Query gi|255764490|ref|YP_003065085.2| dehydrogenase, E1 component [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 364
No_of_seqs 193 out of 3729
Neff 6.3
Searched_HMMs 39220
Date Sun May 29 23:46:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764490.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00149 odpA pyruvate dehydro 100.0 0 0 752.5 25.0 321 43-364 15-342 (343)
2 COG1071 AcoA Pyruvate/2-oxoglu 100.0 0 0 756.0 20.9 320 44-364 21-343 (358)
3 TIGR03182 PDH_E1_alph_y pyruva 100.0 0 0 751.1 24.3 314 49-363 1-314 (315)
4 TIGR03181 PDH_E1_alph_x pyruva 100.0 0 0 714.1 24.0 313 41-364 15-328 (341)
5 KOG0225 consensus 100.0 0 0 698.1 19.2 353 8-364 11-370 (394)
6 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 0 0 675.7 20.3 292 55-347 1-293 (293)
7 pfam00676 E1_dh Dehydrogenase 100.0 0 0 672.2 21.0 300 56-356 1-303 (303)
8 KOG1182 consensus 100.0 0 0 557.0 12.0 319 44-363 80-400 (432)
9 PRK09404 kgd alpha-ketoglutara 100.0 3.1E-32 7.9E-37 226.8 17.5 306 45-356 189-524 (931)
10 PRK12270 kgd alpha-ketoglutara 100.0 4.3E-30 1.1E-34 213.0 19.5 302 45-351 493-827 (1234)
11 COG0567 SucA 2-oxoglutarate de 99.9 1.5E-24 3.9E-29 177.4 17.5 304 43-351 168-500 (906)
12 cd02012 TPP_TK Thiamine pyroph 99.9 9.3E-26 2.4E-30 185.3 5.5 147 151-300 98-248 (255)
13 KOG0451 consensus 99.9 2.6E-24 6.6E-29 176.0 12.3 301 42-354 149-497 (913)
14 KOG0450 consensus 99.9 1.6E-22 4.1E-27 164.5 17.2 306 41-351 240-576 (1017)
15 cd02016 TPP_E1_OGDC_like Thiam 99.9 2.4E-23 6E-28 169.8 8.6 213 85-297 17-261 (265)
16 PRK05899 transketolase; Review 99.9 2.7E-21 7E-26 156.6 14.7 194 103-307 62-280 (661)
17 COG3959 Transketolase, N-termi 99.9 3.6E-21 9.3E-26 155.8 11.8 217 54-283 9-242 (243)
18 PRK05444 1-deoxy-D-xylulose-5- 99.9 2.7E-21 6.9E-26 156.6 10.9 219 42-286 14-238 (576)
19 PRK12315 1-deoxy-D-xylulose-5- 99.9 4.1E-21 1E-25 155.5 9.5 227 42-289 10-250 (581)
20 cd02007 TPP_DXS Thiamine pyrop 99.8 3.1E-22 7.9E-27 162.7 2.0 124 153-286 70-194 (195)
21 pfam00456 Transketolase_N Tran 99.8 2.2E-20 5.6E-25 150.8 10.2 154 150-307 104-274 (333)
22 PRK12753 transketolase; Review 99.8 5.9E-19 1.5E-23 141.7 15.8 232 61-307 9-275 (662)
23 PRK12754 transketolase; Review 99.8 1.1E-18 2.9E-23 139.8 15.3 195 103-307 58-276 (663)
24 TIGR00232 tktlase_bact transke 99.8 1.3E-19 3.4E-24 145.8 10.2 218 119-349 75-328 (675)
25 COG0021 TktA Transketolase [Ca 99.8 1.1E-19 2.7E-24 146.4 9.3 230 60-306 11-277 (663)
26 PTZ00089 transketolase; Provis 99.8 1.6E-19 4.1E-24 145.3 9.2 231 60-308 11-279 (670)
27 KOG0523 consensus 99.8 5.9E-18 1.5E-22 135.3 9.4 213 58-287 13-246 (632)
28 COG1154 Dxs Deoxyxylulose-5-ph 99.6 1.6E-15 4E-20 119.7 10.1 231 43-295 13-294 (627)
29 PRK12571 1-deoxy-D-xylulose-5- 99.6 3.3E-16 8.4E-21 124.0 5.0 226 42-289 16-290 (642)
30 cd02017 TPP_E1_EcPDC_like Thia 99.5 1.6E-12 4.2E-17 100.3 13.3 197 102-306 60-348 (386)
31 PRK07979 acetolactate synthase 99.4 2.6E-13 6.7E-18 105.4 2.8 119 156-283 419-549 (574)
32 cd02006 TPP_Gcl Thiamine pyrop 99.4 1.2E-13 2.9E-18 107.7 0.7 122 155-284 54-196 (202)
33 cd00568 TPP_enzymes Thiamine p 99.4 5.5E-13 1.4E-17 103.4 4.1 116 154-281 42-168 (168)
34 PRK06725 acetolactate synthase 99.3 4.5E-13 1.1E-17 103.9 3.2 117 156-284 420-547 (570)
35 PRK07525 sulfoacetaldehyde ace 99.3 3.9E-13 1E-17 104.3 2.7 120 156-283 433-564 (589)
36 PRK08327 acetolactate synthase 99.3 6E-13 1.5E-17 103.2 3.4 121 155-283 427-567 (568)
37 PRK07064 hypothetical protein; 99.3 6.2E-13 1.6E-17 103.0 2.9 128 147-286 394-532 (544)
38 PRK06154 hypothetical protein; 99.3 6.4E-13 1.6E-17 103.0 2.7 120 156-284 420-548 (556)
39 PRK09107 acetolactate synthase 99.3 7.1E-13 1.8E-17 102.7 2.8 115 157-283 428-554 (594)
40 PRK06546 pyruvate dehydrogenas 99.3 1.1E-12 2.9E-17 101.4 3.2 123 156-293 406-538 (578)
41 PRK08611 pyruvate oxidase; Pro 99.3 8.5E-13 2.2E-17 102.2 2.3 114 157-282 407-530 (576)
42 PRK12474 hypothetical protein; 99.3 1.5E-12 3.8E-17 100.6 3.3 115 154-280 385-517 (518)
43 PRK11269 glyoxylate carboligas 99.3 1.2E-12 3.1E-17 101.1 2.8 129 156-292 417-566 (591)
44 TIGR00239 2oxo_dh_E1 2-oxoglut 99.3 1.6E-11 4.2E-16 93.9 8.5 303 43-350 194-544 (990)
45 PRK07524 hypothetical protein; 99.3 1.7E-12 4.2E-17 100.3 3.3 118 157-286 406-533 (534)
46 PRK07418 acetolactate synthase 99.3 1.2E-12 3.1E-17 101.1 2.3 114 158-283 434-560 (615)
47 PRK09124 pyruvate dehydrogenas 99.3 1.3E-12 3.4E-17 100.9 2.5 115 157-283 407-531 (574)
48 PRK06456 acetolactate synthase 99.3 1.8E-12 4.6E-17 100.1 3.2 115 157-283 420-546 (572)
49 PRK07710 acetolactate synthase 99.3 2.2E-12 5.7E-17 99.5 3.5 116 156-283 422-549 (571)
50 PRK08617 acetolactate synthase 99.3 2.1E-12 5.3E-17 99.7 3.4 115 157-283 413-537 (552)
51 cd02013 TPP_Xsc_like Thiamine 99.3 1.2E-12 3.1E-17 101.2 2.1 119 156-283 51-180 (196)
52 PRK05858 hypothetical protein; 99.3 1.5E-12 3.8E-17 100.6 2.5 114 157-282 407-531 (543)
53 CHL00099 ilvB acetohydroxyacid 99.3 1.9E-12 5E-17 99.9 3.0 114 157-282 425-551 (588)
54 PRK06048 acetolactate synthase 99.3 2.1E-12 5.3E-17 99.7 3.0 116 156-283 412-539 (562)
55 PRK08322 acetolactate synthase 99.3 2.3E-12 5.8E-17 99.4 3.0 116 156-283 404-529 (547)
56 cd02010 TPP_ALS Thiamine pyrop 99.3 5.2E-12 1.3E-16 97.1 4.8 117 155-283 45-171 (177)
57 PRK06112 acetolactate synthase 99.3 2.7E-12 6.9E-17 99.0 3.3 115 157-283 439-564 (581)
58 PRK08155 acetolactate synthase 99.3 3.5E-12 9E-17 98.2 3.7 117 155-283 416-544 (564)
59 PRK08266 hypothetical protein; 99.3 2.9E-12 7.4E-17 98.8 3.2 118 155-284 396-524 (531)
60 PRK08978 acetolactate synthase 99.2 2E-12 5E-17 99.8 2.0 116 156-283 399-526 (548)
61 PRK07092 benzoylformate decarb 99.2 3.5E-12 8.9E-17 98.2 3.2 117 153-281 393-520 (521)
62 PRK06457 pyruvate dehydrogenas 99.2 4.9E-12 1.3E-16 97.3 3.8 115 156-283 396-520 (549)
63 TIGR03457 sulphoacet_xsc sulfo 99.2 1.8E-12 4.7E-17 100.0 1.6 119 156-283 428-558 (579)
64 PRK07449 2-succinyl-6-hydroxy- 99.2 3.3E-12 8.5E-17 98.4 2.8 115 155-283 404-530 (548)
65 PRK07586 hypothetical protein; 99.2 5.4E-12 1.4E-16 97.0 3.5 112 157-280 384-513 (514)
66 PRK08979 acetolactate synthase 99.2 4.4E-12 1.1E-16 97.6 2.9 117 156-283 419-547 (572)
67 PRK06466 acetolactate synthase 99.2 4.7E-12 1.2E-16 97.4 2.9 117 156-283 421-549 (574)
68 pfam02775 TPP_enzyme_C Thiamin 99.2 3.3E-12 8.3E-17 98.4 2.0 113 155-279 25-150 (150)
69 PRK08199 acetolactate synthase 99.2 6.5E-12 1.6E-16 96.5 3.1 117 156-284 407-534 (553)
70 PRK07282 acetolactate synthase 99.2 9E-12 2.3E-16 95.6 3.5 116 156-284 416-543 (566)
71 cd02003 TPP_IolD Thiamine pyro 99.2 2.3E-11 6E-16 92.9 5.3 117 156-284 46-186 (205)
72 PRK07789 acetolactate synthase 99.2 8.2E-12 2.1E-16 95.8 2.9 116 157-283 446-577 (612)
73 PRK08273 pyruvate decarboxylas 99.2 8.5E-12 2.2E-16 95.8 2.9 116 155-282 412-546 (597)
74 cd02002 TPP_BFDC Thiamine pyro 99.2 4.9E-12 1.2E-16 97.3 1.6 113 157-281 48-178 (178)
75 PRK08527 acetolactate synthase 99.2 1.4E-11 3.6E-16 94.4 3.6 117 156-284 413-541 (560)
76 PRK06882 acetolactate synthase 99.2 1E-11 2.6E-16 95.2 2.9 118 155-283 418-547 (574)
77 PRK06276 acetolactate synthase 99.2 1.4E-11 3.6E-16 94.3 3.3 116 156-283 417-544 (586)
78 cd02015 TPP_AHAS Thiamine pyro 99.2 1E-11 2.5E-16 95.3 2.4 116 156-283 48-175 (186)
79 cd02014 TPP_POX Thiamine pyrop 99.2 8.3E-12 2.1E-16 95.8 1.9 117 155-283 48-174 (178)
80 PRK09259 putative oxalyl-CoA d 99.2 3.3E-11 8.5E-16 92.0 4.8 118 156-286 425-553 (572)
81 cd02004 TPP_BZL_OCoD_HPCL Thia 99.2 1.4E-11 3.5E-16 94.4 2.4 115 155-281 45-171 (172)
82 TIGR03393 indolpyr_decarb indo 99.1 2.2E-11 5.5E-16 93.1 2.9 116 156-283 402-528 (539)
83 PRK06965 acetolactate synthase 99.1 3.5E-11 9E-16 91.8 3.9 116 157-283 436-563 (587)
84 COG0028 IlvB Thiamine pyrophos 99.1 1.5E-11 3.9E-16 94.1 1.6 118 155-284 405-533 (550)
85 cd03371 TPP_PpyrDC Thiamine py 99.1 6.3E-11 1.6E-15 90.2 4.7 158 88-283 2-164 (188)
86 TIGR03254 oxalate_oxc oxalyl-C 99.1 8.9E-11 2.3E-15 89.2 4.0 116 155-283 414-539 (554)
87 cd02005 TPP_PDC_IPDC Thiamine 99.1 5.5E-11 1.4E-15 90.6 2.8 116 157-283 49-175 (183)
88 TIGR03394 indol_phenyl_DC indo 99.1 7.5E-11 1.9E-15 89.7 2.7 114 157-283 402-522 (535)
89 PRK11864 2-ketoisovalerate fer 99.0 2.3E-10 6E-15 86.5 4.4 208 130-348 43-297 (300)
90 TIGR00118 acolac_lg acetolacta 99.0 2.8E-10 7.2E-15 86.0 4.5 184 64-281 366-570 (593)
91 cd02009 TPP_SHCHC_synthase Thi 99.0 1.3E-10 3.4E-15 88.1 2.3 110 159-281 52-174 (175)
92 cd02001 TPP_ComE_PpyrDC Thiami 99.0 1.6E-10 4E-15 87.7 2.3 118 149-282 34-155 (157)
93 PRK11865 pyruvate ferredoxin o 99.0 4.1E-09 1E-13 78.6 9.5 152 129-288 40-215 (298)
94 cd02008 TPP_IOR_alpha Thiamine 98.9 1.1E-09 2.7E-14 82.3 4.3 114 158-281 51-176 (178)
95 cd03376 TPP_PFOR_porB_like Thi 98.7 2.5E-08 6.3E-13 73.6 6.1 154 129-290 29-208 (235)
96 cd03375 TPP_OGFOR Thiamine pyr 98.7 1.3E-08 3.2E-13 75.4 3.5 121 152-282 45-184 (193)
97 cd03372 TPP_ComE Thiamine pyro 98.7 9.5E-09 2.4E-13 76.2 2.4 115 150-283 35-156 (179)
98 pfam09364 XFP_N XFP N-terminal 98.7 2E-07 5.2E-12 67.7 8.9 178 80-268 48-251 (379)
99 PRK06163 hypothetical protein; 98.6 1.8E-08 4.6E-13 74.4 2.2 119 148-281 48-172 (202)
100 PRK05261 putative phosphoketol 98.6 7.1E-08 1.8E-12 70.6 5.1 175 83-268 54-254 (786)
101 cd02011 TPP_PK Thiamine pyroph 98.6 2.1E-08 5.2E-13 74.1 2.2 122 137-268 41-173 (227)
