HHsearch alignment for GI: 255764490 and conserved domain: cd02009

>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.01  E-value=1.3e-10  Score=88.12  Aligned_cols=110  Identities=23%  Similarity=0.313  Sum_probs=75.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC---------CCCC
Q ss_conf             4667674325431001123344443310256654302456765443211401110221034-34444---------4323
Q gi|255764490|r  159 IVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT---------SVSR  228 (364)
Q Consensus       159 ~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist---------~~~~  228 (364)
T Consensus        52 GIdg~lstAiGaa~a~-----~~pvv~i~GDgsf~~d-~-~eL~t~~~~~~pv~ivV~NN~GggIf~~l~~~~~~~~~~~  124 (175)
T cd02009          52 GIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHD-L-NGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEFER  124 (175)
T ss_pred             CCCCHHHHHHHHHHCC-----CCCEEEEEECHHHHCC-H-HHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCE
T ss_conf             5220899999999658-----9988999702686616-7-8999998669982999994898339999877503686431


Q ss_pred             CCC---CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf             214---86435777776311112100002336887542102455454655898315
Q gi|255764490|r  229 ASA---QTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT  281 (364)
Q Consensus       229 ~~~---~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t  281 (364)
T Consensus       125 ~~~tp~~~df~~lA~a~G~~~~~v~--~~~el~~al~~~~~----~~gp~lIEV~t  174 (175)
T cd02009         125 LFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALA----QDGPHVIEVKT  174 (175)
T ss_pred             EECCCCCCCHHHHHHHCCCCEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEC
T ss_conf             2157776689999998699779849--99999999999983----89989999968