0.230 Sum_probs=94.9 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCC----------- Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-3444----------- Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMG----------- 223 (364) Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~ais----------- 223 (364) T Consensus 417 ~~G~mG~glPaAIGA~lA----~Pdr~VV~i~GDG~f~m~--~qEL~Tavr~~lpvv~vV~NN~~~G~Ir~~Q~~~~~~~ 490 (591) T PRK11269 417 QAGPLGWTIPAALGVRAA----DPERPVVALSGDYDFQFL--IEELAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMDY 490 (591) T ss_pred CCCHHHHHHHHHHHHHHH----CCCCCEEEEECCHHHHHH--HHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCC T ss_conf 655589999999999997----899968999873687541--99999999958890899996882309999999744564 Q ss_pred ---CCCCCC------CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCC Q ss_conf ---443232------148643577777631111210000233688754210245545465589831566887666787 Q gi|255764490|r 224 ---TSVSRA------SAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDP 292 (364) Q Consensus 224 ---t~~~~~------~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D~ 292 (364) T Consensus 491 ~~~~~~~~~~~~~~~~~~~Df~~~Aea~G~~g~rV~--~~~el~~Al~~Ala~~~~~~~P~lv~v~id~~~~~~~~~~ 566 (591) T PRK11269 491 CVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAEFRVPVVVEVILERVTNISMGTE 566 (591) T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCH T ss_conf 422055777886556788889999997798799989--9999999999997411357998899999426456565520 |
|
| >PRK07524 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-12 Score=100.32 Aligned_cols=118 Identities=23% Similarity=0.337 Sum_probs=87.2 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC---------CC Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-34444---------43 Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT---------SV 226 (364) Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist---------~~ 226 (364) T Consensus 406 ~G~mG~~lpaaiGaalA~----p~r~vi~i~GDGsf~m~-~~-eL~Ta~r~~lpi~iiV~NN~gyg~i~~~~~~~~~~~~ 479 (534) T PRK07524 406 YGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQFT-LP-ELASAVEADLPLVVLLWNNQGYGEIRRYMVARDIEPV 479 (534) T ss_pred CCCCCCCHHHHHHHHHHC----CCCCEEEEECCHHHHHH-HH-HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCC T ss_conf 787664359999999829----89978999872687541-99-9999999785918999979832599999986278865 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC Q ss_conf 232148643577777631111210000233688754210245545465589831566887 Q gi|255764490|r 227 SRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRG 286 (364) Q Consensus 227 ~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~g 286 (364) T Consensus 480 ~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~al~----~~gp~lIeV~~~r~~~ 533 (534) T PRK07524 480 GVDPYTPDFAALARAFGCAAERVA--DLDQLQAALRAAFA----RPGPTLIEVDQARWFA 533 (534) T ss_pred CCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHC----CCCCEEEEEECCEECC T ss_conf 577899999999997799799979--99999999999980----8995899997823046 |
|
| >PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-12 Score=101.15 Aligned_cols=114 Identities=25% Similarity=0.399 Sum_probs=81.8 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC------------ Q ss_conf 74667674325431001123344443310256654302456765443211401110221034-34444------------ Q gi|255764490|r 158 GIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT------------ 224 (364) Q Consensus 158 ~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist------------ 224 (364) T Consensus 434 GsmG~glPaAiGA~lA----~p~r~Vv~i~GDGsf~mt-~qE-L~Ta~r~~Lpv~ivV~NN~~~G~ir~~q~~~~~~~~~ 507 (615) T PRK07418 434 GTMGFGMPAAMGVKVA----LPDEQVICIAGDASFLMN-IQE-LGTLAQYGIPVKTVIINNGWQGMVRQWQESFYDERYS 507 (615) T ss_pred CCHHHHHHHHHHHHHH----CCCCCEEEEECCHHHHHH-HHH-HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCC T ss_conf 6325788999999984----899968999844387664-999-9999996899689999798447999999986188767 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 43232148643577777631111210000233688754210245545465589831566 Q gi|255764490|r 225 SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 225 ~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 508 ~~~~~~~~pDf~~lA~a~G~~g~rV~--~~~eL~~Al~~Al~----~~gP~lidV~vd~ 560 (615) T PRK07418 508 ASNMLPGMPDFVKLAEAFGVKGMLIS--ERDQLKDAIAEALA----HDGPVLIDVHVRR 560 (615) T ss_pred CCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECC T ss_conf 34577899999999997799799979--99999999999980----8997899999888 |
|
| >PRK09124 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-12 Score=100.90 Aligned_cols=115 Identities=21% Similarity=0.325 Sum_probs=82.8 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC---------CC Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-34444---------43 Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT---------SV 226 (364) Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist---------~~ 226 (364) T Consensus 407 ~GsmG~glpaAIGa~~A----~p~r~Vv~i~GDG~f~m~-~~-EL~Ta~r~~lpv~ivV~NN~~~g~i~~~~~~~g~~~~ 480 (574) T PRK09124 407 HGSMANAMPQALGAQAA----HPGRQVVSLSGDGGFSML-MG-DFLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLTD 480 (574) T ss_pred CCCCCCHHHHHHHHHHH----CCCCCEEEEECCCHHHHH-HH-HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCC T ss_conf 66520057999999986----899948999886288754-99-9999999788958999978167899999996399887 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 232148643577777631111210000233688754210245545465589831566 Q gi|255764490|r 227 SRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 227 ~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 481 g~~l~~pDfa~lA~a~G~~g~rV~--~~~el~~al~~Al~----~~gP~lieV~vdp 531 (574) T PRK09124 481 GTDLHNPDFAAIANAAGITGIRVE--KASELDGALQRAFA----HDGPALVDVVTAK 531 (574) T ss_pred CCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECC T ss_conf 785899899999997799799979--99999999999981----8997999999798 |
|
| >PRK06456 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-12 Score=100.06 Aligned_cols=115 Identities=22% Similarity=0.315 Sum_probs=82.9 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCCC-----CC-- Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-3444443-----23-- Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTSV-----SR-- 228 (364) Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~~-----~~-- 228 (364) T Consensus 420 ~G~mG~glpaAiGA~lA----~pdr~Vv~i~GDG~f~m~-~-qEL~Ta~r~~lpv~ivV~NN~~yg~ir~~q~~~~~~~~ 493 (572) T PRK06456 420 MGTMGFGLPAAMGAKLA----RPDKVVVDLDGDGSFLMT-G-NNLATAVDEHIPIISVIFDNRTLGLVRQVQDLFFGRRI 493 (572) T ss_pred CCCCCCCCHHHHHHHHH----CCCCEEEEEECCHHHHCC-H-HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCC T ss_conf 66656520899999983----899829999875586303-9-99999999589938999968703799999998628864 Q ss_pred ---CC-CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf ---21-48643577777631111210000233688754210245545465589831566 Q gi|255764490|r 229 ---AS-AQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 229 ---~~-~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 494 ~~~~~~~~pdfa~iA~a~G~~g~~V~--~~~el~~al~~a~~----~~gP~lIeV~iD~ 546 (572) T PRK06456 494 VGVDYGPSPDFVKLAEAFGALGFNAT--TYEEIEKSIKTAIK----ENIPAVIRVPVDK 546 (572) T ss_pred CCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECC T ss_conf 45767999999999997899799969--99999999999982----8996999999888 |
|
| >PRK07710 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.2e-12 Score=99.50 Aligned_cols=116 Identities=23% Similarity=0.380 Sum_probs=82.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC---------- Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-34444---------- Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT---------- 224 (364) Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist---------- 224 (364) T Consensus 422 ~~G~mG~glpaAiGA~lA----~p~r~Vv~i~GDG~f~m~-~-qEL~Ta~r~~lpv~ivV~NN~~yg~ir~~q~~~~~~~ 495 (571) T PRK07710 422 GLGTMGFGLPAAIGAQIA----KPDELVVAIVGDAGFQMT-L-QELSVLKEHSLPVKVFILNNEALGMVRQWQEEFYNQR 495 (571) T ss_pred CCCCCCCCCHHHHHHHHH----CCCCEEEEEECCHHHHCC-H-HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCC T ss_conf 877656640899999973----899838999778056436-9-9999999959993899997871489999999862887 Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf -43232148643577777631111210000233688754210245545465589831566 Q gi|255764490|r 225 -SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 225 -~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 496 ~~~~~~~~~pdf~~~A~a~G~~g~~V~~--~~el~~Al~~Al~----~~gP~lIeV~vd~ 549 (571) T PRK07710 496 YSHSLLSCQPDFVALAEAYGIKGVRIDD--PLEAKEQLQHAIT----LQEPVVIDCRVLQ 549 (571) T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHHC----CCCCEEEEEEECC T ss_conf 7766678999999999977998999799--9999999999981----8996999999788 |
|
| >PRK08617 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-12 Score=99.68 Aligned_cols=115 Identities=23% Similarity=0.338 Sum_probs=81.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCC---------C Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-344444---------3 Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTS---------V 226 (364) Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~---------~ 226 (364) T Consensus 413 ~g~mG~glpaAIGA~lA----~p~~~Vv~i~GDGsf~m~-~qE-L~Ta~r~~lpi~iiV~NN~~yg~i~~~~~~~~~~~~ 486 (552) T PRK08617 413 MQTLGVALPWAIAAALV----RPGTKVVSVSGDGGFLFS-AME-LETAVRLKLNIVHIIWNDGHYDMVEFQEEMKYGRSS 486 (552) T ss_pred CCCCCCCHHHHHHHHHH----CCCCCEEEEECCHHHHHH-HHH-HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCC T ss_conf 66667517799999986----899828999885488621-999-999999588938999968952378899887528756 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 232148643577777631111210000233688754210245545465589831566 Q gi|255764490|r 227 SRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 227 ~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 487 g~d~~~~df~~lA~a~G~~g~~V~~--~~eL~~al~~A~~----~~gP~lIeV~vD~ 537 (552) T PRK08617 487 GVDFGPVDFVKYAESFGAKGLRVTS--PDELEPVLKEALA----TDGPVVIDIPVDY 537 (552) T ss_pred CCCCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHHH----CCCCEEEEEEECH T ss_conf 6859999999999977997999799--9999999999981----8995899999470 |
|
| >cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-12 Score=101.18 Aligned_cols=119 Identities=23% Similarity=0.262 Sum_probs=88.7 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC---------- Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-34444---------- Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT---------- 224 (364) Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist---------- 224 (364) T Consensus 51 ~~g~mG~glpaAiGAk~A----~Pdr~Vv~i~GDGsf~m~-~-~EL~Ta~r~~lpv~~vV~NN~~~g~i~~~q~~~~~~~ 124 (196) T cd02013 51 SFGNCGYALPAIIGAKAA----APDRPVVAIAGDGAWGMS-M-MEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNR 124 (196) T ss_pred CCCHHHHHHHHHHHHHHH----CCCCEEEEEECCCCHHHC-H-HHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCC T ss_conf 866476799999999972----789749999579734214-4-8999999978890699997805789999999870897 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 43232148643577777631111210000233688754210245545465589831566 Q gi|255764490|r 225 SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 225 ~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 125 ~~~~~~~~~df~~~A~a~G~~g~~V~--~~~el~~al~~Ala~~~~-~~P~lIeV~vD~ 180 (196) T cd02013 125 FVGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMAE-GKTTVIEIVCDQ 180 (196) T ss_pred CCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHHCCC-CCEEEEEEEECC T ss_conf 42453699986899997598789978--999999999999985679-986999999786 |
Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity. |
| >PRK05858 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-12 Score=100.63 Aligned_cols=114 Identities=20% Similarity=0.276 Sum_probs=81.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCCCC-------- Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-34444432-------- Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTSVS-------- 227 (364) Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~~~-------- 227 (364) T Consensus 407 ~G~mG~glpaAiGa~lA----~p~r~Vv~i~GDG~f~m~-~q-EL~Ta~r~~lpv~ivV~NN~~yg~~~~~~~~~~g~~~ 480 (543) T PRK05858 407 FGCLGSGPGYALAAKLA----RPQRQVVLLQGDGAFGFS-GM-EWDTLVRHNVPVVSVIGNNGIWGLEKHPMEALYGYSV 480 (543) T ss_pred CCCCCCCHHHHHHHHHH----CCCCCEEEEECCHHHHHH-HH-HHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHCCCCC T ss_conf 77744438899999984----899948999885698756-99-9999999786939999828625899999998639876 Q ss_pred --CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCC Q ss_conf --3214864357777763111121000023368875421024554546558983156 Q gi|255764490|r 228 --RASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTY 282 (364) Q Consensus 228 --~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ty 282 (364) T Consensus 481 ~~~~~p~~df~~lA~a~G~~g~~V~--~~~eL~~al~~A~~----~~~P~lIeV~~D 531 (543) T PRK05858 481 VAELRPGTRYDEVVRALGGHGELVA--VPAELRPALERAFA----SGLPYVVNVLTD 531 (543) T ss_pred CCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEEC T ss_conf 3345899999999987899799979--99999999999983----899099999968 |
|
| >CHL00099 ilvB acetohydroxyacid synthase large subunit | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-12 Score=99.87 Aligned_cols=114 Identities=18% Similarity=0.361 Sum_probs=82.3 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCC---------- Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-344444---------- Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTS---------- 225 (364) Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~---------- 225 (364) T Consensus 425 ~GsmG~glPaAiGA~lA~----p~r~Vv~i~GDGsf~mt-~q-EL~Tavr~~lpv~ivV~NN~~yg~ir~~q~~~~~~~~ 498 (588) T CHL00099 425 LGTMGYGLPAAIGAQVAH----PNEQVICISGDASFQMN-LQ-ELGTIAQYKLPIKIIIINNKWQGMVRQWQQAFYGERY 498 (588) T ss_pred CCCCCCCHHHHHHHHHHC----CCCCEEEEECCHHHHHH-HH-HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCC T ss_conf 755233189999999858----99818999754586321-99-9999999689958999979833699999998628876 Q ss_pred --CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCC Q ss_conf --323214864357777763111121000023368875421024554546558983156 Q gi|255764490|r 226 --VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTY 282 (364) Q Consensus 226 --~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ty 282 (364) T Consensus 499 ~~~~~~~~~pDf~~lA~a~G~~g~rV~--~~~el~~Al~~Al~----~~gP~lIeV~vd 551 (588) T CHL00099 499 SHSNMEEGAPDFVKLAEAFGIKGITIK--SRKDLKSKLQRALD----YDGPVLVDCQVR 551 (588) T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHC----CCCCEEEEEEEC T ss_conf 744576899899999997799899979--99999999999982----999789999978 |
|
| >PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-12 Score=99.69 Aligned_cols=116 Identities=21% Similarity=0.348 Sum_probs=83.9 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC---------- Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-34444---------- Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT---------- 224 (364) Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist---------- 224 (364) T Consensus 412 ~~G~mG~glpaAiGA~lA----~p~r~Vv~i~GDG~f~m~-~-qEL~Ta~r~~lpi~ivV~NN~~~g~i~~~q~~~~~~~ 485 (562) T PRK06048 412 GLGTMGYGFPAAIGAKVG----RPDKTVIDIAGDGSFQMN-S-QELATVVQNDIPVVSVILNNGYLGMVRQWQELFYDKR 485 (562) T ss_pred CCCCCCCCCHHHHHHHHH----CCCCCEEEEECCHHHHHH-H-HHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCC T ss_conf 776767750899999985----899958999861797665-9-9999999978792999996884089999999863887 Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf -43232148643577777631111210000233688754210245545465589831566 Q gi|255764490|r 225 -SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 225 -~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 486 ~~~~~~~~~~df~~lA~a~G~~g~rV~~--~~el~~al~~al----~~~gP~lIeV~vd~ 539 (562) T PRK06048 486 YSHTFIKGSVDFVKLAEAYGALGLRAEK--PSEVRPAIEEAV----ESGRPVVVDFIVEC 539 (562) T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHH----HCCCCEEEEEEECC T ss_conf 6755779999999999978997999699--999999999998----18997999999789 |
|
| >PRK08322 acetolactate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.3e-12 Score=99.41 Aligned_cols=116 Identities=19% Similarity=0.305 Sum_probs=85.1 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC---------C Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-34444---------4 Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT---------S 225 (364) Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist---------~ 225 (364) T Consensus 404 g~g~mG~glpaAIGa~la~----p~r~vv~i~GDGsf~~~~--qeL~Ta~r~~lpv~iiV~NN~~yg~i~~~q~~~~~~~ 477 (547) T PRK08322 404 ALATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMNS--QELETAVRLGLPLVVLILNDDAYGMIRWKQANMGFED 477 (547) T ss_pred CCCCCCCCHHHHHHHHHHC----CCCCEEEEECCHHHHHHH--HHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCC T ss_conf 8666656368999999868----899789997532876619--9999999968690899996894179999999855987 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 3232148643577777631111210000233688754210245545465589831566 Q gi|255764490|r 226 VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 226 ~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 478 ~~~~~~~pdf~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~vD~ 529 (547) T PRK08322 478 FGLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEALA----QPGVHVIDCPVDY 529 (547) T ss_pred CCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECH T ss_conf 6684999999999997799799969--99999999999982----8997899999366 |
|
| >cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.2e-12 Score=97.15 Aligned_cols=117 Identities=19% Similarity=0.305 Sum_probs=86.3 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC--------- Q ss_conf 76674667674325431001123344443310256654302456765443211401110221034-34444--------- Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT--------- 224 (364) Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist--------- 224 (364) T Consensus 45 ~~~g~mG~glpaAiGa~lA~----p~~~Vv~i~GDG~f~m~~-~E-L~Ta~~~~lpi~iiV~NN~~~g~i~~~q~~~~~~ 118 (177) T cd02010 45 NGLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFMMNS-QE-LETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGR 118 (177) T ss_pred CCCCHHHHHHHHHHHHHHHC----CCCEEEEEECCCCCEECC-HH-HHHHHHHCCCEEEEEEECCHHHHHHHHHHHHCCC T ss_conf 98636888999999999878----998599992898611066-68-8899972884039999898048999999986397 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 43232148643577777631111210000233688754210245545465589831566 Q gi|255764490|r 225 SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 225 ~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 119 ~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~~----~~gp~liev~vD~ 171 (177) T cd02010 119 DSGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERALA----ADGVHVIDCPVDY 171 (177) T ss_pred CCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECC T ss_conf 53461899998999998798799989--99999999999984----8995999999862 |
ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity. |
| >PRK06112 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.7e-12 Score=98.95 Aligned_cols=115 Identities=22% Similarity=0.264 Sum_probs=83.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCCC--------- Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-3444443--------- Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTSV--------- 226 (364) Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~~--------- 226 (364) T Consensus 439 ~g~mG~~lpaAiGa~lA----~p~r~Vv~i~GDGsf~m~-~~E-L~Ta~r~~lpv~vvV~NN~~~g~~~~~q~~~~g~~~ 512 (581) T PRK06112 439 LAGLGWGVPMAIGAKVA----RPGARVICLVGDGGFAHV-WAE-LETARRMGVPVTIVVLNNGILGFQKHAEEVKFGTHT 512 (581) T ss_pred CCCCCCHHHHHHHHHHH----CCCCCEEEEECCCHHHCC-HHH-HHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCC T ss_conf 66645206999999985----899968999886066435-999-999999787908999978631178899887508877 Q ss_pred -CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf -232148643577777631111210000233688754210245545465589831566 Q gi|255764490|r 227 -SRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 227 -~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 513 ~~~~~~~~df~~lA~a~G~~g~rV~--~~~eL~~Al~~A~~----~~gP~lIeV~vDp 564 (581) T PRK06112 513 DACHFAAVDHVAIARACGCDGVRVE--DPASLAQALAAAEA----APGPFLIEVMTDP 564 (581) T ss_pred CCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECC T ss_conf 6676899999999987898699979--99999999999984----8993999998688 |
|
| >PRK08155 acetolactate synthase catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.5e-12 Score=98.20 Aligned_cols=117 Identities=23% Similarity=0.367 Sum_probs=82.8 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCC-CCCCCC-----CCCC Q ss_conf 7667466767432543100112334444331025665430245676544321140111022103-434444-----4323 Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENN-QYAMGT-----SVSR 228 (364) Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN-~~aist-----~~~~ 228 (364) T Consensus 416 ~g~G~mG~glp~AiGaalA~----p~r~Vv~~~GDGsf~m~-~~e-L~Ta~r~~lpv~ivV~NN~~~g~i~~~q~~~~~~ 489 (564) T PRK08155 416 GGLGTMGFGLPAAIGAALAN----PDRKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEALGLVHQQQSLFYKQ 489 (564) T ss_pred CCCCCCCCCHHHHHHHHHHC----CCCCEEEEECCHHHHHH-HHH-HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCC T ss_conf 87656666278999999848----99828999741786430-999-9999995979089999699850778898874088 Q ss_pred -C-----CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf -2-----148643577777631111210000233688754210245545465589831566 Q gi|255764490|r 229 -A-----SAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 229 -~-----~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 490 ~~~~~~~~~~~df~~~A~a~G~~~~~V~~--~~el~~al~~al----~~~gp~lIev~id~ 544 (564) T PRK08155 490 RVFAATYPGKINFMQIAAGFGLETCDLNN--EADPQAALQEAI----NRPGPALIHVRIDA 544 (564) T ss_pred CCCCCCCCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHH----CCCCCEEEEEEECC T ss_conf 86554679998999999978997999699--999999999997----58994999999885 |
|
| >PRK08266 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-12 Score=98.75 Aligned_cols=118 Identities=31% Similarity=0.444 Sum_probs=86.2 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCC-------- Q ss_conf 76674667674325431001123344443310256654302456765443211401110221034-344444-------- Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTS-------- 225 (364) Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~-------- 225 (364) T Consensus 396 ~~~G~mG~glpaAiGa~lA~----p~~~Vv~i~GDG~f~~~-~~e-L~Ta~r~~lpi~ivV~NN~~yg~i~~~q~~~~~~ 469 (531) T PRK08266 396 GYQGTLGYGFPTALGAKVAN----PDKAVVSITGDGGFMFG-VQE-LATAVQHNIGVVTLVFNNSAYGNVRRDQKRTFDG 469 (531) T ss_pred CCCCCCCCCHHHHHHHHHHC----CCCCEEEEECCHHHHHH-HHH-HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCC T ss_conf 88776555168999999859----89968999843687341-999-9999997869189999688326899999987089 Q ss_pred --CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf --32321486435777776311112100002336887542102455454655898315668 Q gi|255764490|r 226 --VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRY 284 (364) Q Consensus 226 --~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~ 284 (364) T Consensus 470 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~v~~~ 524 (531) T PRK08266 470 RVVASDLVNPDFVKLAESFGVPAFRVD--SPEELRAALEAALA----LGGPYLIEVPVPRG 524 (531) T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECCC T ss_conf 656787999999999997899799979--99999999999982----89919999994799 |
|
| >PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-12 Score=99.83 Aligned_cols=116 Identities=24% Similarity=0.365 Sum_probs=81.5 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC-----CC-CC Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-34444-----43-23 Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT-----SV-SR 228 (364) Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist-----~~-~~ 228 (364) T Consensus 399 g~G~mG~glpaAiGA~lA~----p~r~Vv~i~GDGsf~m~-~-~EL~Ta~r~~lpv~ivV~NN~~~g~ir~~q~~~~~~~ 472 (548) T PRK08978 399 GLGTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMMN-V-QELGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDER 472 (548) T ss_pred CCCCCCCHHHHHHHHHHHC----CCCCEEEEECCHHHHHH-H-HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCC T ss_conf 7776553588999988748----99988999895076452-9-9999999958995899996884078999999762898 Q ss_pred C-----CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 2-----148643577777631111210000233688754210245545465589831566 Q gi|255764490|r 229 A-----SAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 229 ~-----~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 473 ~~~~~l~~~pdf~~lA~a~G~~g~rV~~--~~el~~al~~al----~~~~P~lIeV~vD~ 526 (548) T PRK08978 473 YSETDLSDNPDFVMLASAFGIPGQTITR--KDQVEAALDTLL----NSEGPYLLHVSIDE 526 (548) T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHH----HCCCCEEEEEEECC T ss_conf 7767778998999999977997999699--999999999998----18996999999787 |
|
| >PRK07092 benzoylformate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-12 Score=98.22 Aligned_cols=117 Identities=21% Similarity=0.346 Sum_probs=82.7 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCC-CCCCCC------- Q ss_conf 367667466767432543100112334444331025665430245676544321140111022103-434444------- Q gi|255764490|r 153 FYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENN-QYAMGT------- 224 (364) Q Consensus 153 ~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN-~~aist------- 224 (364) T Consensus 393 ~~~~~G~mG~~lpaAiGaalA----~p~~~vv~i~GDGsf~m~-~-~EL~Ta~r~~lpi~ivV~NN~~yg~i~~~~~~~~ 466 (521) T PRK07092 393 YTMASGGLGYGLPAAVGVALA----QPGRRVIGLIGDGSANYS-I-QALWSAAQLKLPVTFVILNNGRYGALRWFAPVFG 466 (521) T ss_pred EECCCCCCCCCHHHHHHHHHH----CCCCEEEEEECCHHHHHH-H-HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHC T ss_conf 855777644326899999983----999849999844598601-9-9999999968894899997871279999999846 Q ss_pred -CC--CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC Q ss_conf -43--2321486435777776311112100002336887542102455454655898315 Q gi|255764490|r 225 -SV--SRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364) Q Consensus 225 -~~--~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364) T Consensus 467 ~~~~~~~~l~~~df~~iA~a~G~~g~~V~t--~~eL~~al~~A~----~~~gP~lIeV~V 520 (521) T PRK07092 467 VRDVPGLDLPGLDFVALARGYGCEAVRVSD--AAELADALARAL----AADRPVLVEVEV 520 (521) T ss_pred CCCCCCCCCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHH----HCCCCEEEEEEC T ss_conf 899776749999999999977997999799--999999999998----389978999980 |
|
| >PRK06457 pyruvate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.9e-12 Score=97.27 Aligned_cols=115 Identities=22% Similarity=0.337 Sum_probs=83.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC---------C Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-34444---------4 Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT---------S 225 (364) Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist---------~ 225 (364) T Consensus 396 ~~g~mG~glpaaiGa~lA~-----~~~vv~i~GDGsf~m~-~~-EL~Ta~r~~lpv~ivV~NN~~yg~i~~~~~~~~~~~ 468 (549) T PRK06457 396 WLGSMGIGIPGAVGASFAS-----DRQVIAIVGDGGFAMT-MM-ELITAKKYSRPVKIIIYNNSKLGMIKFEQEVMGYPE 468 (549) T ss_pred CCCCCCCCHHHHHHHHHCC-----CCCEEEEECCCHHHCC-HH-HHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCC T ss_conf 8777666417899998658-----9943699666077514-89-999999958996899997981168999999727997 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 3232148643577777631111210000233688754210245545465589831566 Q gi|255764490|r 226 VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 226 ~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 469 ~g~~~~~~Df~~~A~a~G~~g~~V~--~~~el~~al~~A~~----~~gP~lIev~vdp 520 (549) T PRK06457 469 WGVDLYNPDFSKLAESVGIKGFRVE--DPNELEEAIEEFLN----TEGPAVLDAVVDP 520 (549) T ss_pred CCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHC----CCCCEEEEEEECC T ss_conf 7785899899999997799799979--99999999999981----8995999999689 |
|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-12 Score=100.01 Aligned_cols=119 Identities=22% Similarity=0.266 Sum_probs=87.0 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCC-CCCCCCCCC------- Q ss_conf 667466767432543100112334444331025665430245676544321140111022103-434444432------- Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENN-QYAMGTSVS------- 227 (364) Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN-~~aist~~~------- 227 (364) T Consensus 428 ~~G~mG~glpaAiGA~lA----~p~r~VV~i~GDG~f~m~-~-~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~q~~~~~~~ 501 (579) T TIGR03457 428 SFGNCGYAFPTIIGAKIA----APDRPVVAYAGDGAWGMS-M-NEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNR 501 (579) T ss_pred CCCCCCCHHHHHHHHHHH----CCCCCEEEEECCHHHHHH-H-HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCC T ss_conf 656654557999999984----899828999883787252-9-9999999978692899997864448999999870896 Q ss_pred ----CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf ----32148643577777631111210000233688754210245545465589831566 Q gi|255764490|r 228 ----RASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 228 ----~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 502 ~~g~~~~~~~dfa~~A~a~G~~g~~V~--~~~el~~Al~~Ala~~~~-g~P~lIdV~vd~ 558 (579) T TIGR03457 502 FVGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQAE-GKTTVIEIVCTR 558 (579) T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHCCCC-CCCEEEEEEECC T ss_conf 310236899998999997799799979--999999999999860899-996899999683 |
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur. |
| >PRK07449 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.3e-12 Score=98.36 Aligned_cols=115 Identities=21% Similarity=0.243 Sum_probs=79.4 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC--------C Q ss_conf 76674667674325431001123344443310256654302456765443211401110221034-34444--------4 Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT--------S 225 (364) Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist--------~ 225 (364) T Consensus 404 G~~Gi~G-~l~aAiGa~~a~-----~~~vv~i~GDGsf~~~--~~eL~Ta~~~~lpv~ivV~NN~gggi~~~l~~~~~~~ 475 (548) T PRK07449 404 GASGIDG-LLSTAAGVARAS-----GKPTVALIGDLSFLHD--LNGLLLLKQESGPLTIVVVNNNGGGIFELLPVPEEEV 475 (548) T ss_pred CCCCCCC-HHHHHHHHHHCC-----CCCEEEEECCHHHHHC--HHHHHHHHHCCCCCEEEEEECCCCCEEEECCCCCHHH T ss_conf 6567686-078999997578-----9988999554587604--5799999866999589999799998333310011354 Q ss_pred CCCCC---CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 32321---48643577777631111210000233688754210245545465589831566 Q gi|255764490|r 226 VSRAS---AQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 226 ~~~~~---~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 476 ~~~~~~~p~~~Df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~gP~lIeV~vD~ 530 (548) T PRK07449 476 FERFFGTPHGVDFEHAAAMYGLEYHRPE--TWAELEEALDDALR----TPGLTVIEVKTNR 530 (548) T ss_pred HHHHHCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEECCH T ss_conf 5343158899899999997799399859--99999999999983----8998899998983 |
|