102 TIGR02720 pyruv_oxi_spxB pyruv 98.5 1.2E-07 3.1E-12 69.1 4.7 147 157-309 403-564 (577)
103 PRK09628 oorB 2-oxoglutarate-a 98.5 5.4E-07 1.4E-11 64.9 8.0 208 70-316 6-234 (281)
104 TIGR00204 dxs 1-deoxy-D-xylulo 98.5 1.1E-06 2.8E-11 63.0 9.5 198 80-290 38-288 (627)
105 TIGR02418 acolac_catab acetola 98.5 7.1E-08 1.8E-12 70.6 2.0 119 151-279 409-541 (553)
106 PRK05778 2-oxoglutarate ferred 98.4 2.3E-07 5.8E-12 67.4 4.4 180 74-290 13-213 (306)
107 COG2609 AceE Pyruvate dehydrog 98.4 5E-06 1.3E-10 58.8 10.9 123 178-306 219-422 (887)
108 cd02018 TPP_PFOR Thiamine pyro 98.4 4.8E-07 1.2E-11 65.3 4.7 152 130-288 32-209 (237)
109 COG1013 PorB Pyruvate:ferredox 98.3 1.9E-06 4.9E-11 61.4 7.0 154 153-319 65-239 (294)
110 PRK11866 2-oxoacid ferredoxin 98.3 1.6E-06 4.1E-11 61.9 5.4 172 73-281 9-199 (286)
111 PRK09405 aceE pyruvate dehydro 98.2 7.8E-07 2E-11 63.9 3.4 147 157-306 191-422 (886)
112 KOG1185 consensus 98.2 1.3E-06 3.2E-11 62.6 3.9 112 164-282 432-560 (571)
113 PRK11867 2-oxoglutarate ferred 98.2 1.3E-06 3.3E-11 62.5 3.2 166 79-281 16-200 (280)
114 TIGR03297 Ppyr-DeCO2ase phosph 98.1 8.1E-06 2.1E-10 57.4 5.9 117 151-282 215-336 (361)
115 COG3961 Pyruvate decarboxylase 98.0 2.5E-06 6.3E-11 60.8 2.6 122 155-284 408-537 (557)
116 TIGR03186 AKGDH_not_PDH alpha- 98.0 4.3E-06 1.1E-10 59.2 2.7 119 166-287 197-393 (889)
117 TIGR00759 aceE 2-oxo-acid dehy 97.9 9E-06 2.3E-10 57.1 3.8 154 167-331 203-437 (905)
118 COG3960 Glyoxylate carboligase 97.9 8.4E-06 2.1E-10 57.3 3.0 162 122-291 375-565 (592)
119 PRK11869 2-oxoacid ferredoxin 97.9 1.4E-05 3.6E-10 55.9 3.7 170 75-281 7-196 (284)
120 PRK13012 2-oxoacid dehydrogena 97.8 1.1E-05 2.8E-10 56.6 2.8 138 166-306 211-433 (898)
121 COG3957 Phosphoketolase [Carbo 97.7 7.6E-06 1.9E-10 57.6 0.0 118 141-264 136-260 (793)
122 TIGR01504 glyox_carbo_lig glyo 97.5 6.1E-05 1.6E-09 51.8 2.2 162 122-291 374-566 (593)
123 COG4231 Indolepyruvate ferredo 97.4 0.00016 4.1E-09 49.1 4.1 112 159-281 429-553 (640)
124 TIGR02177 PorB_KorB 2-oxoacid: 97.4 0.00041 1E-08 46.5 5.7 118 152-280 47-184 (302)
125 KOG1184 consensus 97.4 0.00014 3.6E-09 49.5 3.2 119 156-282 413-539 (561)
126 KOG4166 consensus 97.4 0.00011 2.7E-09 50.2 2.4 120 155-288 521-652 (675)
127 TIGR03336 IOR_alpha indolepyru 97.1 0.0012 3.2E-08 43.4 5.3 113 159-281 404-529 (595)
128 COG3962 Acetolactate synthase 96.8 0.0015 3.8E-08 42.9 3.9 106 171-284 453-577 (617)
129 COG1165 MenD 2-succinyl-6-hydr 96.5 0.0015 3.7E-08 43.0 2.3 153 88-284 375-548 (566)
130 cd03377 TPP_PFOR_PNO Thiamine 95.9 0.06 1.5E-06 32.6 8.0 159 180-349 151-362 (365)
131 cd06586 TPP_enzyme_PYR Pyrimid 94.5 0.018 4.7E-07 35.9 1.6 103 166-279 50-152 (154)
132 cd07039 TPP_PYR_POX Pyrimidine 93.9 0.041 1E-06 33.7 2.5 103 167-279 54-156 (164)
133 cd07038 TPP_PYR_PDC_IPDC_like 92.1 0.073 1.9E-06 32.1 1.6 95 180-279 60-160 (162)
134 PRK07525 sulfoacetaldehyde ace 91.5 0.1 2.5E-06 31.2 1.7 12 338-349 536-547 (589)
135 PRK08366 vorA 2-ketoisovalerat 91.3 0.11 2.7E-06 31.1 1.6 164 86-289 11-177 (394)
136 PRK09259 putative oxalyl-CoA d 90.9 0.1 2.6E-06 31.1 1.3 27 186-212 222-248 (572)
137 TIGR03457 sulphoacet_xsc sulfo 90.9 0.1 2.6E-06 31.1 1.3 24 188-211 204-227 (579)
138 cd07035 TPP_PYR_POX_like Pyrim 90.9 0.078 2E-06 31.9 0.6 110 163-279 42-153 (155)
139 TIGR00118 acolac_lg acetolacta 90.4 0.33 8.3E-06 27.9 3.5 97 167-279 58-161 (593)
140 PRK08659 2-oxoglutarate ferred 90.0 0.23 5.8E-06 28.9 2.4 113 165-290 62-178 (377)
141 PRK07064 hypothetical protein; 89.8 0.15 3.9E-06 30.0 1.4 20 335-354 502-521 (544)
142 TIGR03254 oxalate_oxc oxalyl-C 89.7 0.1 2.7E-06 31.1 0.5 18 336-353 513-530 (554)
143 PRK07282 acetolactate synthase 89.4 0.21 5.3E-06 29.2 1.8 31 183-213 213-243 (566)
144 TIGR03297 Ppyr-DeCO2ase phosph 89.4 0.13 3.3E-06 30.5 0.8 113 161-280 36-151 (361)
145 COG0028 IlvB Thiamine pyrophos 89.3 0.23 5.8E-06 28.9 2.0 82 137-219 147-239 (550)
146 PRK08327 acetolactate synthase 88.7 0.28 7.1E-06 28.4 2.1 26 187-212 227-252 (568)
147 PRK08322 acetolactate synthase 88.4 0.21 5.4E-06 29.1 1.3 30 183-212 199-228 (547)
148 PRK06456 acetolactate synthase 88.4 0.24 6E-06 28.8 1.5 16 338-353 522-537 (572)
149 PRK09627 oorA 2-oxoglutarate-a 88.3 0.37 9.5E-06 27.5 2.5 115 164-289 60-176 (375)
150 PRK06276 acetolactate synthase 88.1 0.24 6.2E-06 28.7 1.5 19 335-353 517-535 (586)
151 PRK07524 hypothetical protein; 88.0 0.18 4.5E-06 29.6 0.7 20 335-354 503-522 (534)
152 PRK06882 acetolactate synthase 87.8 0.29 7.4E-06 28.2 1.7 13 337-349 521-533 (574)
153 PRK08611 pyruvate oxidase; Pro 87.7 0.19 4.9E-06 29.4 0.7 20 335-354 504-523 (576)
154 PRK07710 acetolactate synthase 87.1 0.34 8.8E-06 27.8 1.7 17 337-353 524-540 (571)
155 PRK06725 acetolactate synthase 86.9 0.29 7.5E-06 28.2 1.3 29 184-212 218-246 (570)
156 PRK06048 acetolactate synthase 86.5 0.31 7.9E-06 28.0 1.3 18 337-354 514-531 (562)
157 PRK12474 hypothetical protein; 86.5 0.38 9.7E-06 27.5 1.7 20 336-355 494-513 (518)
158 PRK11269 glyoxylate carboligas 85.8 0.51 1.3E-05 26.6 2.1 30 183-212 206-235 (591)
159 PRK08367 porA pyruvate ferredo 85.6 0.69 1.8E-05 25.8 2.6 162 86-289 8-176 (395)
160 PRK07789 acetolactate synthase 85.4 0.45 1.1E-05 27.0 1.6 35 178-213 230-264 (612)
161 pfam02779 Transket_pyr Transke 85.2 0.61 1.6E-05 26.1 2.2 104 165-279 62-167 (174)
162 cd07037 TPP_PYR_MenD Pyrimidin 85.2 0.52 1.3E-05 26.6 1.9 94 178-279 59-160 (162)
163 PRK06466 acetolactate synthase 84.6 0.36 9.1E-06 27.7 0.8 12 338-349 524-535 (574)
164 PRK08199 acetolactate synthase 84.4 0.46 1.2E-05 27.0 1.3 20 335-354 506-525 (553)
165 PRK08978 acetolactate synthase 84.4 0.39 9.9E-06 27.4 0.9 20 335-354 499-518 (548)
166 PRK06965 acetolactate synthase 84.2 0.46 1.2E-05 26.9 1.2 32 182-213 223-254 (587)
167 PRK07092 benzoylformate decarb 84.0 0.61 1.6E-05 26.1 1.8 20 335-354 495-514 (521)
168 PRK08266 hypothetical protein; 83.8 0.5 1.3E-05 26.7 1.3 26 186-213 208-233 (531)
169 CHL00099 ilvB acetohydroxyacid 83.8 0.47 1.2E-05 26.9 1.1 17 337-353 527-543 (588)
170 pfam02776 TPP_enzyme_N Thiamin 83.5 0.32 8.2E-06 28.0 0.2 96 177-279 62-159 (172)
171 PRK08527 acetolactate synthase 83.2 0.57 1.4E-05 26.4 1.3 20 335-354 513-532 (560)
172 PRK09107 acetolactate synthase 82.6 0.68 1.7E-05 25.9 1.6 20 335-354 527-546 (594)
173 pfam01855 POR_N domain. This f 82.5 1.2 3.1E-05 24.2 2.8 114 165-291 50-163 (230)
174 PRK07119 2-ketoisovalerate fer 82.2 0.7 1.8E-05 25.8 1.5 166 86-290 7-177 (350)
175 PRK07418 acetolactate synthase 81.6 0.74 1.9E-05 25.6 1.5 42 172-213 216-257 (615)
176 PRK08155 acetolactate synthase 81.0 0.58 1.5E-05 26.3 0.7 16 338-353 520-535 (564)
177 PRK08617 acetolactate synthase 80.5 0.72 1.8E-05 25.7 1.1 18 336-353 511-528 (552)
178 PRK07586 hypothetical protein; 80.2 0.63 1.6E-05 26.1 0.7 20 335-354 489-508 (514)
179 PRK08979 acetolactate synthase 77.9 0.86 2.2E-05 25.2 0.8 16 335-350 519-534 (572)
180 cd07034 TPP_PYR_PFOR_IOR-alpha 75.2 1.4 3.6E-05 23.8 1.3 81 196-280 78-159 (160)
181 PRK09622 porA pyruvate flavodo 71.2 4.2 0.00011 20.8 2.9 164 85-289 13-182 (407)
182 cd07033 TPP_PYR_DXS_TK_like Py 66.9 4.8 0.00012 20.4 2.5 100 165-279 53-154 (156)
183 COG0674 PorA Pyruvate:ferredox 66.6 5.6 0.00014 20.0 2.8 109 165-288 61-171 (365)
184 TIGR00838 argH argininosuccina 65.6 10 0.00026 18.4 3.9 89 189-280 226-331 (469)
185 KOG0190 consensus 63.0 2.7 6.8E-05 22.1 0.6 106 181-290 287-401 (493)
186 PRK04161 tagatose 1,6-diphosph 60.6 12 0.0003 17.9 3.5 39 246-284 129-169 (326)
187 PRK11032 hypothetical protein; 59.1 14 0.00036 17.4 6.4 47 311-357 30-76 (160)
188 COG4032 Predicted thiamine-pyr 55.8 15 0.00038 17.3 3.4 108 162-280 53-162 (172)
189 PRK12399 tagatose 1,6-diphosph 51.7 16 0.00041 17.0 3.0 39 246-284 127-167 (324)
190 TIGR02810 agaZ_gatZ D-tagatose 50.9 6.3 0.00016 19.7 0.8 17 288-304 355-372 (430)
191 KOG2391 consensus 45.0 12 0.00032 17.8 1.6 66 291-360 217-296 (365)
192 cd07036 TPP_PYR_E1-PDHc-beta_l 42.6 17 0.00044 16.8 2.0 97 165-277 58-163 (167)
193 pfam07295 DUF1451 Protein of u 40.8 27 0.00069 15.6 5.1 42 311-352 20-61 (148)
194 pfam02979 NHase_alpha Nitrile 38.8 29 0.00074 15.4 4.8 14 296-310 169-182 (189)
195 COG0044 PyrC Dihydroorotase an 38.5 18 0.00045 16.8 1.6 37 183-219 144-182 (430)
196 PRK13789 phosphoribosylamine-- 37.9 6.3 0.00016 19.6 -0.8 40 71-113 62-103 (426)
197 PRK12858 tagatose 1,6-diphosph 37.4 31 0.00078 15.3 3.9 26 260-285 146-171 (340)
198 pfam04273 DUF442 Putative phos 37.0 17 0.00042 17.0 1.2 52 229-283 43-97 (110)
199 pfam09851 DUF2078 Predicted me 36.5 32 0.00081 15.2 3.4 29 308-337 44-72 (73)
200 COG1797 CobB Cobyrinic acid a, 35.4 17 0.00044 16.8 1.1 60 197-267 100-166 (451)
201 KOG1615 consensus 34.6 31 0.00078 15.3 2.3 93 81-194 86-186 (227)
202 pfam01700 Orbi_VP3 Orbivirus V 34.4 27 0.00069 15.6 1.9 37 47-89 106-145 (890)
203 PRK13406 bchD magnesium chelat 33.8 28 0.00072 15.5 2.0 34 248-282 471-506 (584)
204 pfam06570 DUF1129 Protein of u 32.5 37 0.00094 14.8 4.5 28 45-78 20-47 (206)
205 COG1303 Uncharacterized protei 32.1 37 0.00095 14.7 2.6 45 234-281 22-66 (179)
206 pfam01039 Carboxyl_trans Carbo 31.7 13 0.00033 17.6 -0.0 51 186-239 308-358 (487)
207 PRK04833 argininosuccinate lya 31.6 38 0.00097 14.7 3.7 32 313-344 390-425 (455)
208 TIGR00413 rlpA rare lipoprotei 30.8 22 0.00056 16.2 1.0 73 192-282 15-93 (218)
