HHsearch alignment for GI: 255764490 and conserved domain: cd07035
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=90.87 E-value=0.078 Score=31.91 Aligned_cols=110 Identities=12% Similarity=0.104 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 67432543100112334-44433102566543024567654432114011102210343444443232148643577777
Q gi|255764490|r 163 QVSLGTGIAFANKYRRS-DKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVS 241 (364)
Q Consensus 163 ~~p~A~G~A~a~k~~~~-~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~ 241 (364)
T Consensus 42 ~E~~A~~~A~g~~~~tg~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q~~d~~~~~~~ 116 (155)
T cd07035 42 HEQGAVGMADGYARATGKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRPTAGEGRGA--FQEIDQVALFRP 116 (155)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH---HHHHHHHHHHCCCCEEEEECCCCHHHHCCCC--CCCCCHHHHCCC
T ss_conf 77999999999998659975999827768887---8899999998389808994688867727556--545364765277
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHCCCCCCC-CCCEEEEE
Q ss_conf 631111210000233688754210245545-46558983
Q gi|255764490|r 242 FNIPGMQVDGMDIRAVKATMDKAVAYCRAH-KGPIIIEM 279 (364)
Q Consensus 242 ~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~-~gP~lie~ 279 (364)
T Consensus 117 ~~k~~~~i~--~~~~~~~~i~~A~~~a~s~~~gPv~l~i 153 (155)
T cd07035 117 ITKWAYRVT--SPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred CCCEEEECC--CHHHHHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf 663257889--9999999999999997459894589980