HHsearch alignment for GI: 255764490 and conserved domain: cd02018
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=98.37 E-value=4.8e-07 Score=65.27 Aligned_cols=152 Identities=14% Similarity=0.149 Sum_probs=100.1
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCC-CCCHHHHHHH
Q ss_conf 101234434556773211122123676674667674325431001123-------34444331025665-4302456765
Q gi|255764490|r 130 TGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYR-------RSDKICVVCFGDGA-ANQGQVYESF 201 (364)
Q Consensus 130 ~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~-------~~~~v~v~~~GDGa-~~eG~f~Eal 201 (364)
T Consensus 32 iv~~iGCs~~~~~~~~~~--~~~~~~ih~~hgra~a~AtGik~a~~~~~~~~~~~~~~~~Vv~~~GDGd~~~IG~--~~l 107 (237)
T cd02018 32 IANSTGCSSVYASTAPFN--SWAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIGF--GAL 107 (237)
T ss_pred EEECCCCCCCCCCCCCCC--CCCCCEEHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHCCH--HHH
T ss_conf 996876686426646566--6477522001233188899999999873111101257886899955735765007--889
Q ss_pred HHHHHCCCHHHHHHHCCC-CCC-------CCCC---------CCCCCCCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHH
Q ss_conf 443211401110221034-344-------4443---------232148643577777631111-2100002336887542
Q gi|255764490|r 202 NIAALWNLNVIYVIENNQ-YAM-------GTSV---------SRASAQTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDK 263 (364)
Q Consensus 202 n~A~~~~lPvifvvenN~-~ai-------st~~---------~~~~~~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~ 263 (364)
T Consensus 108 ~ha~~Rn~~i~~I~~dN~~Yg~TggQ~SptTp~G~~T~ttp~G~~~~~~~~~~ia~~~g~~yVAr~s~~~~~~~~k~~~~ 187 (237)
T cd02018 108 SHSLFRGEDITVIVLDNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKE 187 (237)
T ss_pred HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHH
T ss_conf 99998289839999888134467884798998987130168997678879999998659958999855999999999999
Q ss_pred HCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 1024554546558983156688766
Q gi|255764490|r 264 AVAYCRAHKGPIIIEMLTYRYRGHS 288 (364)
Q Consensus 264 a~~~~r~~~gP~lie~~tyR~~gHs 288 (364)
T Consensus 188 A~~~---~~G~s~v~vlspCpt~w~ 209 (237)
T cd02018 188 AISR---TDGPTFIHAYTPCITEWG 209 (237)
T ss_pred HHHC---CCCCEEEEEECCCCCCCC
T ss_conf 9865---999889999748988989