209 TIGR01241 FtsH_fam ATP-depende 30.4 40 0.001 14.5 4.0 28 306-333 477-504 (505)
210 cd01987 USP_OKCHK USP domain i 30.2 14 0.00037 17.4 -0.0 87 185-279 4-91 (124)
211 KOG4259 consensus 29.9 29 0.00075 15.4 1.5 44 225-274 147-190 (260)
212 TIGR00747 fabH 3-oxoacyl-(acyl 29.6 22 0.00055 16.2 0.8 22 172-193 143-164 (329)
213 TIGR02065 ECX1 exosome complex 28.2 30 0.00076 15.3 1.3 28 185-213 193-220 (231)
214 PHA00144 major head protein 28.2 32 0.00082 15.1 1.5 11 234-244 256-266 (438)
215 pfam10302 DUF2407 Putative mem 28.2 35 0.00089 14.9 1.7 47 79-125 83-135 (252)
216 COG2089 SpsE Sialic acid synth 27.8 22 0.00057 16.2 0.6 54 188-245 153-208 (347)
217 pfam03249 TSA Type specific an 27.6 31 0.00079 15.2 1.3 45 87-132 347-391 (524)
218 pfam05186 Dpy-30 Dpy-30 motif. 26.2 47 0.0012 14.1 2.0 22 300-322 20-41 (42)
219 COG0165 ArgH Argininosuccinate 25.0 50 0.0013 13.9 4.3 52 188-239 227-293 (459)
220 COG3684 LacD Tagatose-1,6-bisp 24.9 50 0.0013 13.9 3.9 41 246-286 133-174 (306)
221 cd02953 DsbDgamma DsbD gamma f 24.2 41 0.001 14.5 1.4 29 272-303 72-101 (104)
222 COG2873 MET17 O-acetylhomoseri 24.1 51 0.0013 13.8 4.7 45 61-108 63-107 (426)
223 cd01294 DHOase Dihydroorotase 24.1 29 0.00073 15.5 0.6 88 185-279 103-190 (335)
224 TIGR01325 O_suc_HS_sulf O-succ 23.8 52 0.0013 13.8 3.6 137 61-205 55-232 (386)
225 TIGR01111 mtrA tetrahydrometha 23.3 48 0.0012 14.0 1.6 27 147-173 21-52 (246)
226 pfam00782 DSPc Dual specificit 22.1 36 0.00093 14.8 0.8 32 250-281 49-80 (131)
227 pfam01071 GARS_A Phosphoribosy 21.8 57 0.0014 13.6 1.7 19 265-284 170-188 (193)
228 PRK05968 hypothetical protein; 21.7 57 0.0015 13.5 5.0 46 60-108 63-108 (389)
229 TIGR01029 rpsG_bact ribosomal 21.7 51 0.0013 13.9 1.5 75 251-345 53-132 (159)
230 PRK12308 bifunctional arginino 21.6 57 0.0015 13.5 3.5 23 219-241 272-294 (614)
231 PRK13683 hypothetical protein; 21.0 34 0.00088 14.9 0.5 42 242-287 13-54 (88)
232 KOG2672 consensus 20.7 60 0.0015 13.4 2.5 131 168-318 98-243 (360)
233 PRK07668 hypothetical protein; 20.7 60 0.0015 13.4 4.6 33 187-222 132-165 (248)
234 PRK08417 dihydroorotase; Provi 20.1 62 0.0016 13.3 2.2 36 185-220 120-155 (387)
No 1
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=0 Score=752.49 Aligned_cols=321 Identities=40% Similarity=0.727 Sum_probs=313.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 63438889999999998999999999999997898777220589878999999962389989994300689999974212
Q gi|255764490|r 43 EVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDA 122 (364)
Q Consensus 43 ~~~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~ 122 (364)
...+||+|+|+++||+|+++|+||+++.++|+||+|.||+|+++||||++||++.+|+++||+||+||+|+++|++|+|+
T Consensus 15 ~~~~ls~e~ll~~yr~M~l~R~fee~~~~l~~qG~i~g~~h~~~GqEA~~vg~~~al~~~D~i~~~yR~h~~~la~G~~~ 94 (343)
T CHL00149 15 NSVNLNKEEALVLYRDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKALKPTDYVCSTYRDHVHALSKGVPP 94 (343)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCH
T ss_conf 45898999999999999999999999999997799760646888689999999997799998970515278799819999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCH
Q ss_conf 2223432101234434556773211122123676674667674325431001123-------344443310256654302
Q gi|255764490|r 123 SKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYR-------RSDKICVVCFGDGAANQG 195 (364)
Q Consensus 123 ~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~-------~~~~v~v~~~GDGa~~eG 195 (364)
.++|+|+|||++|+|+|||||||+++++.++++.+++||+|+|+|+|+|++.|++ ++++|++||||||+++||
T Consensus 95 ~~~~ael~Gk~~G~~~GrggsmH~~~~~~~~~g~~~ivg~~~p~A~G~A~a~~~~~~~~k~~g~~~V~v~ffGDGat~eG 174 (343)
T CHL00149 95 REVMAELFGKETGCSKGRGGSMHLFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKDTQELRVTACFFGDGTTNNG 174 (343)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
T ss_conf 99999975888999999999777667222712455343345306999999999875430247898279998357633203
Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCE
Q ss_conf 45676544321140111022103434444432321486435777776311112100002336887542102455454655
Q gi|255764490|r 196 QVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPI 275 (364)
Q Consensus 196 ~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~ 275 (364)
.||||||||++|+||||||||||+||||||.+++++.+++++|+.+||||+++|||||+++|++++++|++++|+++||+
T Consensus 175 ~fhEalN~A~~~~LPviFv~eNN~yaist~~~~~~~~~~i~~ra~~yGi~~~~vDGnD~~av~~~~~~Ai~~aR~g~gP~ 254 (343)
T CHL00149 175 QFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSEPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARSGQGPT 254 (343)
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHCCCCCHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 89999999998479768999878814657732305763377888656997201798789999999999999845699988
Q ss_pred EEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 89831566887666787667899999998983893799999999878999899999999999999999999984798788
Q gi|255764490|r 276 IIEMLTYRYRGHSMSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDP 355 (364)
Q Consensus 276 lie~~tyR~~gHs~~D~~~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~ 355 (364)
|||++|||++|||++||..||+++|++.|+ ++|||.+|+++|++.|+++++++++|+++++++|++++++|+++|+|+|
T Consensus 255 lie~~TyR~~gHs~~D~~~YR~~~E~e~w~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~A~~~p~P~~ 333 (343)
T CHL00149 255 LIEALTYRFRGHSLADPDELRSKQEKEAWI-ARDPIKKLKSYIIDNELVSQKELNKIQKEVKIEIEDAVEFAISSPEPNI 333 (343)
T ss_pred EEEEEEECCCCCCCCCCCCCCCHHHHHHHH-HCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 999986079887898735567999999888-4796999999999879999999999999999999999999983899699
Q ss_pred HHHHHCCCC
Q ss_conf 798623279
Q gi|255764490|r 356 AELYSDILI 364 (364)
Q Consensus 356 ~~l~~~Vyv 364 (364)
+++++|||.
T Consensus 334 ~~l~~~Vya 342 (343)
T CHL00149 334 SDLKRYLFA 342 (343)
T ss_pred HHHHHHHCC
T ss_conf 999876206
No 2
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=0 Score=755.96 Aligned_cols=320 Identities=48% Similarity=0.795 Sum_probs=312.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CEEEECCCCHHHHHHHHHHH
Q ss_conf 34388899999999989999999999999978987772205898789999999623899-89994300689999974212
Q gi|255764490|r 44 VSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEG-DQMITAYREHGHILACGVDA 122 (364)
Q Consensus 44 ~~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al~~~-D~~~~~yR~~~~~l~~G~~~ 122 (364)
...+++++|+++||+|+++|+||+++.++|+||+|+||+|+++||||++||++.+|+++ ||++|+||+|+++|++|+|+
T Consensus 21 ~~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~~YR~h~~~l~~G~~~ 100 (358)
T COG1071 21 NAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFPTYRDHGHLLARGVPL 100 (358)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCEEEECCCCH
T ss_conf 45689999999999999999999999999857776657577666799999999843889887503557650100259999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHH
Q ss_conf 22234321012344345567732111221236766746676743254310011233444-43310256654302456765
Q gi|255764490|r 123 SKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDK-ICVVCFGDGAANQGQVYESF 201 (364)
Q Consensus 123 ~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~-v~v~~~GDGa~~eG~f~Eal 201 (364)
.++|++++||++|+|+|||||||+++++.|+++.++|||+|+|+|+|+|+|.||++++. |++||||||+++||+|||+|
T Consensus 101 ~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEal 180 (358)
T COG1071 101 KEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEAL 180 (358)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHH
T ss_conf 99999985524588888888631011000457878404665347999999999748998189999457865533399998
Q ss_pred HHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf 44321140111022103434444432321486435777776311112100002336887542102455454655898315
Q gi|255764490|r 202 NIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364)
Q Consensus 202 n~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364)
|||++||||+||+||||+||||+|.+.|+..+.++.|+.+||||+++|||||+++||+++++|++++|+|+||+|||++|
T Consensus 181 N~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~t 260 (358)
T COG1071 181 NFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVT 260 (358)
T ss_pred HHHHHHCCCEEEEEECCCCEEECCHHHCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 99998569879999668716704566403324677550105887278779779999999999999997489988999987
Q ss_pred CCCCCCCCCCC-CCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 66887666787-66789999999898389379999999987899989999999999999999999998479878879862
Q gi|255764490|r 282 YRYRGHSMSDP-ANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYS 360 (364)
Q Consensus 282 yR~~gHs~~D~-~~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~~~l~~ 360 (364)
||++|||++|| .+||+++|+++|++ +|||.+++++|++.|++|++++++|+++++++|++++++|+++|+|+++++|+
T Consensus 261 YR~~~HS~sDd~~~YRskeE~~~~~~-~DPi~r~~~~L~~~g~~see~~~~i~~e~~~~V~ea~e~a~~~p~P~~~~~~~ 339 (358)
T COG1071 261 YRYGGHSTSDDPSKYRSKEEVEEWKK-RDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVDEAVEFAEASPYPDVSELFE 339 (358)
T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHC-CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 53588877798333679899987750-69499999999976898999999999999999999999997089998467651
Q ss_pred CCCC
Q ss_conf 3279
Q gi|255764490|r 361 DILI 364 (364)
Q Consensus 361 ~Vyv 364 (364)
|||.