| >PRK07586 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.4e-12 Score=96.99 Aligned_cols=112 Identities=26% Similarity=0.357 Sum_probs=77.5 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC----------C Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-34444----------4 Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT----------S 225 (364) Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist----------~ 225 (364) T Consensus 384 ~g~mG~glpaAiGa~lA----~P~r~Vv~i~GDG~f~m~-~~E-L~Ta~r~~lpii~vV~NN~~yg~i~~~~~~~g~~~~ 457 (514) T PRK07586 384 GGAIGQGLPLAVGAAVA----CPDRKVIALQGDGSAMYT-VQA-LWTQARENLDVTTVIFANRAYAILRGELARVGAGNP 457 (514) T ss_pred CCCCCCCHHHHHHHHHH----CCCCEEEEEECCCHHHCC-HHH-HHHHHHHCCCEEEEEEECCCHHHHHHHHHHHCCCCC T ss_conf 86314527899999975----888708999468103026-999-999999688908999978604789999998326777 Q ss_pred CC-------CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEEC Q ss_conf 32-------32148643577777631111210000233688754210245545465589831 Q gi|255764490|r 226 VS-------RASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEML 280 (364) Q Consensus 226 ~~-------~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ 280 (364) T Consensus 458 g~~~~~~~~~~~P~~Dfa~iA~a~G~~g~~V~~--~~el~~Al~~a~~----~~gP~lIev~ 513 (514) T PRK07586 458 GPRALDMLDLGDPDLDWVALAEGMGVPARRVTT--AEEFADALARALA----EPGPHLIEAV 513 (514) T ss_pred CCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHHC----CCCCEEEEEE T ss_conf 753001024789998999999978997999799--9999999999972----8996799997 |
|
| >PRK08979 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.4e-12 Score=97.59 Aligned_cols=117 Identities=21% Similarity=0.349 Sum_probs=84.5 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCCC-------- Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-3444443-------- Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTSV-------- 226 (364) Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~~-------- 226 (364) T Consensus 419 ~~g~mG~~lpaAiGa~lA~----p~r~Vv~i~GDGsf~m~-~qE-L~Tavr~~lpv~iiV~NN~~yg~i~~~q~~~~~g~ 492 (572) T PRK08979 419 GLGTMGFGLPAAMGVKMAM----PDETVVCVTGDGSIQMN-IQE-LSTALQYDIPVKIINLNNRFLGMVKQWQDMIYSGR 492 (572) T ss_pred CCCCCCCCHHHHHHHHHHC----CCCCEEEEECCHHHHHH-HHH-HHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCC T ss_conf 8753235408999999858----99968999882798777-999-99999978894899997970059999999860886 Q ss_pred ---CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf ---232148643577777631111210000233688754210245545465589831566 Q gi|255764490|r 227 ---SRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 227 ---~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 493 ~~~~~~~~~pdf~~~A~a~G~~g~rV~--~~~el~~Al~~Al~---~~~~p~lieV~vd~ 547 (572) T PRK08979 493 HSHSYMDSVPDFAKIAEAYGHVGMTIS--DPAELESGLAKALA---MKDRLVFVDINVDE 547 (572) T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH---CCCCEEEEEEEECC T ss_conf 676677899999999997799899979--99999999999985---76983999999899 |
|
| >PRK06466 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.7e-12 Score=97.42 Aligned_cols=117 Identities=21% Similarity=0.353 Sum_probs=82.3 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC-----C---- Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-34444-----4---- Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT-----S---- 225 (364) Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist-----~---- 225 (364) T Consensus 421 ~~G~mG~glpaAiGA~lA----~p~r~Vv~i~GDG~f~mt-~qE-L~Ta~r~~lpv~ivV~NN~~yg~ir~~q~~~~~~~ 494 (574) T PRK06466 421 GLGTMGFGLPAAMGVKLA----FPDQDVVCVTGEGSIQMN-IQE-LSTCLQYGLPVKIINLNNGALGMVRQWQDMNYEGR 494 (574) T ss_pred CCCCCCCCHHHHHHHHHH----CCCCCEEEEECHHHHHHH-HHH-HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCC T ss_conf 886423332999999985----899838999750698765-999-99999959995899997995169999999752886 Q ss_pred --CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf --3232148643577777631111210000233688754210245545465589831566 Q gi|255764490|r 226 --VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 226 --~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 495 ~~~~~~~~~pdf~~lA~a~G~~g~rv~~~--~el~~al~~al~~---~~~p~lIeV~vd~ 549 (574) T PRK06466 495 HSHSYMESLPDFVKLAEAYGHVGIRITDL--KDLKPKLEEAFAM---KDRLVFIDIYVDR 549 (574) T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEECCH--HHHHHHHHHHHHC---CCCCEEEEEEECC T ss_conf 66556689999999999779879997999--9999999999852---5992999999898 |
|
| >pfam02775 TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.3e-12 Score=98.42 Aligned_cols=113 Identities=27% Similarity=0.474 Sum_probs=83.8 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCC-------- Q ss_conf 76674667674325431001123344443310256654302456765443211401110221034-344444-------- Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTS-------- 225 (364) Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~-------- 225 (364) T Consensus 25 ~~~g~mG~~~p~AiGa~~a----~p~~~vi~i~GDG~f~~~~-~-el~Ta~~~~~~i~~iv~nN~~yg~~~~~q~~~~~~ 98 (150) T pfam02775 25 GGLGTMGYGLPAAIGAKLA----RPDRPVVAIAGDGGFQMNG-Q-ELATAVRYNLPITVVVLNNGGYGMTRGQQTPFGGK 98 (150) T ss_pred CCCCHHHHHHHHHHHHHHH----CCCCEEEEEECCCCHHCCC-C-HHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCC T ss_conf 9873232289999999997----8998499998897211134-3-79999984888568999764258889998874299 Q ss_pred ----CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEE Q ss_conf ----323214864357777763111121000023368875421024554546558983 Q gi|255764490|r 226 ----VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEM 279 (364) Q Consensus 226 ----~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~ 279 (364) T Consensus 99 ~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~----~~~gP~~ieV 150 (150) T pfam02775 99 RYSGPDGDLPPVDFAKLAEAYGAKGARVE--SPEELEEALKEAL----AHDGPALIDV 150 (150) T ss_pred CCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHH----HCCCCEEEEC T ss_conf 74565678888789999998598699978--9999999999998----2899989959 |
|
| >PRK08199 acetolactate synthase 2 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.5e-12 Score=96.52 Aligned_cols=117 Identities=17% Similarity=0.258 Sum_probs=82.5 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCC-----CC---- Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-3444-----44---- Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMG-----TS---- 225 (364) Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~ais-----t~---- 225 (364) T Consensus 407 ~~GsmG~glpaAiGa~la----~p~r~Vv~i~GDG~f~m~-~~-eL~Ta~~~~lpv~ivV~NN~~yg~i~~~q~~~~~~r 480 (553) T PRK08199 407 TSGSMGYGLPAAIAAKLL----YPERTVVAFAGDGCFLMN-GQ-ELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGR 480 (553) T ss_pred CCCCCCCHHHHHHHHHHH----CCCCEEEEEECCHHHHHH-HH-HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCC T ss_conf 898643228899999982----999818999886276541-99-999999978796899996895179999999746996 Q ss_pred -CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf -32321486435777776311112100002336887542102455454655898315668 Q gi|255764490|r 226 -VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRY 284 (364) Q Consensus 226 -~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~ 284 (364) T Consensus 481 ~~~~~l~~~df~~lA~a~G~~~~~V~--~~~el~~al~~a~~----~~gp~lIeV~vd~~ 534 (553) T PRK08199 481 VSGTDLTNPDFAALARAYGGHGERVE--RTEDFAPAFERALA----SGKPALIEIRIDPE 534 (553) T ss_pred CCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECCC T ss_conf 45586999899999997799799969--99999999999985----89959999997866 |
|
| >PRK07282 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=9e-12 Score=95.61 Aligned_cols=116 Identities=21% Similarity=0.345 Sum_probs=80.0 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCC-CCCCCC---------- Q ss_conf 667466767432543100112334444331025665430245676544321140111022103-434444---------- Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENN-QYAMGT---------- 224 (364) Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN-~~aist---------- 224 (364) T Consensus 416 ~~g~mG~glpaAiGA~lA----~p~r~Vv~i~GDG~f~m~~--qEL~Ta~~~~lpv~ivV~NN~~yg~i~~~q~~~~~~~ 489 (566) T PRK07282 416 GLGTMGFGIPAAIGAKIA----NPDKEVILFVGDGGFQMTN--QELAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEGR 489 (566) T ss_pred CCCCCCCCHHHHHHHHHH----CCCCCEEEEECCCHHHCCH--HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCC T ss_conf 877766612899999982----8999689996680554148--9999999958996899996883069999999860897 Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf -432321486435777776311112100002336887542102455454655898315668 Q gi|255764490|r 225 -SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRY 284 (364) Q Consensus 225 -~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~ 284 (364) T Consensus 490 ~~~~~~~~~pdf~~iA~a~G~~~~rv~~--~~eL~~aL-ea~~----~~~P~lIeV~vd~~ 543 (566) T PRK07282 490 TSESVFDTLPDFQLMAQAYGIKHYKFDN--PETLAQDL-EVIT----EDVPMLIEVDISRK 543 (566) T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEECC--HHHHHHHH-HHHC----CCCCEEEEEEECCC T ss_conf 6765668999999999977987999899--99999999-9877----89989999997899 |
|
| >cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-11 Score=92.93 Aligned_cols=117 Identities=24% Similarity=0.283 Sum_probs=82.9 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC---------- Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-34444---------- Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT---------- 224 (364) Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist---------- 224 (364) T Consensus 46 g~g~MG~~lPaAiGA~lA----~Pdr~Vv~i~GDG~f~m~~-~E-L~Tavr~~lpv~~vV~NN~~yg~i~~~Q~~~~~~~ 119 (205) T cd02003 46 GYSCMGYEIAAGLGAKLA----KPDREVYVLVGDGSYLMLH-SE-IVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSGS 119 (205) T ss_pred CCHHHHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCCH-HH-HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCC T ss_conf 740688999999999985----8998289997674111520-48-99999829954699998994289999999744676 Q ss_pred ---CC----------CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf ---43----------2321486435777776311112100002336887542102455454655898315668 Q gi|255764490|r 225 ---SV----------SRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRY 284 (364) Q Consensus 225 ---~~----------~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~ 284 (364) T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~Df~~~A~a~G~~g~~V~--~~~eL~~Al~~Al~----~~gP~vIev~vdP~ 186 (205) T cd02003 120 FGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAKA----SDRTTVIVIKTDPK 186 (205) T ss_pred CCCEEECCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECCC T ss_conf 331110145655556777789889999987497089938--88999999999996----89969999993799 |
viciae IolD. IolD plays an important role in myo-inositol catabolism. |
| >PRK07789 acetolactate synthase 1 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.2e-12 Score=95.84 Aligned_cols=116 Identities=22% Similarity=0.287 Sum_probs=80.7 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCC---------- Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-344444---------- Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTS---------- 225 (364) Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~---------- 225 (364) T Consensus 446 ~GsmG~glPaAiGA~lA----~P~r~Vv~i~GDGsf~mt-~qE-L~Tavr~~lpi~ivV~NN~~yg~Ir~~Q~~~~~~~~ 519 (612) T PRK07789 446 LGTMGYAVPAAMGAKVG----RPDKEVWAIDGDGCFQMT-NQE-LATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERY 519 (612) T ss_pred CCHHHHHHHHHHHHHHH----CCCCCEEEEECCHHHHHH-HHH-HHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCC T ss_conf 54488899999999986----899938999853686332-999-999999689948999968830689999998708875 Q ss_pred --CCCC---CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf --3232---148643577777631111210000233688754210245545465589831566 Q gi|255764490|r 226 --VSRA---SAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 226 --~~~~---~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 520 ~~~~~~~~~~~~PDf~~lA~a~G~~g~rv~--~~~el~~al~~Al~~---~d~P~lIdv~vdp 577 (612) T PRK07789 520 SNTDLNTGSHRIPDFVKLAEALGCVGLRCE--REEDVDAVIEKARAI---NDRPVVIDFVVGA 577 (612) T ss_pred CCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHC---CCCCEEEEEEECC T ss_conf 655467687889899999997798799979--999999999999855---9995899999898 |
|
| >PRK08273 pyruvate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.5e-12 Score=95.77 Aligned_cols=116 Identities=26% Similarity=0.434 Sum_probs=79.0 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHC-----CCHHHHHHHCCC-CCCCC--- Q ss_conf 766746676743254310011233444433102566543-02456765443211-----401110221034-34444--- Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAAN-QGQVYESFNIAALW-----NLNVIYVIENNQ-YAMGT--- 224 (364) Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~-eG~f~Ealn~A~~~-----~lPvifvvenN~-~aist--- 224 (364) T Consensus 412 g~~gsMG~glPaAIGA~lA----~P~r~Vv~i~GDG~f~M~~-~~E-L~Ta~ry~~~~~~lpvvvvV~NN~~~g~i~~~q 485 (597) T PRK08273 412 GGLATMGPAVPYAIAAKFA----HPDRPVIALVGDGAMQMNG-MAE-LITVAKYWRQWADPRLIVLVLNNRDLNQVTWEQ 485 (597) T ss_pred CCCCCCCCHHHHHHHHHHH----CCCCCEEEEECCCHHHHCH-HHH-HHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHH T ss_conf 8766645078999999985----8999589998161576350-889-999999764014899799998185157999999 Q ss_pred ------C---CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCC Q ss_conf ------4---323214864357777763111121000023368875421024554546558983156 Q gi|255764490|r 225 ------S---VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTY 282 (364) Q Consensus 225 ------~---~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ty 282 (364) T Consensus 486 ~~~~g~~~~~~~~~lp~~d~a~~A~a~G~~g~rV~--~~~el~~Al~~Al~----~~~P~lIeV~~D 546 (597) T PRK08273 486 RVMEGDPKFEASQQLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEALA----ADRPVVLEVKTD 546 (597) T ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEECC T ss_conf 98458877676456899999999997899799989--99999999999984----899789999718 |
|
| >cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.9e-12 Score=97.30 Aligned_cols=113 Identities=26% Similarity=0.381 Sum_probs=80.1 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCC---------- Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-344444---------- Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTS---------- 225 (364) Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~---------- 225 (364) T Consensus 48 ~g~mG~~~paAiGa~lA----~p~r~vv~i~GDG~f~m~-~~-eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~~~ 121 (178) T cd02002 48 GGGLGWGLPAAVGAALA----NPDRKVVAIIGDGSFMYT-IQ-ALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGP 121 (178) T ss_pred CCHHHHHHHHHHHHHHH----CCCCEEEEEECCCCCCCC-CH-HHEEEHHHCCCEEEEEEECCCHHHHHHHHHHHCCCCC T ss_conf 85376799999999985----989829999789731155-22-2100014179979999979830899999999737777 Q ss_pred -------CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC Q ss_conf -------32321486435777776311112100002336887542102455454655898315 Q gi|255764490|r 226 -------VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364) Q Consensus 226 -------~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364) T Consensus 122 ~~~~~~~~~~~~p~~d~~~iA~a~G~~~~~v~~--~~el~~al~~a~~----~~~p~vIev~V 178 (178) T cd02002 122 GENAPDGLDLLDPGIDFAAIAKAFGVEAERVET--PEELDEALREALA----EGGPALIEVVV 178 (178) T ss_pred CCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECC--HHHHHHHHHHHHH----CCCCEEEEEEC T ss_conf 766555556778998999999983994899789--9999999999983----89968999989 |
P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. |
| >PRK08527 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-11 Score=94.36 Aligned_cols=117 Identities=22% Similarity=0.341 Sum_probs=83.8 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCC-----CC-- Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-344444-----32-- Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTS-----VS-- 227 (364) Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~-----~~-- 227 (364) T Consensus 413 ~~G~mG~~lpaAiGa~lA~----p~r~vv~i~GDG~f~m~-~-~EL~Ta~r~~lpv~ivV~NN~~~g~i~~~q~~~~~~~ 486 (560) T PRK08527 413 GLGTMGYGLPAALGAKLAV----PEKVVINFTGDGSILMN-I-QELMTAVEYGIPVINIILNNNFLGMVRQWQTFFYEER 486 (560) T ss_pred CCCCCCCCHHHHHHHHHHC----CCCCEEEEECCHHHHHH-H-HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCC T ss_conf 8667787138999988748----99968999781798665-9-9999999968895899996995189999999861888 Q ss_pred ----CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf ----321486435777776311112100002336887542102455454655898315668 Q gi|255764490|r 228 ----RASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRY 284 (364) Q Consensus 228 ----~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~ 284 (364) T Consensus 487 ~~~~d~~~~pdf~~~A~a~G~~g~~V~--~~~el~~Al~~a~~----~~~p~lIeV~vd~~ 541 (560) T PRK08527 487 YSQTDLSTQPDFVKLAEGFGGIGFRVT--TKEEFDKALKQALK----SDKVSLIDVKIDRF 541 (560) T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECCC T ss_conf 776788899899999997899899969--99999999999981----89939999996798 |
|
| >PRK06882 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-11 Score=95.23 Aligned_cols=118 Identities=20% Similarity=0.375 Sum_probs=83.4 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC--------- Q ss_conf 76674667674325431001123344443310256654302456765443211401110221034-34444--------- Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT--------- 224 (364) Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist--------- 224 (364) T Consensus 418 ~~~GsmG~glpaAiGA~lA----~p~~~Vv~i~GDG~f~m~-~q-EL~Tavr~~lpv~ivV~NN~~yg~i~~~q~~~~~g 491 (574) T PRK06882 418 GGAGTMGFGLPAAIGVKFA----HPEGTVVCVTGDGSIQMN-IQ-ELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSG 491 (574) T ss_pred CCCCCCCCCHHHHHHHHHH----CCCCCEEEEECCHHHHHH-HH-HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCC T ss_conf 9874423223899999985----899858999882798655-99-99999996899589999798542999999986089 Q ss_pred CCC--CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 432--32148643577777631111210000233688754210245545465589831566 Q gi|255764490|r 225 SVS--RASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 225 ~~~--~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 492 ~~~~~~~~~~pDf~~lA~a~G~~g~rV~~--~~eL~~al~~Al~~---~~~p~lidV~iD~ 547 (574) T PRK06882 492 RHSQVYMNSLPDFAKLAEAYGHVGIQIDT--PDELEEKLTQAFSI---KDKLVFVDVNVDE 547 (574) T ss_pred CCCCCCCCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHHHC---CCCCEEEEEEECC T ss_conf 76755678999999999978997999799--99999999999855---7990999999898 |
|
| >PRK06276 acetolactate synthase catalytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-11 Score=94.35 Aligned_cols=116 Identities=21% Similarity=0.367 Sum_probs=83.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCCCC------C Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-34444432------3 Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTSVS------R 228 (364) Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~~~------~ 228 (364) T Consensus 417 g~GsmG~glpaAiGA~lA----~pdr~Vv~i~GDGsf~m~~--qEL~Tavr~~lpv~ivV~NN~~yg~i~~~q~~~~~~~ 490 (586) T PRK06276 417 GLGTMGFGFPAAIGAKVA----RPDANVIAVTGDGGFLMNS--QELATIAEYDIPVIVVIFDNRTLGMVYQWQNLYYGKR 490 (586) T ss_pred CCCCCCCCHHHHHHHHHH----CCCCCEEEEECCHHHHHHH--HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCC T ss_conf 877754547999999985----8999689998856875509--9999999978894899997872059999999862886 Q ss_pred CC-----CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 21-----48643577777631111210000233688754210245545465589831566 Q gi|255764490|r 229 AS-----AQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 229 ~~-----~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 491 ~~~~~~~~~pDf~~lA~a~G~~g~rV~--~~~el~~Al~~A~----~~~gP~lIeV~vDp 544 (586) T PRK06276 491 QSAVHLGETPDFVKLAESYGVDALRIE--KPGEINEALKTAI----NSGEPYLLDIIIDP 544 (586) T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHH----HCCCCEEEEEEECH T ss_conf 665667999999999997799799979--9999999999998----08997899999560 |
|
| >cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-11 Score=95.31 Aligned_cols=116 Identities=28% Similarity=0.460 Sum_probs=83.9 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCC---------C- Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-3444---------4- Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMG---------T- 224 (364) Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~ais---------t- 224 (364) T Consensus 48 ~~g~mG~~lpaAIGa~la~----p~r~vv~i~GDG~f~m~-~~E-L~Ta~~~~lpi~~iV~NN~~~g~i~~~q~~~~~~~ 121 (186) T cd02015 48 GLGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQMN-IQE-LATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGR 121 (186) T ss_pred CCCHHHHHHHHHHHHHHHC----CCCEEEEEECCCHHHCC-HHH-HHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCC T ss_conf 8735665999999999868----99818999767077503-599-99999866994799998970688999999972897 Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf -43232148643577777631111210000233688754210245545465589831566 Q gi|255764490|r 225 -SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 225 -~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 122 ~~~~~~~~~pd~~~iA~a~G~~~~~v~--~~~el~~al~~a~----~~~gP~lieV~idp 175 (186) T cd02015 122 YSHTTLDSNPDFVKLAEAYGIKGLRVE--KPEELEAALKEAL----ASDGPVLLDVLVDP 175 (186) T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHH----HCCCCEEEEEEECC T ss_conf 666567888776899997597699978--9999999999998----48997999999889 |
AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD. |
| >cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.3e-12 Score=95.84 Aligned_cols=117 Identities=25% Similarity=0.370 Sum_probs=84.2 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC--------- Q ss_conf 76674667674325431001123344443310256654302456765443211401110221034-34444--------- Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT--------- 224 (364) Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist--------- 224 (364) T Consensus 48 ~~~g~mG~glpaAiGa~la~----p~~~Vv~i~GDG~f~m~-~~E-l~Ta~~~~lpi~~vV~nN~~~g~i~~~q~~~~~~ 121 (178) T cd02014 48 GLLATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQP 121 (178) T ss_pred CCCCHHHHHHHHHHHHHHHC----CCCEEEEEECCCHHHCC-HHH-HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCC T ss_conf 88653778999999999848----99808999777067406-189-9989985898139999896158999999985799 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 43232148643577777631111210000233688754210245545465589831566 Q gi|255764490|r 225 SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 225 ~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 122 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gP~lieV~vdp 174 (178) T cd02014 122 EFGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEALA----ADGPVVIDVVTDP 174 (178) T ss_pred CCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEECCC T ss_conf 75253799988999997697079978--99999999999996----8997999998089 |
POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors. |
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.3e-11 Score=91.95 Aligned_cols=118 Identities=21% Similarity=0.245 Sum_probs=81.3 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCC----C------ Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-3444----4------ Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMG----T------ 224 (364) Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~ais----t------ 224 (364) T Consensus 425 ~~g~mG~glp~AigA~l~-----~~r~Vv~i~GDGsf~m~-~-~EL~Ta~r~~lpviivV~NN~g~~~~~~~~~~~~~~~ 497 (572) T PRK09259 425 TWGVMGIGMGYAIAAAVE-----TGKPVVAIEGDSAFGFS-G-MEIETICRYNLPVTVVIFNNGGIYRGDGVDPSGAGDP 497 (572) T ss_pred CCCCCCCCHHHHHHHHHC-----CCCCEEEEECCCCCCCC-H-HHHHHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCC T ss_conf 765566557999986446-----89958999758412577-8-9999999829991899993838999999986058877 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC Q ss_conf 43232148643577777631111210000233688754210245545465589831566887 Q gi|255764490|r 225 SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRG 286 (364) Q Consensus 225 ~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~g 286 (364) T Consensus 498 ~~~~~~~~~df~~lA~a~G~~g~~V~--~~~eL~~Al~~A~~----~~~P~lIeV~iDP~~~ 553 (572) T PRK09259 498 APTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAIA----SGKPTLINAVIDPAAG 553 (572) T ss_pred CCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECCCCC T ss_conf 74124789999999996899799979--99999999999983----8994899998289989 |
|
| >cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-11 Score=94.44 Aligned_cols=115 Identities=25% Similarity=0.382 Sum_probs=83.4 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC--------- Q ss_conf 76674667674325431001123344443310256654302456765443211401110221034-34444--------- Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT--------- 224 (364) Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist--------- 224 (364) T Consensus 45 ~~~g~mG~~lpaaiGa~lA~----p~~~Vv~i~GDG~f~m~-~-~EL~Ta~~~~lpi~~iV~nN~~~~~i~~~q~~~~~~ 118 (172) T cd02004 45 GTFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFGFS-G-MELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGL 118 (172) T ss_pred CCCCHHHHHHHHHHHHHHHC----CCCEEEEEECCCCHHCC-C-HHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCC T ss_conf 98764777999999999978----99849999779734024-0-788899984988599998288328999998987268 Q ss_pred --CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC Q ss_conf --432321486435777776311112100002336887542102455454655898315 Q gi|255764490|r 225 --SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364) Q Consensus 225 --~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364) T Consensus 119 ~~~~~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i 171 (172) T cd02004 119 GLPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRALA----SGKPALINVII 171 (172) T ss_pred CCCCEECCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEC T ss_conf 9874321899877899997598289978--99999999999995----89969999981 |
Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity. |
| >TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.2e-11 Score=93.15 Aligned_cols=116 Identities=18% Similarity=0.260 Sum_probs=79.4 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCC--CCCC----C Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-3444--4432----3 Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMG--TSVS----R 228 (364) Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~ais--t~~~----~ 228 (364) T Consensus 402 ~~G~mG~glPaAIGA~lA----~P~r~Vv~i~GDG~f~m~-~~E-L~Tavr~~lpi~~vV~NN~~yg~~r~~~~~~~~~~ 475 (539) T TIGR03393 402 LWGSIGYTLPAAFGAQTA----CPNRRVILLIGDGSAQLT-IQE-LGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYN 475 (539) T ss_pred CCCCCCCHHHHHHHHHHH----CCCCCEEEEECCHHHHHH-HHH-HHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCCC T ss_conf 764010178999999983----989948999840587763-999-99999819896899997882389988744776667 Q ss_pred CCCCCCHHHHHHHHHHHH----HHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 214864357777763111----1210000233688754210245545465589831566 Q gi|255764490|r 229 ASAQTNFSKRGVSFNIPG----MQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 229 ~~~~~~i~~ra~~~gi~~----~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 476 ~~~~~~~~~~a~a~g~~g~~~~~rV~--~~~eL~~al~~a~----~~~~P~lIeV~v~~ 528 (539) T TIGR03393 476 DIALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVA----AHERLSLIEVVLPK 528 (539) T ss_pred CCCCCCHHHHHHHCCCCCCCCEEEEC--CHHHHHHHHHHHH----HCCCCEEEEEECCC T ss_conf 78889978999976998862248868--9999999999998----67997899998574 |
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria. |
| >PRK06965 acetolactate synthase 3 catalytic subunit; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.5e-11 Score=91.80 Aligned_cols=116 Identities=19% Similarity=0.318 Sum_probs=81.7 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC-----C----- Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-34444-----4----- Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT-----S----- 225 (364) Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist-----~----- 225 (364) T Consensus 436 ~G~mG~glpaAiGA~lA----~p~r~Vv~i~GDGsf~mt-~qE-L~Ta~r~~lpi~iiV~NN~~yg~ir~~q~~~~~~~~ 509 (587) T PRK06965 436 LGTMGVGLPYAMGVKMA----HPDDDVVCITGEGSIQMC-IQE-LSTCLQYDTPVKIISLNNRYLGMVRQWQQIEYSKRY 509 (587) T ss_pred CCCCCHHHHHHHHHHHH----CCCCCEEEEECCHHHHHH-HHH-HHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCC T ss_conf 75400056899999985----899958999884588765-999-999999689928999958723599999998718976 Q ss_pred -CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf -3232148643577777631111210000233688754210245545465589831566 Q gi|255764490|r 226 -VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 226 -~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 510 ~~~~~~~~Pdf~~lA~a~G~~g~~V~--~~~eL~~al~~Al~---~~~~p~lidV~iDp 563 (587) T PRK06965 510 SHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALKEALR---LKDRTVFLDFQTDP 563 (587) T ss_pred CCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH---CCCCCEEEEEEECC T ss_conf 65577899899999997799899979--99999999999986---48980999999789 |
|
| >COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-11 Score=94.14 Aligned_cols=118 Identities=24% Similarity=0.389 Sum_probs=85.8 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCCCCCCCCC- Q ss_conf 76674667674325431001123344443310256654302456765443211401110221034-3444443232148- Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTSVSRASAQ- 232 (364) Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~~~~~~~~- 232 (364) T Consensus 405 ~~~GtMG~glPaAIGAkla~----P~r~Vv~i~GDG~F~m~-~-qEL~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~ 478 (550) T COG0028 405 GGLGTMGFGLPAAIGAKLAA----PDRKVVAIAGDGGFMMN-G-QELETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGG 478 (550) T ss_pred CCCCCCCCHHHHHHHHHHHC----CCCCEEEEECCCHHHCC-H-HHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHCCC T ss_conf 99861112489999988638----99828999702368507-9-899999986899799999784434508998873477 Q ss_pred --------CC-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf --------64-35777776311112100002336887542102455454655898315668 Q gi|255764490|r 233 --------TN-FSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRY 284 (364) Q Consensus 233 --------~~-i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~ 284 (364) T Consensus 479 ~~~~~~~~~~~f~klAea~G~~g~rv~--~~~el~~al~~al~----~~~p~lidv~id~~ 533 (550) T COG0028 479 RYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEALA----SDGPVLIDVVVDPE 533 (550) T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECCC T ss_conf 855111588768999997798259968--88999999999970----79988999983776 |
|
| >TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.9e-11 Score=89.22 Aligned_cols=116 Identities=24% Similarity=0.278 Sum_probs=80.3 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC--------C Q ss_conf 76674667674325431001123344443310256654302456765443211401110221034-34444--------4 Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT--------S 225 (364) Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist--------~ 225 (364) T Consensus 414 ~~~g~mG~glp~aigAa~~-----~~~~Vv~i~GDGsf~m~-~~E-L~Ta~r~~lpi~ivV~NN~g~~~~~~~~~~~~~~ 486 (554) T TIGR03254 414 GTWGVMGIGMGYAIAAAVE-----TGKPVVALEGDSAFGFS-GME-VETICRYNLPVCVVIFNNGGIYRGDDVNVVGADP 486 (554) T ss_pred CCCCCCCCCHHHHHHHHHC-----CCCEEEEEECCCCCCCC-HHH-HHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCC T ss_conf 8766657778999986427-----99818999758510304-899-9999996899589998780899999987428987 Q ss_pred C-CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 3-232148643577777631111210000233688754210245545465589831566 Q gi|255764490|r 226 V-SRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 226 ~-~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 487 ~~~~~~~~~df~~lA~a~G~~g~~V~--~~~eL~~al~~Al~----~~~p~lIeV~vDP 539 (554) T TIGR03254 487 APTVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEALA----SGKPTLINAVIDP 539 (554) T ss_pred CCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCEEEEEEEECC T ss_conf 75446789999999987899899979--99999999999982----7990999998389 |
