HHsearch alignment for GI: 255764490 and conserved domain: TIGR03336
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=97.06 E-value=0.0012 Score=43.40 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=74.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHCCCHHHHHHHCCCC-CCCCCCC---------
Q ss_conf 4667674325431001123344443310256654-3024567654432114011102210343-4444432---------
Q gi|255764490|r 159 IVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAA-NQGQVYESFNIAALWNLNVIYVIENNQY-AMGTSVS--------- 227 (364)
Q Consensus 159 ~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~-~eG~f~Ealn~A~~~~lPvifvvenN~~-aist~~~--------- 227 (364)
T Consensus 404 ~MG~~~~~~~G~~~~----~~~~~v~a~iGDgTffHSG~--~al~~AV~~~~nit~~ILdN~~tAMTGgQ~~pg~~~~~~ 477 (595)
T TIGR03336 404 CMGASIGVASGLSKA----GEKQRIVAFIGDSTFFHTGI--PGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGM 477 (595)
T ss_pred CCCCCHHHHEEECCC----CCCCCEEEEECCCCCHHCCH--HHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 046555653130325----79873799913661010565--999999976998699998688504348999998665446
Q ss_pred -CCCCCCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf -32148643577777631111-2100002336887542102455454655898315
Q gi|255764490|r 228 -RASAQTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364)
Q Consensus 228 -~~~~~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364)
T Consensus 478 g~~~~~i~i~~~~r~~Gv~~v~~v~~~~~~~~~~~~~e~~~~----~GvsViI~~q 529 (595)
T TIGR03336 478 GEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALAA----EGVSVIIAKQ 529 (595)
T ss_pred CCCCCEEEHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHC----CCCEEEEECC
T ss_conf 886432238998876699843687877989999999998618----9978999729