T Consensus 340 ~Vy~ 343 (358)
T COG1071 340 DVYA 343 (358)
T ss_pred CCCC
T ss_conf 3214
No 3
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=0 Score=751.05 Aligned_cols=314 Identities=62% Similarity=1.019 Sum_probs=311.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 89999999998999999999999997898777220589878999999962389989994300689999974212222343
Q gi|255764490|r 49 KEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAE 128 (364)
Q Consensus 49 ~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae 128 (364)
||+|+++||+|+++|.||+++.++|+||+|+||+|+|+||||++||++.+|+++||+||+||+|+++|++|++++++|+|
T Consensus 1 ke~ll~~yr~M~~~R~~e~~~~~l~~qG~i~g~~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~hg~~la~G~~~~~~~ae 80 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE 80 (315)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHCCCHHHHHHH
T ss_conf 97999999999999999999999997798884623888769999999997799888985133789999958999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 21012344345567732111221236766746676743254310011233444433102566543024567654432114
Q gi|255764490|r 129 LTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWN 208 (364)
Q Consensus 129 ~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~ 208 (364)
++||++|+|+|||||||+++++.|+++.++|||+|+|+|+|+|+|.|++++++|++||||||+++||.||||||||++|+
T Consensus 81 l~g~~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~~G~f~EalN~A~~~~ 160 (315)
T TIGR03182 81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWK 160 (315)
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCC
T ss_conf 83678899999999776445212777887304037438776999998608998799995788665343999998874148
Q ss_pred CHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 01110221034344444323214864357777763111121000023368875421024554546558983156688766
Q gi|255764490|r 209 LNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHS 288 (364)
Q Consensus 209 lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs 288 (364)
||||||||||+||||||.+++++.+++++|+.+||||+++|||||+++|++++++|++++|+++||+|||++|||+.|||
T Consensus 161 lPvifv~eNN~yaist~~~~~~~~~~i~~ra~~~gi~~~~vDGnD~~av~~~~~~Ai~~~R~g~gP~lie~~tyR~~gHs 240 (315)
T TIGR03182 161 LPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHS 240 (315)
T ss_pred CCEEEEEEECCCCCCCCHHHHCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
T ss_conf 98899995287415576777536633666554369985898357789999999999999755999889998742688889
Q ss_pred CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCC
Q ss_conf 678766789999999898389379999999987899989999999999999999999998479878879862327
Q gi|255764490|r 289 MSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDIL 363 (364)
Q Consensus 289 ~~D~~~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~~~l~~~Vy 363 (364)
++||..||+++|+++|+ ++|||.+|+++|+++|++|++++++|+++++++|++++++|+++|+|+|+++|+|||
T Consensus 241 ~~D~~~YR~~~E~~~w~-~rDPi~~~~~~L~~~g~~~~~~~~~i~~~~~~ev~~a~~~A~~~p~P~~~~l~~~VY 314 (315)
T TIGR03182 241 MSDPAKYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFAENSPEPPVEELYTDVY 314 (315)
T ss_pred CCCCCCCCCHHHHHHHH-HCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
T ss_conf 98730246989999888-479399999999987999999999999999999999999998588979999985034
No 4
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=0 Score=714.13 Aligned_cols=313 Identities=31% Similarity=0.515 Sum_probs=301.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHH
Q ss_conf 77634388899999999989999999999999978987772205898789999999623899899943006899999742
Q gi|255764490|r 41 GFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGV 120 (364)
Q Consensus 41 ~~~~~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~ 120 (364)
....++||+|+|+++||+|+++|+||+++.++|+||+| ||+|+|+||||++||++.+|+++||++++||+|+++|++|+
T Consensus 15 ~~~~~~ls~e~ll~~yr~M~~~R~~e~~~~~l~~~G~i-g~~~~~~GqEA~avg~~~aL~~~D~i~~~yR~hg~~la~G~ 93 (341)
T TIGR03181 15 PEPAPDLSDEELVELYRDMVLTRRFDTKALALQRQGRL-GTYAPNLGQEAAQVGSALALRKDDWVFPSYRDHAAMLARGV 93 (341)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHEECCC
T ss_conf 87789989999999999999999999999999967986-57679997399999999758987989715672363312799
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 12222343210123443455677321112212367667466767432543100112334444331025665430245676
Q gi|255764490|r 121 DASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYES 200 (364)
Q Consensus 121 ~~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ea 200 (364)
++.++|++++|+.+|++. ++..|+++.++|||+|+|+|+|+|+|.|++++++|++||||||+++||.||||
T Consensus 94 ~~~~~~ae~~G~~~G~~~---------~~~~~~~~~~~iVG~~~p~A~G~A~a~k~~~~~~V~v~ffGDGA~~eG~fhEa 164 (341)
T TIGR03181 94 PLVEILLYWRGDERGSWD---------PEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEA 164 (341)
T ss_pred CHHHHHHHHCCCCCCCCC---------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHH
T ss_conf 899999985597767888---------60147688874013465414778889987299988999946886432469999
Q ss_pred HHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf 54432114011102210343444443232148643577777631111210000233688754210245545465589831
Q gi|255764490|r 201 FNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEML 280 (364)
Q Consensus 201 ln~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ 280 (364)
||||++|+||||||||||+||||||.+++++..++++|+.+||||+++|||||+++|++++++|++++|+++||+|||++
T Consensus 165 lN~Aa~~~LPviFv~eNN~yaist~~~~~~~~~~i~~ra~~yGi~~~~vDG~D~~av~~a~~~Av~~~R~g~gP~liE~~ 244 (341)
T TIGR03181 165 LNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAV 244 (341)
T ss_pred HHHHHHHCCCEEEEEEECCCCCCCCHHHHCCCCHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 99999838998999961773577763342377369875142498867448856799999999999998558998899998
Q ss_pred CCCCCCCCCCC-CCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 56688766678-76678999999989838937999999998789998999999999999999999999847987887986
Q gi|255764490|r 281 TYRYRGHSMSD-PANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELY 359 (364)
Q Consensus 281 tyR~~gHs~~D-~~~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~~~l~ 359 (364)
|||++|||++| +..||+++|+++|+ ++|||.+|+++|+++|+++++++++|+++++++|++++++|+++|+|+|++++
T Consensus 245 TyR~~gHs~~Dd~~~YR~~~E~~~w~-~~DPi~~~~~~L~~~g~~~e~e~~~i~~~i~~ev~~a~~~A~~sp~P~~~~l~ 323 (341)
T TIGR03181 245 TYRLGPHTTADDPTRYRTKEEEEEWR-KKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAEALALPPPPVDDIF 323 (341)
T ss_pred EECCCCCCCCCCCCCCCCHHHHHHHH-HCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 50278867889987788989999988-58949999999998799999999999999999999999999968897999998
Q ss_pred HCCCC
Q ss_conf 23279
Q gi|255764490|r 360 SDILI 364 (364)
Q Consensus 360 ~~Vyv 364 (364)
+|||-
T Consensus 324 ~~VYa 328 (341)
T TIGR03181 324 DHVYA 328 (341)
T ss_pred HHHCC
T ss_conf 54116
No 5
>KOG0225 consensus
Probab=100.00 E-value=0 Score=698.10 Aligned_cols=353 Identities=52% Similarity=0.861 Sum_probs=322.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 4344444556899984434321111135754-----457763-4388899999999989999999999999978987772
Q gi|255764490|r 8 VTVGDIKMALNPSVSAKRAATSSVDCVDIPF-----LEGFEV-SEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGF 81 (364)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~ 81 (364)
++.+....+.+++....+..+........++ .+++.. -++|+|++|++||+|+++|+||+.+.++|++++|+||
T Consensus 11 ~l~~~~~~~~s~~~~~~r~~~~~~~~~~~~~~~~~l~~~p~~s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGF 90 (394)
T KOG0225 11 LLRPLAQAPPSRTLVNTRLVPSDVTFESSPFELHKLEEGPSTSVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGF 90 (394)
T ss_pred HHCHHHHCCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEE
T ss_conf 64305326863001003457643310256406887157998159950888999999999999999999998865211213
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20589878999999962389989994300689999974212222343210123443455677321112212367667466
Q gi|255764490|r 82 CHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVG 161 (364)
Q Consensus 82 ~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg 161 (364)
||+|+|||||+||+..+|++.|.++++||+|++.+.+|+++.++|+|++|+.+|||+|+|||||++.+ +|++.+||||
T Consensus 91 CHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~~~v~aEL~Gr~~Gc~kGKGGSMHmy~k--~FyGGnGIVG 168 (394)
T KOG0225 91 CHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSVREVLAELMGRQAGCSKGKGGSMHMYAK--NFYGGNGIVG 168 (394)
T ss_pred EEECCCHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCEEEECC--CCCCCCCEEC
T ss_conf 66326579999999985467774477765205886438619999999846212556677861055032--3347664232
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 76743254310011233444433102566543024567654432114011102210343444443232148643577777
Q gi|255764490|r 162 AQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVS 241 (364)
Q Consensus 162 ~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~ 241 (364)
.|+|+++|+|+|.||++++.|+++++||||+|||++|||+|||.+|+||+|||||||+|+|.|+.++.++.+++++|+ .
T Consensus 169 AQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG-~ 247 (394)
T KOG0225 169 AQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYGMGTSAERASASTEYYKRG-D 247 (394)
T ss_pred CCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHCCHHHHHCC-C
T ss_conf 577731128999974368865999954665444038988539998689879998268876676034320382777506-8
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCC-CCCCCHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 631111210000233688754210245545465589831566887666787-6678999999989838937999999998
Q gi|255764490|r 242 FNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDP-ANYRTREEINEMRSNHDPIEQVRKRLLH 320 (364)
Q Consensus 242 ~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D~-~~YR~~~Ei~~~~~~~DPI~~~~~~L~~ 320 (364)
| |||++|||+|+++|+++.+.|++|+++|+||.|+|+.||||+|||.||| ..||++||++..|.+||||..++++|++
T Consensus 248 y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~ 326 (394)
T KOG0225 248 Y-IPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIE 326 (394)
T ss_pred C-CCCEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 7-875578783124589999999999753799879998634654654689986521189999887605848999999987
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCC
Q ss_conf 78999899999999999999999999984798788798623279
Q gi|255764490|r 321 NKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSDILI 364 (364)
Q Consensus 321 ~g~~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~~~l~~~Vyv 364 (364)
.++.+++|+++|+++++++|++++++|.++|.|++++|+.|||+
T Consensus 327 ~~late~ELKai~k~irkeVdeav~~A~~~p~p~~~eL~~dvy~ 370 (394)
T KOG0225 327 LGLATEEELKAIDKEIRKEVDEAVAFATASPEPEPSELFTDVYV 370 (394)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
T ss_conf 03667999999999999999999987632899998998777522
No 6
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=0 Score=675.72 Aligned_cols=292 Identities=49% Similarity=0.835 Sum_probs=286.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99998999999999999997898777220589878999999962389989994300689999974212222343210123
Q gi|255764490|r 55 AYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQG 134 (364)
Q Consensus 55 ~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk~~ 134 (364)
+||+|+++|.||+++.++++||+|++|+|+++||||++||++.+|+++||+||+||+|+++|++|+++.++|+|++||++
T Consensus 1 ~y~~M~~~R~~e~~~~~l~~~G~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 97899999999999999997896865520878769999999986899898981452089999909999999999825777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH
Q ss_conf 44345567732111221236766746676743254310011233444433102566543024567654432114011102
Q gi|255764490|r 135 GISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYV 214 (364)
Q Consensus 135 g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifv 214 (364)
|+++||+||||+++++.|+++.+++||+|+|+|+|+|+|.|++++++|++||||||+++||.||||||||++|+||+|||
T Consensus 81 g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDGa~~~G~f~EalN~A~~~~LPvlfv 160 (293)
T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV 160 (293)
T ss_pred CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 88888888685887102050465412466334776789999758998899971687455147999999886537987999
Q ss_pred HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCC-CCC
Q ss_conf 2103434444432321486435777776311112100002336887542102455454655898315668876667-876
Q gi|255764490|r 215 IENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMS-DPA 293 (364)
Q Consensus 215 venN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~-D~~ 293 (364)
||||+||||||.++|++..++++|+.+||||+++|||||+++|++++++|++++|+++||+|||++|||++|||++ |+.
