HHsearch alignment for GI: 255764490 and conserved domain: cd03377

>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=95.95  E-value=0.06  Score=32.62  Aligned_cols=159  Identities=17%  Similarity=0.238  Sum_probs=86.3

Q ss_pred             CCCCCCCCCCCCC-CCHHHHHHHH--HHHHCCCHHHHHHHCCC-CC-------CCCCC---------CCCCCCCCHHHHH
Q ss_conf             4443310256654-3024567654--43211401110221034-34-------44443---------2321486435777
Q gi|255764490|r  180 DKICVVCFGDGAA-NQGQVYESFN--IAALWNLNVIYVIENNQ-YA-------MGTSV---------SRASAQTNFSKRG  239 (364)
Q Consensus       180 ~~v~v~~~GDGa~-~eG~f~Ealn--~A~~~~lPvifvvenN~-~a-------ist~~---------~~~~~~~~i~~ra  239 (364)
T Consensus       151 kkSvWivGGDGWAYDIG~--gGLdHVLAs--G~nVNvLVlDtE~YsNTGgQ~SkaTp~ga~akfa~~Gk~~~KKDl~~ia  226 (365)
T cd03377         151 KKSVWIIGGDGWAYDIGY--GGLDHVLAS--GENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIA  226 (365)
T ss_pred             CCCEEEECCCCHHHHCCC--CHHHHHHHC--CCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHH
T ss_conf             553588746612320363--115677745--8972899965865557775335688640443104357654413299999


Q ss_pred             HHHHHHHH-HH-HCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC-CC------------CC----CCCCHHH
Q ss_conf             77631111-21-0000233688754210245545465589831566887666-78------------76----6789999
Q gi|255764490|r  240 VSFNIPGM-QV-DGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSM-SD------------PA----NYRTREE  300 (364)
Q Consensus       240 ~~~gi~~~-~v-DG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~-~D------------~~----~YR~~~E  300 (364)
T Consensus       227 m~~g~vYVA~va~ga~~~q~lka~~eA~~~----~GPs~i~aysPC~-~hg~~~~~~~~~~~~k~AV~sGyWpLyrynP~  301 (365)
T cd03377         227 MSYGNVYVAQIALGANDNQTLKAFREAEAY----DGPSLIIAYSPCI-AHGIKGGMTKSQEQQKLAVESGYWPLYRYNPR  301 (365)
T ss_pred             HHCCCCEEEEEECCCCHHHHHHHHHHHHCC----CCCEEEEEECCCC-CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             976996699961689999999999998678----9986998877874-13778775568999999998597057624715


Q ss_pred             HHHHHHHCCH--------HHHHHHHHHHCCCC------CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9998983893--------79999999987899------9899999999999999999999984
Q gi|255764490|r  301 INEMRSNHDP--------IEQVRKRLLHNKWA------SEGDLKEIEMNVRKIINNSVEFAQS  349 (364)
Q Consensus       301 i~~~~~~~DP--------I~~~~~~L~~~g~~------te~e~~~i~~~~~~~v~~a~~~A~~  349 (364)
T Consensus       302 l~~--~gk~pf~LDsk~p~~~~~~fl~~e~Rf~~L~k~~Pe~A~~L~~~~~~~v~~r~~~~~~  362 (365)
T cd03377         302 LVE--EGKNPLQLDSKEPDGPVEEFLNNENRFAALKKANPERAEQLFEQLQADAKERYKRYKR  362 (365)
T ss_pred             HHH--CCCCCCEECCCCCCCCHHHHHHHCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             665--7999833068899966999986246799984518399999999999999999999999