In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase. |
| >cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.5e-11 Score=90.57 Aligned_cols=116 Identities=22% Similarity=0.332 Sum_probs=80.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCC-CCCCCCCC--CC----C Q ss_conf 67466767432543100112334444331025665430245676544321140111022103-43444443--23----2 Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENN-QYAMGTSV--SR----A 229 (364) Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN-~~aist~~--~~----~ 229 (364) T Consensus 49 ~g~mG~~lpaAiGa~lA----~p~~~Vv~i~GDG~f~m~-~~E-l~Ta~r~~l~vi~vV~NN~~~~~~r~~~~~~~~~~~ 122 (183) T cd02005 49 WGSIGYSVPAALGAALA----APDRRVILLVGDGSFQMT-VQE-LSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYND 122 (183) T ss_pred CCHHHHHHHHHHHHHHH----CCCCCEEEEECCHHHHHH-HHH-HHHHHHHCCCEEEEEEECCCCCEEEEECCCCCCCCC T ss_conf 50377899999999997----899847999567367620-889-999998299819999989943255751268656576 Q ss_pred CCCCCHHHHHHHHH----HHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 14864357777763----1111210000233688754210245545465589831566 Q gi|255764490|r 230 SAQTNFSKRGVSFN----IPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 230 ~~~~~i~~ra~~~g----i~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 123 ~~~~df~~~A~a~G~~~g~~g~rV~--~~~el~~al~~Al~---~~~~P~liev~vdp 175 (183) T cd02005 123 IANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALF---NRDKLSLIEVILPK 175 (183) T ss_pred CCCCCHHHHHHHHCCCCCCEEEEEC--CHHHHHHHHHHHHH---CCCCEEEEEEECCC T ss_conf 9999999999994786684289978--99999999999997---28982999997487 |
PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors. |
| >TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.5e-11 Score=89.68 Aligned_cols=114 Identities=23% Similarity=0.309 Sum_probs=78.3 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCCCC-----CCC Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-34444432-----321 Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTSVS-----RAS 230 (364) Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~~~-----~~~ 230 (364) T Consensus 402 ~g~mG~glpaAiGA~~a----~~~r~-v~i~GDG~f~m~~-~E-L~Tavr~~lpi~ivV~NN~~yg~ir~~q~~~~~~~l 474 (535) T TIGR03394 402 YAGMGFGVPAGIGAQCT----SGKRI-LTLVGDGAFQMTG-WE-LGNCRRLGIDPIVILFNNASWEMLRVFQPESAFNDL 474 (535) T ss_pred CHHHHHHHHHHHHHHHC----CCCCE-EEEEECCHHHHHH-HH-HHHHHHHCCCCEEEEEECCCCHHHEECCCCCCCCCC T ss_conf 11565678999899855----99956-9999471676059-99-999999399988999989942321201357777879 Q ss_pred CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCC-CEEEEECCCC Q ss_conf 4864357777763111121000023368875421024554546-5589831566 Q gi|255764490|r 231 AQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKG-PIIIEMLTYR 283 (364) Q Consensus 231 ~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~g-P~lie~~tyR 283 (364) T Consensus 475 ~~~df~~lA~a~G~~g~rV~--~~~eL~~al~~A~~----~~g~~~lIev~id~ 522 (535) T TIGR03394 475 DDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFA----TRGRFQLIEAMLPR 522 (535) T ss_pred CCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCCEEEEEECCC T ss_conf 99999999997799899979--89999999999984----58994899998288 |
A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase. |
| >cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-10 Score=88.12 Aligned_cols=110 Identities=23% Similarity=0.313 Sum_probs=75.4 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC---------CCCC Q ss_conf 4667674325431001123344443310256654302456765443211401110221034-34444---------4323 Q gi|255764490|r 159 IVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT---------SVSR 228 (364) Q Consensus 159 ~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist---------~~~~ 228 (364) T Consensus 52 GIdg~lstAiGaa~a~-----~~pvv~i~GDgsf~~d-~-~eL~t~~~~~~pv~ivV~NN~GggIf~~l~~~~~~~~~~~ 124 (175) T cd02009 52 GIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHD-L-NGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEFER 124 (175) T ss_pred CCCCHHHHHHHHHHCC-----CCCEEEEEECHHHHCC-H-HHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCE T ss_conf 5220899999999658-----9988999702686616-7-8999998669982999994898339999877503686431 Q ss_pred CCC---CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC Q ss_conf 214---86435777776311112100002336887542102455454655898315 Q gi|255764490|r 229 ASA---QTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364) Q Consensus 229 ~~~---~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364) T Consensus 125 ~~~tp~~~df~~lA~a~G~~~~~v~--~~~el~~al~~~~~----~~gp~lIEV~t 174 (175) T cd02009 125 LFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALA----QDGPHVIEVKT 174 (175) T ss_pred EECCCCCCCHHHHHHHCCCCEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEC T ss_conf 2157776689999998699779849--99999999999983----89989999968 |
SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity. |
| >cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-10 Score=87.66 Aligned_cols=118 Identities=22% Similarity=0.336 Sum_probs=83.2 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHCC-CHHHHHHHCCC-CCCCC Q ss_conf 22123676674667674325431001123344443310256654--3024567654432114-01110221034-34444 Q gi|255764490|r 149 TKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAA--NQGQVYESFNIAALWN-LNVIYVIENNQ-YAMGT 224 (364) Q Consensus 149 ~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~--~eG~f~Ealn~A~~~~-lPvifvvenN~-~aist 224 (364) T Consensus 34 ~~~~f~~-~GsMG~~~~~alG~al~~p----~-kVi~idGDGs~lM~lg~----LaTi~~~~~~nl~~ivlnN~~~~s~G 103 (157) T cd02001 34 RDGHFYM-LGSMGLAGSIGLGLALGLS----R-KVIVVDGDGSLLMNPGV----LLTAGEFTPLNLILVVLDNRAYGSTG 103 (157) T ss_pred CCCCEEE-ECHHHHHHHHHHHHHHCCC----C-CEEEEECCHHHHHCCCH----HHHHHHCCCCCEEEEEEECCCCCCCC T ss_conf 8886686-5401328899999985389----9-68999575588752461----99998638988799999797532467 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCC Q ss_conf 4323214864357777763111121000023368875421024554546558983156 Q gi|255764490|r 225 SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTY 282 (364) Q Consensus 225 ~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ty 282 (364) T Consensus 104 gQ~t~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~~l----~~~GP~fIeV~I~ 155 (157) T cd02001 104 GQPTPSSNVNLEAWAAACGYLVLSAP--LLGGLGSEFAGLL----ATTGPTLLHAPIA 155 (157) T ss_pred CCCCCCCCCCHHHHHHHCCCCEEEEC--CHHHHHHHHHHHH----CCCCCEEEEEEEC T ss_conf 85675446699999998698579958--9999999999998----4999989999956 |
Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors. |
| >PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.1e-09 Score=78.57 Aligned_cols=152 Identities=18% Similarity=0.142 Sum_probs=108.4 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHC Q ss_conf 210123443455677321112212367667466767432543100112334444331025665-4302456765443211 Q gi|255764490|r 129 LTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGA-ANQGQVYESFNIAALW 207 (364) Q Consensus 129 ~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~ 207 (364) T Consensus 40 vi~~~tGCssv~~~~~p~~--~~~~~~ihs~f~~aaa~a~Gi~~a~k~~~~~~~Vv~~~GDG~~~dIG~--~~l~ha~~R 115 (298) T PRK11865 40 VVAVATGCLEVITTPYPET--AWNVPWIHVAFENAAAVASGIERAVKALGKKVNVVAFGGDGGTADIGF--QALSGAMER 115 (298) T ss_pred EEEECCCCCCCCCCCCCCC--CCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHH--HHHHHHHHC T ss_conf 9997988477548767777--656862100320336789999999998457807999956852654217--889999982 Q ss_pred CCHHHHHHHCCC-CC-------CCCCCCCCC--------------CCCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHH Q ss_conf 401110221034-34-------444432321--------------48643577777631111-21000023368875421 Q gi|255764490|r 208 NLNVIYVIENNQ-YA-------MGTSVSRAS--------------AQTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKA 264 (364) Q Consensus 208 ~lPvifvvenN~-~a-------ist~~~~~~--------------~~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a 264 (364) T Consensus 116 n~~i~~iv~DNe~Y~nTGgQ~S~aTp~Ga~t~ttp~Gk~~~g~~~~kkdl~~ia~a~g~~YVA~~s~~~~~~l~~~i~kA 195 (298) T PRK11865 116 GHNIVYIMYDNEAYMNTGIQRSGSTPFGASTTTSPAGKYSRGEDRPKKDMPLIMAAHGIPYVATASIGYPEDFMKKVKKA 195 (298) T ss_pred CCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHH T ss_conf 99859999847121036886688997865310378986666666687689999998299889998257999999999999 Q ss_pred CCCCCCCCCCEEEEECCCCCCCCC Q ss_conf 024554546558983156688766 Q gi|255764490|r 265 VAYCRAHKGPIIIEMLTYRYRGHS 288 (364) Q Consensus 265 ~~~~r~~~gP~lie~~tyR~~gHs 288 (364) T Consensus 196 ~~~----~G~s~i~v~sPCp~gw~ 215 (298) T PRK11865 196 AEV----DGPAYIQVLQPCPTGWG 215 (298) T ss_pred HHC----CCCEEEEEECCCCCCCC T ss_conf 808----99879999788956688 |
|
| >cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-09 Score=82.33 Aligned_cols=114 Identities=23% Similarity=0.291 Sum_probs=84.0 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCC----CCCCC--- Q ss_conf 74667674325431001123344443310256654-302456765443211401110221034-3444----44323--- Q gi|255764490|r 158 GIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAA-NQGQVYESFNIAALWNLNVIYVIENNQ-YAMG----TSVSR--- 228 (364) Q Consensus 158 ~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~-~eG~f~Ealn~A~~~~lPvifvvenN~-~ais----t~~~~--- 228 (364) T Consensus 51 ~~mG~~~~~A~G~k~a----~p~~~Vv~~~GDG~~~~~G~--~~l~~av~~~~~it~iv~nN~~ygmTggQ~sp~~~~~~ 124 (178) T cd02008 51 TCMGASIGVAIGMAKA----SEDKKVVAVIGDSTFFHSGI--LGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKTL 124 (178) T ss_pred ECCCCCHHHHHHHHHH----CCCCCEEEEECCHHHHHHHH--HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCC T ss_conf 1357737899778987----89983799957627766319--99999998297959999948530013675589988877 Q ss_pred --CCCCCCHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC Q ss_conf --214864357777763111121-00002336887542102455454655898315 Q gi|255764490|r 229 --ASAQTNFSKRGVSFNIPGMQV-DGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364) Q Consensus 229 --~~~~~~i~~ra~~~gi~~~~v-DG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364) T Consensus 125 ~~~~~~~d~~~~a~a~G~~~v~~~~~~d~~~~~~~l~~A~~----~~G~s~I~v~~ 176 (178) T cd02008 125 TEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALA----VPGVSVIIAKR 176 (178) T ss_pred CCCCCCCCHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHC----CCCCEEEEEEC T ss_conf 78789879899999779999999784419999999999973----89978999948 |
IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA. |
| >cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-08 Score=73.57 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=107.6 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCC-CCHHHHHHHHHHH Q ss_conf 21012344345567732111221236766746676743254310011233--44443310256654-3024567654432 Q gi|255764490|r 129 LTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRR--SDKICVVCFGDGAA-NQGQVYESFNIAA 205 (364) Q Consensus 129 ~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~--~~~v~v~~~GDGa~-~eG~f~Ealn~A~ 205 (364) T Consensus 29 vi~~~iGCs~~~~~~~p~~~--~~~~~ih~~hgra~a~AtGik~a~~~l~~~~~~~Vv~~~GDG~~~dIG~-~-~l~haa 104 (235) T cd03376 29 VVVNPTGCLEVITTPYPYTA--WRVPWIHVAFENAAAVASGIEAALKALGRGKDITVVAFAGDGGTADIGF-Q-ALSGAA 104 (235) T ss_pred EEEECCCCCCCCCCCCCCCC--CCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHH-H-HHHHHH T ss_conf 99979864865487787776--4176054000146776661999999861389963999964744754207-8-899999 Q ss_pred HCCCHHHHHHHCCC-CCC-------CCCCCCCC--------------CCCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHH Q ss_conf 11401110221034-344-------44432321--------------48643577777631111-210000233688754 Q gi|255764490|r 206 LWNLNVIYVIENNQ-YAM-------GTSVSRAS--------------AQTNFSKRGVSFNIPGM-QVDGMDIRAVKATMD 262 (364) Q Consensus 206 ~~~lPvifvvenN~-~ai-------st~~~~~~--------------~~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~ 262 (364) T Consensus 105 ~Rn~~i~~iv~dN~~YgnTGGQ~S~tTp~G~~t~tsp~G~~~~g~~~~~kd~~~i~~a~g~~yVA~~~~~~~~~~~k~i~ 184 (235) T cd03376 105 ERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVK 184 (235) T ss_pred HCCCCEEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHH T ss_conf 82998399998882100368966989989863112688855778777886999999870995899974589999999999 Q ss_pred HHCCCCCCCCCCEEEEECCCCCCCCCCC Q ss_conf 2102455454655898315668876667 Q gi|255764490|r 263 KAVAYCRAHKGPIIIEMLTYRYRGHSMS 290 (364) Q Consensus 263 ~a~~~~r~~~gP~lie~~tyR~~gHs~~ 290 (364) T Consensus 185 ~A~~~----~G~s~i~v~spCpt~w~~~ 208 (235) T cd03376 185 KALSI----EGPAYIHILSPCPTGWRFD 208 (235) T ss_pred HHHCC----CCCEEEEEECCCCCCCCCC T ss_conf 99728----9988999964796667959 |
PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity. |
| >cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-08 Score=75.42 Aligned_cols=121 Identities=28% Similarity=0.383 Sum_probs=85.5 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCC------ Q ss_conf 2367667466767432543100112334444331025665-4302456765443211401110221034-3444------ Q gi|255764490|r 152 GFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGA-ANQGQVYESFNIAALWNLNVIYVIENNQ-YAMG------ 223 (364) Q Consensus 152 ~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~lPvifvvenN~-~ais------ 223 (364) T Consensus 45 ~~~~~~~~hG~a~~~A~G~k~a----~p~~~Vva~~GDG~~~~iG~--~~l~~A~~rn~~i~~iv~DN~~ygmTGgQ~sp 118 (193) T cd03375 45 NTYGFHTLHGRALAVATGVKLA----NPDLTVIVVSGDGDLAAIGG--NHFIHAARRNIDITVIVHNNQIYGLTKGQASP 118 (193) T ss_pred HCCCCCHHHCCCHHHHHHHHHH----CCCCEEEEEEECCHHHHCCH--HHHHHHHHHCCCEEEEEECCCCEECCCCCCCC T ss_conf 1586520211608888679875----99973999970655764561--88999998099749999858404423683488 Q ss_pred -CCCCCC---------CCCCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCC Q ss_conf -443232---------148643577777631111-21000023368875421024554546558983156 Q gi|255764490|r 224 -TSVSRA---------SAQTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTY 282 (364) Q Consensus 224 -t~~~~~---------~~~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ty 282 (364) T Consensus 119 tT~~g~~t~ttp~G~~~~~~d~~~ia~a~G~~yVa~~~~~~~~~l~~~ik~Al~----~~G~s~I~v~sp 184 (193) T cd03375 119 TTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ----HKGFSFVEVLSP 184 (193) T ss_pred CCCCCCEECCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHH----CCCCEEEEEECC T ss_conf 988985541367787657889999998759987999657999999999999980----899889999889 |
In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity. |
| >cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.5e-09 Score=76.22 Aligned_cols=115 Identities=24% Similarity=0.378 Sum_probs=77.8 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHCCCH-HHHHHHCCC-CCCCCC Q ss_conf 2123676674667674325431001123344443310256654--302456765443211401-110221034-344444 Q gi|255764490|r 150 KNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAA--NQGQVYESFNIAALWNLN-VIYVIENNQ-YAMGTS 225 (364) Q Consensus 150 ~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~--~eG~f~Ealn~A~~~~lP-vifvvenN~-~aist~ 225 (364) T Consensus 35 ~~~F~~-lGtMG~~~p~aiGaa~a~p-----~kVi~i~GDGs~lM~~ge----L~Ti~~~~~~n~~~ivlnN~~~g-~~g 103 (179) T cd03372 35 PLNFYM-LGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLLMNLGA----LATIAAEKPKNLIIVVLDNGAYG-STG 103 (179) T ss_pred CCCEEE-ECHHHHHHHHHHHHHHCCC-----CCEEEEECCHHHHHHHHH----HHHHHHHCCCCEEEEEEECCCCC-CCC T ss_conf 776673-1344508899999986579-----968999678046543669----99999726897899998388755-413 Q ss_pred CCCC--CCCCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 3232--148643577777631111-210000233688754210245545465589831566 Q gi|255764490|r 226 VSRA--SAQTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 226 ~~~~--~~~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 104 ~q~t~~~~~~Df~~iA~a~G~~~~~~v~--~~e~l~~~l~~~~------~gP~~iev~i~~ 156 (179) T cd03372 104 NQPTHAGKKTDLEAVAKACGLDNVATVA--SEEAFEKAVEQAL------DGPSFIHVKIKP 156 (179) T ss_pred CCCCCCCCCCCHHHHHHHCCCCEEEEEC--CHHHHHHHHHHHC------CCCEEEEEEECC T ss_conf 5036667898999999987997399989--9999999999847------999999999879 |
M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors. |
| >PRK06163 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.8e-08 Score=74.44 Aligned_cols=119 Identities=15% Similarity=0.201 Sum_probs=79.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHCCCH-HHHHHHCCCCCCCC Q ss_conf 122123676674667674325431001123344443310256654--302456765443211401-11022103434444 Q gi|255764490|r 148 STKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAA--NQGQVYESFNIAALWNLN-VIYVIENNQYAMGT 224 (364) Q Consensus 148 ~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~--~eG~f~Ealn~A~~~~lP-vifvvenN~~aist 224 (364) T Consensus 48 d~~~nFy~-vGsMG~as~iaLG~Ala~----p~k~Vi~iDGDGs~LM~mGs----LaTi~~~~p~Nl~hIvlnN~~~~st 118 (202) T PRK06163 48 QRPQNFYM-LGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLLMQLGA----LGTIAALAPKNLTIIVMDNGVYQIT 118 (202) T ss_pred CCCCCEEE-ECCCCCHHHHHHHHHHHC----CCCEEEEEECCHHHHHCHHH----HHHHHHHCCCCEEEEEECCCCCCCC T ss_conf 87677677-522101889999999878----99828999476688735688----9999971788569999869640016 Q ss_pred CCCCC-C-CCCCHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC Q ss_conf 43232-1-486435777776311-112100002336887542102455454655898315 Q gi|255764490|r 225 SVSRA-S-AQTNFSKRGVSFNIP-GMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364) Q Consensus 225 ~~~~~-~-~~~~i~~ra~~~gi~-~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364) T Consensus 119 GgQ~T~~~~~vDf~~iA~a~Gy~~~~~v~~--~~el----~~~l~~~l~~~GP~fi~Vki 172 (202) T PRK06163 119 GGQPTLTSQTVDVVAIARGAGLENSHWAAD--EAHF----EALVDQALSGPGPSFIAVRI 172 (202) T ss_pred CCCCCCCCCCCCHHHHHHHCCCCCEEEECC--HHHH----HHHHHHHHHCCCCEEEEEEE T ss_conf 874577678879999999779985799779--9999----99999998389989999993 |
|
| >TIGR02720 pyruv_oxi_spxB pyruvate oxidase; InterPro: IPR014092 Members of this family are examples of pyruvate oxidase (1 | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-07 Score=69.10 Aligned_cols=147 Identities=21% Similarity=0.285 Sum_probs=104.4 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCC-CCCC-CCCCC------- Q ss_conf 67466767432543100112334444331025665430245676544321140111022103-4344-44432------- Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENN-QYAM-GTSVS------- 227 (364) Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN-~~ai-st~~~------- 227 (364) T Consensus 403 TS~LFATMG~GvPGAiAAK~~YPdRqvfnl~GDGAf~--M~~~d~~t~V~Y~LPviNiVfSn~~lgFIk~eq~dd~~~~l 480 (577) T TIGR02720 403 TSALFATMGVGVPGAIAAKLNYPDRQVFNLAGDGAFS--MVMQDLLTQVKYHLPVINIVFSNETLGFIKDEQEDDSQQPL 480 (577) T ss_pred CCHHHHHHCCCCHHHHHHHCCCCCCCEEECCCCCHHH--HCCHHHHHHCCCCCCEEEEEECCCCCCCCHHHHCCCCCCCE T ss_conf 2212445402124788720578622222034520244--11077886300048678787447632550212045788871 Q ss_pred --CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCC----CCCCCCCCCHHHH Q ss_conf --3214864357777763111121000023368875421024554546558983156688766----6787667899999 Q gi|255764490|r 228 --RASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHS----MSDPANYRTREEI 301 (364) Q Consensus 228 --~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs----~~D~~~YR~~~Ei 301 (364) T Consensus 481 ~Gvdl~d~DfAKiAeG~G~~Gf~V~~--~~~l~~~~e~A~~~~k~-~~pVlIDa~iT~~rPLp~E~L~lD~~-~~s~~~i 556 (577) T TIGR02720 481 FGVDLTDADFAKIAEGVGAVGFRVEK--IEQLKAVFEEAKKELKE-GKPVLIDAKITDKRPLPVEVLELDPA-LSSEAKI 556 (577) T ss_pred EEECCCCCCHHHHHCCCCEEEEEECC--HHHHHHHHHHHHHHHHC-CCCEEEEEEECCCCCCCEEEEECCCC-CCCHHHH T ss_conf 52034546614332364404787175--87889999999999847-89789987872888786757743887-6878899 Q ss_pred HHHHHHCC Q ss_conf 99898389 Q gi|255764490|r 302 NEMRSNHD 309 (364) Q Consensus 302 ~~~~~~~D 309 (364) T Consensus 557 ~aFk~kYd 564 (577) T TIGR02720 557 EAFKEKYD 564 (577) T ss_pred HHHHHHCC T ss_conf 99862004 |
2.3.3 from EC), an enzyme with FAD and TPP as cofactors that catalyses the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase (1.2.2.2 from EC) as in Escherichia coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.. |
| >TIGR02418 acolac_catab acetolactate synthase, catabolic; InterPro: IPR012782 Acetolactate synthase is a thiamin pyrophosphate-dependent enzyme that combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2 | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.1e-08 Score=70.60 Aligned_cols=119 Identities=23% Similarity=0.390 Sum_probs=84.9 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH-C-CCCCCC----- Q ss_conf 123676674667674325431001123344443310256654302456765443211401110221-0-343444----- Q gi|255764490|r 151 NGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIE-N-NQYAMG----- 223 (364) Q Consensus 151 ~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvve-n-N~~ais----- 223 (364) T Consensus 409 R~lLiSNGmQ--TlGVALPWAI~AaLlrP~~KVVSVSGDGGFLfSs-mE-LETAVRLk~nIvHIiWnDn~~YnMV~fQE~ 484 (553) T TIGR02418 409 RHLLISNGMQ--TLGVALPWAIGAALLRPNTKVVSVSGDGGFLFSS-ME-LETAVRLKLNIVHIIWNDNNKYNMVEFQEE 484 (553) T ss_pred CEEEEECCCC--HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH-HH-HHHHHHHHCCEEEEEEECCCCCCHHHHHHH T ss_conf 4024335750--3111218999999738897589987283120025-78-899998408948999704899766789776 Q ss_pred CCCC-CC----CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--CCCCCCCCCCEEEEE Q ss_conf 4432-32----14864357777763111121000023368875421--024554546558983 Q gi|255764490|r 224 TSVS-RA----SAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKA--VAYCRAHKGPIIIEM 279 (364) Q Consensus 224 t~~~-~~----~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a--~~~~r~~~gP~lie~ 279 (364) T Consensus 485 ~KY~GR~sGVdFGpvDfvkYAESFGA~GlrV~~~d--~L~~tLr~Ali~~----~eGPvvvdi 541 (553) T TIGR02418 485 MKYKGRSSGVDFGPVDFVKYAESFGAKGLRVESPD--ELEPTLRQALIME----VEGPVVVDI 541 (553) T ss_pred HCCCCCCCCEEECCCCCEEECCCCCCCCCCCCCHH--HHHHHHHHHCEEC----CCCCEEEEE T ss_conf 32355201310066050210102484324328978--9999987412022----788889984 |
It exists in two distinct forms that have different properties, though they are clearly related , . The biosynthetic form, found in plants, fungi and bacteria, is involved in the biosynthesis of branched-chain amino acids and contains non-catalytic FAD. The catabolic form is found only in some bacteria, participates in butanediol fermentation, and does not contain FAD. This entry represents the catabolic form of acetolactate synthase, generally found in species that posses acetolactate decarboxylase, which is often encoded in the same operon. The enzyme is thought to be a homotetramer, though this has not conclusively been shown. Each monomer consists of three distinct domains, designated, starting from the N-terminus, as alpha, beta and gamma . The core of the alpha and gamma domains is a six-stranded parallel beta sheet surrounded by alpha helices, while the the beta domain forms a double Rossman fold. The thiamin pyrophosphate cofactor has an unusual conformation that has not been seen in other enzymes using this cofactor, including the biosynthetic form of acetolactate synthase. The active site is located in a funnel at the dimer interface, bordered by residues from all three domains.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding. |
| >cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.8e-07 Score=65.27 Aligned_cols=152 Identities=14% Similarity=0.149 Sum_probs=100.1 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCC-CCCHHHHHHH Q ss_conf 101234434556773211122123676674667674325431001123-------34444331025665-4302456765 Q gi|255764490|r 130 TGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYR-------RSDKICVVCFGDGA-ANQGQVYESF 201 (364) Q Consensus 130 ~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~-------~~~~v~v~~~GDGa-~~eG~f~Eal 201 (364) T Consensus 32 iv~~iGCs~~~~~~~~~~--~~~~~~ih~~hgra~a~AtGik~a~~~~~~~~~~~~~~~~Vv~~~GDGd~~~IG~--~~l 107 (237) T cd02018 32 IANSTGCSSVYASTAPFN--SWAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIGF--GAL 107 (237) T ss_pred EEECCCCCCCCCCCCCCC--CCCCCEEHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHCCH--HHH T ss_conf 996876686426646566--6477522001233188899999999873111101257886899955735765007--889 Q ss_pred HHHHHCCCHHHHHHHCCC-CCC-------CCCC---------CCCCCCCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHH Q ss_conf 443211401110221034-344-------4443---------232148643577777631111-2100002336887542 Q gi|255764490|r 202 NIAALWNLNVIYVIENNQ-YAM-------GTSV---------SRASAQTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDK 263 (364) Q Consensus 202 n~A~~~~lPvifvvenN~-~ai-------st~~---------~~~~~~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~ 263 (364) T Consensus 108 ~ha~~Rn~~i~~I~~dN~~Yg~TggQ~SptTp~G~~T~ttp~G~~~~~~~~~~ia~~~g~~yVAr~s~~~~~~~~k~~~~ 187 (237) T cd02018 108 SHSLFRGEDITVIVLDNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKE 187 (237) T ss_pred HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHH T ss_conf 99998289839999888134467884798998987130168997678879999998659958999855999999999999 Q ss_pred HCCCCCCCCCCEEEEECCCCCCCCC Q ss_conf 1024554546558983156688766 Q gi|255764490|r 264 AVAYCRAHKGPIIIEMLTYRYRGHS 288 (364) Q Consensus 264 a~~~~r~~~gP~lie~~tyR~~gHs 288 (364) T Consensus 188 A~~~---~~G~s~v~vlspCpt~w~ 209 (237) T cd02018 188 AISR---TDGPTFIHAYTPCITEWG 209 (237) T ss_pred HHHC---CCCCEEEEEECCCCCCCC T ss_conf 9865---999889999748988989 |
Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors. |
| >COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.9e-06 Score=61.45 Aligned_cols=154 Identities=21% Similarity=0.217 Sum_probs=97.8 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCC-------C Q ss_conf 36766746676743254310011233444433102566-54302456765443211401110221034-344-------4 Q gi|255764490|r 153 FYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDG-AANQGQVYESFNIAALWNLNVIYVIENNQ-YAM-------G 223 (364) Q Consensus 153 ~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDG-a~~eG~f~Ealn~A~~~~lPvifvvenN~-~ai-------s 223 (364) T Consensus 65 ~~~~hs~~gra~a~atGik~A~~~l----~Viv~gGDG~~~dIG~~--~l~ha~~Rn~dit~iv~DNevYgnTggQ~S~t 138 (294) T COG1013 65 PPWVHSLHGRAAAVATGIKLANPAL----SVIVIGGDGDAYDIGGN--HLIHALRRNHDITYIVVDNEVYGNTGGQASPT 138 (294) T ss_pred CCCEEECCCCCHHHHHHHHHHHHCC----EEEEEECCCHHHHCCHH--HHHHHHHCCCCEEEEEECCEECCCCCCCCCCC T ss_conf 8723200256234577799751077----49999056077541016--77899970798599997770045678735889 Q ss_pred CCCCCCCC----------CCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCC Q ss_conf 44323214----------8643577777631111-210000233688754210245545465589831566887666787 Q gi|255764490|r 224 TSVSRASA----------QTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDP 292 (364) Q Consensus 224 t~~~~~~~----------~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D~ 292 (364) T Consensus 139 Tp~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~~A~~~----~Gps~I~v~sPC~t~---~~~ 211 (294) T COG1013 139 TPKGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEH----KGPSFIDVLSPCPTG---NGR 211 (294) T ss_pred CCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHC----CCCEEEEEECCCCCC---CCC T ss_conf 8688760336898776787799999987699769997035989999999999856----797699996688677---875 Q ss_pred CCCCCHHHHHHHH-HHCCHHHHHHHHHH Q ss_conf 6678999999989-83893799999999 Q gi|255764490|r 293 ANYRTREEINEMR-SNHDPIEQVRKRLL 319 (364) Q Consensus 293 ~~YR~~~Ei~~~~-~~~DPI~~~~~~L~ 319 (364) T Consensus 212 ~~~~~~~~~~~ave~~~~pl~~~~~~~~ 239 (294) T COG1013 212 NTMKTIEEAKLAVETGYWPLYRYEPGKA 239 (294) T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCH T ss_conf 5017999999998638751023377533 |
|
| >PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.8e-07 Score=63.93 Aligned_cols=147 Identities=20% Similarity=0.187 Sum_probs=95.4 Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH-HHHHHHCCCCCCCCCCCC Q ss_conf 6746676743254310011233-------44443310256654302456765443211401-110221034344444323 Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRR-------SDKICVVCFGDGAANQGQVYESFNIAALWNLN-VIYVIENNQYAMGTSVSR 228 (364) Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~-------~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lP-vifvvenN~~aist~~~~ 228 (364) T Consensus 191 TvSmGLGp~~aiyqArf~rYl~~rgl~~~~~~kvwaflGDgEmDEpes~gai~~A~re~LdNlifVVncNlQrLDGpVrG 270 (886) T PRK09405 191 TVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRG 270 (886) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC T ss_conf 50625107899999999999984599777887389995365557534688999999840586699997775457886268 Q ss_pred CCC-CCCHHHHHHHHHHH-------------------------------------------------------------- Q ss_conf 214-86435777776311-------------------------------------------------------------- Q gi|255764490|r 229 ASA-QTNFSKRGVSFNIP-------------------------------------------------------------- 245 (364) Q Consensus 229 ~~~-~~~i~~ra~~~gi~-------------------------------------------------------------- 245 (364) T Consensus 271 ngkIIqELE~~FrgAGWnVIkviwG~~wd~Lfa~d~~g~L~~~m~e~~DgeyQ~~~~~~Gay~Re~ffg~~pel~~LV~~ 350 (886) T PRK09405 271 NGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQRMNETVDGDYQTYKAKDGAYVREHFFGKYPETAALVAD 350 (886) T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHH T ss_conf 51799999998854796189982151689998337856699999984037888784187999999872899789999851 Q ss_pred -------HHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCC---CCCC---C-CCCCHHHHHHHHH Q ss_conf -------1121000023368875421024554546558983156688766---6787---6-6789999999898 Q gi|255764490|r 246 -------GMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHS---MSDP---A-NYRTREEINEMRS 306 (364) Q Consensus 246 -------~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs---~~D~---~-~YR~~~Ei~~~~~ 306 (364) T Consensus 351 lSD~ei~~L~rGGHD~~KvyaAy~~A~~~---kgrPTVILA~TVKGyGlg~ageg~N~aHQ~Kkl~~e~l~~fRd 422 (886) T PRK09405 351 MSDDDIWALNRGGHDPRKVYAAYKAAVEH---KGQPTVILAKTIKGYGMGEAGEGKNIAHQVKKLDLDDLKHFRD 422 (886) T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHC---CCCCEEEEEEEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHH T ss_conf 89999998652699989999999999736---8998599988764266674444542011003599999999999 |
|