T Consensus 161 ~enN~yaist~~~~~~~~~~~~~r~~~~gi~~~~vDG~D~~~v~~~~~~Ai~~~R~~~gP~lie~~TyR~~gHs~~dd~~ 240 (293)
T cd02000 161 CENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPS 240 (293)
T ss_pred EEECCEECCCCHHHHCCCCCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCC
T ss_conf 97487302356887327744877353269876997487899999999999999853899889999856167556889865
Q ss_pred CCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 678999999989838937999999998789998999999999999999999999
Q gi|255764490|r 294 NYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFA 347 (364)
Q Consensus 294 ~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~te~e~~~i~~~~~~~v~~a~~~A 347 (364)
.||+++|+++|+ ++|||.+++++|+++|++|++++++|+++++++|++++++|
T Consensus 241 ~YR~~~E~~~~~-~~DPi~~~~~~L~~~g~~te~~~~~i~~ei~~~V~~A~~~A 293 (293)
T cd02000 241 RYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293 (293)
T ss_pred CCCCHHHHHHHH-HCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 688999999888-47919999999998799999999999999999999999519
No 7
>pfam00676 E1_dh Dehydrogenase E1 component. This family uses thiamine pyrophosphate as a cofactor. This family includes pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate dehydrogenase.
Probab=100.00 E-value=0 Score=672.18 Aligned_cols=300 Identities=51% Similarity=0.859 Sum_probs=284.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99989999999999999978987772205898789999999623899899943006899999742122223432101234
Q gi|255764490|r 56 YRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGG 135 (364)
Q Consensus 56 yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk~~g 135 (364)
||+|++.|..|+++..+++|| +.||+|+++||||++||++.+|+++||+||+||+|+++|++|+++.++|+|++||.+|
T Consensus 1 Yr~m~~~r~ed~~~~~~~~~~-~~g~~h~~~GqEA~~vg~~~~l~~~D~~~~~yR~~g~~la~G~~~~~~~ae~~Gk~~g 79 (303)
T pfam00676 1 YRMMTLRRMEDARMALYQRKG-RRGFCHLYAGQEALQVGIAAALNPGDYVIPTYRDHGNLLARGVSLEQVMAELTGNEAG 79 (303)
T ss_pred CCCHHHHHHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCHHHHHHHHCCCCCC
T ss_conf 905599999999999997389-8246489888899999999976999999806666999998199999999997789889
Q ss_pred CCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHH
Q ss_conf 434556773211--122123676674667674325431001123344443310256654302456765443211401110
Q gi|255764490|r 136 ISKGKGGSMHMF--STKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIY 213 (364)
Q Consensus 136 ~~~Gr~gs~H~~--~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvif 213 (364)
+|+|||||||++ +++.+|++.+++||+|+|+|+|+|+|.|++++++|++||+|||+++||.||||||||++|+|||||
T Consensus 80 ~~~Grggsmh~~~~~~~~~~~~~~~~vg~~~~~avG~A~a~k~~~~~~v~v~~~GDGa~~~G~f~EalN~A~~~~lPvif 159 (303)
T pfam00676 80 CSKGKGGSMHGYYAPKNNRFYGGNGIVGAQVPLGAGIALAAKYRGKKEVAITLFGDGATNQGQFFEALNFAALWKLPVIF 159 (303)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 98999997745766644551478741304822656689999963899879999679975232999999987543898799
Q ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCC-
Q ss_conf 2210343444443232148643577777631111210000233688754210245545465589831566887666787-
Q gi|255764490|r 214 VIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDP- 292 (364)
Q Consensus 214 vvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D~- 292 (364)
|||||+||||||.++++..+++++|+++||||+++|||||+++|++++++|++++|+++||+|||++|||+.||+++|+
T Consensus 160 v~eNN~yaist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~aR~g~gP~lie~~tyR~~gHs~~D~~ 239 (303)
T pfam00676 160 VCENNQYAISTPAERSSASTYYADRARGYGIPGIRVDGMDPLAVYQAVKFAAERARTGNGPTLIELVTYRYGGHSMSDDP 239 (303)
T ss_pred EEEECCCCCCCCHHHHCCCCCHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 99527733666664514755488886525802896488658999999999999986489988998751137866788887
Q ss_pred CCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 6678999999989838937999999998789998999999999999999999999847987887
Q gi|255764490|r 293 ANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPA 356 (364)
Q Consensus 293 ~~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~~ 356 (364)
..||+++|+++||+++|||.+++++|+++|++|++++++|+++++++|++|+++|+++|+|+|+
T Consensus 240 ~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~ev~~a~~~A~~~p~P~pe 303 (303)
T pfam00676 240 STYRTREEVEEVRKKKDPIKRLKKHLVSRGVVSEEELKEIEKEVRKEIEEAVKKAESDPEPNPE 303 (303)
T ss_pred CCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 6777989999988659969999999998799999999999999999999999999808694899
No 8
>KOG1182 consensus
Probab=100.00 E-value=0 Score=557.03 Aligned_cols=319 Identities=29% Similarity=0.457 Sum_probs=311.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 34388899999999989999999999999978987772205898789999999623899899943006899999742122
Q gi|255764490|r 44 VSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDAS 123 (364)
Q Consensus 44 ~~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~ 123 (364)
.+.+++|..++||++|++...+|..+-+.+|||+| +|+.++.|+||+.+|.++||.|.|.+++.||.-|.+|+||.+++
T Consensus 80 dp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRi-SFYmT~~GEEa~higSAAAL~p~Dli~gQYREaGVLlwRgftle 158 (432)
T KOG1182 80 DPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRI-SFYMTNFGEEAIHIGSAAALEPQDLIYGQYREAGVLLWRGFTLE 158 (432)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE-EEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCHH
T ss_conf 78846999999999889999999998887636437-89870344123101235417830222311355736888485299
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 223432101234434556773211122123676674667674325431001123344-4433102566543024567654
Q gi|255764490|r 124 KIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSD-KICVVCFGDGAANQGQVYESFN 202 (364)
Q Consensus 124 ~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~-~v~v~~~GDGa~~eG~f~Ealn 202 (364)
++|++.||+..+.-+||+|++|+++++.|++..++++.+|+|.|+|+|+|.|.++++ +++|||||||+++||+||.++|
T Consensus 159 ~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~N 238 (432)
T KOG1182 159 EFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFN 238 (432)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHH
T ss_conf 99987427853014665365213755232699615543026265545666540446780799994578666653233320
Q ss_pred HHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf 43211401110221034344444323214864357777763111121000023368875421024554546558983156
Q gi|255764490|r 203 IAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTY 282 (364)
Q Consensus 203 ~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ty 282 (364)
||++.+.|+||+|-|||||||||+++|+.++.|+-|+.+|||.+++|||||+++||.++++|++.+..+++|+|||+.||
T Consensus 239 fAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtY 318 (432)
T KOG1182 239 FAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTY 318 (432)
T ss_pred HHHHHCCCEEEEECCCCEEECCCCHHHHCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 78772798899982797564056478706785587346563579986683167999988999999875168603564566
Q ss_pred CCCCCCCCCCC-CCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHC
Q ss_conf 68876667876-67899999998983893799999999878999899999999999999999999984798788798623
Q gi|255764490|r 283 RYRGHSMSDPA-NYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAELYSD 361 (364)
Q Consensus 283 R~~gHs~~D~~-~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~~~l~~~ 361 (364)
|.+.||+|||. .||+-+|++.|.+.+.||.+|++++..+|+|+|+.-.++.+++++.|.++++.|++-+.|.+.+||+|
T Consensus 319 RvGHHSTSDDSt~YRsadEiq~W~~~~~pisrfr~~i~~~GWw~ee~E~~~rk~~rk~vl~a~~~aEk~~K~~~~~lF~d 398 (432)
T KOG1182 319 RVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIESNGWWSEEDESELRKNIRKKVLEAIAAAEKKEKPNLTELFED 398 (432)
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 52466677753013551255454305680799999887467757146899999999999999998761358998998888
Q ss_pred CC
Q ss_conf 27
Q gi|255764490|r 362 IL 363 (364)
Q Consensus 362 Vy 363 (364)
||
T Consensus 399 VY 400 (432)
T KOG1182 399 VY 400 (432)
T ss_pred HH
T ss_conf 86
No 9
>PRK09404 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=3.1e-32 Score=226.78 Aligned_cols=306 Identities=20% Similarity=0.270 Sum_probs=244.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHHHHCC------CCCEEEE-CCCCHHHHH
Q ss_conf 438889999999998999999999999997-89877722058987899999996238------9989994-300689999
Q gi|255764490|r 45 SEFNKEQELSAYRLMLLIRRFEEKAGQLYG-MGMVGGFCHLCIGQEAVIVGMKMSLT------EGDQMIT-AYREHGHIL 116 (364)
Q Consensus 45 ~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~-qg~i~g~~~~~~GqEa~~vg~~~al~------~~D~~~~-~yR~~~~~l 116 (364)
.++|+|+-+.+++.++.+-.||.-+..-|. +++ | +-.|-|+...++...++ -++.+++ .||++--.|
T Consensus 189 ~~~s~eeKk~IL~~L~~Ae~FE~FL~~Kf~g~KR---F--slEG~EslIp~l~~li~~~~~~gv~~iviGMaHRGRLNvL 263 (931)
T PRK09404 189 PTFSAEEKKAILERLTAAEGFERFLHTKFVGQKR---F--SLEGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVL 263 (931)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE---E--CCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH
T ss_conf 9989999999999999999999999887256336---5--0567016999999999999876987689625654318999
Q ss_pred H--HHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCC----------CCCCCCCCCCCCCCCCCCCCCCCCCCC-----C
Q ss_conf 9--742122223432101234434556-773211122----------123676674667674325431001123-----3
Q gi|255764490|r 117 A--CGVDASKIMAELTGRQGGISKGKG-GSMHMFSTK----------NGFYGGHGIVGAQVSLGTGIAFANKYR-----R 178 (364)
Q Consensus 117 ~--~G~~~~~~~ae~~gk~~g~~~Gr~-gs~H~~~~~----------~~~~~~~~~vg~~~p~A~G~A~a~k~~-----~ 178 (364)
+ .|-++..+|+|+.|+......|.| ---|++... ....+.-|.+-.--|++.|.+.|.+.. +
T Consensus 264 ~nvl~kp~~~iF~EF~g~~~~~~~~sGDVKYHlG~s~~~~~~g~~v~~sL~~NPSHLEaVnPVv~G~~RA~Qd~~~d~~~ 343 (931)
T PRK09404 264 VNVLGKPPRDLFAEFEGKHADEVLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDTDR 343 (931)
T ss_pred HHHHCCCHHHHHHHHCCCCCHHCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCEEEECCEECCCHHHHHHHHCCCCC
T ss_conf 98856899999987458983010356771536705656650896589983489764256666110201344565177765
Q ss_pred CCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCC---HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHH
Q ss_conf 4444331025665-430245676544321140---111022103434444432321486435777776311112100002
Q gi|255764490|r 179 SDKICVVCFGDGA-ANQGQVYESFNIAALWNL---NVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDI 254 (364)
Q Consensus 179 ~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~l---PvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~ 254 (364)
++-+.|..+||+| ++||.++|+|||+.+..- -.|.||.|||.|-.|......+..-..+.|+.+++|.++|||.||
T Consensus 344 ~kvlpiliHGDAAfaGQGvV~Etl~ls~l~gY~tGGTIHiIvNNQIGFTT~p~d~RSs~Y~TDiAK~i~aPI~HVN~Ddp 423 (931)
T PRK09404 344 SKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTNPRDSRSTPYCTDVAKMIQAPIFHVNGDDP 423 (931)
T ss_pred CEEEEEEEECCHHHCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHCCCCCCCCHHHHHHCCCEEEECCCCH
T ss_conf 62578887444432146566987654138886548648999616422214730213676631167874684688648987
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 33688754210245545465589831566887666787667899999998983893799999999878999899999999
Q gi|255764490|r 255 RAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEM 334 (364)
Q Consensus 255 ~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D~~~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~te~e~~~i~~ 334 (364)
++|..+++-|++|..+.++.++|++.|||.+||++.|...+..+.-.+..+++..+...+.+.|++.|++|+++++++.+
T Consensus 424 Eav~~~~~lA~eyR~~F~kDVvIDlvcYRr~GHNE~DeP~fTQP~mY~~I~~hp~v~~~Y~~~L~~~g~it~~~~~~~~~ 503 (931)
T PRK09404 424 EAVVFATQLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLMYKKIKKHPTTRKLYADKLVAEGVITEEEADEMVN 503 (931)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 99999999999999985887079777652037776688666787888887649988999999987649989999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 9999999999999847987887
Q gi|255764490|r 335 NVRKIINNSVEFAQSDKEPDPA 356 (364)
Q Consensus 335 ~~~~~v~~a~~~A~~~p~P~~~ 356 (364)
+.++.++++++.+++.. |.+.
