HHsearch alignment for GI: 255764490 and conserved domain: cd07039

>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=93.95  E-value=0.041  Score=33.70  Aligned_cols=103  Identities=12%  Similarity=0.061  Sum_probs=60.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             25431001123344443310256654302456765443211401110221034344444323214864357777763111
Q gi|255764490|r  167 GTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPG  246 (364)
Q Consensus       167 A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~  246 (364)
T Consensus        54 A~gyar~---tg~~gv~~~t~GpG~tN---~~~gl~~A~~~~~Pll~i~g~~~~~~~~~~~~Q--~~d~~~~~~~~tK~~  125 (164)
T cd07039          54 ASAEAKL---TGKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQVPTDELGTDYFQ--EVDLLALFKDVAVYN  125 (164)
T ss_pred             HHHHHHH---HCCCEEEEEECCCHHHH---HHHHHHHHHHCCCCEEEEECCCCHHHCCCCCCC--CCCHHHHHHHHHCEE
T ss_conf             9999999---79987999842823888---999999999858977999667755434899874--274999989974578


Q ss_pred             HHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf             121000023368875421024554546558983
Q gi|255764490|r  247 MQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEM  279 (364)
Q Consensus       247 ~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~  279 (364)
T Consensus       126 ~~v--~~~~~~~~~~~~A~~~A~~~~GPV~l~i  156 (164)
T cd07039         126 ETV--TSPEQLPELLDRAIRTAIAKRGVAVLIL  156 (164)
T ss_pred             EEC--CCHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf             885--9999999999999998540899999992