| >KOG1185 consensus | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.3e-06 Score=62.59 Aligned_cols=112 Identities=24% Similarity=0.359 Sum_probs=78.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCC-C-CCCCCCCCC------------- Q ss_conf 7432543100112334444331025665430245676544321140111022103-4-344444323------------- Q gi|255764490|r 164 VSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENN-Q-YAMGTSVSR------------- 228 (364) Q Consensus 164 ~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN-~-~aist~~~~------------- 228 (364) T Consensus 432 MGVG~Gfalaaa~~~P~~~V~~veGDsaFGfSaM-E-~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~e~~~~~~~p~ 509 (571) T KOG1185 432 MGVGLGFALAAALAAPDRKVVCVEGDSAFGFSAM-E-LETFVRYKLPVVIVVGNNNGIYGLDDDGWKQISEQDPTLDLPP 509 (571) T ss_pred CCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHH-H-HHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCC T ss_conf 5545157778776279973899964765571056-5-8888871687699996288634667644888851685568984 Q ss_pred --CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCC Q ss_conf --214864357777763111121000023368875421024554546558983156 Q gi|255764490|r 229 --ASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTY 282 (364) Q Consensus 229 --~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ty 282 (364) T Consensus 510 ~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q---~~~~psvINVlI~ 560 (571) T KOG1185 510 TALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQ---DTDKPSVINVLIG 560 (571) T ss_pred CCCCCCCCHHHHHHHCCCCCEEEC--CHHHHHHHHHHHHH---CCCCCEEEEEEEC T ss_conf 012443569999987188863647--89999999999985---4799768999866 |
|
| >TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase | Back alignment and domain information |
|---|
Probab=98.09 E-value=8.1e-06 Score=57.42 Aligned_cols=117 Identities=22% Similarity=0.312 Sum_probs=76.8 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHCC-CHHHHHHHCCCCCCCCCCC Q ss_conf 123676674667674325431001123344443310256654--3024567654432114-0111022103434444432 Q gi|255764490|r 151 NGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAA--NQGQVYESFNIAALWN-LNVIYVIENNQYAMGTSVS 227 (364) Q Consensus 151 ~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~--~eG~f~Ealn~A~~~~-lPvifvvenN~~aist~~~ 227 (364) T Consensus 215 ~~F~-~vG~MG~as~ialG~al~~----~~~~Vi~lDGDGs~LMh~Gs----lati~~~~~~Nl~hivlnN~~h~SvGgQ 285 (361) T TIGR03297 215 RDFL-TVGSMGHASQIALGLALAR----PDQRVVCLDGDGAALMHMGG----LATIGTQGPANLIHVLFNNGAHDSVGGQ 285 (361) T ss_pred CCEE-ECCCCCHHHHHHHHHHHHC----CCCEEEEEECCHHHHHCCCH----HHHHHHCCCCCEEEEEEECCCCCCCCCC T ss_conf 5357-3488514769999998628----89708999086899854406----8788743887479999828843255896 Q ss_pred C-CCCCCCHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCC Q ss_conf 3-21486435777776311-1121000023368875421024554546558983156 Q gi|255764490|r 228 R-ASAQTNFSKRGVSFNIP-GMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTY 282 (364) Q Consensus 228 ~-~~~~~~i~~ra~~~gi~-~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ty 282 (364) T Consensus 286 pT~~~~idf~~iA~a~Gy~~~~~v~--~~~~l~~~l~----~~~~~~Gp~fi~v~i~ 336 (361) T TIGR03297 286 PTVSQHLDFAQIAKACGYAKVYEVS--TLEELETALT----AASSANGPRLIEVKVR 336 (361) T ss_pred CCCCCCCCHHHHHHHCCCCEEEEEC--CHHHHHHHHH----HHHHCCCCEEEEEEEC T ss_conf 7777787999999975997499977--9999999999----9983899989999977 |
This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A |
| >COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.5e-06 Score=60.75 Aligned_cols=122 Identities=17% Similarity=0.278 Sum_probs=73.4 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHCCCCCCCCCCCCC---- Q ss_conf 7667466767432543100112334444331025665430245676544321140-11102210343444443232---- Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNL-NVIYVIENNQYAMGTSVSRA---- 229 (364) Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~l-PvifvvenN~~aist~~~~~---- 229 (364) T Consensus 408 ~lWGSIG~t~pAalGa~~A~~----drR~IL~iGDGs~QlT-vQE-iStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~Y 481 (557) T COG3961 408 PLWGSIGYTLPAALGAALAAP----DRRVILFIGDGSLQLT-VQE-ISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPY 481 (557) T ss_pred CCHHHCCCCCHHHHHHHHCCC----CCCEEEEECCCHHHHH-HHH-HHHHHHCCCCCEEEEECCCCCEEEEHHCCCCCCC T ss_conf 000110434276531555187----7517999727336646-999-9999974898179999389728875011887674 Q ss_pred --CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC-CCCCCEEEEECCCCC Q ss_conf --1486435777776311112100002336887542102455-454655898315668 Q gi|255764490|r 230 --SAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCR-AHKGPIIIEMLTYRY 284 (364) Q Consensus 230 --~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r-~~~gP~lie~~tyR~ 284 (364) T Consensus 482 NdI~~Wd~~~l~~afg~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~i~lIEv~lp~~ 537 (557) T COG3961 482 NDIQSWDYTALPEAFGAKNGEAK--FRATTGEELALALDVAFANNDRIRLIEVMLPVL 537 (557) T ss_pred CCCCCCCHHHHHHHCCCCCCEEE--EEECCHHHHHHHHHHHHCCCCCEEEEEEECCCC T ss_conf 22124514320555088773378--862472788999988736788508999836824 |
|
| >TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.3e-06 Score=59.20 Aligned_cols=119 Identities=22% Similarity=0.260 Sum_probs=78.7 Q ss_pred CCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH-HHHHHHCCCCCCCCCCCCCCC-CCCHH Q ss_conf 3254310011233-------44443310256654302456765443211401-110221034344444323214-86435 Q gi|255764490|r 166 LGTGIAFANKYRR-------SDKICVVCFGDGAANQGQVYESFNIAALWNLN-VIYVIENNQYAMGTSVSRASA-QTNFS 236 (364) Q Consensus 166 ~A~G~A~a~k~~~-------~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lP-vifvvenN~~aist~~~~~~~-~~~i~ 236 (364) T Consensus 197 ~aIYQArf~kYL~~Rgl~~~~~~kVWaflGDGEmDEPEs~gai~lA~rE~LDNLifVvNCNLQRLDGPVrGNgkIiqELE 276 (889) T TIGR03186 197 NAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELE 276 (889) T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHH T ss_conf 89999999999986699876788289993587668713333321566605777699995676546888468528889988 Q ss_pred HHHH-----------------------------------------------------HH----------------HHHHH Q ss_conf 7777-----------------------------------------------------76----------------31111 Q gi|255764490|r 237 KRGV-----------------------------------------------------SF----------------NIPGM 247 (364) Q Consensus 237 ~ra~-----------------------------------------------------~~----------------gi~~~ 247 (364) T Consensus 277 ~~FrGAGWnVIKviWG~~WD~Ll~~D~~G~L~~rm~e~vDG~yQ~~~a~~Gay~Re~fFg~~pel~~lv~~~sD~~i~~L 356 (889) T TIGR03186 277 SQFAGAGWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRL 356 (889) T ss_pred HHHCCCCCCEEEEEECCCHHHHHHHCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH T ss_conf 77355885269986678578998528856799998854472878763467899999980899899999850899999860 Q ss_pred HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCC Q ss_conf 2100002336887542102455454655898315668876 Q gi|255764490|r 248 QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGH 287 (364) Q Consensus 248 ~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gH 287 (364) T Consensus 357 ~RGGHDp~KvyAAy~~A~~h---kG~PTVILakTvKGyGl 393 (889) T TIGR03186 357 RRGGHDARKLYAAYDRAVRH---EGRPTVILAKTMKGFGM 393 (889) T ss_pred HCCCCCHHHHHHHHHHHHHC---CCCCEEEEEECEEECCC T ss_conf 15799829999999999857---89985998423243564 |
Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component. |
| >PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.1e-05 Score=56.58 Aligned_cols=138 Identities=21% Similarity=0.215 Sum_probs=84.9 Q ss_pred CCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH-HHHHHHCCCCCCCCCCCCCCC-CCCHH Q ss_conf 3254310011233-------44443310256654302456765443211401-110221034344444323214-86435 Q gi|255764490|r 166 LGTGIAFANKYRR-------SDKICVVCFGDGAANQGQVYESFNIAALWNLN-VIYVIENNQYAMGTSVSRASA-QTNFS 236 (364) Q Consensus 166 ~A~G~A~a~k~~~-------~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lP-vifvvenN~~aist~~~~~~~-~~~i~ 236 (364) T Consensus 211 ~aIyqArf~kYL~~Rgl~~~~~~kVw~f~GDGEmDEPEs~gai~lA~rE~LDNLifVvNCNLQRLDGPVrGNgkIiqELE 290 (898) T PRK13012 211 NAIYQARFMRYLQNRGLKDTSGRKVWGFFGDGEMDEPESIGALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELE 290 (898) T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHH T ss_conf 99999999999985799777777089995587668831123555666613687599995675015887368628999999 Q ss_pred HHHHH-----------------------------------------------------H----------------HHHHH Q ss_conf 77777-----------------------------------------------------6----------------31111 Q gi|255764490|r 237 KRGVS-----------------------------------------------------F----------------NIPGM 247 (364) Q Consensus 237 ~ra~~-----------------------------------------------------~----------------gi~~~ 247 (364) T Consensus 291 ~~FrGAGWnVIKviWGs~WD~Ll~~D~~G~L~~~m~e~vDGdyQ~~~a~~Gay~RehFFgk~Pel~~lV~~lSDedI~~L 370 (898) T PRK13012 291 ALFRGAGWNVIKVLWGSDWDALFARDTTGALARAFAETVDGQFQTFKANDGAYNREHFFGQNPELAALVAHLSDEDIDRL 370 (898) T ss_pred HHHCCCCCCEEEEEECCCHHHHHHCCCCCHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHH T ss_conf 87422895379973678667897258857799999861250767630456889999980898899999853899999987 Q ss_pred HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCC---CCCC---CC-CCCCHHHHHHHHH Q ss_conf 2100002336887542102455454655898315668876---6678---76-6789999999898 Q gi|255764490|r 248 QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGH---SMSD---PA-NYRTREEINEMRS 306 (364) Q Consensus 248 ~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gH---s~~D---~~-~YR~~~Ei~~~~~ 306 (364) T Consensus 371 ~RGGHDp~KvYAAY~~A~~~---kG~PTVILAkTvKGyGlG~~gEg~N~tHQ~KKl~~d~Lk~fRd 433 (898) T PRK13012 371 KRGGHDPRKVYAAYAAAVRH---KGQPTVILAKTKKGFGMGEAGQGRMTTHQQKKLDVEALKAFRD 433 (898) T ss_pred HCCCCCHHHHHHHHHHHHHC---CCCCEEEEEEEEEECCCCCHHHHCCHHHCCCCCCHHHHHHHHH T ss_conf 63699879999999999856---7998489752233256661242021243024599999999999 |
|
| >COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00016 Score=49.12 Aligned_cols=112 Identities=19% Similarity=0.335 Sum_probs=76.1 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHCCCHHHHHHHCCCCC-CCCCC--C------- Q ss_conf 4667674325431001123344443310256654-30245676544321140111022103434-44443--2------- Q gi|255764490|r 159 IVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAA-NQGQVYESFNIAALWNLNVIYVIENNQYA-MGTSV--S------- 227 (364) Q Consensus 159 ~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~-~eG~f~Ealn~A~~~~lPvifvvenN~~a-ist~~--~------- 227 (364) T Consensus 429 ~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~~~~ 501 (640) T COG4231 429 MMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGVAAE 501 (640) T ss_pred HCCCHHHHCCCCCCCC-----CCCEEEEECCCCCCCCCC--HHHHHHHHCCCCEEEEEEECCCHHCCCCCCCCCCCCCCC T ss_conf 3443000024542036-----885699953663220481--889999865897599998563021028988998564567 Q ss_pred -CCCCCCCHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC Q ss_conf -3214864357777763111121-00002336887542102455454655898315 Q gi|255764490|r 228 -RASAQTNFSKRGVSFNIPGMQV-DGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364) Q Consensus 228 -~~~~~~~i~~ra~~~gi~~~~v-DG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364) T Consensus 502 g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale~----~gpsViiak~ 553 (640) T COG4231 502 GTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALEV----PGPSVIIAKR 553 (640) T ss_pred CCCCCEEEHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCC----CCCEEEEECC T ss_conf 876503576565652484154012873568899999998637----8865999747 |
|
| >TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family; InterPro: IPR011896 A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00041 Score=46.52 Aligned_cols=118 Identities=22% Similarity=0.362 Sum_probs=76.7 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCC----CC Q ss_conf 2367667466767432543100112334444331025665-4302456765443211401110221034-3444----44 Q gi|255764490|r 152 GFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGA-ANQGQVYESFNIAALWNLNVIYVIENNQ-YAMG----TS 225 (364) Q Consensus 152 ~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~lPvifvvenN~-~ais----t~ 225 (364) T Consensus 47 n~~g~h~LHGRA~P~A~G~KlA----NP~L~Viv~GGDGD~~GIG~~H--fva~gRRN~dIt~l~~DN~VYGLTKGQAsP 120 (302) T TIGR02177 47 NVNGFHGLHGRALPVATGIKLA----NPKLKVIVVGGDGDLYGIGGNH--FVAAGRRNVDITVLVHDNQVYGLTKGQASP 120 (302) T ss_pred CCCCCCCCCCCCCHHHHHHHHC----CCCCEEEEEECCCCCHHHHHHH--HHHHHCCCCCCEEEEECCEECCCCCCCCCC T ss_conf 1366452335631011012010----8984689860686410110577--875411478824884247054666553452 Q ss_pred CC---CCC---CCCCHHH--------HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEEC Q ss_conf 32---321---4864357--------7777631111210000233688754210245545465589831 Q gi|255764490|r 226 VS---RAS---AQTNFSK--------RGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEML 280 (364) Q Consensus 226 ~~---~~~---~~~~i~~--------ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ 280 (364) T Consensus 121 Tl~~G~kTk~lp~pni~~~~NP~lLAiA~GytFVA-Rgfs~d~~hLKeiiK~A~~H----~G~AlvDiL 184 (302) T TIGR02177 121 TLLKGVKTKSLPYPNIQDPVNPLLLAIAAGYTFVA-RGFSGDVAHLKEIIKEAINH----KGYALVDIL 184 (302) T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHHCC----CCCEEEEEC T ss_conf 14687104233578776541389999980852745-88887489999999997328----984587611 |
Several related four-subunit enzymes may exist in the same species. This entry describes the beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.. |
| >KOG1184 consensus | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00014 Score=49.47 Aligned_cols=119 Identities=19% Similarity=0.319 Sum_probs=70.3 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH-HHHHHHCCCCCCCCCCCC----CC Q ss_conf 6674667674325431001123344443310256654302456765443211401-110221034344444323----21 Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLN-VIYVIENNQYAMGTSVSR----AS 230 (364) Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lP-vifvvenN~~aist~~~~----~~ 230 (364) T Consensus 413 ~wgsIG~svgatlG~a~a~~----e~rvilfiGDGs~qlT-vQe-iStmir~gl~~~if~~NN~GYTIE~~IH~~~Yn~I 486 (561) T KOG1184 413 QWGSIGWSVGATLGYAQAAP----EKRVILFIGDGSFQLT-VQE-ISTMIRWGLKPIIFLINNGGYTIEVEIHDGPYNDI 486 (561) T ss_pred EEEECCCCCHHHHHHHHCCC----CCEEEEEECCCHHEEE-HHH-HHHHHHCCCCCEEEEEECCCEEEEEEECCCCCCCC T ss_conf 87423765255540223267----7549999638403122-899-99998649971899992797189876247876645 Q ss_pred CCCCHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHCCCCCCCCCCEEEEECCC Q ss_conf 4864357777763111121000023---368875421024554546558983156 Q gi|255764490|r 231 AQTNFSKRGVSFNIPGMQVDGMDIR---AVKATMDKAVAYCRAHKGPIIIEMLTY 282 (364) Q Consensus 231 ~~~~i~~ra~~~gi~~~~vDG~D~~---~v~~~~~~a~~~~r~~~gP~lie~~ty 282 (364) T Consensus 487 ~~W~~~~l~~a~~~~~g~~~~~~v~~~~e~~~~~~~~~~--~~~~~i~liEv~l~ 539 (561) T KOG1184 487 QNWDYTALLEAFGAGEGKYETHKVRTEEELVEAIKDATF--EKNDKIRLIEVILP 539 (561) T ss_pred CCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHH--CCCCCCEEEEEECC T ss_conf 331178888761676541687641144689998765642--35677079999438 |
|
| >KOG4166 consensus | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00011 Score=50.24 Aligned_cols=120 Identities=25% Similarity=0.353 Sum_probs=81.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCC------- Q ss_conf 766746676743254310011233444433102566543-02456765443211401110221034-344444------- Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAAN-QGQVYESFNIAALWNLNVIYVIENNQ-YAMGTS------- 225 (364) Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~-eG~f~Ealn~A~~~~lPvifvvenN~-~aist~------- 225 (364) T Consensus 521 GGLGtMGfGLPAAIGAsVA----~P~~iViDIDGDaSF~Mt~~--E-Lat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe 593 (675) T KOG4166 521 GGLGTMGFGLPAAIGASVA----NPDAIVIDIDGDASFIMTVQ--E-LATIRQENLPVKILILNNEEQGMVTQWQDLFYE 593 (675) T ss_pred CCCCCCCCCCCHHHCCCCC----CCCCEEEECCCCCEEEEEHH--H-HHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHH T ss_conf 8743234686065402426----86547996158743565567--6-556653488448999526433168899999888 Q ss_pred ---CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCC Q ss_conf ---323214864357777763111121000023368875421024554546558983156688766 Q gi|255764490|r 226 ---VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHS 288 (364) Q Consensus 226 ---~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs 288 (364) T Consensus 594 ~rysHThQ~nPnf~klA~AmGikalRV~K~--edL~~k~ke----flsTkGPvLleV~v~-~kehV 652 (675) T KOG4166 594 ARYSHTHQENPNFLKLAAAMGIKALRVTKK--EDLREKIKE----FLSTKGPVLLEVIVP-HKEHV 652 (675) T ss_pred HHHCCCCCCCCCHHHHHHHCCCCHHEEEHH--HHHHHHHHH----HHCCCCCEEEEEECC-CCCCE T ss_conf 641210124962898998649703021028--889999999----747899768999705-75412 |
|
| >TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0012 Score=43.40 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=74.5 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHCCCHHHHHHHCCCC-CCCCCCC--------- Q ss_conf 4667674325431001123344443310256654-3024567654432114011102210343-4444432--------- Q gi|255764490|r 159 IVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAA-NQGQVYESFNIAALWNLNVIYVIENNQY-AMGTSVS--------- 227 (364) Q Consensus 159 ~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~-~eG~f~Ealn~A~~~~lPvifvvenN~~-aist~~~--------- 227 (364) T Consensus 404 ~MG~~~~~~~G~~~~----~~~~~v~a~iGDgTffHSG~--~al~~AV~~~~nit~~ILdN~~tAMTGgQ~~pg~~~~~~ 477 (595) T TIGR03336 404 CMGASIGVASGLSKA----GEKQRIVAFIGDSTFFHTGI--PGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGM 477 (595) T ss_pred CCCCCHHHHEEECCC----CCCCCEEEEECCCCCHHCCH--HHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC T ss_conf 046555653130325----79873799913661010565--999999976998699998688504348999998665446 Q ss_pred -CCCCCCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC Q ss_conf -32148643577777631111-2100002336887542102455454655898315 Q gi|255764490|r 228 -RASAQTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364) Q Consensus 228 -~~~~~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364) T Consensus 478 g~~~~~i~i~~~~r~~Gv~~v~~v~~~~~~~~~~~~~e~~~~----~GvsViI~~q 529 (595) T TIGR03336 478 GEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALAA----EGVSVIIAKQ 529 (595) T ss_pred CCCCCEEEHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHC----CCCEEEEECC T ss_conf 886432238998876699843687877989999999998618----9978999729 |
Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase. |
| >COG3962 Acetolactate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0015 Score=42.91 Aligned_cols=106 Identities=21% Similarity=0.271 Sum_probs=67.7 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCC-CCCCC------------------CCCCCCCC Q ss_conf 100112334444331025665430245676544321140111022103-43444------------------44323214 Q gi|255764490|r 171 AFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENN-QYAMG------------------TSVSRASA 231 (364) Q Consensus 171 A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN-~~ais------------------t~~~~~~~ 231 (364) T Consensus 453 ~lG~K~a~pdreV~vmVGDGSym--MlnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~sf~~~~r~~~~e~~~~ 530 (617) T COG3962 453 GLGAKAAEPDREVYVMVGDGSYM--MLNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGASFNNLLRDTDHEEEIL 530 (617) T ss_pred CCCCCCCCCCCEEEEEECCCCHH--HHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCC T ss_conf 01213279997179998266032--2457999999718737999987887513655555407602313565403557877 Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 86435777776311112100002336887542102455454655898315668 Q gi|255764490|r 232 QTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRY 284 (364) Q Consensus 232 ~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~ 284 (364) T Consensus 531 ~vDfA~~A~s~Ga~~~kv~--~i~eL~a----AL~~Ak~~~~ttvi~I~t~P~ 577 (617) T COG3962 531 QVDFAAHAESYGAKAYKVG--TIEELEA----ALADAKASDRTTVIVIDTDPK 577 (617) T ss_pred CCCHHHHHHHCCCEEEECC--CHHHHHH----HHHHHHHCCCCEEEEEECCCC T ss_conf 6638988865486258628--7899999----999987287877999826874 |
|
| >cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.018 Score=35.92 Aligned_cols=103 Identities=20% Similarity=0.251 Sum_probs=59.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 32543100112334444331025665430245676544321140111022103434444432321486435777776311 Q gi|255764490|r 166 LGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIP 245 (364) Q Consensus 166 ~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~ 245 (364) T Consensus 50 mAdgyar~~----g~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~d~~~~~~~--~t 118 (154) T cd06586 50 AAAGYARAG----GPPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGISAQAKQTFQ--SMFDLGMYRS--IP 118 (154) T ss_pred HHHHHHHHH----CCCEEEECCCCHHHH---HHHHHHHHHHCCCCEEEEECCCCHHHCCCCCCC--CHHHHHHHHH--HH T ss_conf 999999974----994899637957998---999999998756988999668887662789883--1139999999--98 Q ss_pred HHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEE Q ss_conf 1121000023368875421024554546558983 Q gi|255764490|r 246 GMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEM 279 (364) Q Consensus 246 ~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~ 279 (364) T Consensus 119 k~~~~v~~~~~~~~~l~~A~~~a~~~pGPv~l~i 152 (154) T cd06586 119 EANISSPSPAELPAGIDHAIRTAYASQGPVVVRL 152 (154) T ss_pred HEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEC T ss_conf 6489949999999999999999854998789862 |
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca |
| >cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.041 Score=33.70 Aligned_cols=103 Identities=12% Similarity=0.061 Sum_probs=60.2 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 25431001123344443310256654302456765443211401110221034344444323214864357777763111 Q gi|255764490|r 167 GTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPG 246 (364) Q Consensus 167 A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~ 246 (364) T Consensus 54 A~gyar~---tg~~gv~~~t~GpG~tN---~~~gl~~A~~~~~Pll~i~g~~~~~~~~~~~~Q--~~d~~~~~~~~tK~~ 125 (164) T cd07039 54 ASAEAKL---TGKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQVPTDELGTDYFQ--EVDLLALFKDVAVYN 125 (164) T ss_pred HHHHHHH---HCCCEEEEEECCCHHHH---HHHHHHHHHHCCCCEEEEECCCCHHHCCCCCCC--CCCHHHHHHHHHCEE T ss_conf 9999999---79987999842823888---999999999858977999667755434899874--274999989974578 Q ss_pred HHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEE Q ss_conf 121000023368875421024554546558983 Q gi|255764490|r 247 MQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEM 279 (364) Q Consensus 247 ~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~ 279 (364) T Consensus 126 ~~v--~~~~~~~~~~~~A~~~A~~~~GPV~l~i 156 (164) T cd07039 126 ETV--TSPEQLPELLDRAIRTAIAKRGVAVLIL 156 (164) T ss_pred EEC--CCHHHHHHHHHHHHHHHCCCCCCEEEEC T ss_conf 885--9999999999999998540899999992 |
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ |
| >cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.078 Score=31.91 Aligned_cols=110 Identities=12% Similarity=0.104 Sum_probs=60.7 Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 67432543100112334-44433102566543024567654432114011102210343444443232148643577777 Q gi|255764490|r 163 QVSLGTGIAFANKYRRS-DKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVS 241 (364) Q Consensus 163 ~~p~A~G~A~a~k~~~~-~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~ 241 (364) T Consensus 42 ~E~~A~~~A~g~~~~tg~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q~~d~~~~~~~ 116 (155) T cd07035 42 HEQGAVGMADGYARATGKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRPTAGEGRGA--FQEIDQVALFRP 116 (155) T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH---HHHHHHHHHHCCCCEEEEECCCCHHHHCCCC--CCCCCHHHHCCC T ss_conf 77999999999998659975999827768887---8899999998389808994688867727556--545364765277 Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHCCCCCCC-CCCEEEEE Q ss_conf 631111210000233688754210245545-46558983 Q gi|255764490|r 242 FNIPGMQVDGMDIRAVKATMDKAVAYCRAH-KGPIIIEM 279 (364) Q Consensus 242 ~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~-~gP~lie~ 279 (364) T Consensus 117 ~~k~~~~i~--~~~~~~~~i~~A~~~a~s~~~gPv~l~i 153 (155) T cd07035 117 ITKWAYRVT--SPEEIPEALRRAFRIALSGRPGPVALDL 153 (155) T ss_pred CCCEEEECC--CHHHHHHHHHHHHHHHCCCCCCCEEEEC T ss_conf 663257889--9999999999999997459894589980 |
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio |
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type; InterPro: IPR012846 Two groups of proteins form acetolactate from two molecules of pyruvate | Back alignment and domain information |
|---|
Probab=90.42 E-value=0.33 Score=27.90 Aligned_cols=97 Identities=16% Similarity=0.269 Sum_probs=52.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH-- Q ss_conf 254310011233444433102566543024567654432114011102210343444443232148643577777631-- Q gi|255764490|r 167 GTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNI-- 244 (364) Q Consensus 167 A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi-- 244 (364) T Consensus 58 ADGYARAs---GkvGVv~~TSGPGATN~---VTGiAtAy~DS~P~Vv~--------tGQV~t~~IG~DAFQE~D~~GIt~ 123 (593) T TIGR00118 58 ADGYARAS---GKVGVVLATSGPGATNL---VTGIATAYMDSVPLVVF--------TGQVPTSLIGSDAFQEADILGITM 123 (593) T ss_pred HCCCEECC---CCEEEEEEECCCCCHHH---HHHHHHHHHCCCCEEEE--------CCCHHHHHCCCCCCHHHHHCCCCC T ss_conf 23440015---83028986079872335---65677754257653775--------176000101375000001113466 Q ss_pred H----HHHHHCCHHHHHHHHHHHHCCCCCCCC-CCEEEEE Q ss_conf 1----112100002336887542102455454-6558983 Q gi|255764490|r 245 P----GMQVDGMDIRAVKATMDKAVAYCRAHK-GPIIIEM 279 (364) Q Consensus 245 ~----~~~vDG~D~~~v~~~~~~a~~~~r~~~-gP~lie~ 279 (364) T Consensus 124 PitKHsf~V--~~~edlp~~~~~AF~IA~TGRPGPVlvDl 161 (593) T TIGR00118 124 PITKHSFQV--KSAEDLPRIIKEAFHIATTGRPGPVLVDL 161 (593) T ss_pred CEEEEEECC--CCHHHHHHHHHHHHHHHCCCCCCCEEEEC T ss_conf 656753002--58789999999877643276668827858 |
The type of acetolactate synthase described in this entry also catalyzes the formation of acetohydroxybutyrate from pyruvate and 2-oxobutyrate, an early step in the branched chain amino acid biosynthesis; it is therefore also termed acetohydroxyacid synthase. In bacteria, this catalytic chain is associated with a smaller regulatory chain in an alpha2/beta2 heterotetramer. Acetolactate synthase is a thiamine pyrophosphate enzyme. In this type, FAD and Mg++ are also found. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding, 0009082 branched chain family amino acid biosynthetic process. |
| >PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=90.05 E-value=0.23 Score=28.93 Aligned_cols=113 Identities=15% Similarity=0.153 Sum_probs=71.3 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHH-HHHHH Q ss_conf 43254310011233444433102566543024--5676544321140111022103434444432321486435-77777 Q gi|255764490|r 165 SLGTGIAFANKYRRSDKICVVCFGDGAANQGQ--VYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFS-KRGVS 241 (364) Q Consensus 165 p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~--f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~-~ra~~ 241 (364) T Consensus 62 ~~~~GAs~a----GaRa--~t----aTSg~Gl~lm~E~l~~a~~~e~P~Vi~~~~R~-gpstglpt~~~q~D~~~~~~~~ 130 (377) T PRK08659 62 AAIIGASWA----GAKA--MT----ATSGPGFSLMQENIGYAAMTETPCVIVNVQRG-GPSTGQPTKPAQGDMMQARWGT 130 (377) T ss_pred HHHHHHHHH----CCCE--EE----EECCCCHHHHHHHHHHHHHCCCCEEEEEEECC-CCCCCCCCCCCCHHHHHHHCCC T ss_conf 999999873----8866--88----64575188888877787642787799996347-7888887764626578640467 Q ss_pred H-HHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCC Q ss_conf 6-311112100002336887542102455454655898315668876667 Q gi|255764490|r 242 F-NIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMS 290 (364) Q Consensus 242 ~-gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~ 290 (364) T Consensus 131 hGd~~~ivl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~Dg-~-lsh~~e 178 (377) T PRK08659 131 HGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADE-V-VGHMRE 178 (377) T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCC-C-CCCCCC T ss_conf 77777399926987999999999999999768898997166-1-024111 |
|
| >cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC) | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-23 Score=169.84 Aligned_cols=213 Identities=23% Similarity=0.310 Sum_probs=168.0 Q ss_pred CCCHHHHHHHHHHHCC------CCCEEEE-CCCCHHHHHH--HHHHHHHHHHHHHCCCCCC--CCCC-CCCCCCCCCC-- Q ss_conf 8987899999996238------9989994-3006899999--7421222234321012344--3455-6773211122-- Q gi|255764490|r 85 CIGQEAVIVGMKMSLT------EGDQMIT-AYREHGHILA--CGVDASKIMAELTGRQGGI--SKGK-GGSMHMFSTK-- 150 (364) Q Consensus 85 ~~GqEa~~vg~~~al~------~~D~~~~-~yR~~~~~l~--~G~~~~~~~ae~~gk~~g~--~~Gr-~gs~H~~~~~-- 150 (364) T Consensus 17 lEG~EslIp~l~~li~~a~~~gv~~iviGMaHRGRLNvL~nvl~Kp~~~iF~eF~g~~~~~~~~~~sGDVKYHlG~s~~~ 96 (265) T cd02016 17 LEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPEDDEGSGDVKYHLGYSSDR 96 (265) T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEE T ss_conf 56688999999999999987698679982566651889999864179999985279988963246667716378424578 Q ss_pred ---------CCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCCHH---H Q ss_conf ---------1236766746676743254310011233-----4444331025665-43024567654432114011---1 Q gi|255764490|r 151 ---------NGFYGGHGIVGAQVSLGTGIAFANKYRR-----SDKICVVCFGDGA-ANQGQVYESFNIAALWNLNV---I 212 (364) Q Consensus 151 ---------~~~~~~~~~vg~~~p~A~G~A~a~k~~~-----~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~lPv---i 212 (364) T Consensus 97 ~~~~gk~v~lsL~~NPSHLEaVnPVv~G~~RAkQ~~~~~~~~~kvlpiliHGDAAfaGQGvv~Etl~ls~l~gy~~GGti 176 (265) T cd02016 97 KTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTI 176 (265) T ss_pred EECCCCEEEEEECCCCCCCEEECCEECCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEE T ss_conf 62699889999758976416777774440565677644877663789999666111456589987666338998547669 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCC Q ss_conf 02210343444443232148643577777631111210000233688754210245545465589831566887666787 Q gi|255764490|r 213 YVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDP 292 (364) Q Consensus 213 fvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D~ 292 (364) T Consensus 177 HiivNNQIGFTT~p~~~Rss~Y~tDiaK~~~~Pi~HVNgddpeav~~a~~lA~~yR~~F~kDvvIDlvcYRr~GHNE~De 256 (265) T cd02016 177 HIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRRHGHNELDE 256 (265) T ss_pred EEEEECCEEECCCCHHHCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCC T ss_conf 99980741002581340457640026888679889976899899999999999999986998799978734568787788 Q ss_pred CCCCC Q ss_conf 66789 Q gi|255764490|r 293 ANYRT 297 (364) Q Consensus 293 ~~YR~ 297 (364) T Consensus 257 P~fTq 261 (265) T cd02016 257 PSFTQ 261 (265) T ss_pred CCCCC T ss_conf 67768 |
OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle. |
| >PRK05899 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-21 Score=156.61 Aligned_cols=194 Identities=21% Similarity=0.269 Sum_probs=139.7 Q ss_pred CE-EEE-CCCC---HHHHHHHHH--HHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 89-994-3006---899999742--12222343210123443455677321112-2123676674667674325431001 Q gi|255764490|r 103 DQ-MIT-AYRE---HGHILACGV--DASKIMAELTGRQGGISKGKGGSMHMFST-KNGFYGGHGIVGAQVSLGTGIAFAN 174 (364) Q Consensus 103 D~-~~~-~yR~---~~~~l~~G~--~~~~~~ae~~gk~~g~~~Gr~gs~H~~~~-~~~~~~~~~~vg~~~p~A~G~A~a~ 174 (364) T Consensus 62 Dr~v~~~GH~~~~~Ya~~~l~G~~~~~~~l~-~-~r~~~s~~-----~ghpe~~~~~~v~~stG~lG~gis~a~G~A~a~ 134 (661) T PRK05899 62 DRFVLSAGHGSMLLYSLLHLTGYDLSIEDLK-N-FRQLGSKT-----PGHPEYGHTPGVETTTGPLGQGLANAVGMALAE 134 (661) T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCHHHHH-H-HCCCCCCC-----CCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHH T ss_conf 8599978762569999999828999999999-8-52589999-----999986899986368886077899999999999 Q ss_pred CCCCC----------CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH-HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 12334----------4443310256654302456765443211401-110221034344444323214864357777763 Q gi|255764490|r 175 KYRRS----------DKICVVCFGDGAANQGQVYESFNIAALWNLN-VIYVIENNQYAMGTSVSRASAQTNFSKRGVSFN 243 (364) Q Consensus 175 k~~~~----------~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lP-vifvvenN~~aist~~~~~~~~~~i~~ra~~~g 243 (364) T Consensus 135 ~~~~~~~~~~~~~~~~~~v~aviGDG~l~eG~a~EAln~a~~~~l~nLIvI~ndN~~sIdg~v~~~~~-~~l~~rf~a~G 213 (661) T PRK05899 135 KLLAARFNRPGHDIVDHYTYVLLGDGCLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGDTSGWFS-EDTKKRFEAYG 213 (661) T ss_pred HHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEECCCEEECCCCCCCCH-HHHHHHHHHCC T ss_conf 99866528775566577499998206435678999998645046898899994797000664042105-98999999769 Q ss_pred HHHHHH-HCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC-CCCCC----CCCHHHHHHHHHH Q ss_conf 111121-0000233688754210245545465589831566887666-78766----7899999998983 Q gi|255764490|r 244 IPGMQV-DGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSM-SDPAN----YRTREEINEMRSN 307 (364) Q Consensus 244 i~~~~v-DG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~-~D~~~----YR~~~Ei~~~~~~ 307 (364) T Consensus 214 w~vi~v~DGhD~~~I~~Ai~~Ak~~---~~kPtvI~v~TiKG~G~p~~e~~~~~Hg~~L~~ee~~~~~~~ 280 (661) T PRK05899 214 WHVIEVVDGHDVEAIDAAIEEAKAE---TDKPTLIIAKTIIGKGSPNKEGTHKVHGAPLGAEEIAAARKA 280 (661) T ss_pred CCEEECCCCCCHHHHHHHHHHHHHC---CCCCEEEEEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHH T ss_conf 8678437999999999999999864---699868999823667873234651332587551689999996 |