T Consensus 504 ~~~~~l~~~~~~~~~~~-~~~~ 524 (931)
T PRK09404 504 EYRDALDAGFEVVKEYK-PNKA 524 (931)
T ss_pred HHHHHHHHHHHHHCCCC-CCCC
T ss_conf 99999999987640136-7776
No 10
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.97 E-value=4.3e-30 Score=213.03 Aligned_cols=302 Identities=19% Similarity=0.206 Sum_probs=236.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHHHHCC------CCCEEEE-CCCCHHHHH
Q ss_conf 438889999999998999999999999997-89877722058987899999996238------9989994-300689999
Q gi|255764490|r 45 SEFNKEQELSAYRLMLLIRRFEEKAGQLYG-MGMVGGFCHLCIGQEAVIVGMKMSLT------EGDQMIT-AYREHGHIL 116 (364)
Q Consensus 45 ~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~-qg~i~g~~~~~~GqEa~~vg~~~al~------~~D~~~~-~yR~~~~~l 116 (364)
.++|+++-+.+++.+..+-.||.-+..-|- |++ | . --|-|....++...+. -++.+++ .||+..-.|
T Consensus 493 ~~~s~~~k~~iL~~L~~Ae~FE~FL~~Ky~GqKR---F-s-LEG~EslIP~ld~~i~~aa~~Gv~evviGMaHRGRLNVL 567 (1234)
T PRK12270 493 EKPTRAEQKYILSKLNAAEAFETFLQTKYVGQKR---F-S-LEGAESVIPLLDAVIDQAAEHGLDEVVIGMAHRGRLNVL 567 (1234)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE---E-C-CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH
T ss_conf 8999899999999999999999999864677534---3-5-677258999999999999876988799816874079999
Q ss_pred H--HHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCC------CCC-----CCCCCCCCCCCCCCCCCCCCCCCCC---C
Q ss_conf 9--74212222343210123443455677--321112------212-----3676674667674325431001123---3
Q gi|255764490|r 117 A--CGVDASKIMAELTGRQGGISKGKGGS--MHMFST------KNG-----FYGGHGIVGAQVSLGTGIAFANKYR---R 178 (364)
Q Consensus 117 ~--~G~~~~~~~ae~~gk~~g~~~Gr~gs--~H~~~~------~~~-----~~~~~~~vg~~~p~A~G~A~a~k~~---~ 178 (364)
+ .|-++.++|+|+-|+.....-+..|. -|++.. ..+ ....-|.+-.--|+..|.+.|.+.. +
T Consensus 568 ~Ni~gKp~~~iF~EFeg~~~p~~~~gsGDVKYHlG~s~~~~~~~G~~v~lsL~~NPSHLEaVnPVv~G~~RAkQd~~~~~ 647 (1234)
T PRK12270 568 ANIVGKPYSQIFREFEGNLDPRQAHGSGDVKYHLGAEGTYTQMFGNEIKVSLAANPSHLEAVDPVLEGIVRAKQDLLDKG 647 (1234)
T ss_pred HHHHCCCHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCEEECCEEEEEHHHHHHHHCCC
T ss_conf 98708999999998579988021267787244676531133378977889844898633011673310023335654357
Q ss_pred C---CCCCCCCCCCCC-CCCHHHHHHHHHHHHCCC---HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 4---444331025665-430245676544321140---111022103434444432321486435777776311112100
Q gi|255764490|r 179 S---DKICVVCFGDGA-ANQGQVYESFNIAALWNL---NVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDG 251 (364)
Q Consensus 179 ~---~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~l---PvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG 251 (364)
. +-+.|..+||+| +.||.++|+|||+.+..- -.|.||.|||.|-.|......+..-..+.|+.+++|.++|||
T Consensus 648 ~~~~~vlpiliHGDAAFaGQGVV~ETlnlS~L~gY~tGGTIHiVVNNQIGFTT~P~daRSS~YcTDvAK~i~aPIfHVNg 727 (1234)
T PRK12270 648 EDGFTVLPLLLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQIGFTTAPESSRSSEYATDVAKMIQAPIFHVNG 727 (1234)
T ss_pred CCCCEEEEEEEECHHHHCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEECC
T ss_conf 77751467887430332257778987531158987668758999617601137821145666721578875785688558
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 00233688754210245545465589831566887666787667899999998983893799999999878999899999
Q gi|255764490|r 252 MDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKE 331 (364)
Q Consensus 252 ~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D~~~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~te~e~~~ 331 (364)
.||++|..+++-|++|..+.++.++|++.|||.+||++.|...+..+.-.+..+++.-+...+.+.|++.|++|++|+++
T Consensus 728 DDPEAVv~v~~LA~eyRq~F~kDVvIDLVcYRR~GHNE~DeP~fTQPlMY~~I~~hpsv~~lY~~~Li~eG~it~~e~~~ 807 (1234)
T PRK12270 728 DDPEAVVRVARLAFEYRQRFKKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDEKRSVRKLYTEALIGRGDISMEEAEQ 807 (1234)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 98799999999999999986887278667542037766678666888899998739988999999998679989999999
Q ss_pred HHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999998479
Q gi|255764490|r 332 IEMNVRKIINNSVEFAQSDK 351 (364)
Q Consensus 332 i~~~~~~~v~~a~~~A~~~p 351 (364)
+.++.++.++++++.+++..
T Consensus 808 ~~~~~~~~Le~~~~~~k~~~ 827 (1234)
T PRK12270 808 ALRDYQGQLERVFNEVREAE 827 (1234)
T ss_pred HHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999864137
No 11
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.93 E-value=1.5e-24 Score=177.42 Aligned_cols=304 Identities=19% Similarity=0.225 Sum_probs=231.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHHHCC------CCCEEEE-CCCCHHH
Q ss_conf 63438889999999998999999999999997898777220589-87899999996238------9989994-3006899
Q gi|255764490|r 43 EVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCI-GQEAVIVGMKMSLT------EGDQMIT-AYREHGH 114 (364)
Q Consensus 43 ~~~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~-GqEa~~vg~~~al~------~~D~~~~-~yR~~~~ 114 (364)
..+.+++|+.+.+++.+...--||.-+ +-|..|---.|+ |-|+...++...++ -.+.+.+ .||+..-
T Consensus 168 ~~~~~~~e~k~~~l~~L~~ae~fE~fl-----~~kf~g~KRFslEG~eslip~l~~~i~~~~~~G~~~vviGMaHRGRLN 242 (906)
T COG0567 168 GKPTFTAEEKKAILKRLTAAEGFERFL-----HTKFPGAKRFSLEGGESLIPMLDELIDRAGKQGVKEVVIGMAHRGRLN 242 (906)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH-----HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH
T ss_conf 788878899999999999999999986-----242889710153545678899999999988668230784365542378
Q ss_pred HHH--HHHHHHHHHHHHHCCCCCCC-CC-----CCCCCCCCCCCC--C--CCCCCCCCCCCCCCCCCCCCCCCCCCC---
Q ss_conf 999--74212222343210123443-45-----567732111221--2--367667466767432543100112334---
Q gi|255764490|r 115 ILA--CGVDASKIMAELTGRQGGIS-KG-----KGGSMHMFSTKN--G--FYGGHGIVGAQVSLGTGIAFANKYRRS--- 179 (364)
Q Consensus 115 ~l~--~G~~~~~~~ae~~gk~~g~~-~G-----r~gs~H~~~~~~--~--~~~~~~~vg~~~p~A~G~A~a~k~~~~--- 179 (364)
+|. .|-++..+|.|+.|+..-.. .| .|+|...-.... + ....-|.+-.--|+..|.+.|.+-...
T Consensus 243 vL~nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV~G~vRa~Qd~~~d~~ 322 (906)
T COG0567 243 VLVNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDTE 322 (906)
T ss_pred HHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHCHHHHCCHHHHHHHHCCCC
T ss_conf 89988379989999984799877766666420356533334689806898348952543324465340676665413776
Q ss_pred --CCCCCCCCCCCC-CCCHHHHHHHHHHHHCCC---HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH
Q ss_conf --444331025665-430245676544321140---11102210343444443232148643577777631111210000
Q gi|255764490|r 180 --DKICVVCFGDGA-ANQGQVYESFNIAALWNL---NVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMD 253 (364)
Q Consensus 180 --~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~l---PvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D 253 (364)
+.+.+..+||.+ .+||.+.|.||+..+..- +.+.+|.||+.+-+|......+.+...+.|+.++.|.++|||.|
T Consensus 323 ~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~TDvAKm~~aPifHVN~DD 402 (906)
T COG0567 323 RDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVAKMIEAPIFHVNADD 402 (906)
T ss_pred CCEEEEEEEECCHHCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCEEECCCCC
T ss_conf 45267888743720178528999987417997666975899974577998996523478888874443678543035688
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 23368875421024554546558983156688766678766789999999898389379999999987899989999999
Q gi|255764490|r 254 IRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIE 333 (364)
Q Consensus 254 ~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D~~~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~te~e~~~i~ 333 (364)
|+||..+++.|.++....+++++|.+.|||.+||+++|......+.-.+..+.+.-+...+.+.|++.|++++++.+.+.
T Consensus 403 PEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs~TqP~mY~~I~~h~t~r~~ya~~Lv~~gvis~~~~~~~~ 482 (906)
T COG0567 403 PEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPSVTQPLMYQKIKKHPTVRKLYADKLIAEGVISEEEADELV 482 (906)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 33302667778999863378722322557888987554300127899998764997144479999762232599999999
Q ss_pred HHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999998479
Q gi|255764490|r 334 MNVRKIINNSVEFAQSDK 351 (364)
Q Consensus 334 ~~~~~~v~~a~~~A~~~p 351 (364)
++.+..++..+......-
T Consensus 483 ~~~r~~L~~~~~~~~~~~ 500 (906)
T COG0567 483 NDYRDALDQGFEVVKEYK 500 (906)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999998630546676666
No 12
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.92 E-value=9.3e-26 Score=185.25 Aligned_cols=147 Identities=23% Similarity=0.369 Sum_probs=128.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHCCCCCCCCCCCCC
Q ss_conf 12367667466767432543100112334444331025665430245676544321140-11102210343444443232
Q gi|255764490|r 151 NGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNL-NVIYVIENNQYAMGTSVSRA 229 (364)
Q Consensus 151 ~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~l-PvifvvenN~~aist~~~~~ 229 (364)
.++-..+|.+|.++++|+|+|+|.|+++.++.++|++|||+++||.+|||+|+|+.++| ++|++|.||+++++.+++..
T Consensus 98 ~gi~~stGsLG~gls~a~G~A~a~k~~~~~~~v~~~iGDGel~EG~~wEAl~~A~~~~L~nLi~ivD~N~~~~~g~~~~~ 177 (255)
T cd02012 98 PGVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDI 177 (255)
T ss_pred CCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCC
T ss_conf 99651787537789999999999986288871799942511033128999999855587756999868982625603025
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC--CCCC-CCCCHHH
Q ss_conf 148643577777631111210000233688754210245545465589831566887666--7876-6789999
Q gi|255764490|r 230 SAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSM--SDPA-NYRTREE 300 (364)
Q Consensus 230 ~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~--~D~~-~YR~~~E 300 (364)
....++.++.++|||..+.|||+|+.+++++++++.. ...+|++|+++|..-.|-+. .++. .|++..+
T Consensus 178 ~~~~~l~~~~~sfG~~v~~vdGhd~~~i~~a~~~a~~---~~~kP~~I~~~T~KGkG~~~~E~~~~~H~~~~~~ 248 (255)
T cd02012 178 LFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKK---SKGKPTLIIAKTIKGKGVPFMENTAKWHGKPLGE 248 (255)
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH---CCCCCEEEEEEEEECCCCCHHCCCCCCCCCCCCH
T ss_conf 4768899999966981110179999999999999986---7999589999965114882321997200699998
No 13
>KOG0451 consensus
Probab=99.92 E-value=2.6e-24 Score=175.97 Aligned_cols=301 Identities=20% Similarity=0.277 Sum_probs=227.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCHHHHHHHH------HHHCCCCCEEEE-CCCCH
Q ss_conf 76343888999999999899999999999999789877722058--9878999999------962389989994-30068
Q gi|255764490|r 42 FEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLC--IGQEAVIVGM------KMSLTEGDQMIT-AYREH 112 (364)
Q Consensus 42 ~~~~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~--~GqEa~~vg~------~~al~~~D~~~~-~yR~~ 112 (364)
....+|.+|+++++-+.|+.+..||.-+.. |.+ .+-.| -|-|....=- +..-+-+|.++. .||+.
