HHsearch alignment for GI: 255764490 and conserved domain: cd06586
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=94.47 E-value=0.018 Score=35.92 Aligned_cols=103 Identities=20% Similarity=0.251 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 32543100112334444331025665430245676544321140111022103434444432321486435777776311
Q gi|255764490|r 166 LGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIP 245 (364)
Q Consensus 166 ~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~ 245 (364)
T Consensus 50 mAdgyar~~----g~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~d~~~~~~~--~t 118 (154)
T cd06586 50 AAAGYARAG----GPPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGISAQAKQTFQ--SMFDLGMYRS--IP 118 (154)
T ss_pred HHHHHHHHH----CCCEEEECCCCHHHH---HHHHHHHHHHCCCCEEEEECCCCHHHCCCCCCC--CHHHHHHHHH--HH
T ss_conf 999999974----994899637957998---999999998756988999668887662789883--1139999999--98
Q ss_pred HHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf 1121000023368875421024554546558983
Q gi|255764490|r 246 GMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEM 279 (364)
Q Consensus 246 ~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~ 279 (364)
T Consensus 119 k~~~~v~~~~~~~~~l~~A~~~a~~~pGPv~l~i 152 (154)
T cd06586 119 EANISSPSPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred HEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 6489949999999999999999854998789862