HHsearch alignment for GI: 255764490 and conserved domain: PRK05444
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.
Probab=99.86 E-value=2.7e-21 Score=156.63 Aligned_cols=219 Identities=21% Similarity=0.283 Sum_probs=143.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCEEEEC--CCCHHHHHHH
Q ss_conf 76343888999999999899999999999999789877722058987899999996238-99899943--0068999997
Q gi|255764490|r 42 FEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLT-EGDQMITA--YREHGHILAC 118 (364)
Q Consensus 42 ~~~~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al~-~~D~~~~~--yR~~~~~l~~ 118 (364)
T Consensus 14 ~dlk~l~~~~l~~la~~---iR~~~i~~v--~~~~---GH~g~~lg~~e~~~aL~~~f~~~rDr~v~s~GH~~Y~hk~Lt 85 (576)
T PRK05444 14 ADLRKLSLEELPQLADE---IREFLIDSV--SKTG---GHLGSNLGVVELTVALHYVFDTPKDRIIWDVGHQAYPHKILT 85 (576)
T ss_pred HHHHCCCHHHHHHHHHH---HHHHHHHHH--HHCC---CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHC
T ss_conf 99860999999999999---999999999--7658---988857479999999985269998848982750755668862
Q ss_pred HHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 421-22223432101234434556773211122-1236766746676743254310011233444433102566543024
Q gi|255764490|r 119 GVD-ASKIMAELTGRQGGISKGKGGSMHMFSTK-NGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQ 196 (364)
Q Consensus 119 G~~-~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~-~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~ 196 (364)
T Consensus 86 G~~~~~~~~r~~~~l-~g---------~~~~~es~~d~~~~G~~g~gls~a~G~A~a~~l~~~~~~v~~~~GDG~l~eGi 155 (576)
T PRK05444 86 GRRDRFDTLRQKGGL-SG---------FPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGEDRKVVAVIGDGALTGGM 155 (576)
T ss_pred CCHHHHHHHHHCCCC-CC---------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHCCHH
T ss_conf 758776314514998-89---------99998788987787876217889999999998469995499998140103314
Q ss_pred HHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCE
Q ss_conf 567654432114011102210343444443232148643577777631111-2100002336887542102455454655
Q gi|255764490|r 197 VYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPI 275 (364)
Q Consensus 197 f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~ 275 (364)
T Consensus 156 s~EA~s~Ag~~~~~liii~~DN~isI~~~vg~~~~----~~~Fea~Gw~~i~~iDGhd~~~i~~al~~ak~----~~~P~ 227 (576)
T PRK05444 156 AFEALNNAGDLKSDLIVILNDNEMSISPNVGALSN----YTLFEELGFKYIGPIDGHDLDALVETLKNAKD----LKGPV 227 (576)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC----CHHHHHCCCEEECCCCCCCHHHHHHHHHHHHH----CCCCE
T ss_conf 89999755533887699997798200788654331----01789809948686589899999999998886----69998
Q ss_pred EEEECCCCCCC
Q ss_conf 89831566887
Q gi|255764490|r 276 IIEMLTYRYRG 286 (364)
Q Consensus 276 lie~~tyR~~g 286 (364)
T Consensus 228 lI~~kT~~G~G 238 (576)
T PRK05444 228 LLHVVTKKGKG 238 (576)
T ss_pred EEEEEEECCCC
T ss_conf 99999705667