T Consensus 149 l~~e~l~keEr~~i~~Lmlksq~fD~Flat-----KFp-TvKRYGgEGAESM~aFF~eLl~~sa~~~ie~viigmpHRGR 222 (913)
T KOG0451 149 LDQEQLGKEERCEIAELMLKSQAFDNFLAT-----KFP-TVKRYGGEGAESMLAFFWELLRDSAQANIEHVIIGMPHRGR 222 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCC-HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 889885379888899999866667778774-----163-54540554488899999999987886285058870566674
Q ss_pred HHHHH--HHHHHHHHHHHHHCCCCCC------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999--7421222234321012344------------------345567732111221236766746676743254310
Q gi|255764490|r 113 GHILA--CGVDASKIMAELTGRQGGI------------------SKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAF 172 (364)
Q Consensus 113 ~~~l~--~G~~~~~~~ae~~gk~~g~------------------~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~ 172 (364)
.-+|+ ..++|..+|..+-|.+.=+ -+|-++..|+. +++.-+.+-.--|+|+|-+.
T Consensus 223 lnLlt~Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhvt-----MlpNPSHLEAvNPVAmGKtR 297 (913)
T KOG0451 223 LNLLTALLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVT-----MLPNPSHLEAVNPVAMGKTR 297 (913)
T ss_pred CHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEE-----ECCCHHHHHCCCCHHHCCHH
T ss_conf 0588888439989999873073227503567777888732355440468844799-----55881664015725322036
Q ss_pred CCCCCC--------------CCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCC---HHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 011233--------------4444331025665-430245676544321140---1110221034344444323214864
Q gi|255764490|r 173 ANKYRR--------------SDKICVVCFGDGA-ANQGQVYESFNIAALWNL---NVIYVIENNQYAMGTSVSRASAQTN 234 (364)
Q Consensus 173 a~k~~~--------------~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~l---PvifvvenN~~aist~~~~~~~~~~ 234 (364)
+.+... ..-+.+...||++ +.||.++|++|++-+-.. -.+.+|.|||.+..||.++-.+..-
T Consensus 298 ~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rGRSs~y 377 (913)
T KOG0451 298 SRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRGRSSAY 377 (913)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCEEEEEEECCHHHCCCCCCHHHHHHCCCCCEEECCEEEEEECCCCCCCCCCCCCCCCHH
T ss_conf 77775137898987768887726899985451111586368777431487335565589996262002376446653024
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHH-H
Q ss_conf 357777763111121000023368875421024554546558983156688766678766789999999898389379-9
Q gi|255764490|r 235 FSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREEINEMRSNHDPIE-Q 313 (364)
Q Consensus 235 i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D~~~YR~~~Ei~~~~~~~DPI~-~ 313 (364)
.++.|++++.|.++|||.||++|..+++.|.+|-|..++.++|.+.|||..||.+-|+..|.++--.++.++ |.-|+ .
T Consensus 378 csDiaK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp~ftspvmyk~v~a-ReSvPdl 456 (913)
T KOG0451 378 CSDIAKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDPTFTSPVMYKEVEA-RESVPDL 456 (913)
T ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHCCCCCCCCCCCCHHHHHHHHH-HHCCCHH
T ss_conf 567898737877984799989999999999999998642225306777775234446744467047777776-4134089
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999987899989999999999999999999998479878
Q gi|255764490|r 314 VRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPD 354 (364)
Q Consensus 314 ~~~~L~~~g~~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~ 354 (364)
|.+.|++.|++|+++.+++..+.-+.+.+.++.+-..-.|+
T Consensus 457 ya~~L~~eg~~tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~ 497 (913)
T KOG0451 457 YAQQLAKEGVLTEEKVKEMRDEYMKYLNEELALAPAYQPPP 497 (913)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999861555399999999999999989984077668996
No 14
>KOG0450 consensus
Probab=99.91 E-value=1.6e-22 Score=164.47 Aligned_cols=306 Identities=21% Similarity=0.267 Sum_probs=230.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC------CCCCEEEE-CCCCHH
Q ss_conf 77634388899999999989999999999999978987772205898789999999623------89989994-300689
Q gi|255764490|r 41 GFEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSL------TEGDQMIT-AYREHG 113 (364)
Q Consensus 41 ~~~~~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al------~~~D~~~~-~yR~~~ 113 (364)
++..-++|.|+-+.++....++-.||+-+..-+...|= | - --|-|...-|+-..+ +-++.|.+ .||+..
T Consensus 240 tP~~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seKR--F-G-LEGcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRL 315 (1017)
T KOG0450 240 TPGPMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEKR--F-G-LEGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRL 315 (1017)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--C-C-CCCHHHHHHHHHHHHHHHHHCCCHHEEECCCCCCHH
T ss_conf 99851157788999999988764799998650885201--3-6-553254506789886235441802157337765326
Q ss_pred HHHHH--HHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCC---CCC---------CCCCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf 99997--42122223432101234434556-77321112---212---------367667466767432543100112--
Q gi|255764490|r 114 HILAC--GVDASKIMAELTGRQGGISKGKG-GSMHMFST---KNG---------FYGGHGIVGAQVSLGTGIAFANKY-- 176 (364)
Q Consensus 114 ~~l~~--G~~~~~~~ae~~gk~~g~~~Gr~-gs~H~~~~---~~~---------~~~~~~~vg~~~p~A~G~A~a~k~-- 176 (364)
-.|+- --++.+||.|+-|-+. ...|-| ---|++.- ..+ ....-+.+-..-|+..|-..|.++
T Consensus 316 NvL~NVvRKpl~qIfseF~g~~~-~DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~ 394 (1017)
T KOG0450 316 NVLANVVRKPLEQIFSEFSGLEA-ADEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYT 394 (1017)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCHHHCCCCCEEECHHHHHHHHC
T ss_conf 88888876079999875168877-76788753463013302666667853689995072220124862213388898860
Q ss_pred ---CCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCC---HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf ---334444331025665-430245676544321140---1110221034344444323214864357777763111121
Q gi|255764490|r 177 ---RRSDKICVVCFGDGA-ANQGQVYESFNIAALWNL---NVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQV 249 (364)
Q Consensus 177 ---~~~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~l---PvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~v 249 (364)
.+++...|...||+| +.||.+||++++..+-.. -.|.||.|||.|-.|..-...+.+-..+.|+..+.|.++|
T Consensus 395 ~D~~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar~v~aPIFHV 474 (1017)
T KOG0450 395 GDEEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVARVVNAPIFHV 474 (1017)
T ss_pred CCCCCCEEEEEEEECCHHHCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEE
T ss_conf 66135625789985451103674488861444577765697489997262121048642247987356898708975765
Q ss_pred HCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHH
Q ss_conf 00002336887542102455454655898315668876667876678999999989838937999999998789998999
Q gi|255764490|r 250 DGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDL 329 (364)
Q Consensus 250 DG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D~~~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~te~e~ 329 (364)
|++||+||..+.+-|-++....++.++|.++|||.+||.+-|-..+..+--.+..++..-.+.++.+.|+..|.++++++
T Consensus 475 NaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP~FTQPlMYk~I~k~~~~l~~Y~ekLl~egtvs~~ev 554 (1017)
T KOG0450 475 NADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEPMFTQPLMYKQIRKHKPVLQKYAEKLLSEGTVSQQEV 554 (1017)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHH
T ss_conf 58876999999999999998716670799888741487755675434637999987088589999999874285149999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999998479
Q gi|255764490|r 330 KEIEMNVRKIINNSVEFAQSDK 351 (364)
Q Consensus 330 ~~i~~~~~~~v~~a~~~A~~~p 351 (364)
+++.+++....+++++.++...
T Consensus 555 d~~~~k~~~I~eeafe~sKd~~ 576 (1017)
T KOG0450 555 DEEIKKYDNILEEAFERSKDYK 576 (1017)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999998644454
No 15
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.89 E-value=2.4e-23 Score=169.84 Aligned_cols=213 Identities=23% Similarity=0.310 Sum_probs=168.0
Q ss_pred CCCHHHHHHHHHHHCC------CCCEEEE-CCCCHHHHHH--HHHHHHHHHHHHHCCCCCC--CCCC-CCCCCCCCCC--
Q ss_conf 8987899999996238------9989994-3006899999--7421222234321012344--3455-6773211122--
Q gi|255764490|r 85 CIGQEAVIVGMKMSLT------EGDQMIT-AYREHGHILA--CGVDASKIMAELTGRQGGI--SKGK-GGSMHMFSTK-- 150 (364)
Q Consensus 85 ~~GqEa~~vg~~~al~------~~D~~~~-~yR~~~~~l~--~G~~~~~~~ae~~gk~~g~--~~Gr-~gs~H~~~~~-- 150 (364)
-.|-|+...++...++ -++.++. .||++.-.|+ .|.++..+|+|+-|+.... ..|- +---|++...
T Consensus 17 lEG~EslIp~l~~li~~a~~~gv~~iviGMaHRGRLNvL~nvl~Kp~~~iF~eF~g~~~~~~~~~~sGDVKYHlG~s~~~ 96 (265)
T cd02016 17 LEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPEDDEGSGDVKYHLGYSSDR 96 (265)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 56688999999999999987698679982566651889999864179999985279988963246667716378424578
Q ss_pred ---------CCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCCHH---H
Q ss_conf ---------1236766746676743254310011233-----4444331025665-43024567654432114011---1
Q gi|255764490|r 151 ---------NGFYGGHGIVGAQVSLGTGIAFANKYRR-----SDKICVVCFGDGA-ANQGQVYESFNIAALWNLNV---I 212 (364)
Q Consensus 151 ---------~~~~~~~~~vg~~~p~A~G~A~a~k~~~-----~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~lPv---i 212 (364)
....+.-|.+-.--|++.|.+.|.+... ++-+.+...||+| +.||.++|+|||+.+....+ |
T Consensus 97 ~~~~gk~v~lsL~~NPSHLEaVnPVv~G~~RAkQ~~~~~~~~~kvlpiliHGDAAfaGQGvv~Etl~ls~l~gy~~GGti 176 (265)
T cd02016 97 KTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTI 176 (265)
T ss_pred EECCCCEEEEEECCCCCCCEEECCEECCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEE
T ss_conf 62699889999758976416777774440565677644877663789999666111456589987666338998547669
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 02210343444443232148643577777631111210000233688754210245545465589831566887666787
Q gi|255764490|r 213 YVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDP 292 (364)
Q Consensus 213 fvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D~ 292 (364)
.+|.|||.+-.|+..+..+..-.++.|+.+++|.++|||.||++|..+++-|++|..+.++.++|++.|||.+||++.|.
T Consensus 177 HiivNNQIGFTT~p~~~Rss~Y~tDiaK~~~~Pi~HVNgddpeav~~a~~lA~~yR~~F~kDvvIDlvcYRr~GHNE~De 256 (265)
T cd02016 177 HIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRRHGHNELDE 256 (265)
T ss_pred EEEEECCEEECCCCHHHCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCC
T ss_conf 99980741002581340457640026888679889976899899999999999999986998799978734568787788
Q ss_pred CCCCC
Q ss_conf 66789
Q gi|255764490|r 293 ANYRT 297 (364)
Q Consensus 293 ~~YR~ 297 (364)
..+..
T Consensus 257 P~fTq 261 (265)
T cd02016 257 PSFTQ 261 (265)
T ss_pred CCCCC
T ss_conf 67768
No 16
>PRK05899 transketolase; Reviewed
Probab=99.88 E-value=2.7e-21 Score=156.61 Aligned_cols=194 Identities=21% Similarity=0.269 Sum_probs=139.7
Q ss_pred CE-EEE-CCCC---HHHHHHHHH--HHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89-994-3006---899999742--12222343210123443455677321112-2123676674667674325431001
Q gi|255764490|r 103 DQ-MIT-AYRE---HGHILACGV--DASKIMAELTGRQGGISKGKGGSMHMFST-KNGFYGGHGIVGAQVSLGTGIAFAN 174 (364)
Q Consensus 103 D~-~~~-~yR~---~~~~l~~G~--~~~~~~ae~~gk~~g~~~Gr~gs~H~~~~-~~~~~~~~~~vg~~~p~A~G~A~a~ 174 (364)
|. |+. -|-. .++.+..|. +.+++. . |-+.++.. +.|.-.. ..++...+|++|++++.|+|+|+|.