|
| >PRK12753 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.9e-19 Score=141.66 Aligned_cols=232 Identities=19% Similarity=0.204 Sum_probs=149.8 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH-HHHC--CCC-------CEEE-E-CCCC---HHHHHHHHH--HHH Q ss_conf 99999999999997898777220589878999999-9623--899-------8999-4-3006---899999742--122 Q gi|255764490|r 61 LIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGM-KMSL--TEG-------DQMI-T-AYRE---HGHILACGV--DAS 123 (364) Q Consensus 61 ~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~-~~al--~~~-------D~~~-~-~yR~---~~~~l~~G~--~~~ 123 (364) T Consensus 9 ~iR~l~~~~v~~a~sGHpg~----~l~~a~i~~~L~~~~~~~~p~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~~~~~ 84 (662) T PRK12753 9 AIRALSMDAVQKANSGHPGA----PMGMADIAEVLWRDFLKHNPTNPTWYDRDRFILSNGHASMLLYSLLHLTGYDLPIE 84 (662) T ss_pred HHHHHHHHHHHHCCCCCCCH----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCHH T ss_conf 99999999999738998521----26799999999998612698895998888699867540299999999818999999 Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCCCCCCCCCC Q ss_conf 223432101234434556773211-12212367667466767432543100112334----------4443310256654 Q gi|255764490|r 124 KIMAELTGRQGGISKGKGGSMHMF-STKNGFYGGHGIVGAQVSLGTGIAFANKYRRS----------DKICVVCFGDGAA 192 (364) Q Consensus 124 ~~~ae~~gk~~g~~~Gr~gs~H~~-~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~----------~~v~v~~~GDGa~ 192 (364) T Consensus 85 ~-l~~fr~-~~s~~~-----Ghpe~~~~pgve~~tG~lGqGls~a~GmA~a~~~l~~~~n~~~~~~~d~~vy~l~GDG~l 157 (662) T PRK12753 85 E-LKNFRQ-LHSKTP-----GHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPDHEIVDHYTYVFMGDGCL 157 (662) T ss_pred H-HHHHHC-CCCCCC-----CCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC T ss_conf 9-997506-799999-----999879999844488871888999999999999976652778765547549999755400 Q ss_pred CCHHHHHHHHHHHHCCCH-HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCC Q ss_conf 302456765443211401-1102210343444443232148643577777631111-21000023368875421024554 Q gi|255764490|r 193 NQGQVYESFNIAALWNLN-VIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRA 270 (364) Q Consensus 193 ~eG~f~Ealn~A~~~~lP-vifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~ 270 (364) T Consensus 158 ~eG~~~EA~~~Ag~~~L~nLivi~D~N~isidg~~~~~~~-~~~~~rf~a~gw~vi~~idGhd~~~i~~Al~~A~~~--- 233 (662) T PRK12753 158 MEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGEVEGWFT-DDTAKRFEAYGWHVIHDIDGHDPQAIKEAILEAQSV--- 233 (662) T ss_pred CCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEC-HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH--- T ss_conf 0479999999887608886899980898846777210013-668999996497699814887779999999998872--- Q ss_pred CCCCEEEEECCCCCCCCC-CCCC----CCCCCHHHHHHHHHH Q ss_conf 546558983156688766-6787----667899999998983 Q gi|255764490|r 271 HKGPIIIEMLTYRYRGHS-MSDP----ANYRTREEINEMRSN 307 (364) Q Consensus 271 ~~gP~lie~~tyR~~gHs-~~D~----~~YR~~~Ei~~~~~~ 307 (364) T Consensus 234 ~~kPtlI~~kT~IG~GsP~~eG~~~~HG~PLg~eei~~~k~~ 275 (662) T PRK12753 234 KDKPSLIICRTIIGFGSPNKAGKEESHGAPLGEEEVALTRQK 275 (662) T ss_pred CCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHH T ss_conf 699859998543455771320244336776647899999987 |
|
| >PRK12754 transketolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=139.80 Aligned_cols=195 Identities=17% Similarity=0.189 Sum_probs=136.1 Q ss_pred CEEEE--CCCC---HHHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 89994--3006---899999742-122223432101234434556773211-1221236766746676743254310011 Q gi|255764490|r 103 DQMIT--AYRE---HGHILACGV-DASKIMAELTGRQGGISKGKGGSMHMF-STKNGFYGGHGIVGAQVSLGTGIAFANK 175 (364) Q Consensus 103 D~~~~--~yR~---~~~~l~~G~-~~~~~~ae~~gk~~g~~~Gr~gs~H~~-~~~~~~~~~~~~vg~~~p~A~G~A~a~k 175 (364) T Consensus 58 Dr~v~s~GH~s~~~Y~~l~l~G~~~~~~~l~~fr~-~~s~~-----~Ghpe~~~~~gve~~tG~lGqgis~a~G~A~a~~ 131 (663) T PRK12754 58 DRFVLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQ-LHSKT-----PGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEK 131 (663) T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHCC-CCCCC-----CCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHH T ss_conf 84998675302799999998188997999997268-99999-----9999879999945587880889999999999999 Q ss_pred CCCC----------CCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 2334----------444331025665430245676544321140-11102210343444443232148643577777631 Q gi|255764490|r 176 YRRS----------DKICVVCFGDGAANQGQVYESFNIAALWNL-NVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNI 244 (364) Q Consensus 176 ~~~~----------~~v~v~~~GDGa~~eG~f~Ealn~A~~~~l-PvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi 244 (364) T Consensus 132 ~l~~~~~~~~~~~~d~~v~~viGDG~l~eG~a~EAl~~Ag~~~l~nLivi~ddN~~sI~g~v~~~~s-ed~~~RfeA~GW 210 (663) T PRK12754 132 TLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFT-DDTAMRFEAYGW 210 (663) T ss_pred HHHHHHCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHH-HHHHHHHHHCCC T ss_conf 9765527687655476189997545010589999999745167787899987887755765444520-458999986184 Q ss_pred HHHH-HHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC-CC----CCCCCCHHHHHHHHHH Q ss_conf 1112-10000233688754210245545465589831566887666-78----7667899999998983 Q gi|255764490|r 245 PGMQ-VDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSM-SD----PANYRTREEINEMRSN 307 (364) Q Consensus 245 ~~~~-vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~-~D----~~~YR~~~Ei~~~~~~ 307 (364) T Consensus 211 ~vi~~idGhd~~~I~~Al~~A~~~---~~kPtlI~~kTviG~G~p~~~g~~~~HG~pl~~~ei~~~k~~ 276 (663) T PRK12754 211 HVIRGIDGHDADSIKRAVEEARAV---TDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQ 276 (663) T ss_pred EEEECCCCCCHHHHHHHHHHHHHC---CCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHH T ss_conf 067445877899999999999860---699848886411255886535551212766667789999998 |
|
| >COG0021 TktA Transketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-19 Score=146.45 Aligned_cols=230 Identities=20% Similarity=0.289 Sum_probs=154.0 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH-HHHCC--C-------CCEEEECCCCHHHHHH--------HHHH Q ss_conf 999999999999997898777220589878999999-96238--9-------9899943006899999--------7421 Q gi|255764490|r 60 LLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGM-KMSLT--E-------GDQMITAYREHGHILA--------CGVD 121 (364) Q Consensus 60 ~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~-~~al~--~-------~D~~~~~yR~~~~~l~--------~G~~ 121 (364) T Consensus 11 naiR~Ls~davqkAnSGHP-G---~pmG~A~ia~~L~~~~l~~nP~nP~W~nRDRFVLSa-GHgSmllYsllhl~Gy~ls 85 (663) T COG0021 11 NAIRFLSMDAVQKANSGHP-G---APMGAADIAYVLWTRFLKHNPDNPKWINRDRFVLSA-GHGSMLLYSLLHLTGYDLS 85 (663) T ss_pred HHHHHHHHHHHHHCCCCCC-C---CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECC-CCHHHHHHHHHHHCCCCCC T ss_conf 9999999999975138989-8---775488999999998741799999977876278607-7405999999998068887 Q ss_pred HHHH--HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCCCCCCC Q ss_conf 2222--343210123443455677321112212367667466767432543100112334----------4443310256 Q gi|255764490|r 122 ASKI--MAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRS----------DKICVVCFGD 189 (364) Q Consensus 122 ~~~~--~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~----------~~v~v~~~GD 189 (364) T Consensus 86 ~edLk~FRQ~~SkTpGHPE--------~~~t~gVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GD 157 (663) T COG0021 86 LEDLKNFRQLGSKTPGHPE--------YGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGD 157 (663) T ss_pred HHHHHHHCCCCCCCCCCCC--------CCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC T ss_conf 9999850457899999987--------68989857156763015888999999999998761778886434328999747 Q ss_pred CCCCCHHHHHHHHHHHHCCCH-HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCC Q ss_conf 654302456765443211401-1102210343444443232148643577777631111-21000023368875421024 Q gi|255764490|r 190 GAANQGQVYESFNIAALWNLN-VIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAY 267 (364) Q Consensus 190 Ga~~eG~f~Ealn~A~~~~lP-vifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~ 267 (364) T Consensus 158 GclmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f~-ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~ 236 (663) T COG0021 158 GCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSFT-EDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKAS 236 (663) T ss_pred CHHHCCCHHHHHHHHHHCCCCCEEEEEECCCCEECCCCCCCCC-HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHC T ss_conf 3575161899998873447786899993798423267555553-669999985498698601888999999999999746 Q ss_pred CCCCCCCEEEEECCCCCCCCCC-CCCC----CCCCHHHHHHHHH Q ss_conf 5545465589831566887666-7876----6789999999898 Q gi|255764490|r 268 CRAHKGPIIIEMLTYRYRGHSM-SDPA----NYRTREEINEMRS 306 (364) Q Consensus 268 ~r~~~gP~lie~~tyR~~gHs~-~D~~----~YR~~~Ei~~~~~ 306 (364) T Consensus 237 ---~dkPtlI~~kTiIG~Gsp~kegt~~~HGapLg~~ev~~~k~ 277 (663) T COG0021 237 ---TDKPTLIIVKTIIGKGSPNKEGTHKVHGAPLGEEEVAAAKK 277 (663) T ss_pred ---CCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf ---79973899986640588876887654578888799999999 |
|
| >PTZ00089 transketolase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-19 Score=145.29 Aligned_cols=231 Identities=18% Similarity=0.230 Sum_probs=152.0 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH-HHHCC--CC-------CEEEECCCCHHH---H----H-HHHHH Q ss_conf 999999999999997898777220589878999999-96238--99-------899943006899---9----9-97421 Q gi|255764490|r 60 LLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGM-KMSLT--EG-------DQMITAYREHGH---I----L-ACGVD 121 (364) Q Consensus 60 ~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~-~~al~--~~-------D~~~~~yR~~~~---~----l-~~G~~ 121 (364) T Consensus 11 ~~ir~l~~d~v~~a~sGHpG~----~l~~a~i~~~L~~~~l~~~p~~p~w~~RDrfvlS~-GH~s~~lY~~l~l~g~~~~ 85 (670) T PTZ00089 11 NEIRMLSAELPLEAKSGHQGA----PIGCAPIAHILWAYVMNYYNEDTKWINRDRFILSN-GHASALLYTMLYLTEQGLS 85 (670) T ss_pred HHHHHHHHHHHHHCCCCCCCH----HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECC-CCHHHHHHHHHHHHCCCCC T ss_conf 999999999999718999861----36799999999998603398894999998699755-1277999999998159999 Q ss_pred HHHH--HHHHHCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCCCCCC Q ss_conf 2222--343210123443455677321-112212367667466767432543100112334----------444331025 Q gi|255764490|r 122 ASKI--MAELTGRQGGISKGKGGSMHM-FSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRS----------DKICVVCFG 188 (364) Q Consensus 122 ~~~~--~ae~~gk~~g~~~Gr~gs~H~-~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~----------~~v~v~~~G 188 (364) T Consensus 86 ~e~l~~fr~~~s~~~g---------Hpe~~~~~gve~ttG~LGqG~~~avGmAla~~~l~~~~~~~~~~i~d~~vy~l~G 156 (670) T PTZ00089 86 MEDLKNFRQFESLTPG---------HPEKHITKGVEVTTGPLGQGASNAVGMAIAAHNLADKYNTEEFKIFDNYVYAICG 156 (670) T ss_pred HHHHHHHCCCCCCCCC---------CCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC T ss_conf 9999974547999999---------9999999880258887187899999999999998756187766654633999977 Q ss_pred CCCCCCHHHHHHHHHHHHCCCH-HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HCC-HHHHHHHHHHHHC Q ss_conf 6654302456765443211401-110221034344444323214864357777763111121-000-0233688754210 Q gi|255764490|r 189 DGAANQGQVYESFNIAALWNLN-VIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQV-DGM-DIRAVKATMDKAV 265 (364) Q Consensus 189 DGa~~eG~f~Ealn~A~~~~lP-vifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~v-DG~-D~~~v~~~~~~a~ 265 (364) T Consensus 157 DG~l~EG~~~EA~~~Ag~~~L~nLi~i~D~N~i~idg~~~~~~~-~d~~~r~~a~gW~v~~v~~g~~d~~~i~~ai~~Ak 235 (670) T PTZ00089 157 DGCMQEGVFCEAASLAGHLGLGRLILLYDDNKITIDGNTDLSFT-EDIEKKFEALKWEVRKVEDGNKDFAGILHEIEEAK 235 (670) T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC-HHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHH T ss_conf 75434589999999864628998899991772114688543656-65999999807713433667779999999999998 Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCC----CCCCCHHHHHHHHHHC Q ss_conf 245545465589831566887666787----6678999999989838 Q gi|255764490|r 266 AYCRAHKGPIIIEMLTYRYRGHSMSDP----ANYRTREEINEMRSNH 308 (364) Q Consensus 266 ~~~r~~~gP~lie~~tyR~~gHs~~D~----~~YR~~~Ei~~~~~~~ 308 (364) T Consensus 236 ~~---~~kPtlI~~~T~iG~Gs~~eGt~~~HG~pLg~eei~~~K~~l 279 (670) T PTZ00089 236 KN---LKQPSLIIVQTACGFGTKVEGTCKSHGLALKDEDLKKAKEFF 279 (670) T ss_pred HC---CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHC T ss_conf 55---899848996422246557678755358877769999999973 |
|
| >cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-12 Score=100.35 Aligned_cols=197 Identities=19% Similarity=0.164 Sum_probs=133.0 Q ss_pred CCEEEEC-CCCH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 9899943-0068---99999742122223432101234434556773211---122123676674667674325431001 Q gi|255764490|r 102 GDQMITA-YREH---GHILACGVDASKIMAELTGRQGGISKGKGGSMHMF---STKNGFYGGHGIVGAQVSLGTGIAFAN 174 (364) Q Consensus 102 ~D~~~~~-yR~~---~~~l~~G~~~~~~~ae~~gk~~g~~~Gr~gs~H~~---~~~~~~~~~~~~vg~~~p~A~G~A~a~ 174 (364) T Consensus 60 ~D~V~~qgHasP~~yA~~~L~Grl~~e~L~~fR-~e~---~~~Gl~syP~p~~~p~~-~~f~TgSmGlG~~~ai~~A~~~ 134 (386) T cd02017 60 GDLVYFQGHASPGIYARAFLEGRLTEEQLDNFR-QEV---GGGGLSSYPHPWLMPDF-WEFPTVSMGLGPIQAIYQARFN 134 (386) T ss_pred CCEEEECCCCCHHHHHHHHHHCCCCHHHHHHHC-CCC---CCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHH T ss_conf 887886687678999999983799989997650-335---79988899998889850-2167777773689999999999 Q ss_pred CCCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH-HHHHHHCCCCCCCCCCCCC-CCCCCHHHHHHHHHHH Q ss_conf 1233-------44443310256654302456765443211401-1102210343444443232-1486435777776311 Q gi|255764490|r 175 KYRR-------SDKICVVCFGDGAANQGQVYESFNIAALWNLN-VIYVIENNQYAMGTSVSRA-SAQTNFSKRGVSFNIP 245 (364) Q Consensus 175 k~~~-------~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lP-vifvvenN~~aist~~~~~-~~~~~i~~ra~~~gi~ 245 (364) T Consensus 135 rYl~~rg~~~~~~~rv~~~~GDgEldEg~~~eAi~~a~~~~LdNL~~vvd~N~Q~LDgpV~gn~kiiqele~~F~~aGW~ 214 (386) T cd02017 135 RYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGIFRGAGWN 214 (386) T ss_pred HHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCE T ss_conf 99986488887777389996252115098999999999847797799995698656752267632589999999877980 Q ss_pred HHHH---------------------------------------------------------------------HCCHHHH Q ss_conf 1121---------------------------------------------------------------------0000233 Q gi|255764490|r 246 GMQV---------------------------------------------------------------------DGMDIRA 256 (364) Q Consensus 246 ~~~v---------------------------------------------------------------------DG~D~~~ 256 (364) T Consensus 215 VIkv~wG~~wd~lf~~d~~g~L~~~m~e~~dg~yQ~~~~~~Ga~~Re~ffg~~pel~~lv~~lsD~dl~~L~rGGHD~~k 294 (386) T cd02017 215 VIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDEDLWALNRGGHDPRK 294 (386) T ss_pred EEEECCCHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCHHH T ss_conf 89853221499997678754699998866788889887247599999980898889999850788789987628999899 Q ss_pred HHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCC---CC---C-CCCCHHHHHHHHH Q ss_conf 6887542102455454655898315668876667---87---6-6789999999898 Q gi|255764490|r 257 VKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMS---DP---A-NYRTREEINEMRS 306 (364) Q Consensus 257 v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~---D~---~-~YR~~~Ei~~~~~ 306 (364) T Consensus 295 l~aAy~~A~~~---~grPTVIlA~TvKG~Glg~age~~N~aHq~Kkl~~~~l~~fRd 348 (386) T cd02017 295 VYAAYKKAVEH---KGKPTVILAKTIKGYGLGAAGEGRNHAHQVKKMTEDELKALRD 348 (386) T ss_pred HHHHHHHHHHC---CCCCEEEEEEEEECCCCCCCCCCCCHHHHHCCCCHHHHHHHHH T ss_conf 99999999847---9998799977441278881336765544431599999999999 |
coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme. |
| >cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.3e-11 Score=90.19 Aligned_cols=158 Identities=20% Similarity=0.229 Sum_probs=100.3 Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 78999999962389989994300689999974212222343210123443455677321112212367667466767432 Q gi|255764490|r 88 QEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLG 167 (364) Q Consensus 88 qEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A 167 (364) T Consensus 2 ~~ai~-~v~~~~~~~~~vvs~~---------G~~sreL~~~~----~~~---------~~~~~~~fy-~~GsMG~a~p~A 57 (188) T cd03371 2 EDAIE-IVLSRAPATAAVVSTT---------GMTSRELFELR----DRP---------GGGHAQDFL-TVGSMGHASQIA 57 (188) T ss_pred HHHHH-HHHHHCCCCCEEEECC---------CCCHHHHHHHH----HCC---------CCCCCCCCE-EECHHHHHHHHH T ss_conf 89999-9997289999899799---------98859999998----502---------787667515-543123178999 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHCCCH-HHHHHHCCCCCCCCCCC-CCCCCCCHHHHHHHHH Q ss_conf 5431001123344443310256654--302456765443211401-11022103434444432-3214864357777763 Q gi|255764490|r 168 TGIAFANKYRRSDKICVVCFGDGAA--NQGQVYESFNIAALWNLN-VIYVIENNQYAMGTSVS-RASAQTNFSKRGVSFN 243 (364) Q Consensus 168 ~G~A~a~k~~~~~~v~v~~~GDGa~--~eG~f~Ealn~A~~~~lP-vifvvenN~~aist~~~-~~~~~~~i~~ra~~~g 243 (364) T Consensus 58 iG~ala----~p~r~Vv~l~GDGs~lM~~ge----L~T~~~~~~~n~~~vv~nN~~~~s~g~q~t~~~~~df~~iA~a~G 129 (188) T cd03371 58 LGIALA----RPDRKVVCIDGDGAALMHMGG----LATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVSLPAIAKACG 129 (188) T ss_pred HHHHHH----CCCCEEEEEECCHHHHHHHHH----HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCC T ss_conf 999983----999818999573388888579----999997278877999987965223468766578989999999869 Q ss_pred HH-HHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 11-11210000233688754210245545465589831566 Q gi|255764490|r 244 IP-GMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364) Q Consensus 244 i~-~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364) T Consensus 130 ~~~~~~v~--~~~el~~al~~al----~~~gP~~ieV~idp 164 (188) T cd03371 130 YRAVYEVP--SLEELVAALAKAL----AADGPAFIEVKVRP 164 (188) T ss_pred CCCEEEEC--CHHHHHHHHHHHH----HCCCCEEEEEEECC T ss_conf 98279978--9999999999998----48999999999789 |
PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors. |
| >TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type; InterPro: IPR012846 Two groups of proteins form acetolactate from two molecules of pyruvate | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-10 Score=85.99 Aligned_cols=184 Identities=16% Similarity=0.289 Sum_probs=114.3 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCH-HHHHH---HHHHHCCC--CCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 9999999999789877722058987-89999---99962389--989994300689999974212222343210123443 Q gi|255764490|r 64 RFEEKAGQLYGMGMVGGFCHLCIGQ-EAVIV---GMKMSLTE--GDQMITAYREHGHILACGVDASKIMAELTGRQGGIS 137 (364) Q Consensus 64 ~~e~~~~~l~~qg~i~g~~~~~~Gq-Ea~~v---g~~~al~~--~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk~~g~~ 137 (364) T Consensus 366 ~W~~~i~~Wk~~~~l-~Y~~~~~~~kiKPQ~vi~~~~~~~~~~~~~aivTTDVGQhQMWa---------A~fy~------ 429 (593) T TIGR00118 366 AWLEQINKWKKEYPL-AYMDYTEEGKIKPQQVIEEISRVTKDIGREAIVTTDVGQHQMWA---------AQFYP------ 429 (593) T ss_pred HHHHHHHHHHHHCCH-HHCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCHHHHHH---------HHHCC------ T ss_conf 999999998761473-12466788853607999999996278885368972777347889---------86157------ Q ss_pred CCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHH Q ss_conf 455677321112212367--667466767432543100112334444331025665430245676544321140111022 Q gi|255764490|r 138 KGKGGSMHMFSTKNGFYG--GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVI 215 (364) Q Consensus 138 ~Gr~gs~H~~~~~~~~~~--~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvv 215 (364) T Consensus 430 ---------~~~Pr~fI~SGGLGTMGFGlPAAiGAkvA~----pe~~Vi~i~GDGsF~Mn-~QE-L~t~~~y~iPV~i~i 494 (593) T TIGR00118 430 ---------FKKPRKFITSGGLGTMGFGLPAAIGAKVAK----PEETVICITGDGSFQMN-LQE-LSTIVQYDIPVKIVI 494 (593) T ss_pred ---------CCCCCCEECCCCCCCCCCCCHHHHCCCCCC----CCCCEEEEECCCCCCCH-HHH-HHHHHHCCCCEEEEE T ss_conf ---------778864131377631101026886000047----88664787538732123-467-889987189649998 Q ss_pred HCCCC-CC------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC Q ss_conf 10343-44------------44432321486435777776311112100002336887542102455454655898315 Q gi|255764490|r 216 ENNQY-AM------------GTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364) Q Consensus 216 enN~~-ai------------st~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364) T Consensus 495 LNN~~LGMV~QWQ~lfY~~RyS~t~~~~~~PDF~kLAEayG~~G~ri~--~~~E~~~kL~Ea~~~~r~-n~Pv~~Dv~V 570 (593) T TIGR00118 495 LNNRYLGMVRQWQELFYEERYSETHMGSELPDFVKLAEAYGIKGIRIE--KPEELDEKLKEALESKRN-NEPVLLDVVV 570 (593) T ss_pred ECCCCCCHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHCCCCEEEEC--CHHHHHHHHHHHHHHCCC-CCCEEEEEEE T ss_conf 458965604888887521102357630689428999987295025547--887799999999861468-8846999997 |
The type of acetolactate synthase described in this entry also catalyzes the formation of acetohydroxybutyrate from pyruvate and 2-oxobutyrate, an early step in the branched chain amino acid biosynthesis; it is therefore also termed acetohydroxyacid synthase. In bacteria, this catalytic chain is associated with a smaller regulatory chain in an alpha2/beta2 heterotetramer. Acetolactate synthase is a thiamine pyrophosphate enzyme. In this type, FAD and Mg++ are also found. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding, 0009082 branched chain family amino acid biosynthetic process. |
| >PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.4e-07 Score=64.95 Aligned_cols=208 Identities=15% Similarity=0.164 Sum_probs=119.8 Q ss_pred HHHHHCCCCCC-CCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 99997898777-22058987899999996238998999430068999997421222234321012344345567732111 Q gi|255764490|r 70 GQLYGMGMVGG-FCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFS 148 (364) Q Consensus 70 ~~l~~qg~i~g-~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk~~g~~~Gr~gs~H~~~ 148 (364) T Consensus 6 ~~ylr~~~~P~~wCpG-CG~g~Il~~l~~A~~e----------------lg~~~~~~v---vvsGIGCS-~r~--~~Y-- 60 (281) T PRK09628 6 DEYLRVDKMPTLWCWG-CGDGVILKSIIRAIDK----------------LGWNMDDVC---VVSGIGCS-GRF--SSY-- 60 (281) T ss_pred HHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHHH----------------HCCCCCCEE---EEECCCCC-CCC--CCE-- T ss_conf 8883356899887889-9768999999999998----------------199955489---99478735-303--371-- Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCC---- Q ss_conf 2212367667466767432543100112334444331025665-4302456765443211401110221034-344---- Q gi|255764490|r 149 TKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGA-ANQGQVYESFNIAALWNLNVIYVIENNQ-YAM---- 222 (364) Q Consensus 149 ~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~lPvifvvenN~-~ai---- 222 (364) T Consensus 61 --~~~~~~ht~HGRala~AtGiK~A----nPdl~Viv~~GDGD~~aIGgnH--~iHAaRRN~dit~Iv~NN~iYGmTgGQ 132 (281) T PRK09628 61 --VNCNTVHTTHGRAVAYATGIKLA----NPSKHVIVVSGDGDGLAIGGNH--TIHGCRRNIDLNHILINNFIYGLTNSQ 132 (281) T ss_pred --EECCCEEHHHCCHHHHHHHHHHH----CCCCEEEEEECCCHHHHCHHHH--HHHHHHHCCCCEEEEECCEEEECCCCC T ss_conf --76372631112508889999986----8997699981574042030889--999998089928999877723037885 Q ss_pred ---CCCCCCCCC---------CCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC Q ss_conf ---444323214---------8643577777631111-210000233688754210245545465589831566887666 Q gi|255764490|r 223 ---GTSVSRASA---------QTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSM 289 (364) Q Consensus 223 ---st~~~~~~~---------~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~ 289 (364) T Consensus 133 ~SPTTp~G~~T~TtP~G~~e~p~d~~~la~aaGatfVAR~~~~~~~~l~~~ik~Ai~h----kGfS~VevlspCpt--~~ 206 (281) T PRK09628 133 TSPTTPKGMWTVTAQWGNIDPNFDACKLATAAGASFVARESVIDPKKLEKLLVKGFSH----KGFSFFDVFSNCHI--NL 206 (281) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCC----CCCEEEEEECCCCC--CC T ss_conf 6989999875666899987899699999987699789987048999999999999659----99679999568988--75 Q ss_pred CCCCCCCCHHHHHHH-HHHCCHHHHHHH Q ss_conf 787667899999998-983893799999 Q gi|255764490|r 290 SDPANYRTREEINEM-RSNHDPIEQVRK 316 (364) Q Consensus 290 ~D~~~YR~~~Ei~~~-~~~~DPI~~~~~ 316 (364) T Consensus 207 gr~Nk~~~~~~~~~~~k~~~~~~~~~~~ 234 (281) T PRK09628 207 GRKNKMGEAVQMLEWIKSRTVSKRKFDA 234 (281) T ss_pred CCCCCCCCHHHHHHHHHHCCCCHHHHHH T ss_conf 5316867779999999873777788652 |
|
| >TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase; InterPro: IPR005477 DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.1e-06 Score=62.96 Aligned_cols=198 Identities=21% Similarity=0.318 Sum_probs=131.3 Q ss_pred CCCCCCCCHHHHHHHHHHHCC-CCCE-EE-ECCCCHHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 722058987899999996238-9989-99-430068999997421-2222343210123443455677321112212367 Q gi|255764490|r 80 GFCHLCIGQEAVIVGMKMSLT-EGDQ-MI-TAYREHGHILACGVD-ASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYG 155 (364) Q Consensus 80 g~~~~~~GqEa~~vg~~~al~-~~D~-~~-~~yR~~~~~l~~G~~-~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~ 155 (364) T Consensus 38 g~~~~~lg~~~l~~~~~~~~~~~~~~~~wd~g~~~y~~~~l~g~~~~~~~~~~~~g~~~~~~~~~--------~~~d~-~ 108 (627) T TIGR00204 38 GHLGPGLGVVELTVALHYLFDTPKDPLIWDVGHQAYPHKLLTGRGEEFSTLRQKDGLHGFPKRSE--------SEYDV-F 108 (627) T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCC--------CCCCE-E T ss_conf 53334442334565567654276433033134202234444124113344443056677777654--------22100-0 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCHHHHHHHCCCCCCCCCCCCCCCCC- Q ss_conf 6674667674325431001123344443310256654302456765443211-40111022103434444432321486- Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALW-NLNVIYVIENNQYAMGTSVSRASAQT- 233 (364) Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~-~lPvifvvenN~~aist~~~~~~~~~- 233 (364) T Consensus 109 ~~g~~~~~~~~g~g~~~~~~~~~~~~~~~~~~gdg~~~~g~~~~~~~~~g~~p~~~~~~~l~d~~~~~~~~~g~~~~~l~ 188 (627) T TIGR00204 109 GAGHSSTSISAGLGVALARDLKGADGKPVCLIGDGALTGGLALEALNHAGDLPKTDLLVILNDNEMSISPNVGALSNHLG 188 (627) T ss_pred ECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHH T ss_conf 12543101233444566654311366136764153012346777666412567765388873753222443247888888 Q ss_pred -----------------------C-------HHHHH----HH------------HHHHHH-HHHCCHHHHHHHHHHHHCC Q ss_conf -----------------------4-------35777----77------------631111-2100002336887542102 Q gi|255764490|r 234 -----------------------N-------FSKRG----VS------------FNIPGM-QVDGMDIRAVKATMDKAVA 266 (364) Q Consensus 234 -----------------------~-------i~~ra----~~------------~gi~~~-~vDG~D~~~v~~~~~~a~~ 266 (364) T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~lg~~y~gp~~g~~~~~~~~~~~~~~~ 268 (627) T TIGR00204 189 RLRSGSLYQSLRDGLKKLLKKLPPVGNYLAPLAERVEESLKGLLVPPVGTLFEELGFNYLGPVDGHDLSELIETLKNAKK 268 (627) T ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCEECCCCCHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHH T ss_conf 76402102345534678764145101355677887665320000143002334305410066565307899998887652 Q ss_pred CCCCCCCCEEEEECCCCCCCCCCC Q ss_conf 455454655898315668876667 Q gi|255764490|r 267 YCRAHKGPIIIEMLTYRYRGHSMS 290 (364) Q Consensus 267 ~~r~~~gP~lie~~tyR~~gHs~~ 290 (364) T Consensus 269 ----~~gp~~~~~~~~~g~gy~~~ 288 (627) T TIGR00204 269 ----LKGPVLLHVSTKKGKGYKPA 288 (627) T ss_pred ----CCCCEEEEEEECCCCCCCCC T ss_conf ----37853788762157764433 |
DXP synthase is found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis . In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding . This family includes transketolase enzymes 2.2.1.1 from EC. and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0008661 1-deoxy-D-xylulose-5-phosphate synthase activity, 0016114 terpenoid biosynthetic process. |
| >PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.3e-07 Score=67.35 Aligned_cols=180 Identities=24% Similarity=0.343 Sum_probs=109.6 Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 78987772205898789999999623899899943006899999742122223432101234434556773211122123 Q gi|255764490|r 74 GMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGF 153 (364) Q Consensus 74 ~qg~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~ 153 (364) T Consensus 13 ~~~~p~~wCpGC-G~~~il~~i~~A~~e----------------l~~~p~~~v---~vsGIGCs-~~~--~~y~----~~ 65 (306) T PRK05778 13 YDGLPTTWCPGC-GNFSILNAFIQALAE----------------LGLDPDRVV---VVSGIGCS-SKT--PGYF----LS 65 (306) T ss_pred CCCCCCCCCCCC-CCHHHHHHHHHHHHH----------------CCCCCCCEE---EEECCCCC-CCC--CCEE----EC T ss_conf 689977658999-858999999999998----------------099967789---99576676-152--7848----85 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCC-------CC Q ss_conf 67667466767432543100112334444331025665-4302456765443211401110221034-344-------44 Q gi|255764490|r 154 YGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGA-ANQGQVYESFNIAALWNLNVIYVIENNQ-YAM-------GT 224 (364) Q Consensus 154 ~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~lPvifvvenN~-~ai-------st 224 (364) T Consensus 66 ~~~h~~HGRa~~~AtGiK~a----npdl~Vi~~~GDGd~~~IG~~--hl~ha~rRN~dit~Iv~nN~vYglTgGQ~SpTt 139 (306) T PRK05778 66 HGLHTLHGRAIAFATGAKLA----NPDLKVIVVGGDGDLASIGGG--HFIHAGRRNVDITVIVENNGVYGLTKGQASPTT 139 (306) T ss_pred CCEEECCCCHHHHHHHHHHH----CCCCEEEEEECCCCHHCCCHH--HHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCC T ss_conf 75301114418899899876----889869999357612113178--789999838994699987633233688669899 Q ss_pred CCCCCCC---------CCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEEC--CCCCCCCCCC Q ss_conf 4323214---------8643577777631111-210000233688754210245545465589831--5668876667 Q gi|255764490|r 225 SVSRASA---------QTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEML--TYRYRGHSMS 290 (364) Q Consensus 225 ~~~~~~~---------~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~--tyR~~gHs~~ 290 (364) T Consensus 140 p~G~~t~ttp~G~~~~p~n~~~la~a~ga~fVAR~~~~~~~~l~~~ik~Ai~h----kGfs~i~VlspC~Tfn~~~~~ 213 (306) T PRK05778 140 PRGSKTKTLPYGNIEPPIDPCALALAAGATFVARSFSGDVKQLKELIKKAISH----KGFAFIDVLSPCVTFNGRRNS 213 (306) T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCC----CCCEEEEEECCCCCCCCCCCC T ss_conf 99874664789986788699999997699869987547889999999999669----996799996789734586655 |
|
