HHsearch alignment for GI: 255764490 and conserved domain: cd02009
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.01 E-value=1.3e-10 Score=88.12 Aligned_cols=110 Identities=23% Similarity=0.313 Sum_probs=75.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC---------CCCC
Q ss_conf 4667674325431001123344443310256654302456765443211401110221034-34444---------4323
Q gi|255764490|r 159 IVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT---------SVSR 228 (364)
Q Consensus 159 ~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist---------~~~~ 228 (364)
T Consensus 52 GIdg~lstAiGaa~a~-----~~pvv~i~GDgsf~~d-~-~eL~t~~~~~~pv~ivV~NN~GggIf~~l~~~~~~~~~~~ 124 (175)
T cd02009 52 GIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHD-L-NGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEFER 124 (175)
T ss_pred CCCCHHHHHHHHHHCC-----CCCEEEEEECHHHHCC-H-HHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCE
T ss_conf 5220899999999658-----9988999702686616-7-8999998669982999994898339999877503686431
Q ss_pred CCC---CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf 214---86435777776311112100002336887542102455454655898315
Q gi|255764490|r 229 ASA---QTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364)
Q Consensus 229 ~~~---~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364)
T Consensus 125 ~~~tp~~~df~~lA~a~G~~~~~v~--~~~el~~al~~~~~----~~gp~lIEV~t 174 (175)
T cd02009 125 LFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALA----QDGPHVIEVKT 174 (175)
T ss_pred EECCCCCCCHHHHHHHCCCCEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEC
T ss_conf 2157776689999998699779849--99999999999983----89989999968