HHsearch alignment for GI: 255764490 and conserved domain: TIGR03186
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=97.97 E-value=4.3e-06 Score=59.20 Aligned_cols=119 Identities=22% Similarity=0.260 Sum_probs=78.7
Q ss_pred CCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH-HHHHHHCCCCCCCCCCCCCCC-CCCHH
Q ss_conf 3254310011233-------44443310256654302456765443211401-110221034344444323214-86435
Q gi|255764490|r 166 LGTGIAFANKYRR-------SDKICVVCFGDGAANQGQVYESFNIAALWNLN-VIYVIENNQYAMGTSVSRASA-QTNFS 236 (364)
Q Consensus 166 ~A~G~A~a~k~~~-------~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lP-vifvvenN~~aist~~~~~~~-~~~i~ 236 (364)
T Consensus 197 ~aIYQArf~kYL~~Rgl~~~~~~kVWaflGDGEmDEPEs~gai~lA~rE~LDNLifVvNCNLQRLDGPVrGNgkIiqELE 276 (889)
T TIGR03186 197 NAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELE 276 (889)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf 89999999999986699876788289993587668713333321566605777699995676546888468528889988
Q ss_pred HHHH-----------------------------------------------------HH----------------HHHHH
Q ss_conf 7777-----------------------------------------------------76----------------31111
Q gi|255764490|r 237 KRGV-----------------------------------------------------SF----------------NIPGM 247 (364)
Q Consensus 237 ~ra~-----------------------------------------------------~~----------------gi~~~ 247 (364)
T Consensus 277 ~~FrGAGWnVIKviWG~~WD~Ll~~D~~G~L~~rm~e~vDG~yQ~~~a~~Gay~Re~fFg~~pel~~lv~~~sD~~i~~L 356 (889)
T TIGR03186 277 SQFAGAGWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRL 356 (889)
T ss_pred HHHCCCCCCEEEEEECCCHHHHHHHCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 77355885269986678578998528856799998854472878763467899999980899899999850899999860
Q ss_pred HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 2100002336887542102455454655898315668876
Q gi|255764490|r 248 QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGH 287 (364)
Q Consensus 248 ~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gH 287 (364)
T Consensus 357 ~RGGHDp~KvyAAy~~A~~h---kG~PTVILakTvKGyGl 393 (889)
T TIGR03186 357 RRGGHDARKLYAAYDRAVRH---EGRPTVILAKTMKGFGM 393 (889)
T ss_pred HCCCCCHHHHHHHHHHHHHC---CCCCEEEEEECEEECCC
T ss_conf 15799829999999999857---89985998423243564