| >PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.6e-06 Score=61.94 Aligned_cols=172 Identities=24% Similarity=0.364 Sum_probs=105.5 Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 97898777220589878999999962389989994300689999974212222343210123443455677321112212 Q gi|255764490|r 73 YGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNG 152 (364) Q Consensus 73 ~~qg~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~ 152 (364) T Consensus 9 y~~~~~~~WCpGC-G~~~Il~a~~~al~e----------------l~~~~~~~v---~vSGIGCs-~r--~p~y----~~ 61 (286) T PRK11866 9 YAVKRPPIWCPGC-GNYGILEALRRALAE----------------LGIPPENVV---VVSGIGCS-SN--LPEF----LN 61 (286) T ss_pred CCCCCCCCCCCCC-CCHHHHHHHHHHHHH----------------CCCCCCCEE---EEECCCCC-CC--CCCC----EE T ss_conf 0889998668999-718999999999998----------------599966389---98277766-30--5050----75 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCC-------C Q ss_conf 367667466767432543100112334444331025665-4302456765443211401110221034-344-------4 Q gi|255764490|r 153 FYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGA-ANQGQVYESFNIAALWNLNVIYVIENNQ-YAM-------G 223 (364) Q Consensus 153 ~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~lPvifvvenN~-~ai-------s 223 (364) T Consensus 62 ~~~~h~lHGRalp~AtGiK~A----nPdL~Viv~~GDGD~~~IG~nh--~ihA~rRN~dit~iv~nN~iYGlTgGQ~SpT 135 (286) T PRK11866 62 TYGIHGIHGRLLPIATGVKWA----NPKLTVIAYGGDGDGYGIGLQH--LIHAARRNVDITYIVSNNQVYGLTTGQASPT 135 (286) T ss_pred CCCEEHHHCCCHHHHHHHHHH----CCCCEEEEEECCCCHHCCHHHH--HHHHHHHCCCCEEEEECCHHHCCCCCCCCCC T ss_conf 262402212506889999875----8997799992687320423889--9999984899379998874321478968989 Q ss_pred CCCCCCCCC---------CCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC Q ss_conf 443232148---------643577777631111-2100002336887542102455454655898315 Q gi|255764490|r 224 TSVSRASAQ---------TNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364) Q Consensus 224 t~~~~~~~~---------~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364) T Consensus 136 Tp~G~~T~ttP~G~~~~p~np~~la~a~gatfVAR~~~~~~~~l~~~ik~Ai~----hkGfs~VeVls 199 (286) T PRK11866 136 TPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKKAIK----HKGFSFIDVLS 199 (286) T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHC----CCCCEEEEEEC T ss_conf 99988576479998778979999999879988997704799999999999977----99967999978 |
|
| >PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.3e-06 Score=62.52 Aligned_cols=166 Identities=23% Similarity=0.352 Sum_probs=100.9 Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 77220589878999999962389989994300689999974212222343210123443455677321112212367667 Q gi|255764490|r 79 GGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHG 158 (364) Q Consensus 79 ~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~ 158 (364) T Consensus 16 ~~wCPGC-G~~~il~~~~~al~e----------------lg~~~~~~v---~vsGIGCs-~r-----~~-~y~~~~~~ht 68 (280) T PRK11867 16 PRWCPGC-GDGAILAALQRALAE----------------LGLDPENVA---VVSGIGCS-SR-----LP-YYINTYGFHT 68 (280) T ss_pred CCCCCCC-CCHHHHHHHHHHHHH----------------CCCCCCCEE---EEECCCCC-CC-----CH-HHEEECCCCC T ss_conf 7168999-549999999999998----------------399902189---99631577-32-----24-1435367132 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCC-------CCCCCCC Q ss_conf 466767432543100112334444331025665-4302456765443211401110221034-344-------4443232 Q gi|255764490|r 159 IVGAQVSLGTGIAFANKYRRSDKICVVCFGDGA-ANQGQVYESFNIAALWNLNVIYVIENNQ-YAM-------GTSVSRA 229 (364) Q Consensus 159 ~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~lPvifvvenN~-~ai-------st~~~~~ 229 (364) T Consensus 69 ~HGRa~~~AtGiK~a----nPdl~Viv~~GDGD~~~IGgnH--~iHA~rRN~dit~iv~nN~iYGlT~GQ~SpTt~~G~~ 142 (280) T PRK11867 69 IHGRALAFATGLKLA----NPDLTVIVVTGDGDALAIGGNH--FIHALRRNIDITIILFNNQIYGLTKGQYSPTSPVGFV 142 (280) T ss_pred CCCCCHHHHHHHHHH----CCCCEEEEEECCCCHHHCHHHH--HHHHHHHCCCCEEEEECCEEECCCCCCCCCCCCCCCC T ss_conf 457607899999876----8997699992266032023888--9999980898189998882010257855889999887 Q ss_pred CCC---------CCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC Q ss_conf 148---------643577777631111-2100002336887542102455454655898315 Q gi|255764490|r 230 SAQ---------TNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364) Q Consensus 230 ~~~---------~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364) T Consensus 143 t~ttP~G~~~~p~n~~~la~~aGatfVAR~~~~~~~~l~~~ik~A~~h----kGfs~Vevls 200 (280) T PRK11867 143 TKTTPYGSIDPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAINH----KGFSFVEILQ 200 (280) T ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCC----CCCEEEEEEC T ss_conf 677889988799799999997799379864027899999999999669----9967999967 |
|
| >PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.4e-05 Score=55.89 Aligned_cols=170 Identities=20% Similarity=0.272 Sum_probs=100.5 Q ss_pred CCCC-CCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 8987-772205898789999999623899899943006899999742122223432101234434556773211122123 Q gi|255764490|r 75 MGMV-GGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGF 153 (364) Q Consensus 75 qg~i-~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~ 153 (364) T Consensus 7 ~~~~~~~WCPGC-G~~~Il~al~~al~e----------------l~~~~~~~v--i-vSGIGC-s~r~--p~y----~~~ 59 (284) T PRK11869 7 PGSIDIAWCPGC-GNFGIRNSLSKALSE----------------LNLKPRQVA--I-VSGIGQ-AGKM--PHY----INV 59 (284) T ss_pred CCCCCCCCCCCC-CCHHHHHHHHHHHHH----------------CCCCCCCEE--E-EECCCC-CCCC--CCC----EEE T ss_conf 789987578999-758999999999998----------------499933189--9-817567-6204--240----870 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCC-------C Q ss_conf 67667466767432543100112334444331025665-4302456765443211401110221034-3444-------4 Q gi|255764490|r 154 YGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGA-ANQGQVYESFNIAALWNLNVIYVIENNQ-YAMG-------T 224 (364) Q Consensus 154 ~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~lPvifvvenN~-~ais-------t 224 (364) T Consensus 60 ~~~h~lHGRalp~AtGiK~a----nPdL~Viv~~GDGD~~~IGgnH--~iHA~RRN~dit~Iv~nN~iYGlTkGQ~SPTt 133 (284) T PRK11869 60 NGFHTLHGRAIPAATAVKAT----NPNLTVIAEGGDGDMYAEGGNH--LIHAIRRNPDITVLIHNNQIYGLTKGQASPTT 133 (284) T ss_pred CCEECCCCCHHHHHHHHHHH----CCCCEEEEEECCCHHHHHHHHH--HHHHHHCCCCCEEEEECCEECCCCCCCCCCCC T ss_conf 64311667707889999876----8997699981266154302888--99999748980899988810011579889899 Q ss_pred CCCCCCCC---------CCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC Q ss_conf 43232148---------643577777631111-2100002336887542102455454655898315 Q gi|255764490|r 225 SVSRASAQ---------TNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364) Q Consensus 225 ~~~~~~~~---------~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364) T Consensus 134 ~~G~~T~t~P~G~~e~p~np~~la~a~GatfVAR~~~~~~~~l~~~ik~Ai~h----kGfs~VeVls 196 (284) T PRK11869 134 LKGTKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEIIKEAIKH----KGLAIVDIFH 196 (284) T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCC----CCCEEEEEEC T ss_conf 99880557889988899799999997699789987128999999999999679----9817999967 |
|
| >COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0015 Score=42.97 Aligned_cols=153 Identities=24% Similarity=0.322 Sum_probs=88.4 Q ss_pred HHHHHHHHHHHCCCCCEEEECC----CCHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 7899999996238998999430----068999997421222234321012-34434556773211122123676674667 Q gi|255764490|r 88 QEAVIVGMKMSLTEGDQMITAY----REHGHILACGVDASKIMAELTGRQ-GGISKGKGGSMHMFSTKNGFYGGHGIVGA 162 (364) Q Consensus 88 qEa~~vg~~~al~~~D~~~~~y----R~~~~~l~~G~~~~~~~ae~~gk~-~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~ 162 (364) T Consensus 375 e~~~a~~l~~~lp~~~~LFvgNSmpVRdvd~---------------~~~~~~~~~--------v~s-NR---GA~GIDG- 426 (566) T COG1165 375 EAHLAAALADLLPPQDQLFVGNSMPVRDVDA---------------LGQLPAGYR--------VYS-NR---GASGIDG- 426 (566) T ss_pred HHHHHHHHHHHCCCCCEEEEECCCHHHHHHH---------------HCCCCCCCE--------EEC-CC---CCCCCCH- T ss_conf 6699999997589988279745751422887---------------536766852--------356-78---7545301- Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHCC--CH-HHHHHHCCCCCCCC--C-------CCCC Q ss_conf 6743254310011233444433102566543024567654-432114--01-11022103434444--4-------3232 Q gi|255764490|r 163 QVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFN-IAALWN--LN-VIYVIENNQYAMGT--S-------VSRA 229 (364) Q Consensus 163 ~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn-~A~~~~--lP-vifvvenN~~aist--~-------~~~~ 229 (364) T Consensus 427 ~vSTA~Gi~~a~-----~~ptv~liGDLS~----lhD-~NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~fe~~ 496 (566) T COG1165 427 TVSTALGIARAT-----QKPTVALIGDLSF----LHD-LNGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPVFERL 496 (566) T ss_pred HHHHHHHHHHHC-----CCCEEEEEECHHH----HHC-CCHHHHCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCHHHH T ss_conf 677766555521-----7964999700456----521-635765577889759999957986032535677876407776 Q ss_pred CC---CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 14---86435777776311112100002336887542102455454655898315668 Q gi|255764490|r 230 SA---QTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRY 284 (364) Q Consensus 230 ~~---~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~ 284 (364) T Consensus 497 F~tPh~ldF~~la~~y~l~y~~~~s~~------~l~~~~~~~~~~~g~~viEvkt~r~ 548 (566) T COG1165 497 FGTPHGLDFAHLAATYGLEYHRPQSWD------ELGEALDQAWRRSGTTVIEVKTDRS 548 (566) T ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCHH------HHHHHHHHHCCCCCCEEEEEECCHH T ss_conf 179988888999987385610467499------9999987503578827999953866 |
|
| >PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.11 Score=31.06 Aligned_cols=164 Identities=16% Similarity=0.088 Sum_probs=89.7 Q ss_pred CCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 98789999999623899899943006899999742122223432101234434556773211122123676674667674 Q gi|255764490|r 86 IGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVS 165 (364) Q Consensus 86 ~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p 165 (364) T Consensus 11 ~GNeAvA~ga~~Ag--~~v~a~YP----------ITPsT~I~e~la~~~--~~G~~~-~-------~~vq~EsE~-aAi~ 67 (394) T PRK08366 11 SGNYAAAYAALHAR--VQVVAAYP----------ITPQTSIIEKIAEFI--ANGEAD-I-------QYIPVESEH-SAMA 67 (394) T ss_pred EHHHHHHHHHHHHC--CCEEEEEC----------CCCHHHHHHHHHHHH--HCCCCC-E-------EEEEECCHH-HHHH T ss_conf 87999999999969--98899979----------887428999999997--579966-0-------798627789-9999 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCH-HHHHHHH Q ss_conf 3254310011233444433102566543024--567654432114011102210343444443232148643-5777776 Q gi|255764490|r 166 LGTGIAFANKYRRSDKICVVCFGDGAANQGQ--VYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNF-SKRGVSF 242 (364) Q Consensus 166 ~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~--f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i-~~ra~~~ 242 (364) T Consensus 68 a~iGAs~a----G--ara~T----aTSgpGl~LM~E~l~~aag~elP~Vi~~v~R--~~~~~~~i~~dh~D~m~~rd--~ 133 (394) T PRK08366 68 ACIGASAT----G--ARAFT----ATSAQGLALMHEMLHWAAGARLPIVMVDVNR--AMAPPWSVWDDQTDSLSQRD--T 133 (394) T ss_pred HHHHHHHH----C--CCEEE----ECCCCCHHHHHHHHHHHHHCCCCEEEEEEEC--CCCCCCCCCCCHHHHHHCCC--C T ss_conf 99999851----8--77687----4077348877458899987449879999653--78998887610454643577--7 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC Q ss_conf 31111210000233688754210245545465589831566887666 Q gi|255764490|r 243 NIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSM 289 (364) Q Consensus 243 gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~ 289 (364) T Consensus 134 g--~~~l~~~~~QE~~d~~i~Af~iAe~~~~Pviv~~Dgf~~-sh~~ 177 (394) T PRK08366 134 G--WMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFIL-SHTY 177 (394) T ss_pred C--EEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HCCE T ss_conf 7--178836987889999999999999987998996053353-1853 |
|
| >COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-21 Score=155.80 Aligned_cols=217 Identities=21% Similarity=0.249 Sum_probs=159.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH-HHHHH--CCC-------CCEEEEC--CCCHHHH--H-HH Q ss_conf 9999989999999999999978987772205898789999-99962--389-------9899943--0068999--9-97 Q gi|255764490|r 54 SAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIV-GMKMS--LTE-------GDQMITA--YREHGHI--L-AC 118 (364) Q Consensus 54 ~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~v-g~~~a--l~~-------~D~~~~~--yR~~~~~--l-~~ 118 (364) T Consensus 9 ~L~~~A~~iRr~~v~m~~~~~~G----H~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLSKGHaa~AlYa~Lae~ 84 (243) T COG3959 9 ELERIAREIRRNIVRMLANAGSG----HVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHAAPALYATLAEK 84 (243) T ss_pred HHHHHHHHHHHHHHHHHCCCCCC----CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHC T ss_conf 99999999999999986326788----75762109999999999872668788877777769983664138999999981 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH Q ss_conf 421222234321012344345567732111-2212367667466767432543100112334444331025665430245 Q gi|255764490|r 119 GVDASKIMAELTGRQGGISKGKGGSMHMFS-TKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQV 197 (364) Q Consensus 119 G~~~~~~~ae~~gk~~g~~~Gr~gs~H~~~-~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f 197 (364) T Consensus 85 G~~p~eeL~-~~~~~~sr-----L~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~ 158 (243) T COG3959 85 GYFPEEELE-TFRRIGSR-----LPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQV 158 (243) T ss_pred CCCCHHHHH-HHCCCCCC-----CCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCH T ss_conf 898889999-75168985-----889976578986562687655661078888888765289844999955754366527 Q ss_pred HHHHHHHHHCCCH-HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEE Q ss_conf 6765443211401-110221034344444323214864357777763111121000023368875421024554546558 Q gi|255764490|r 198 YESFNIAALWNLN-VIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPII 276 (364) Q Consensus 198 ~Ealn~A~~~~lP-vifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~l 276 (364) T Consensus 159 WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~---~~rP~~ 235 (243) T COG3959 159 WEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGS---KGRPTV 235 (243) T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCC---CCCCEE T ss_conf 99999998705376799994587424776543268520078888438068997584799999999841135---899869 Q ss_pred EEECCCC Q ss_conf 9831566 Q gi|255764490|r 277 IEMLTYR 283 (364) Q Consensus 277 ie~~tyR 283 (364) T Consensus 236 IIa~Tvk 242 (243) T COG3959 236 IIAKTVK 242 (243) T ss_pred EEEECCC T ss_conf 9973565 |
|
| >PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-21 Score=156.63 Aligned_cols=219 Identities=21% Similarity=0.283 Sum_probs=143.9 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCEEEEC--CCCHHHHHHH Q ss_conf 76343888999999999899999999999999789877722058987899999996238-99899943--0068999997 Q gi|255764490|r 42 FEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLT-EGDQMITA--YREHGHILAC 118 (364) Q Consensus 42 ~~~~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al~-~~D~~~~~--yR~~~~~l~~ 118 (364) T Consensus 14 ~dlk~l~~~~l~~la~~---iR~~~i~~v--~~~~---GH~g~~lg~~e~~~aL~~~f~~~rDr~v~s~GH~~Y~hk~Lt 85 (576) T PRK05444 14 ADLRKLSLEELPQLADE---IREFLIDSV--SKTG---GHLGSNLGVVELTVALHYVFDTPKDRIIWDVGHQAYPHKILT 85 (576) T ss_pred HHHHCCCHHHHHHHHHH---HHHHHHHHH--HHCC---CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHC T ss_conf 99860999999999999---999999999--7658---988857479999999985269998848982750755668862 Q ss_pred HHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH Q ss_conf 421-22223432101234434556773211122-1236766746676743254310011233444433102566543024 Q gi|255764490|r 119 GVD-ASKIMAELTGRQGGISKGKGGSMHMFSTK-NGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQ 196 (364) Q Consensus 119 G~~-~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~-~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~ 196 (364) T Consensus 86 G~~~~~~~~r~~~~l-~g---------~~~~~es~~d~~~~G~~g~gls~a~G~A~a~~l~~~~~~v~~~~GDG~l~eGi 155 (576) T PRK05444 86 GRRDRFDTLRQKGGL-SG---------FPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGEDRKVVAVIGDGALTGGM 155 (576) T ss_pred CCHHHHHHHHHCCCC-CC---------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHCCHH T ss_conf 758776314514998-89---------99998788987787876217889999999998469995499998140103314 Q ss_pred HHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCE Q ss_conf 567654432114011102210343444443232148643577777631111-2100002336887542102455454655 Q gi|255764490|r 197 VYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPI 275 (364) Q Consensus 197 f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~ 275 (364) T Consensus 156 s~EA~s~Ag~~~~~liii~~DN~isI~~~vg~~~~----~~~Fea~Gw~~i~~iDGhd~~~i~~al~~ak~----~~~P~ 227 (576) T PRK05444 156 AFEALNNAGDLKSDLIVILNDNEMSISPNVGALSN----YTLFEELGFKYIGPIDGHDLDALVETLKNAKD----LKGPV 227 (576) T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC----CHHHHHCCCEEECCCCCCCHHHHHHHHHHHHH----CCCCE T ss_conf 89999755533887699997798200788654331----01789809948686589899999999998886----69998 Q ss_pred EEEECCCCCCC Q ss_conf 89831566887 Q gi|255764490|r 276 IIEMLTYRYRG 286 (364) Q Consensus 276 lie~~tyR~~g 286 (364) T Consensus 228 lI~~kT~~G~G 238 (576) T PRK05444 228 LLHVVTKKGKG 238 (576) T ss_pred EEEEEEECCCC T ss_conf 99999705667 |
|
| >PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-21 Score=155.47 Aligned_cols=227 Identities=16% Similarity=0.225 Sum_probs=145.3 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCEEEE--CCCCHHHHHHH Q ss_conf 76343888999999999899999999999999789877722058987899999996238-9989994--30068999997 Q gi|255764490|r 42 FEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLT-EGDQMIT--AYREHGHILAC 118 (364) Q Consensus 42 ~~~~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al~-~~D~~~~--~yR~~~~~l~~ 118 (364) T Consensus 10 ~dlk~l~~~~L~~la~---~iR~~~i~~v~--~~~---GH~g~~lg~~el~~alh~~f~~p~Dr~v~s~GH~sY~~~~Lt 81 (581) T PRK12315 10 KDIKKLSLEELEQLAT---EIRTALLEKDS--AHG---GHVGPNLGVVELTIALHYVFNSPKDKIVWDVSHQSYPHKMLT 81 (581) T ss_pred HHHHHCCHHHHHHHHH---HHHHHHHHHHH--HCC---CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHH T ss_conf 9986299999999999---99999999974--438---867857689999999998528988874773761789999995 Q ss_pred HHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH Q ss_conf 4212-222343210123443455677321112212367667466767432543100112334444331025665430245 Q gi|255764490|r 119 GVDA-SKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQV 197 (364) Q Consensus 119 G~~~-~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f 197 (364) T Consensus 82 gr~~~~~~~~~~----~~l----~g~~~~~e~~~d~-~~tG~~g~gls~avGmA~A~~~~~~~~~v~~v~GDG~l~eG~~ 152 (581) T PRK12315 82 GRKEAFLDPDHY----DDV----TGYTNPEESEHDF-FTVGHTSTSIALATGMAKARDLKGEKENIIAVIGDGSLSGGLA 152 (581) T ss_pred CCCCCCCCCHHC----CCC----CCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHH T ss_conf 660116861212----888----8989898888987-7877637899999999999997299984899985513440167 Q ss_pred HHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCC---------CCCCCHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHCCC Q ss_conf 67654432114011102210343444443232---------14864357777763111121-000023368875421024 Q gi|255764490|r 198 YESFNIAALWNLNVIYVIENNQYAMGTSVSRA---------SAQTNFSKRGVSFNIPGMQV-DGMDIRAVKATMDKAVAY 267 (364) Q Consensus 198 ~Ealn~A~~~~lPvifvvenN~~aist~~~~~---------~~~~~i~~ra~~~gi~~~~v-DG~D~~~v~~~~~~a~~~ 267 (364) T Consensus 153 ~EA~~~Ag~~~~nlivi~ddN~isI~~~~~~~~~~~~~~~~~~~~~~~~~fe~~G~~~~~v~DGhd~~~i~~al~~ak~- 231 (581) T PRK12315 153 FEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDLESLIELFKEVKD- 231 (581) T ss_pred HHHHHHHCCCCCCEEEEEECCCEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH- T ss_conf 9998763458985599997688023587307777778877503755010699849868825799999999999999863- Q ss_pred CCCCCCCEEEEECCCCCCCCCC Q ss_conf 5545465589831566887666 Q gi|255764490|r 268 CRAHKGPIIIEMLTYRYRGHSM 289 (364) Q Consensus 268 ~r~~~gP~lie~~tyR~~gHs~ 289 (364) T Consensus 232 ---~~~P~~I~v~T~kG~G~~~ 250 (581) T PRK12315 232 ---IDHPIVLHIHTLKGKGYKP 250 (581) T ss_pred ---CCCCEEEEEEECCCCCCCC T ss_conf ---6999799999678636661 |
|
| >KOG0523 consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.9e-18 Score=135.25 Aligned_cols=213 Identities=20% Similarity=0.279 Sum_probs=148.3 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHHHC--CCC-------CEEEEC--CCC---HHHHHHHHHHH Q ss_conf 9899999999999999789877722058987-89999999623--899-------899943--006---89999974212 Q gi|255764490|r 58 LMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQ-EAVIVGMKMSL--TEG-------DQMITA--YRE---HGHILACGVDA 122 (364) Q Consensus 58 ~M~~~R~~e~~~~~l~~qg~i~g~~~~~~Gq-Ea~~vg~~~al--~~~-------D~~~~~--yR~---~~~~l~~G~~~ 122 (364) T Consensus 13 ~~n~lri~si~~~~~a~sghp~s~----~s~A~~~~vlf~~~m~~~~~~p~~~n~Drfvls~GHa~~llYa~~~l~G~~~ 88 (632) T KOG0523 13 AVNNLRILSIDATSAAKSGHPGSP----LSLAPIMHVLFFEVMRYNPADPYWFNRDRFVLSNGHACPLLYAHWHLAGYDR 88 (632) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCC----CCCCHHHHHHHHHHEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCC T ss_conf 764320566887776426999876----3201145544254323256786777876178765643137889999866574 Q ss_pred HH-H--HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCHHHH Q ss_conf 22-2--343210123443455677321112212367667466767432543100112334-4443310256654302456 Q gi|255764490|r 123 SK-I--MAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRS-DKICVVCFGDGAANQGQVY 198 (364) Q Consensus 123 ~~-~--~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~-~~v~v~~~GDGa~~eG~f~ 198 (364) T Consensus 89 ~edl~~~Rq~~s~t~ghp~~~---------~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~ 159 (632) T KOG0523 89 EEDLKNFRQIGSDTPGHPEPE---------LPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVW 159 (632) T ss_pred HHHHHHHHHHCCCCCCCCCCC---------CCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHH T ss_conf 888877775178899988666---------89834213776315777778998887641244608999768500144188 Q ss_pred HHHHHHHHCCCHHHH-HHHCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEE Q ss_conf 765443211401110-221034344444323214864357-777763111121000023368875421024554546558 Q gi|255764490|r 199 ESFNIAALWNLNVIY-VIENNQYAMGTSVSRASAQTNFSK-RGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPII 276 (364) Q Consensus 199 Ealn~A~~~~lPvif-vvenN~~aist~~~~~~~~~~i~~-ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~l 276 (364) T Consensus 160 Ea~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~-dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~---~k~kpt~ 235 (632) T KOG0523 160 EAMSLAGHLKLDNLVAIYDNNKISIDGATSLGFDE-DVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKS---VKGKPTA 235 (632) T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCC-CHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHH---CCCCCEE T ss_conf 88766402254878999726644578986557674-2788888874855798748588999999865542---2688503 Q ss_pred EEECCCCCCCC Q ss_conf 98315668876 Q gi|255764490|r 277 IEMLTYRYRGH 287 (364) Q Consensus 277 ie~~tyR~~gH 287 (364) T Consensus 236 i~~~t~~g~G~ 246 (632) T KOG0523 236 IKATTFIGRGS 246 (632) T ss_pred EEEEEEEECCC T ss_conf 55455540475 |
|
| >COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=119.66 Aligned_cols=231 Identities=22% Similarity=0.368 Sum_probs=145.3 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCEEEE--CCCCHHHHHHHH Q ss_conf 6343888999999999899999999999999789877722058987899999996238-9989994--300689999974 Q gi|255764490|r 43 EVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLT-EGDQMIT--AYREHGHILACG 119 (364) Q Consensus 43 ~~~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al~-~~D~~~~--~yR~~~~~l~~G 119 (364) T Consensus 13 dLk~ls~~eL~~La~E---iR---~~li~--~vS~~GGHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKiLTG 84 (627) T COG1154 13 DLKKLSIEELPQLADE---IR---EFLLE--VVSATGGHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKILTG 84 (627) T ss_pred HHHHCCHHHHHHHHHH---HH---HHHHH--HHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHCC T ss_conf 9864799999999999---99---99999--8622788647786700344777887179878767756755530677618 Q ss_pred HHHHHHHHHHHCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH Q ss_conf 2122223432101234434--55677321112212367667466767432543100112334444331025665430245 Q gi|255764490|r 120 VDASKIMAELTGRQGGISK--GKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQV 197 (364) Q Consensus 120 ~~~~~~~ae~~gk~~g~~~--Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f 197 (364) T Consensus 85 R~--e~f~tlR-q~~GlsGf~~r~ESe------~D~f~-~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA 154 (627) T COG1154 85 RR--EQFDTLR-QKDGLSGFPKREESE------HDWFG-VGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMA 154 (627) T ss_pred CH--HHCCHHH-HCCCCCCCCCCCCCC------CCCCC-CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHH T ss_conf 65--5323144-329978999965677------76635-57458789887668998874299883799977763300179 Q ss_pred HHHHHHHH-HCCCHHHHHHHCCCCCCCCCCCCCCC-------CC-------C--------------HHHH---------- Q ss_conf 67654432-11401110221034344444323214-------86-------4--------------3577---------- Q gi|255764490|r 198 YESFNIAA-LWNLNVIYVIENNQYAMGTSVSRASA-------QT-------N--------------FSKR---------- 238 (364) Q Consensus 198 ~Ealn~A~-~~~lPvifvvenN~~aist~~~~~~~-------~~-------~--------------i~~r---------- 238 (364) T Consensus 155 ~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~ 234 (627) T COG1154 155 FEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLLV 234 (627) T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCC T ss_conf 99985332304899899980798645877547999999986263577888877999985153789999999975302567 Q ss_pred ----HHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCC--CCCCCCC Q ss_conf ----777631111-21000023368875421024554546558983156688766--6787667 Q gi|255764490|r 239 ----GVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHS--MSDPANY 295 (364) Q Consensus 239 ----a~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs--~~D~~~Y 295 (364) T Consensus 235 ~~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd----~~gPvllHv~T~KGKGY~pAE~d~~~~ 294 (627) T COG1154 235 PGTLFEELGFNYIGPIDGHNLEELIPTLKNAKD----LKGPVLLHVVTKKGKGYKPAEEDPIKY 294 (627) T ss_pred CHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHC----CCCCEEEEEEECCCCCCCHHHCCHHHC T ss_conf 302589818746788587789999999999853----799889999965888888235496535 |
|
| >PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-16 Score=124.02 Aligned_cols=226 Identities=20% Similarity=0.258 Sum_probs=140.1 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCHHHHHHHHHHHC-CCCCE-EEE-CCCCHHHHH Q ss_conf 76343888999999999899999999999999789877722058--98789999999623-89989-994-300689999 Q gi|255764490|r 42 FEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLC--IGQEAVIVGMKMSL-TEGDQ-MIT-AYREHGHIL 116 (364) Q Consensus 42 ~~~~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~--~GqEa~~vg~~~al-~~~D~-~~~-~yR~~~~~l 116 (364) T Consensus 16 ~dlk~l~~~~L~~la~---~iR~l~id~v~--~~s---G--Hpg~~lG~ael~~aL~~~f~~pRDRfVlS~GH~SY~~l~ 85 (642) T PRK12571 16 ADLRALSDAELEQLAD---EIRAEVISAVS--ETG---G--HLGSSLGVVELTVALHAVFNTPRDKLVWDVGHQCYPHKL 85 (642) T ss_pred HHHHHCCHHHHHHHHH---HHHHHHHHHHH--HCC---C--CCCCCHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHH T ss_conf 9987299999999999---99999999997--658---9--788666799999999872499988779848568899999 Q ss_pred HHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH Q ss_conf 97421-22223432101234434556773211122123676674667674325431001123344443310256654302 Q gi|255764490|r 117 ACGVD-ASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQG 195 (364) Q Consensus 117 ~~G~~-~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG 195 (364) T Consensus 86 LtG~~d~lk~fRq~gs~-tGhp~~~--------et~~~~~~~G~~g~gls~AvGmA~A~~l~~~d~~v~~i~GDG~LmEG 156 (642) T PRK12571 86 LTGRRDQFRTLRQKGGL-SGFTKRS--------ESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAG 156 (642) T ss_pred HHCCHHHHHHHHCCCCC-CCCCCCC--------CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHH T ss_conf 86888787517606999-9978699--------88989878776535889999999999856999708999757144405 Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCC-------CCC----------H--------H-------------- Q ss_conf 456765443211401110221034344444323214-------864----------3--------5-------------- Q gi|255764490|r 196 QVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASA-------QTN----------F--------S-------------- 236 (364) Q Consensus 196 ~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~-------~~~----------i--------~-------------- 236 (364) T Consensus 157 vs~EA~slAGhl~~kLIvi~DDN~iSIdg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (642) T PRK12571 157 MAYEALNNAGAADRRLIVILNDNEMSIAPPVGALANYLSTLRSSDPFATLRAIAKGVEERLPGPLRDGARRARELVTGMP 236 (642) T ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC T ss_conf 89999985140368769999438744277731788999998834408999999999986064468999999998753378 Q ss_pred ---HHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC Q ss_conf ---77777631111-210000233688754210245545465589831566887666 Q gi|255764490|r 237 ---KRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSM 289 (364) Q Consensus 237 ---~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~ 289 (364) T Consensus 237 ~~~~~~e~~g~~~~~p~dghd~~~~~~~l~~ak~~---~~~P~~i~~~t~kg~g~~~ 290 (642) T PRK12571 237 GGGTLFEELGFTYVGPIDGHDMEALLSVLRAARAR---ATGPVLVHVVTEKGKGYAP 290 (642) T ss_pred CCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEEEHHHHHCCCCH T ss_conf 76506787387766787877899999999999972---5998575201476337753 |
|
| >TIGR00232 tktlase_bact transketolase; InterPro: IPR005478 Transketolase (EC 2 | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-19 Score=145.78 Aligned_cols=218 Identities=22% Similarity=0.345 Sum_probs=152.3 Q ss_pred HHH--HHHH--HHHHHCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCC Q ss_conf 421--2222--343210123443455677321-11221236766746676743254310011233----------44443 Q gi|255764490|r 119 GVD--ASKI--MAELTGRQGGISKGKGGSMHM-FSTKNGFYGGHGIVGAQVSLGTGIAFANKYRR----------SDKIC 183 (364) Q Consensus 119 G~~--~~~~--~ae~~gk~~g~~~Gr~gs~H~-~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~----------~~~v~ 183 (364) T Consensus 75 GyDls~EdLk~FRQ~~s~TPG---------HPE~~~~~Gve~TTGPLGQGianAVGmA~A~~~LAa~fn~~~~~~~DHyT 145 (675) T TIGR00232 75 GYDLSIEDLKQFRQLHSKTPG---------HPEFGHTAGVEATTGPLGQGIANAVGMAIAERTLAATFNKPGFEIVDHYT 145 (675) T ss_pred CCCCCHHHHHCCCCCCCCCCC---------CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECEE T ss_conf 036666888237322301788---------88777888702311873013577999999999999970879694431207 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCHHHH-HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HC-CHHHHHHHH Q ss_conf 310256654302456765443211401110-221034344444323214864357777763111121-00-002336887 Q gi|255764490|r 184 VVCFGDGAANQGQVYESFNIAALWNLNVIY-VIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQV-DG-MDIRAVKAT 260 (364) Q Consensus 184 v~~~GDGa~~eG~f~Ealn~A~~~~lPvif-vvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~v-DG-~D~~~v~~~ 260 (364) T Consensus 146 Yv~~GDGcLqEGiS~E~asLAG~l~LgkLI~lYDsN~IsiDG~~~~~F~E-dv~~RFeA~gW~Vl~~~DG~~D~~~I~~A 224 (675) T TIGR00232 146 YVIVGDGCLQEGISYEAASLAGHLKLGKLIVLYDSNRISIDGAVDGSFSE-DVKKRFEAYGWEVLEVEDGNHDLEAIAAA 224 (675) T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCEEECCCCCHHHHH-HHHHHHHHCCCEEEEECCCCCCHHHHHHH T ss_conf 89973775566378999988766322866899736835643430100100-14534410585585405745307999999 Q ss_pred HHHHCCCCCCCCCCEEEEECCCCCCCC-CCCC----CCCCCCHHHHHHHHHHC--CH---------HH-HHHHHHHHCCC Q ss_conf 542102455454655898315668876-6678----76678999999989838--93---------79-99999998789 Q gi|255764490|r 261 MDKAVAYCRAHKGPIIIEMLTYRYRGH-SMSD----PANYRTREEINEMRSNH--DP---------IE-QVRKRLLHNKW 323 (364) Q Consensus 261 ~~~a~~~~r~~~gP~lie~~tyR~~gH-s~~D----~~~YR~~~Ei~~~~~~~--DP---------I~-~~~~~L~~~g~ 323 (364) T Consensus 225 i~~Ak~---~~dKPTlI~v~T~IGfGsp~~~g~~~~HGapL~~~~~~~~~~~~~~~~~~sF~~P~evyd~~~~~v~e~G~ 301 (675) T TIGR00232 225 IEEAKA---SKDKPTLIEVKTTIGFGSPNKEGTEGVHGAPLGKEEVKLTKKNLGWNYNPSFEVPQEVYDHFKKTVKERGA 301 (675) T ss_pred HHHHHH---CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 999873---07897168998775036877788866788898868999999971888777753765688899999998657 Q ss_pred CCHHHHHHHHHHHHHH-HHHHHHHHHH Q ss_conf 9989999999999999-9999999984 Q gi|255764490|r 324 ASEGDLKEIEMNVRKI-INNSVEFAQS 349 (364) Q Consensus 324 ~te~e~~~i~~~~~~~-v~~a~~~A~~ 349 (364) T Consensus 302 ~~~~~Wn~~f~~yk~~yP~~~~~f~~~ 328 (675) T TIGR00232 302 KAEQEWNELFAKYKKKYPELAAEFERR 328 (675) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 799999999999988617899999998 |
