HHsearch alignment for GI: 255764490 and conserved domain: cd07035

>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=90.87  E-value=0.078  Score=31.91  Aligned_cols=110  Identities=12%  Similarity=0.104  Sum_probs=60.7

Q ss_pred             CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             67432543100112334-44433102566543024567654432114011102210343444443232148643577777
Q gi|255764490|r  163 QVSLGTGIAFANKYRRS-DKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVS  241 (364)
Q Consensus       163 ~~p~A~G~A~a~k~~~~-~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~  241 (364)
T Consensus        42 ~E~~A~~~A~g~~~~tg~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q~~d~~~~~~~  116 (155)
T cd07035          42 HEQGAVGMADGYARATGKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRPTAGEGRGA--FQEIDQVALFRP  116 (155)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH---HHHHHHHHHHCCCCEEEEECCCCHHHHCCCC--CCCCCHHHHCCC
T ss_conf             77999999999998659975999827768887---8899999998389808994688867727556--545364765277


Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHCCCCCCC-CCCEEEEE
Q ss_conf             631111210000233688754210245545-46558983
Q gi|255764490|r  242 FNIPGMQVDGMDIRAVKATMDKAVAYCRAH-KGPIIIEM  279 (364)
Q Consensus       242 ~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~-~gP~lie~  279 (364)
T Consensus       117 ~~k~~~~i~--~~~~~~~~i~~A~~~a~s~~~gPv~l~i  153 (155)
T cd07035         117 ITKWAYRVT--SPEEIPEALRRAFRIALSGRPGPVALDL  153 (155)
T ss_pred             CCCEEEECC--CHHHHHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf             663257889--9999999999999997459894589980