2.1.1) (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. This group includes two proteins from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. ; GO: 0004802 transketolase activity. |
| >PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-10 Score=86.52 Aligned_cols=208 Identities=17% Similarity=0.178 Sum_probs=131.3 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCC-CCHHHHHHHHHHHHC Q ss_conf 10123443455677321112212367667466767432543100112334-4443310256654-302456765443211 Q gi|255764490|r 130 TGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRS-DKICVVCFGDGAA-NQGQVYESFNIAALW 207 (364) Q Consensus 130 ~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~-~~v~v~~~GDGa~-~eG~f~Ealn~A~~~ 207 (364) T Consensus 43 i~~~tGCs~v~~g~~p~t~--~~~~~ih~~f~~~~a~asGi~~Alk~~~~~d~~Viv~~GDG~~~dIG~--~~l~ha~~R 118 (300) T PRK11864 43 LVIPASCSTVIQGLWPKSA--LAVPIVHTAFAATAAVASGIEEALKVRGEKGHVVVVWAGDGGTADIGF--QALSGAAER 118 (300) T ss_pred EEECCCCCEEECCCCCCCC--CCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHH--HHHHHHHHC T ss_conf 9978862101157687875--441667777412267799999999970899867999924752654006--878999982 Q ss_pred CCHHHHHHHCCC-CC-------CCCCCC---------CCCCCCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCC Q ss_conf 401110221034-34-------444432---------32148643577777631111-2100002336887542102455 Q gi|255764490|r 208 NLNVIYVIENNQ-YA-------MGTSVS---------RASAQTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCR 269 (364) Q Consensus 208 ~lPvifvvenN~-~a-------ist~~~---------~~~~~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r 269 (364) T Consensus 119 n~~i~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~ttp~Gk~~~kkdl~~i~~a~g~~YVA~~~~a~~~~l~~~i~kA~~~-- 196 (300) T PRK11864 119 GHDILYIMYDNEAYMNTGIQRSGSTPYGAWTTTTPGGKRERKKPVADIMAAHGVPYVATASIAYPEDFIRKLKKAAEI-- 196 (300) T ss_pred CCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCC-- T ss_conf 898599998571310468846888988542455899987899899999997599879998556999999999999718-- Q ss_pred CCCCCEEEEECCCCCCCCCCCC-----------CCCCCCHHHHHH-------------HHHHCCHHHHHHHHHHHCC--- Q ss_conf 4546558983156688766678-----------766789999999-------------8983893799999999878--- Q gi|255764490|r 270 AHKGPIIIEMLTYRYRGHSMSD-----------PANYRTREEINE-------------MRSNHDPIEQVRKRLLHNK--- 322 (364) Q Consensus 270 ~~~gP~lie~~tyR~~gHs~~D-----------~~~YR~~~Ei~~-------------~~~~~DPI~~~~~~L~~~g--- 322 (364) T Consensus 197 --~G~s~i~v~spCp~gw~~~~~~t~~~~klAVesg~wpLye~~~g~~~~~~~~~~~~~~~~~~p---v~eyl~~q~Rf~ 271 (300) T PRK11864 197 --PGFKFIHLLAPCPPGWRFDPAKTIEIARLAVETGAWPLFEYENGKFKLNPPSTTLADKKKRKP---VEEYLKLQGRFK 271 (300) T ss_pred --CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCEEECCCCCCCCCCCCCCCC---HHHHHHHCCCCH T ss_conf --998799997889565886813689999999980995379977897650588755457778879---999976274621 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99989999999999999999999998 Q gi|255764490|r 323 WASEGDLKEIEMNVRKIINNSVEFAQ 348 (364) Q Consensus 323 ~~te~e~~~i~~~~~~~v~~a~~~A~ 348 (364) T Consensus 272 hL~~e~~~~~q~~vd~~we~l~~lae 297 (300) T PRK11864 272 HLTEEDIKALQEEIEEEWEEILKLAK 297 (300) T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 04999999999999999999999998 |
|
| >pfam09364 XFP_N XFP N-terminal domain | Back alignment and domain information |
|---|
Probab=98.66 E-value=2e-07 Score=67.68 Aligned_cols=178 Identities=19% Similarity=0.255 Sum_probs=108.1 Q ss_pred CCCCCCCCHHHHHHHHHHHCCCC--CEEEECCCCHH--HHHHHHHHHHHHHHHHHCCC----CC-------CCCCCCCCC Q ss_conf 72205898789999999623899--89994300689--99997421222234321012----34-------434556773 Q gi|255764490|r 80 GFCHLCIGQEAVIVGMKMSLTEG--DQMITAYREHG--HILACGVDASKIMAELTGRQ----GG-------ISKGKGGSM 144 (364) Q Consensus 80 g~~~~~~GqEa~~vg~~~al~~~--D~~~~~yR~~~--~~l~~G~~~~~~~ae~~gk~----~g-------~~~Gr~gs~ 144 (364) T Consensus 48 GHWGT~PGlnfiYaHlNr~I~~~dl~mi~i~GPGHGgpa~~an-~yLeGtyse~YP~i~~d~~Gm~~lfkqFSfPgGipS 126 (379) T pfam09364 48 GHWGTSPGLSFLYAHLNRIINKYDQNMLYVVGPGHGGPAMVSP-SYLEGSYSEFYPEITFDEEGLKKLFKQFSFPGGIPS 126 (379) T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-HHCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCCC T ss_conf 7577870499999998899874588769985698762555544-430343222178998688999999984899898767 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC----------HHHHH Q ss_conf 21112212367667466767432543100112334444331025665430245676544321140----------11102 Q gi|255764490|r 145 HMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNL----------NVIYV 214 (364) Q Consensus 145 H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~l----------Pvifv 214 (364) T Consensus 127 H~~petPGsIhEGGELGYsLshA~GAv~----DnPdLiva~VvGDGEaETGP------lAtsWhsnkFlnP~~dGaVLPI 196 (379) T pfam09364 127 HMAPETPGSIHEGGELGYALSHAYGAVF----DNPDLIVACVVGDGEAETGP------LATSWHSNKFLNPATDGAVLPI 196 (379) T ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCC----CCCCEEEEEEECCCCCCCCC------CHHHHCCCCCCCCCCCCCCCEE T ss_conf 6789999742457530135564305645----89886899974686323574------1011144433581336640302 Q ss_pred HHCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC Q ss_conf 21034344444323-2148643577777631111210000233688754210245 Q gi|255764490|r 215 IENNQYAMGTSVSR-ASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYC 268 (364) Q Consensus 215 venN~~aist~~~~-~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~ 268 (364) T Consensus 197 LhLNGyKI~npTilar~~~~EL~~lf~G~Gy~p~~Veg~d~~~~h~~mA~~ld~~ 251 (379) T pfam09364 197 LHLNGYKISNPTILARISDEELRKLFEGYGYEPYFVEGHDPESMHRLMAETLDWA 251 (379) T ss_pred EECCCCCCCCCEEECCCCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHH T ss_conf 4205631268745322898999999842798417970798588999999999999 |
Bacterial enzyme splits fructose-6-P and/or xylulose-5-P with the aid of inorganic phosphate into either acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. This family is distantly related to transketolases e.g. pfam02779. |
| >PRK05261 putative phosphoketolase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.1e-08 Score=70.61 Aligned_cols=175 Identities=21% Similarity=0.269 Sum_probs=105.3 Q ss_pred CCCCCHHHHHHHHHHHCCCC--CEEEECCCCHH--HHHHHHHHHHHHHHHHHCC----CCC-------CCCCCCCCCCCC Q ss_conf 05898789999999623899--89994300689--9999742122223432101----234-------434556773211 Q gi|255764490|r 83 HLCIGQEAVIVGMKMSLTEG--DQMITAYREHG--HILACGVDASKIMAELTGR----QGG-------ISKGKGGSMHMF 147 (364) Q Consensus 83 ~~~~GqEa~~vg~~~al~~~--D~~~~~yR~~~--~~l~~G~~~~~~~ae~~gk----~~g-------~~~Gr~gs~H~~ 147 (364) T Consensus 54 GT~pGlnfiYaHlNr~I~~~~~~~~~i~GPGHGgpa~~an-~yLeGtyse~yp~i~~d~~Gl~~l~~qFS~pgGi~SH~~ 132 (786) T PRK05261 54 GTTPGLNFIYAHLNRLIRKYDLDMIYIAGPGHGGPAMVAN-AYLEGTYSEIYPEISQDEEGMKRLFKQFSFPGGIPSHAA 132 (786) T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-HHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC T ss_conf 7882499999998898740587459995488668888777-665276602367889788999999984899898756678 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH----------HHHHHHC Q ss_conf 122123676674667674325431001123344443310256654302456765443211401----------1102210 Q gi|255764490|r 148 STKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLN----------VIYVIEN 217 (364) Q Consensus 148 ~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lP----------vifvven 217 (364) T Consensus 133 petPGsIhEGGELGYsLsha~GA~l----DnPdliva~vvGDGEaETGp------lAtsW~s~kflnP~~dGaVLPILhL 202 (786) T PRK05261 133 PETPGSIHEGGELGYSLSHAYGAAF----DNPDLIVACVVGDGEAETGP------LAASWHSNKFLNPATDGAVLPILHL 202 (786) T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCC----CCCCEEEEEEECCCCCCCCC------CCHHCCCCCCCCCCCCCCCCEEEEE T ss_conf 8999730346421256776615755----89985999983586101585------4000045433581347631015741 Q ss_pred CCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC Q ss_conf 3434444432-32148643577777631111210000233688754210245 Q gi|255764490|r 218 NQYAMGTSVS-RASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYC 268 (364) Q Consensus 218 N~~aist~~~-~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~ 268 (364) T Consensus 203 NG~KI~npTilar~~~~eL~~lf~G~Gy~P~~Veg~dp~~~h~~mA~ald~a 254 (786) T PRK05261 203 NGYKIANPTILARISDEELESLFRGYGYEPIFVEGDDPADMHQEMAAALDTA 254 (786) T ss_pred CCCCCCCCEEECCCCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHH T ss_conf 5731368712213787999999862798856965888799999999999999 |
|
| >cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.1e-08 Score=74.07 Aligned_cols=122 Identities=20% Similarity=0.307 Sum_probs=88.4 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC------- Q ss_conf 3455677321112212367667466767432543100112334444331025665430245676544321140------- Q gi|255764490|r 137 SKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNL------- 209 (364) Q Consensus 137 ~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~l------- 209 (364) T Consensus 41 S~pgGipSH~~PetPGsIhEGGELGYsLshA~GA~~----DnPdliva~VvGDGEaETGP------lAtsW~s~kflnP~ 110 (227) T cd02011 41 SFPGGIPSHAAPETPGSIHEGGELGYSLSHAYGAVF----DNPDLIVACVVGDGEAETGP------LATSWHSNKFLNPA 110 (227) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC----CCCCEEEEEEECCCCCCCCC------CHHHHCCCCCCCCC T ss_conf 998987677789999750667630235554305534----89986999985686323584------12222220015833 Q ss_pred ---HHHHHHHCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC Q ss_conf ---111022103434444432-32148643577777631111210000233688754210245 Q gi|255764490|r 210 ---NVIYVIENNQYAMGTSVS-RASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYC 268 (364) Q Consensus 210 ---PvifvvenN~~aist~~~-~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~ 268 (364) T Consensus 111 ~dGaVLPIlhLNGyKIsnpTilar~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~mA~~ld~a 173 (227) T cd02011 111 TDGAVLPILHLNGYKISNPTILARISHEELEALFRGYGYEPYFVEGDDPETMHQAMAATLDWA 173 (227) T ss_pred CCCCEEEEEECCCCCCCCCEEECCCCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHH T ss_conf 477244577416740268854312798999999841898217977898068999999999999 |
This enzyme requires divalent magnesium ions and TPP for activity. |
| >COG3960 Glyoxylate carboligase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.4e-06 Score=57.33 Aligned_cols=162 Identities=21% Similarity=0.295 Sum_probs=112.9 Q ss_pred HHHHHHHHHCCCCCCCCCCCCC-------CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 2222343210123443455677-------32111221236-766746676743254310011233444433102566543 Q gi|255764490|r 122 ASKIMAELTGRQGGISKGKGGS-------MHMFSTKNGFY-GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAAN 193 (364) Q Consensus 122 ~~~~~ae~~gk~~g~~~Gr~gs-------~H~~~~~~~~~-~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~ 193 (364) T Consensus 375 vyeemn~~fgrd~~yvstiglsqia~aqflhv~~pr~wincgqagplgwtipaalgv~~a----dp~r~vvalsgdydfq 450 (592) T COG3960 375 VYEEMNKAFGRDVCYVTTIGLSQIAAAQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAA----DPKRNVVAISGDYDFQ 450 (592) T ss_pred HHHHHHHHCCCCCEEEEECCHHHHHHHHHEEECCCCCEEECCCCCCCCCCCCHHHCEEEC----CCCCCEEEEECCCHHH T ss_conf 999998651886059974157777444431104774401047667765554144312422----8887569850572078 Q ss_pred CHHHHHHHHHHHHCCCHHHHHHHCCCCC---------CCCCCCCCCCCCCHH------------HHHHHHHHHHHHHHCC Q ss_conf 0245676544321140111022103434---------444432321486435------------7777763111121000 Q gi|255764490|r 194 QGQVYESFNIAALWNLNVIYVIENNQYA---------MGTSVSRASAQTNFS------------KRGVSFNIPGMQVDGM 252 (364) Q Consensus 194 eG~f~Ealn~A~~~~lPvifvvenN~~a---------ist~~~~~~~~~~i~------------~ra~~~gi~~~~vDG~ 252 (364) T Consensus 451 --fmieelavgaq~k~pyihv~vnnaylglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv--~ 526 (592) T COG3960 451 --FLIEELAVGAQFKIPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV--F 526 (592) T ss_pred --HHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEHHCCCCEEEEE--C T ss_conf --789988622103685589996213789999987458953143330102688433566753001101267406881--5 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCC Q ss_conf 023368875421024554546558983156688766678 Q gi|255764490|r 253 DIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSD 291 (364) Q Consensus 253 D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D 291 (364) T Consensus 527 ~p~e~a~af~~a~~lm~eh~vpvvve~ilervtnismgt 565 (592) T COG3960 527 KPEDIAPAFEQAKALMAQHRVPVVVEVILERVTNISMGT 565 (592) T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHCCCCCC T ss_conf 877858999999999985679756104777750100023 |
|
| >COG3957 Phosphoketolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=7.6e-06 Score=57.59 Aligned_cols=118 Identities=22% Similarity=0.269 Sum_probs=78.7 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--CC----CHHHHH Q ss_conf 677321112212367667466767432543100112334444331025665430245676544321--14----011102 Q gi|255764490|r 141 GGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAAL--WN----LNVIYV 214 (364) Q Consensus 141 ~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~--~~----lPvifv 214 (364) T Consensus 136 Gi~SH~~petPGsIhEGGeLGy~l~ha~gAa~----d~Pdli~~~vvGDGeaetgplats--Whs~kf~np~~dGavLPI 209 (793) T COG3957 136 GIGSHVAPETPGSIHEGGELGYALSHAYGAAF----DNPDLIVACVVGDGEAETGPLATS--WHSNKFLNPARDGAVLPI 209 (793) T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC----CCCCCEEEEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCEEEE T ss_conf 86444588899764767522488999877501----799857999942663335763000--122234574336732357 Q ss_pred HHCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 2103434444432321-4864357777763111121000023368875421 Q gi|255764490|r 215 IENNQYAMGTSVSRAS-AQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKA 264 (364) Q Consensus 215 venN~~aist~~~~~~-~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a 264 (364) T Consensus 210 L~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~mAa~ 260 (793) T COG3957 210 LHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLMAAV 260 (793) T ss_pred EEECCEECCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH T ss_conf 874361015864555167699999985179840585589867763457899 |
|
| >TIGR01504 glyox_carbo_lig glyoxylate carboligase; InterPro: IPR006397 This family represents glyoxylate carboligase, also called tartronate-semialdehyde synthase | Back alignment and domain information |
|---|
Probab=97.46 E-value=6.1e-05 Score=51.80 Aligned_cols=162 Identities=22% Similarity=0.288 Sum_probs=118.5 Q ss_pred HHHHHHHHHCCCCCCCCCCCCC-------CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 2222343210123443455677-------32111221236-766746676743254310011233444433102566543 Q gi|255764490|r 122 ASKIMAELTGRQGGISKGKGGS-------MHMFSTKNGFY-GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAAN 193 (364) Q Consensus 122 ~~~~~ae~~gk~~g~~~Gr~gs-------~H~~~~~~~~~-~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~ 193 (364) T Consensus 374 vyeemnkafG~~~~yv~tiGlsqia~aq~lhvy~~r~WinCGqaGPlGWt~PaalGv~~a----dP~~~~va~sGdydf- 448 (593) T TIGR01504 374 VYEEMNKAFGRDVTYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTVPAALGVAAA----DPERQVVALSGDYDF- 448 (593) T ss_pred HHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHC----CCCCCEEEEECCCHH- T ss_conf 888877640776226653014566665544310366412057768742023455202114----877617898445237- Q ss_pred CHHHHHHHHHHHHCCCHHHHHHHCCCCC-C---------------------CCC-CCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 0245676544321140111022103434-4---------------------444-3232148643577777631111210 Q gi|255764490|r 194 QGQVYESFNIAALWNLNVIYVIENNQYA-M---------------------GTS-VSRASAQTNFSKRGVSFNIPGMQVD 250 (364) Q Consensus 194 eG~f~Ealn~A~~~~lPvifvvenN~~a-i---------------------st~-~~~~~~~~~i~~ra~~~gi~~~~vD 250 (364) T Consensus 449 -qf~~eelavGaq~~~Py~hv~vnn~ylGlirq~qr~f~~dy~v~l~fenin~~~~~~~~yGvdhv~vae~lGCka~rv- 526 (593) T TIGR01504 449 -QFLIEELAVGAQHKIPYIHVLVNNAYLGLIRQAQRAFDMDYEVSLAFENINSSGDEVAGYGVDHVKVAEGLGCKAIRV- 526 (593) T ss_pred -HHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCEEEE- T ss_conf -888887620320037668999613024455542110010157865100036777533244421312221037206884- Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCC Q ss_conf 00023368875421024554546558983156688766678 Q gi|255764490|r 251 GMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSD 291 (364) Q Consensus 251 G~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D 291 (364) T Consensus 527 -~~P~~~~~a~~~a~~l~~~~rvPvv~e~ilervtnism~~ 566 (593) T TIGR01504 527 -TKPEELAAALEQAKKLMAEHRVPVVVEVILERVTNISMGG 566 (593) T ss_pred -CCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCC T ss_conf -0827789999999999984688521032565553101234 |
It releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. ; GO: 0009028 tartronate-semialdehyde synthase activity, 0009436 glyoxylate catabolic process. |
| >COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.42 E-value=5e-06 Score=58.79 Aligned_cols=123 Identities=21% Similarity=0.221 Sum_probs=80.6 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH-HHHHHHCCCCCCCCCCCCCCCCCCHHHH----HHHHHH-------- Q ss_conf 344443310256654302456765443211401-1102210343444443232148643577----777631-------- Q gi|255764490|r 178 RSDKICVVCFGDGAANQGQVYESFNIAALWNLN-VIYVIENNQYAMGTSVSRASAQTNFSKR----GVSFNI-------- 244 (364) Q Consensus 178 ~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lP-vifvvenN~~aist~~~~~~~~~~i~~r----a~~~gi-------- 244 (364) T Consensus 219 ~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVrgng---kiiqelE~~FrgaGWnVikviWg 295 (887) T COG2609 219 TSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNG---KIIQELEGIFRGAGWNVIKVIWG 295 (887) T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCC---HHHHHHHHHHCCCCCEEEEEEEC T ss_conf 778739999557556770356899999984667549999656110588414773---54999998860378518999724 Q ss_pred -------------------------------------------------------------HHHHHHCCHHHHHHHHHHH Q ss_conf -------------------------------------------------------------1112100002336887542 Q gi|255764490|r 245 -------------------------------------------------------------PGMQVDGMDIRAVKATMDK 263 (364) Q Consensus 245 -------------------------------------------------------------~~~~vDG~D~~~v~~~~~~ 263 (364) T Consensus 296 ~~wd~ll~~d~~gkL~~~m~e~~dgdyqt~ka~dGayvRehff~~~pe~~aLVa~~tD~diw~L~rGGHD~~kv~aA~~~ 375 (887) T COG2609 296 RRWDELLAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWALNRGGHDPEKVYAAFKK 375 (887) T ss_pred CCHHHHHCCCCCCHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 40788860367446999998565523666400563999998715675889999863688999986379987999999999 Q ss_pred HCCCCCCCCCCEEEEECCCCCCC---CCCCC---CC-CCCCHHHHHHHHH Q ss_conf 10245545465589831566887---66678---76-6789999999898 Q gi|255764490|r 264 AVAYCRAHKGPIIIEMLTYRYRG---HSMSD---PA-NYRTREEINEMRS 306 (364) Q Consensus 264 a~~~~r~~~gP~lie~~tyR~~g---Hs~~D---~~-~YR~~~Ei~~~~~ 306 (364) T Consensus 376 A~~~---kg~PtvilA~TIKGyglg~~~eg~n~aHq~kkm~~~~l~~~Rd 422 (887) T COG2609 376 AQEH---KGRPTVILAKTIKGYGLGEAAEGKNIAHQVKKMTPDQLKEFRD 422 (887) T ss_pred HHCC---CCCCEEEEEEEECCCCCCHHHCCCCHHHHHHCCCHHHHHHHHH T ss_conf 8537---8997599976302466770101366355562389999999986 |
|
| >TIGR00759 aceE 2-oxo-acid dehydrogenase E1 component, homodimeric type; InterPro: IPR004660 Most members of this family are pyruvate dehydrogenase complex, E1 component | Back alignment and domain information |
|---|
Probab=97.94 E-value=9e-06 Score=57.12 Aligned_cols=154 Identities=19% Similarity=0.202 Sum_probs=95.6 Q ss_pred CCCCCCCCCCCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHCCCCCCCCCCCCCCC-CCCHHH Q ss_conf 254310011233-------4444331025665430245676544321140-1110221034344444323214-864357 Q gi|255764490|r 167 GTGIAFANKYRR-------SDKICVVCFGDGAANQGQVYESFNIAALWNL-NVIYVIENNQYAMGTSVSRASA-QTNFSK 237 (364) Q Consensus 167 A~G~A~a~k~~~-------~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~l-PvifvvenN~~aist~~~~~~~-~~~i~~ 237 (364) T Consensus 203 AIYQARF~kYL~~RGlk~~~d~~VwaFLGDGEMDEPES~Ga~~~AarE~LDNL~FviNCNLQRLDGPVrGNGKIIQELEs 282 (905) T TIGR00759 203 AIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLVFVINCNLQRLDGPVRGNGKIIQELES 282 (905) T ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH T ss_conf 99998987765404774202775899847875571877999876655237541788632130368754157412011243 Q ss_pred HHHHHHH---------------------------------------------------------------------HHHH Q ss_conf 7777631---------------------------------------------------------------------1112 Q gi|255764490|r 238 RGVSFNI---------------------------------------------------------------------PGMQ 248 (364) Q Consensus 238 ra~~~gi---------------------------------------------------------------------~~~~ 248 (364) T Consensus 283 lF~GAGWNVIKV~WGS~WD~Ll~~D~~G~L~~~m~~~vDG~yQT~kA~DGaY~REHFFn~~Pel~ALV~dmsD~dIw~Ln 362 (905) T TIGR00759 283 LFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALN 362 (905) T ss_pred HCCCCCCEEEEEECCCHHHHHHHHCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCCCCCCHHHHHHHHCCCHHHHHHHC T ss_conf 12688831788840885689987151337899985258973000002688631043468887899986167878999740 Q ss_pred HHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC---CCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCC Q ss_conf 10000233688754210245545465589831566887---666787667899999998983893799999999878999 Q gi|255764490|r 249 VDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRG---HSMSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWAS 325 (364) Q Consensus 249 vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~g---Hs~~D~~~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~t 325 (364) T Consensus 363 RGGHD~~K~YAAy~~A~~~---KG~PTvILAkTiKGYg~g~~~e~rN----~AHQ~KK--l~~~~lk~fRD~f-~lP-ls 431 (905) T TIGR00759 363 RGGHDPRKVYAAYAAAQEH---KGKPTVILAKTIKGYGLGDAAEARN----VAHQVKK--LEVDALKEFRDRF-ELP-LS 431 (905) T ss_pred CCCCCHHHHHHHHHHHHCC---CCCCEEEECCCCCCCCCCHHHHHCC----HHHHHCC--CCHHHHHHHHHHC-CCC-CC T ss_conf 6799738899999998628---9984786054346646764332201----3553056--6878898420002-488-77 Q ss_pred HHHHHH Q ss_conf 899999 Q gi|255764490|r 326 EGDLKE 331 (364) Q Consensus 326 e~e~~~ 331 (364) T Consensus 432 D~QvE~ 437 (905) T TIGR00759 432 DAQVEK 437 (905) T ss_pred HHHHHH T ss_conf 677730 |
It includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogenase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of Escherichia coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity. ; GO: 0016491 oxidoreductase activity. |
| >cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.06 Score=32.62 Aligned_cols=159 Identities=17% Similarity=0.238 Sum_probs=86.3 Q ss_pred CCCCCCCCCCCCC-CCHHHHHHHH--HHHHCCCHHHHHHHCCC-CC-------CCCCC---------CCCCCCCCHHHHH Q ss_conf 4443310256654-3024567654--43211401110221034-34-------44443---------2321486435777 Q gi|255764490|r 180 DKICVVCFGDGAA-NQGQVYESFN--IAALWNLNVIYVIENNQ-YA-------MGTSV---------SRASAQTNFSKRG 239 (364) Q Consensus 180 ~~v~v~~~GDGa~-~eG~f~Ealn--~A~~~~lPvifvvenN~-~a-------ist~~---------~~~~~~~~i~~ra 239 (364) T Consensus 151 kkSvWivGGDGWAYDIG~--gGLdHVLAs--G~nVNvLVlDtE~YsNTGgQ~SkaTp~ga~akfa~~Gk~~~KKDl~~ia 226 (365) T cd03377 151 KKSVWIIGGDGWAYDIGY--GGLDHVLAS--GENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIA 226 (365) T ss_pred CCCEEEECCCCHHHHCCC--CHHHHHHHC--CCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHH T ss_conf 553588746612320363--115677745--8972899965865557775335688640443104357654413299999 Q ss_pred HHHHHHHH-HH-HCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC-CC------------CC----CCCCHHH Q ss_conf 77631111-21-0000233688754210245545465589831566887666-78------------76----6789999 Q gi|255764490|r 240 VSFNIPGM-QV-DGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSM-SD------------PA----NYRTREE 300 (364) Q Consensus 240 ~~~gi~~~-~v-DG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~-~D------------~~----~YR~~~E 300 (364) T Consensus 227 m~~g~vYVA~va~ga~~~q~lka~~eA~~~----~GPs~i~aysPC~-~hg~~~~~~~~~~~~k~AV~sGyWpLyrynP~ 301 (365) T cd03377 227 MSYGNVYVAQIALGANDNQTLKAFREAEAY----DGPSLIIAYSPCI-AHGIKGGMTKSQEQQKLAVESGYWPLYRYNPR 301 (365) T ss_pred HHCCCCEEEEEECCCCHHHHHHHHHHHHCC----CCCEEEEEECCCC-CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCH T ss_conf 976996699961689999999999998678----9986998877874-13778775568999999998597057624715 Q ss_pred HHHHHHHCCH--------HHHHHHHHHHCCCC------CHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9998983893--------79999999987899------9899999999999999999999984 Q gi|255764490|r 301 INEMRSNHDP--------IEQVRKRLLHNKWA------SEGDLKEIEMNVRKIINNSVEFAQS 349 (364) Q Consensus 301 i~~~~~~~DP--------I~~~~~~L~~~g~~------te~e~~~i~~~~~~~v~~a~~~A~~ 349 (364) T Consensus 302 l~~--~gk~pf~LDsk~p~~~~~~fl~~e~Rf~~L~k~~Pe~A~~L~~~~~~~v~~r~~~~~~ 362 (365) T cd03377 302 LVE--EGKNPLQLDSKEPDGPVEEFLNNENRFAALKKANPERAEQLFEQLQADAKERYKRYKR 362 (365) T ss_pred HHH--CCCCCCEECCCCCCCCHHHHHHHCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 665--7999833068899966999986246799984518399999999999999999999999 |
This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra |
| >cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.073 Score=32.08 Aligned_cols=95 Identities=14% Similarity=0.178 Sum_probs=52.7 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCC---CCCCCCCCCCCCCHH---HHHHHHHHHHHHHHCCH Q ss_conf 444331025665430245676544321140111022103434---444432321486435---77777631111210000 Q gi|255764490|r 180 DKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYA---MGTSVSRASAQTNFS---KRGVSFNIPGMQVDGMD 253 (364) Q Consensus 180 ~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~a---ist~~~~~~~~~~i~---~ra~~~gi~~~~vDG~D 253 (364) T Consensus 60 ~gv~~~t~GPG~tN---~~tgl~~A~~d~~Pvl~isG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~~~~v--~~ 134 (162) T cd07038 60 LGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARL--TD 134 (162) T ss_pred CEEEEECCCCCHHH---HHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHEEEEEEE--CC T ss_conf 65666557871888---99999999983898799968877556525763001126521699999998673288992--99 Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEE Q ss_conf 23368875421024554546558983 Q gi|255764490|r 254 IRAVKATMDKAVAYCRAHKGPIIIEM 279 (364) Q Consensus 254 ~~~v~~~~~~a~~~~r~~~gP~lie~ 279 (364) T Consensus 135 ~~~~~~~l~~A~~~A~~~~gPV~l~i 160 (162) T cd07038 135 PENAAEEIDRVLRTALRESRPVYIEI 160 (162) T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEC T ss_conf 99999999999999842898889963 |
Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many |
| >PRK07525 sulfoacetaldehyde acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.1 Score=31.21 Aligned_cols=12 Identities=8% Similarity=0.077 Sum_probs=4.8 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999984 Q gi|255764490|r 338 KIINNSVEFAQS 349 (364) Q Consensus 338 ~~v~~a~~~A~~ 349 (364) T Consensus 536 ~el~~al~~Al~ 547 (589) T PRK07525 536 EELGPALKRAID 547 (589) T ss_pred HHHHHHHHHHHH T ss_conf 999999999997 |
|
| >PRK09259 putative oxalyl-CoA decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.1 Score=31.11 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=12.4 Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCHHH Q ss_conf 025665430245676544321140111 Q gi|255764490|r 186 CFGDGAANQGQVYESFNIAALWNLNVI 212 (364) Q Consensus 186 ~~GDGa~~eG~f~Ealn~A~~~~lPvi 212 (364) T Consensus 222 i~G~G~~~~~a~~~l~~lae~l~iPV~ 248 (572) T PRK09259 222 ILGKGAAYAQADEQIREFVESTGIPFL 248 (572) T ss_pred EECCCCCHHHHHHHHHHHHHHHCCCEE T ss_conf 988781455489999999997399767 |
|
| >TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.1 Score=31.13 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=9.2 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCHH Q ss_conf 566543024567654432114011 Q gi|255764490|r 188 GDGAANQGQVYESFNIAALWNLNV 211 (364) Q Consensus 188 GDGa~~eG~f~Ealn~A~~~~lPv 211 (364) T Consensus 204 G~gv~~~~a~~~l~~Lae~lg~PV 227 (579) T TIGR03457 204 GGGVVMGDAVEECKALAERLGAPV 227 (579) T ss_pred CCCCCCCCHHHHHHHHHHHHCCCC T ss_conf 974244326999999999739770 |
Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur. |
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 364 | dehydrogenase, E1 component [Candidatus Liberibacter as | ||
| 3exe_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 3e-55 | |
| 2ozl_A | 365 | Human Pyruvate Dehydrogenase S264e Variant Length = | 5e-55 | |
| 3exf_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 6e-55 | |
| 3exh_C | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 6e-55 | |
| 3exi_A | 382 | Crystal Structure Of The Pyruvate Dehydrogenase (E1 | 2e-54 | |
| 1ni4_A | 365 | Human Pyruvate Dehydrogenase Length = 365 | 3e-52 | |
| 1x7y_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 4e-48 | |
| 1dtw_A | 400 | Human Branched-Chain Alpha-Keto Acid Dehydrogenase | 5e-48 | |
| 1x7w_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 5e-48 | |
| 1x80_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 6e-48 | |
| 1x7z_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 6e-48 | |
| 1x7x_A | 400 | Crystal Structure Of The Human Mitochondrial Branch | 6e-48 | |
| 2j9f_A | 400 | Human Branched-Chain Alpha-Ketoacid Dehydrogenase- | 7e-48 | |
| 1olu_A | 400 | Roles Of His291-Alpha And His146-Beta' In The Reduc | 9e-48 | |
| 2bff_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 1e-47 | |
| 1v16_A | 400 | Crosstalk Between Cofactor Binding And The Phosphor | 9e-47 | |
| 2bfb_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 1e-46 | |
| 1v11_A | 400 | Crosstalk Between Cofactor Binding And The Phosphor | 4e-46 | |
| 2bfc_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 6e-46 | |
| 2bfe_A | 399 | Reactivity Modulation Of Human Branched-Chain Alpha | 7e-46 | |
| 2bfd_A | 400 | Reactivity Modulation Of Human Branched-Chain Alpha | 3e-45 | |
| 1w88_A | 368 | The Crystal Structure Of Pyruvate Dehydrogenase E1( | 3e-43 | |
| 1w85_A | 368 | The Crystal Structure Of Pyruvate Dehydrogenase E1 | 3e-43 | |
| 3duf_A | 369 | Snapshots Of Catalysis In The E1 Subunit Of The Pyr | 3e-43 | |
| 3dva_A | 369 | Snapshots Of Catalysis In The E1 Subunit Of The Pyr | 3e-43 | |
| 1um9_A | 367 | Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From T | 1e-42 | |
| 2bp7_A | 410 | New Crystal Form Of The Pseudomonas Putida Branched | 1e-39 | |
| 1qs0_A | 407 | Crystal Structure Of Pseudomonas Putida 2-Oxoisoval | 8e-35 |
| >gi|215261326|pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats.
Identities = 173/343 (50%), Positives = 226/343 (65%), Gaps = 6/343 (1%)
Query: 23 AKRAATSSVDCVDIPFLEGFEVSE-FNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGF 81
A A C EG V+ +E L YR+M +RR E KA QLY ++ GF
Sbjct: 23 ANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGF 82
Query: 82 CHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKG 141
CHLC GQEA VG++ + D +ITAYR HG G+ +I+AELTGR+GG +KGKG
Sbjct: 83 CHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKG 142
Query: 142 GSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESF 201
GS M FYGG+GIVGAQV LG GIA A KY D++C+ +GDGAANQGQ++E++
Sbjct: 143 GS--MHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAY 200
Query: 202 NIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATM 261
N+AALW L I++ ENN+Y MGTSV RA+A T++ KRG IPG++VDGMDI V+
Sbjct: 201 NMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGD--FIPGLRVDGMDILCVREAT 258
Query: 262 DKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPA-NYRTREEINEMRSNHDPIEQVRKRLLH 320
A AYCR+ KGPI++E+ TYRY GHSMSDP +YRTREEI E+RS DPI ++ R+++
Sbjct: 259 RFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVN 318
Query: 321 NKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDIL 363
+ AS +LKEI++ VRK I ++ +FA +D EP EL I
Sbjct: 319 SNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIY 361
|
| >gi|149242791|pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant Length = 365 | Back alignment and structure |
Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats.
Identities = 172/343 (50%), Positives = 225/343 (65%), Gaps = 6/343 (1%)
Query: 23 AKRAATSSVDCVDIPFLEGFEVSE-FNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGF 81
A A C EG V+ +E L YR+M +RR E KA QLY ++ GF
Sbjct: 6 ANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGF 65
Query: 82 CHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKG 141
CHLC GQEA VG++ + D +ITAYR HG G+ +I+AELTGR+GG +KGKG
Sbjct: 66 CHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKG 125
Query: 142 GSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESF 201
GS M FYGG+GIVGAQV LG GIA A KY D++C+ +GDGAANQGQ++E++
Sbjct: 126 GS--MHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAY 183
Query: 202 NIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATM 261
N+AALW L I++ ENN+Y MGTSV RA+A T++ KRG IPG++VDGMDI V+
Sbjct: 184 NMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGD--FIPGLRVDGMDILCVREAT 241
Query: 262 DKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPA-NYRTREEINEMRSNHDPIEQVRKRLLH 320
A AYCR+ KGPI++E+ TYRY GH MSDP +YRTREEI E+RS DPI ++ R+++
Sbjct: 242 RFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVN 301
Query: 321 NKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDIL 363
+ AS +LKEI++ VRK I ++ +FA +D EP EL I
Sbjct: 302 SNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIY 344
|
| >gi|215261334|pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats.
Identities = 172/343 (50%), Positives = 225/343 (65%), Gaps = 6/343 (1%)
Query: 23 AKRAATSSVDCVDIPFLEGFEVSE-FNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGF 81
A A C EG V+ +E L YR+M +RR E KA QLY ++ GF
Sbjct: 23 ANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGF 82
Query: 82 CHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKG 141
CHLC GQEA VG++ + D +ITAYR HG G+ +I+AELTGR+GG +KGKG
Sbjct: 83 CHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKG 142
Query: 142 GSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESF 201
GS M FYGG+GIVGAQV LG GIA A KY D++C+ +GDGAANQGQ++E++
Sbjct: 143 GS--MHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAY 200
Query: 202 NIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATM 261
N+AALW L I++ ENN+Y MGT+V RA+A T++ KRG IPG++VDGMDI V+
Sbjct: 201 NMAALWKLPCIFICENNRYGMGTAVERAAASTDYYKRGD--FIPGLRVDGMDILCVREAT 258
Query: 262 DKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPA-NYRTREEINEMRSNHDPIEQVRKRLLH 320
A AYCR+ KGPI++E+ TYRY GHSMSDP YRTREEI E+RS DPI ++ R+++
Sbjct: 259 RFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVAYRTREEIQEVRSKSDPIMLLKDRMVN 318
Query: 321 NKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDIL 363
+ AS +LKEI++ VRK I ++ +FA +D EP EL I
Sbjct: 319 SNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIY 361
|
| >gi|215261376|pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 | Back alignment and structure |
Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats.
Identities = 171/343 (49%), Positives = 224/343 (65%), Gaps = 6/343 (1%)
Query: 23 AKRAATSSVDCVDIPFLEGFEVSE-FNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGF 81
A A C EG V+ +E L YR+M +RR E KA QLY ++ GF
Sbjct: 23 ANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGF 82
Query: 82 CHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKG 141
CHLC GQEA VG++ + D +ITAYR HG G+ +I+AELTGR+GG +KGKG
Sbjct: 83 CHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKG 142
Query: 142 GSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESF 201
GS M FYGG+GIVGAQV LG GIA A KY D++C+ +GDGAANQGQ++E++
Sbjct: 143 GS--MHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAY 200
Query: 202 NIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATM 261
N+AALW L I++ ENN+Y MGT+V RA+A T++ KRG IPG++VDGMDI V+
Sbjct: 201 NMAALWKLPCIFICENNRYGMGTAVERAAASTDYYKRGD--FIPGLRVDGMDILCVREAT 258
Query: 262 DKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPA-NYRTREEINEMRSNHDPIEQVRKRLLH 320
A AYCR+ KGPI++E+ TYRY GH MSDP YRTREEI E+RS DPI ++ R+++
Sbjct: 259 RFAAAYCRSGKGPILMELQTYRYHGHXMSDPGVAYRTREEIQEVRSKSDPIMLLKDRMVN 318
Query: 321 NKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDIL 363
+ AS +LKEI++ VRK I ++ +FA +D EP EL I
Sbjct: 319 SNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIY 361
|
| >gi|215261382|pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex With The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot Be Modeled Into The Electron Density Length = 382 | Back alignment and structure |
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 172/343 (50%), Positives = 226/343 (65%), Gaps = 6/343 (1%)
Query: 23 AKRAATSSVDCVDIPFLEGFEVSE-FNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGF 81
A A C EG V+ +E L YR+M +RR E KA QLY ++ GF
Sbjct: 23 ANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGF 82
Query: 82 CHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKG 141
CHLC GQEA VG++ + D +ITA+R HG G+ +I+AELTGR+GG +KGKG
Sbjct: 83 CHLCDGQEACCVGLEAGINPTDHLITAFRAHGFTFTRGLSVREILAELTGRKGGCAKGKG 142
Query: 142 GSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESF 201
GS M FYGG+GIVGAQV LG GIA A KY D++C+ +GDGAANQGQ++E++
Sbjct: 143 GS--MHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAY 200
Query: 202 NIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATM 261
N+AALW L I++ ENN+Y MGTSV RA+A T++ KRG IPG++VDGMDI V+
Sbjct: 201 NMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGD--FIPGLRVDGMDILCVREAT 258
Query: 262 DKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPA-NYRTREEINEMRSNHDPIEQVRKRLLH 320
A AYCR+ KGPI++E+ TYRY GHSMSDP +YRTREEI E+RS DPI ++ R+++
Sbjct: 259 RFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVN 318
Query: 321 NKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDIL 363
+ AS +LKEI++ VRK I ++ +FA +D EP EL I
Sbjct: 319 SNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIY 361
|
| >gi|33357459|pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase Length = 365 | Back alignment and structure |
Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats.
Identities = 168/343 (48%), Positives = 217/343 (63%), Gaps = 6/343 (1%)
Query: 23 AKRAATSSVDCVDIPFLEGFEVSE-FNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGF 81
A A C EG V+ +E L YR +RR E KA QLY ++ GF
Sbjct: 6 ANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRXXQTVRRXELKADQLYKQKIIRGF 65
Query: 82 CHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKG 141
CHLC GQEA VG++ + D +ITAYR HG G+ +I+AELTGR+GG +KGKG
Sbjct: 66 CHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKG 125
Query: 142 GSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESF 201
GS FYGG+GIVGAQV LG GIA A KY D++C+ +GDGAANQGQ++E++
Sbjct: 126 GS--XHXYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAY 183
Query: 202 NIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATM 261
N AALW L I++ ENN+Y GTSV RA+A T++ KRG IPG++VDG DI V+
Sbjct: 184 NXAALWKLPCIFICENNRYGXGTSVERAAASTDYYKRGD--FIPGLRVDGXDILCVREAT 241
Query: 262 DKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPA-NYRTREEINEMRSNHDPIEQVRKRLLH 320
A AYCR+ KGPI+ E+ TYRY GHS SDP +YRTREEI E+RS DPI ++ R ++
Sbjct: 242 RFAAAYCRSGKGPILXELQTYRYHGHSXSDPGVSYRTREEIQEVRSKSDPIXLLKDRXVN 301
Query: 321 NKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDIL 363
+ AS +LKEI++ VRK I ++ +FA +D EP EL I
Sbjct: 302 SNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIY 344
|
| >gi|56967004|pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha-Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats.
Identities = 89/344 (25%), Positives = 147/344 (42%), Gaps = 7/344 (2%)
Query: 21 VSAKRAATSSVDCVDIPFLEGFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGG 80
+ R ++ E KE+ L Y+ M L+ + + G +
Sbjct: 31 IPIYRVMDRQGQIINPS-----EDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI-S 84
Query: 81 FCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGK 140
F G+E VG +L D + YRE G ++ MA+ G + KG+
Sbjct: 85 FYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGR 144
Query: 141 GGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYES 200
+H + F + Q+ G A+A K ++++ + FG+GAA++G +
Sbjct: 145 QMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAG 204
Query: 201 FNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKAT 260
FN AA +I+ NN YA+ T S + RG + I ++VDG D+ AV
Sbjct: 205 FNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNA 264
Query: 261 MDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPAN-YRTREEINEMRSNHDPIEQVRKRLL 319
+A A P +IE +TYR H+ SD ++ YR+ +E+N PI ++R LL
Sbjct: 265 TKEARRRAVAENQPFLIEAMTYRIGHHNTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLL 324
Query: 320 HNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDIL 363
W E K R+ + + E A+ +P+P L+SD+
Sbjct: 325 SQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
|
| >gi|7546384|pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase Length = 400 | Back alignment and structure |
Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats.
Identities = 90/344 (26%), Positives = 147/344 (42%), Gaps = 7/344 (2%)
Query: 21 VSAKRAATSSVDCVDIPFLEGFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGG 80
+ R ++ E KE+ L Y+ M L+ + + G +
Sbjct: 31 IPIYRVMDRQGQIINPS-----EDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI-S 84
Query: 81 FCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGK 140
F G+E VG +L D + YRE G ++ MA+ G + KG+
Sbjct: 85 FYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGR 144
Query: 141 GGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYES 200
+H + F + Q+ G A+A K ++++ + FG+GAA++G +
Sbjct: 145 QMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAG 204
Query: 201 FNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKAT 260
FN AA +I+ NN YA+ T S + RG + I ++VDG D+ AV
Sbjct: 205 FNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNA 264
Query: 261 MDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPAN-YRTREEINEMRSNHDPIEQVRKRLL 319
+A A P +IE +TYR HS SD ++ YR+ +E+N PI ++R LL
Sbjct: 265 TKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLL 324
Query: 320 HNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDIL 363
W E K R+ + + E A+ +P+P L+SD+
Sbjct: 325 SQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
|
| >gi|56967000|pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha-Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats.
Identities = 89/344 (25%), Positives = 146/344 (42%), Gaps = 7/344 (2%)
Query: 21 VSAKRAATSSVDCVDIPFLEGFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGG 80
+ R ++ E KE+ L Y+ M L+ + + G +
Sbjct: 31 IPIYRVMDRQGQIINPS-----EDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI-S 84
Query: 81 FCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGK 140
F G+E VG +L D + YRE G ++ MA+ G + KG+
Sbjct: 85 FYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGR 144
Query: 141 GGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYES 200
+H + F + Q+ G A+A K ++++ + FG+GAA++G +
Sbjct: 145 QMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAG 204
Query: 201 FNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKAT 260
FN AA +I+ NN YA+ T S + RG + I ++VDG D+ AV
Sbjct: 205 FNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNA 264
Query: 261 MDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPAN-YRTREEINEMRSNHDPIEQVRKRLL 319
+A A P +IE +TYR H SD ++ YR+ +E+N PI ++R LL
Sbjct: 265 TKEARRRAVAENQPFLIEAMTYRIGHHQTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLL 324
Query: 320 HNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDIL 363
W E K R+ + + E A+ +P+P L+SD+
Sbjct: 325 SQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
|
| >gi|56967008|pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha-Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats.
Identities = 89/344 (25%), Positives = 146/344 (42%), Gaps = 7/344 (2%)
Query: 21 VSAKRAATSSVDCVDIPFLEGFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGG 80
+ R ++ E KE+ L Y+ M L+ + + G +
Sbjct: 31 IPIYRVMDRQGQIINPS-----EDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI-S 84
Query: 81 FCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGK 140
F G+E VG +L D + YRE G ++ MA+ G + KG+
Sbjct: 85 FYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGR 144
Query: 141 GGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYES 200
+H + F + Q+ G A+A K ++++ + FG+GAA++G +
Sbjct: 145 QMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAG 204
Query: 201 FNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKAT 260
FN AA +I+ NN YA+ T S + RG + I ++VDG D+ AV
Sbjct: 205 FNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNA 264
Query: 261 MDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPAN-YRTREEINEMRSNHDPIEQVRKRLL 319
+A A P +IE +TYR H SD ++ YR+ +E+N PI ++R LL
Sbjct: 265 TKEARRRAVAENQPFLIEAMTYRIGHHXTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLL 324
Query: 320 HNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDIL 363
W E K R+ + + E A+ +P+P L+SD+
Sbjct: 325 SQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
|
| >gi|56967006|pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha-Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats.
Identities = 89/344 (25%), Positives = 146/344 (42%), Gaps = 7/344 (2%)
Query: 21 VSAKRAATSSVDCVDIPFLEGFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGG 80
+ R ++ E KE+ L Y+ M L+ + + G +
Sbjct: 31 IPIYRVMDRQGQIINPS-----EDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI-S 84
Query: 81 FCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGK 140
F G+E VG +L D + YRE G ++ MA+ G + KG+
Sbjct: 85 FYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGR 144
Query: 141 GGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYES 200
+H + F + Q+ G A+A K ++++ + FG+GAA++G +
Sbjct: 145 QMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAG 204
Query: 201 FNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKAT 260
FN AA +I+ NN YA+ T S + RG + I ++VDG D+ AV
Sbjct: 205 FNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNA 264
Query: 261 MDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPAN-YRTREEINEMRSNHDPIEQVRKRLL 319
+A A P +IE +TYR H SD ++ YR+ +E+N PI ++R LL
Sbjct: 265 TKEARRRAVAENQPFLIEAMTYRIGHHDTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLL 324
Query: 320 HNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDIL 363
W E K R+ + + E A+ +P+P L+SD+
Sbjct: 325 SQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
|
| >gi|56967002|pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha-Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats.
Identities = 89/344 (25%), Positives = 146/344 (42%), Gaps = 7/344 (2%)
Query: 21 VSAKRAATSSVDCVDIPFLEGFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGG 80
+ R ++ E KE+ L Y+ M L+ + + G +
Sbjct: 31 IPIYRVMDRQGQIINPS-----EDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI-S 84
Query: 81 FCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGK 140
F G+E VG +L D + YRE G ++ MA+ G + KG+
Sbjct: 85 FYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGR 144
Query: 141 GGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYES 200
+H + F + Q+ G A+A K ++++ + FG+GAA++G +
Sbjct: 145 QMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAG 204
Query: 201 FNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKAT 260
FN AA +I+ NN YA+ T S + RG + I ++VDG D+ AV
Sbjct: 205 FNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNA 264
Query: 261 MDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPAN-YRTREEINEMRSNHDPIEQVRKRLL 319
+A A P +IE +TYR H SD ++ YR+ +E+N PI ++R LL
Sbjct: 265 TKEARRRAVAENQPFLIEAMTYRIGHHETSDDSSAYRSVDEVNYWDKQDHPISRLRHYLL 324
Query: 320 HNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDIL 363
W E K R+ + + E A+ +P+P L+SD+
Sbjct: 325 SQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
|
| >gi|134104669|pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase- Decarboxylase E1b Length = 400 | Back alignment and structure |
Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats.
Identities = 90/344 (26%), Positives = 146/344 (42%), Gaps = 7/344 (2%)
Query: 21 VSAKRAATSSVDCVDIPFLEGFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGG 80
+ R ++ E KE+ L Y+ M L+ + + G +
Sbjct: 31 IPIYRVMDRQGQIINPS-----EDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI-S 84
Query: 81 FCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGK 140
F G+E VG +L D + YRE G ++ MA+ G + KG+
Sbjct: 85 FYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGR 144
Query: 141 GGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYES 200
+H + F + Q+ G A+A K ++++ + FG+GAA++G +
Sbjct: 145 QMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAG 204
Query: 201 FNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKAT 260
FN AA +I+ NN YA+ T S + RG + I ++VDG D+ AV
Sbjct: 205 FNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNA 264
Query: 261 MDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPAN-YRTREEINEMRSNHDPIEQVRKRLL 319
+A A P +IE +TYR HS SD ++ YR +E+N PI ++R LL
Sbjct: 265 TKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRPVDEVNYWDKQDHPISRLRHYLL 324
Query: 320 HNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDIL 363
W E K R+ + + E A+ +P+P L+SD+
Sbjct: 325 SQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
|
| >gi|34810149|pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive Acylation Reaction Catalyzed By Human Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 | Back alignment and structure |
Score = 195 bits (495), Expect = 9e-48, Method: Composition-based stats.
Identities = 89/344 (25%), Positives = 146/344 (42%), Gaps = 7/344 (2%)
Query: 21 VSAKRAATSSVDCVDIPFLEGFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGG 80
+ R ++ E KE+ L Y+ M L+ + + G +
Sbjct: 31 IPIYRVMDRQGQIINPS-----EDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI-S 84
Query: 81 FCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGK 140
F G+E VG +L D + YRE G ++ MA+ G + KG+
Sbjct: 85 FYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGR 144
Query: 141 GGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYES 200
+H + F + Q+ G A+A K ++++ + FG+GAA++G +
Sbjct: 145 QMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAG 204
Query: 201 FNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKAT 260
FN AA +I+ NN YA+ T S + RG + I ++VDG D+ AV
Sbjct: 205 FNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNA 264
Query: 261 MDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPAN-YRTREEINEMRSNHDPIEQVRKRLL 319
+A A P +IE +TYR S SD ++ YR+ +E+N PI ++R LL
Sbjct: 265 TKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLL 324
Query: 320 HNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDIL 363
W E K R+ + + E A+ +P+P L+SD+
Sbjct: 325 SQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
|
| >gi|90108861|pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 89/344 (25%), Positives = 146/344 (42%), Gaps = 7/344 (2%)
Query: 21 VSAKRAATSSVDCVDIPFLEGFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGG 80
+ R ++ E KE+ L Y+ M L+ + + G +
Sbjct: 31 IPIYRVMDRQGQIINPS-----EDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI-S 84
Query: 81 FCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGK 140
F G+E VG +L D + YRE G ++ MA+ G + KG+
Sbjct: 85 FYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGR 144
Query: 141 GGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYES 200
+H + F + Q+ G A+A K ++++ + FG+GAA++G +
Sbjct: 145 QMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAG 204
Query: 201 FNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKAT 260
FN AA +I+ NN YA+ T S + RG + I ++VDG D+ AV
Sbjct: 205 FNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNA 264
Query: 261 MDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPAN-YRTREEINEMRSNHDPIEQVRKRLL 319
+A A P +IE +TYR HS SD ++ YR+ +E+ PI ++R LL
Sbjct: 265 TKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVGYWDKQDHPISRLRHYLL 324
Query: 320 HNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDIL 363
W E K R+ + + E A+ +P+P L+SD+
Sbjct: 325 SQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
|
| >gi|49259447|pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 | Back alignment and structure |
Score = 192 bits (486), Expect = 9e-47, Method: Composition-based stats.
Identities = 88/344 (25%), Positives = 146/344 (42%), Gaps = 7/344 (2%)
Query: 21 VSAKRAATSSVDCVDIPFLEGFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGG 80
+ R ++ E KE+ L Y+ M L+ + + G +
Sbjct: 31 IPIYRVMDRQGQIINPS-----EDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI-S 84
Query: 81 FCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGK 140
F G+E VG +L D + YRE G ++ MA+ G + KG+
Sbjct: 85 FYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGR 144
Query: 141 GGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYES 200
+H + F + Q+ G A+A K ++++ + FG+GAA++G +
Sbjct: 145 QMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAG 204
Query: 201 FNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKAT 260
FN AA +I+ NN YA+ T S + RG + I ++VDG D+ AV
Sbjct: 205 FNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNA 264
Query: 261 MDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPAN-YRTREEINEMRSNHDPIEQVRKRLL 319
+A A P +IE +TYR S SD ++ +R+ +E+N PI ++R LL
Sbjct: 265 TKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLL 324
Query: 320 HNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDIL 363
W E K R+ + + E A+ +P+P L+SD+
Sbjct: 325 SQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
|
| >gi|90108853|pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 89/344 (25%), Positives = 147/344 (42%), Gaps = 7/344 (2%)
Query: 21 VSAKRAATSSVDCVDIPFLEGFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGG 80
+ R ++ E KE+ L Y+ M L+ + + G +
Sbjct: 31 IPIYRVMDRQGQIINPS-----EDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI-S 84
Query: 81 FCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGK 140
F G+E VG +L D + AYRE G ++ MA+ G + KG+
Sbjct: 85 FYMTNYGEEGTHVGSAAALDNTDLVFGAYREAGVLMYRDYPLELFMAQCYGNISDLGKGR 144
Query: 141 GGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYES 200
+H + F + Q+ G A+A K ++++ + FG+GAA++G +
Sbjct: 145 QMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAG 204
Query: 201 FNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKAT 260
FN AA +I+ NN YA+ T S + RG + I ++VDG D+ AV
Sbjct: 205 FNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNA 264
Query: 261 MDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPAN-YRTREEINEMRSNHDPIEQVRKRLL 319
+A A P +IE +TYR S SD ++ +R+ +E+N PI ++R LL
Sbjct: 265 TKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLL 324
Query: 320 HNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDIL 363
W E K R+ + + E A+ +P+P L+SD+
Sbjct: 325 SQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
|
| >gi|49259445|pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 | Back alignment and structure |
Score = 190 bits (481), Expect = 4e-46, Method: Composition-based stats.
Identities = 88/344 (25%), Positives = 145/344 (42%), Gaps = 7/344 (2%)
Query: 21 VSAKRAATSSVDCVDIPFLEGFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGG 80
+ R ++ E KE+ L Y+ M L+ + + G +
Sbjct: 31 IPIYRVMDRQGQIINPS-----EDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI-S 84
Query: 81 FCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGK 140
F G+E VG +L D + YRE G ++ MA+ G + KG+
Sbjct: 85 FYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGR 144
Query: 141 GGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYES 200
+H + F + Q+ G A+A K ++++ + FG+GAA++G +
Sbjct: 145 QMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAG 204
Query: 201 FNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKAT 260
FN AA +I+ NN YA+ T S + RG + I ++VDG D+ AV
Sbjct: 205 FNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNA 264
Query: 261 MDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPAN-YRTREEINEMRSNHDPIEQVRKRLL 319
+A A P +IE +TY S SD ++ YR+ +E+N PI ++R LL
Sbjct: 265 TKEARRRAVAENQPFLIEAMTYAIGHASTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLL 324
Query: 320 HNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDIL 363
W E K R+ + + E A+ +P+P L+SD+
Sbjct: 325 SQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
|
| >gi|90108855|pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
Score = 189 bits (479), Expect = 6e-46, Method: Composition-based stats.
Identities = 87/344 (25%), Positives = 146/344 (42%), Gaps = 7/344 (2%)
Query: 21 VSAKRAATSSVDCVDIPFLEGFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGG 80
+ R ++ E KE+ L Y+ M L+ + + G +
Sbjct: 31 IPIYRVMDRQGQIINPS-----EDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI-S 84
Query: 81 FCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGK 140
F G+E VG +L D + +RE G ++ MA+ G + KG+
Sbjct: 85 FYMTNYGEEGTHVGSAAALDNTDLVFGQFREAGVLMYRDYPLELFMAQCYGNISDLGKGR 144
Query: 141 GGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYES 200
+H + F + Q+ G A+A K ++++ + FG+GAA++G +
Sbjct: 145 QMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAG 204
Query: 201 FNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKAT 260
FN AA +I+ NN YA+ T S + RG + I ++VDG D+ AV
Sbjct: 205 FNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNA 264
Query: 261 MDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPAN-YRTREEINEMRSNHDPIEQVRKRLL 319
+A A P +IE +TYR S SD ++ +R+ +E+N PI ++R LL
Sbjct: 265 TKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLL 324
Query: 320 HNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDIL 363
W E K R+ + + E A+ +P+P L+SD+
Sbjct: 325 SQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
|
| >gi|157881366|pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 399 | Back alignment and structure |
Score = 189 bits (479), Expect = 7e-46, Method: Composition-based stats.
Identities = 86/343 (25%), Positives = 144/343 (41%), Gaps = 6/343 (1%)
Query: 21 VSAKRAATSSVDCVDIPFLEGFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGG 80
+ R ++ E KE+ L Y+ M L+ + + G +
Sbjct: 31 IPIYRVMDRQGQIINPS-----EDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI-S 84
Query: 81 FCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGK 140
F G+E VG +L D + A RE G ++ MA+ G + KG+
Sbjct: 85 FYMTNYGEEGTHVGSAAALDNTDLVFGAAREAGVLMYRDYPLELFMAQCYGNISDLGKGR 144
Query: 141 GGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYES 200
+H + F + Q+ G A+A K ++++ + FG+GAA++G +
Sbjct: 145 QMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAG 204
Query: 201 FNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKAT 260
FN AA +I+ NN YA+ T S + RG + I ++VDG D+ AV
Sbjct: 205 FNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNA 264
Query: 261 MDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREEINEMRSNHDPIEQVRKRLLH 320
+A A P +IE +TYR + D + +R+ +E+N PI ++R LL
Sbjct: 265 TKEARRRAVAENQPFLIEAMTYRIGHSTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLS 324
Query: 321 NKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDIL 363
W E K R+ + + E A+ +P+P L+SD+
Sbjct: 325 QGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 367
|
| >gi|90108857|pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 | Back alignment and structure |
Score = 187 bits (473), Expect = 3e-45, Method: Composition-based stats.
Identities = 87/344 (25%), Positives = 145/344 (42%), Gaps = 7/344 (2%)
Query: 21 VSAKRAATSSVDCVDIPFLEGFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGG 80
+ R ++ E KE+ L Y+ M L+ + + G +
Sbjct: 31 IPIYRVMDRQGQIINPS-----EDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRI-S 84
Query: 81 FCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGK 140
F G+E VG +L D + RE G ++ MA+ G + KG+
Sbjct: 85 FYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGR 144
Query: 141 GGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYES 200
+H + F + Q+ G A+A K ++++ + FG+GAA++G +
Sbjct: 145 QMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAG 204
Query: 201 FNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKAT 260
FN AA +I+ NN YA+ T S + RG + I ++VDG D+ AV
Sbjct: 205 FNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNA 264
Query: 261 MDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPAN-YRTREEINEMRSNHDPIEQVRKRLL 319
+A A P +IE +TYR S SD ++ +R+ +E+N PI ++R LL
Sbjct: 265 TKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLL 324
Query: 320 HNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDIL 363
W E K R+ + + E A+ +P+P L+SD+
Sbjct: 325 SQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY 368
|
| >gi|56966713|pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n, E183q) Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368 | Back alignment and structure |
Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats.
Identities = 87/317 (27%), Positives = 146/317 (46%), Gaps = 13/317 (4%)
Query: 44 VSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGD 103
+ E + EQ R M+ R ++++ L G + GF GQEA + +L + D
Sbjct: 38 MPELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKED 96
Query: 104 QMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQ 163
++ YR+ I+ G+ + G G +G ++ I+GAQ
Sbjct: 97 FILPGYRDVPQIIWHGLPLYQAFLFSRGHFHGNQIPEGVNV---------LPPQIIIGAQ 147
Query: 164 VSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMG 223
G+A K R + + GDG +QG Y+ N A + I+V++NN++A+
Sbjct: 148 YIQAAGVALGLKMRGKKAVAITYTGDGGTSQGNFYQGINFAGAFKAPAIFVVQNNRFAIS 207
Query: 224 TSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283
T V + + +++ V+ IPG+QVDGMD AV A + A +GP +IE L +R
Sbjct: 208 TPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFR 267
Query: 284 YRGHSMS--DPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIIN 341
Y H+MS DP YR++E NE + DP+ + RK L SE + + ++ I
Sbjct: 268 YGPHTMSGDDPTRYRSKELENEW-AKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIK 326
Query: 342 NSVEFAQSDKEPDPAEL 358
+++ A + +L
Sbjct: 327 EAIKKADETPKQKVTDL 343
|
| >gi|56966700|pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368 | Back alignment and structure |
Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats.
Identities = 88/317 (27%), Positives = 146/317 (46%), Gaps = 13/317 (4%)
Query: 44 VSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGD 103
+ E + EQ R M+ R ++++ L G + GF GQEA + +L + D
Sbjct: 38 MPELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKED 96
Query: 104 QMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQ 163
++ YR+ I+ G+ + G G +G ++ I+GAQ
Sbjct: 97 FILPGYRDVPQIIWHGLPLYQAFLFSRGHFHGNQIPEGVNV---------LPPQIIIGAQ 147
Query: 164 VSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMG 223
G+A K R + + GDG +QG YE N A + I+V++NN++A+
Sbjct: 148 YIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAIS 207
Query: 224 TSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283
T V + + +++ V+ IPG+QVDGMD AV A + A +GP +IE L +R
Sbjct: 208 TPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFR 267
Query: 284 YRGHSMS--DPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIIN 341
Y H+MS DP YR++E NE + DP+ + RK L SE + + ++ I
Sbjct: 268 YGPHTMSGDDPTRYRSKELENEW-AKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIK 326
Query: 342 NSVEFAQSDKEPDPAEL 358
+++ A + +L
Sbjct: 327 EAIKKADETPKQKVTDL 343
|
| gi|219689224|pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369 | Back alignment and structure |
Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats.
Identities = 88/317 (27%), Positives = 146/317 (46%), Gaps = 13/317 (4%)
Query: 44 VSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGD 103
+ E + EQ R M+ R ++++ L G + GF GQEA + +L + D
Sbjct: 39 MPELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKED 97
Query: 104 QMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQ 163
++ YR+ I+ G+ + G G +G ++ I+GAQ
Sbjct: 98 FILPGYRDVPQIIWHGLPLYQAFLFSRGHFHGNQIPEGVNV---------LPPQIIIGAQ 148
Query: 164 VSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMG 223
G+A K R + + GDG +QG YE N A + I+V++NN++A+
Sbjct: 149 YIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAIS 208
Query: 224 TSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283
T V + + +++ V+ IPG+QVDGMD AV A + A +GP +IE L +R
Sbjct: 209 TPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFR 268
Query: 284 YRGHSMS--DPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIIN 341
Y H+MS DP YR++E NE + DP+ + RK L SE + + ++ I
Sbjct: 269 YGPHTMSGDDPTRYRSKELENEW-AKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIK 327
Query: 342 NSVEFAQSDKEPDPAEL 358
+++ A + +L
Sbjct: 328 EAIKKADETPKQKVTDL 344
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