T Consensus 62 Dr~v~~~GH~~~~~Ya~~~l~G~~~~~~~l~-~-~r~~~s~~-----~ghpe~~~~~~v~~stG~lG~gis~a~G~A~a~ 134 (661)
T PRK05899 62 DRFVLSAGHGSMLLYSLLHLTGYDLSIEDLK-N-FRQLGSKT-----PGHPEYGHTPGVETTTGPLGQGLANAVGMALAE 134 (661)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCHHHHH-H-HCCCCCCC-----CCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHH
T ss_conf 8599978762569999999828999999999-8-52589999-----999986899986368886077899999999999
Q ss_pred CCCCC----------CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH-HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 12334----------4443310256654302456765443211401-110221034344444323214864357777763
Q gi|255764490|r 175 KYRRS----------DKICVVCFGDGAANQGQVYESFNIAALWNLN-VIYVIENNQYAMGTSVSRASAQTNFSKRGVSFN 243 (364)
Q Consensus 175 k~~~~----------~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lP-vifvvenN~~aist~~~~~~~~~~i~~ra~~~g 243 (364)
|+.+. ++-++|++|||+.+||..|||||+|+.++|. +|+|+.+|+.+|+.++..... .++.+|.+++|
T Consensus 135 ~~~~~~~~~~~~~~~~~~v~aviGDG~l~eG~a~EAln~a~~~~l~nLIvI~ndN~~sIdg~v~~~~~-~~l~~rf~a~G 213 (661)
T PRK05899 135 KLLAARFNRPGHDIVDHYTYVLLGDGCLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGDTSGWFS-EDTKKRFEAYG 213 (661)
T ss_pred HHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEECCCEEECCCCCCCCH-HHHHHHHHHCC
T ss_conf 99866528775566577499998206435678999998645046898899994797000664042105-98999999769
Q ss_pred HHHHHH-HCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC-CCCCC----CCCHHHHHHHHHH
Q ss_conf 111121-0000233688754210245545465589831566887666-78766----7899999998983
Q gi|255764490|r 244 IPGMQV-DGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSM-SDPAN----YRTREEINEMRSN 307 (364)
Q Consensus 244 i~~~~v-DG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~-~D~~~----YR~~~Ei~~~~~~ 307 (364)
|..+.| ||+|+.++++++++|.+. ..+|++|+++|.--+|... .++.. --+.+|++..+++
T Consensus 214 w~vi~v~DGhD~~~I~~Ai~~Ak~~---~~kPtvI~v~TiKG~G~p~~e~~~~~Hg~~L~~ee~~~~~~~ 280 (661)
T PRK05899 214 WHVIEVVDGHDVEAIDAAIEEAKAE---TDKPTLIIAKTIIGKGSPNKEGTHKVHGAPLGAEEIAAARKA 280 (661)
T ss_pred CCEEECCCCCCHHHHHHHHHHHHHC---CCCCEEEEEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHH
T ss_conf 8678437999999999999999864---699868999823667873234651332587551689999996
No 17
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.86 E-value=3.6e-21 Score=155.80 Aligned_cols=217 Identities=21% Similarity=0.249 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH-HHHHH--CCC-------CCEEEEC--CCCHHHH--H-HH
Q ss_conf 9999989999999999999978987772205898789999-99962--389-------9899943--0068999--9-97
Q gi|255764490|r 54 SAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIV-GMKMS--LTE-------GDQMITA--YREHGHI--L-AC 118 (364)
Q Consensus 54 ~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~v-g~~~a--l~~-------~D~~~~~--yR~~~~~--l-~~ 118 (364)
++-+.-..+|+-..++.....+| .++.|...--+.+ -.... +.| .|++..+ |-..+++ | -+
T Consensus 9 ~L~~~A~~iRr~~v~m~~~~~~G----H~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLSKGHaa~AlYa~Lae~ 84 (243)
T COG3959 9 ELERIAREIRRNIVRMLANAGSG----HVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHAAPALYATLAEK 84 (243)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCC----CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHC
T ss_conf 99999999999999986326788----75762109999999999872668788877777769983664138999999981
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 421222234321012344345567732111-2212367667466767432543100112334444331025665430245
Q gi|255764490|r 119 GVDASKIMAELTGRQGGISKGKGGSMHMFS-TKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQV 197 (364)
Q Consensus 119 G~~~~~~~ae~~gk~~g~~~Gr~gs~H~~~-~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f 197 (364)
|.-+.+-+. -|++.++. .++|.-. ...++...+|.+|+++++|+|+|++.|+++++.-|++.+|||...||.+
T Consensus 85 G~~p~eeL~-~~~~~~sr-----L~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~ 158 (243)
T COG3959 85 GYFPEEELE-TFRRIGSR-----LPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQV 158 (243)
T ss_pred CCCCHHHHH-HHCCCCCC-----CCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCH
T ss_conf 898889999-75168985-----889976578986562687655661078888888765289844999955754366527
Q ss_pred HHHHHHHHHCCCH-HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 6765443211401-110221034344444323214864357777763111121000023368875421024554546558
Q gi|255764490|r 198 YESFNIAALWNLN-VIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPII 276 (364)
Q Consensus 198 ~Ealn~A~~~~lP-vifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~l 276 (364)
|||+..|+.+||. +|.+|..|+..++.++++..+..++.++.++|||..++|||||+.++++++.++..- .++|.+
T Consensus 159 WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~---~~rP~~ 235 (243)
T COG3959 159 WEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGS---KGRPTV 235 (243)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCC---CCCCEE
T ss_conf 99999998705376799994587424776543268520078888438068997584799999999841135---899869
Q ss_pred EEECCCC
Q ss_conf 9831566
Q gi|255764490|r 277 IEMLTYR 283 (364)
Q Consensus 277 ie~~tyR 283 (364)
|.++|.+
T Consensus 236 IIa~Tvk 242 (243)
T COG3959 236 IIAKTVK 242 (243)
T ss_pred EEEECCC
T ss_conf 9973565
No 18
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.86 E-value=2.7e-21 Score=156.63 Aligned_cols=219 Identities=21% Similarity=0.283 Sum_probs=143.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCEEEEC--CCCHHHHHHH
Q ss_conf 76343888999999999899999999999999789877722058987899999996238-99899943--0068999997
Q gi|255764490|r 42 FEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLT-EGDQMITA--YREHGHILAC 118 (364)
Q Consensus 42 ~~~~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al~-~~D~~~~~--yR~~~~~l~~ 118 (364)
.++++|+.++|.++=.. +|.+=..+. .+.| |-.-++.|-=-+.+++-..++ |.|.++.. |-+-.|.+.-
T Consensus 14 ~dlk~l~~~~l~~la~~---iR~~~i~~v--~~~~---GH~g~~lg~~e~~~aL~~~f~~~rDr~v~s~GH~~Y~hk~Lt 85 (576)
T PRK05444 14 ADLRKLSLEELPQLADE---IREFLIDSV--SKTG---GHLGSNLGVVELTVALHYVFDTPKDRIIWDVGHQAYPHKILT 85 (576)
T ss_pred HHHHCCCHHHHHHHHHH---HHHHHHHHH--HHCC---CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHC
T ss_conf 99860999999999999---999999999--7658---988857479999999985269998848982750755668862
Q ss_pred HHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 421-22223432101234434556773211122-1236766746676743254310011233444433102566543024
Q gi|255764490|r 119 GVD-ASKIMAELTGRQGGISKGKGGSMHMFSTK-NGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQ 196 (364)
Q Consensus 119 G~~-~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~-~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~ 196 (364)
|-. -..-++++-|. .| |..-.+ ..-...+|+.|++++.|+|+|+|.|+++.+.-++|++|||+.+||.
T Consensus 86 G~~~~~~~~r~~~~l-~g---------~~~~~es~~d~~~~G~~g~gls~a~G~A~a~~l~~~~~~v~~~~GDG~l~eGi 155 (576)
T PRK05444 86 GRRDRFDTLRQKGGL-SG---------FPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGEDRKVVAVIGDGALTGGM 155 (576)
T ss_pred CCHHHHHHHHHCCCC-CC---------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHCCHH
T ss_conf 758776314514998-89---------99998788987787876217889999999998469995499998140103314
Q ss_pred HHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCE
Q ss_conf 567654432114011102210343444443232148643577777631111-2100002336887542102455454655
Q gi|255764490|r 197 VYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPI 275 (364)
Q Consensus 197 f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~ 275 (364)
.|||+|+|+.+++++|+++.||+++|+.++..... ..+.++|||.++ .|||||+.++.+++++|.+ ..+|+
T Consensus 156 s~EA~s~Ag~~~~~liii~~DN~isI~~~vg~~~~----~~~Fea~Gw~~i~~iDGhd~~~i~~al~~ak~----~~~P~ 227 (576)
T PRK05444 156 AFEALNNAGDLKSDLIVILNDNEMSISPNVGALSN----YTLFEELGFKYIGPIDGHDLDALVETLKNAKD----LKGPV 227 (576)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC----CHHHHHCCCEEECCCCCCCHHHHHHHHHHHHH----CCCCE
T ss_conf 89999755533887699997798200788654331----01789809948686589899999999998886----69998
Q ss_pred EEEECCCCCCC
Q ss_conf 89831566887
Q gi|255764490|r 276 IIEMLTYRYRG 286 (364)
Q Consensus 276 lie~~tyR~~g 286 (364)
+|+++|..-+|
T Consensus 228 lI~~kT~~G~G 238 (576)
T PRK05444 228 LLHVVTKKGKG 238 (576)
T ss_pred EEEEEEECCCC
T ss_conf 99999705667
No 19
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.85 E-value=4.1e-21 Score=155.47 Aligned_cols=227 Identities=16% Similarity=0.225 Sum_probs=145.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCEEEE--CCCCHHHHHHH
Q ss_conf 76343888999999999899999999999999789877722058987899999996238-9989994--30068999997
Q gi|255764490|r 42 FEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLT-EGDQMIT--AYREHGHILAC 118 (364)
Q Consensus 42 ~~~~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al~-~~D~~~~--~yR~~~~~l~~ 118 (364)
.++.+|+.++|.++=. .+|.+=..+.. ..| |=.-++.|---+.+++-..+. |.|.+.. -|-+-+|.+.-
T Consensus 10 ~dlk~l~~~~L~~la~---~iR~~~i~~v~--~~~---GH~g~~lg~~el~~alh~~f~~p~Dr~v~s~GH~sY~~~~Lt 81 (581)
T PRK12315 10 KDIKKLSLEELEQLAT---EIRTALLEKDS--AHG---GHVGPNLGVVELTIALHYVFNSPKDKIVWDVSHQSYPHKMLT 81 (581)
T ss_pred HHHHHCCHHHHHHHHH---HHHHHHHHHHH--HCC---CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHH
T ss_conf 9986299999999999---99999999974--438---867857689999999998528988874773761789999995
Q ss_pred HHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 4212-222343210123443455677321112212367667466767432543100112334444331025665430245
Q gi|255764490|r 119 GVDA-SKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQV 197 (364)
Q Consensus 119 G~~~-~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f 197 (364)
|... ..-+.+. .|. .|.-+..-.+... ..+|++|++++.|+|+|+|.++++.+.-++|++|||+.+||..
T Consensus 82 gr~~~~~~~~~~----~~l----~g~~~~~e~~~d~-~~tG~~g~gls~avGmA~A~~~~~~~~~v~~v~GDG~l~eG~~ 152 (581)
T PRK12315 82 GRKEAFLDPDHY----DDV----TGYTNPEESEHDF-FTVGHTSTSIALATGMAKARDLKGEKENIIAVIGDGSLSGGLA 152 (581)
T ss_pred CCCCCCCCCHHC----CCC----CCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHH
T ss_conf 660116861212----888----8989898888987-7877637899999999999997299984899985513440167
Q ss_pred HHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCC---------CCCCCHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHCCC
Q ss_conf 67654432114011102210343444443232---------14864357777763111121-000023368875421024
Q gi|255764490|r 198 YESFNIAALWNLNVIYVIENNQYAMGTSVSRA---------SAQTNFSKRGVSFNIPGMQV-DGMDIRAVKATMDKAVAY 267 (364)
Q Consensus 198 ~Ealn~A~~~~lPvifvvenN~~aist~~~~~---------~~~~~i~~ra~~~gi~~~~v-DG~D~~~v~~~~~~a~~~ 267 (364)
|||+|+|+.++.++|.++.||+++|+.++... +.......+.++|||.++.| ||+|+.++.+++++|.+
T Consensus 153 ~EA~~~Ag~~~~nlivi~ddN~isI~~~~~~~~~~~~~~~~~~~~~~~~~fe~~G~~~~~v~DGhd~~~i~~al~~ak~- 231 (581)
T PRK12315 153 FEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDLESLIELFKEVKD- 231 (581)
T ss_pred HHHHHHHCCCCCCEEEEEECCCEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHH-
T ss_conf 9998763458985599997688023587307777778877503755010699849868825799999999999999863-
Q ss_pred CCCCCCCEEEEECCCCCCCCCC
Q ss_conf 5545465589831566887666
Q gi|255764490|r 268 CRAHKGPIIIEMLTYRYRGHSM 289 (364)
Q Consensus 268 ~r~~~gP~lie~~tyR~~gHs~ 289 (364)
..+|++|+++|..-.|.+.
T Consensus 232 ---~~~P~~I~v~T~kG~G~~~ 250 (581)
T PRK12315 232 ---IDHPIVLHIHTLKGKGYKP 250 (581)
T ss_pred ---CCCCEEEEEEECCCCCCCC
T ss_conf ---6999799999678636661
No 20
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.84 E-value=3.1e-22 Score=162.67 Aligned_cols=124 Identities=23% Similarity=0.388 Sum_probs=108.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 36766746676743254310011233444433102566543024567654432114011102210343444443232148
Q gi|255764490|r 153 FYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQ 232 (364)
Q Consensus 153 ~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~ 232 (364)
+...+|++|.++|+|+|+|+|.|+++.++-++|++|||.++||.+|||+++|+.+++++++++.||+++|+.+++
T Consensus 70 ~~~stGsLG~Gls~a~G~Ala~k~~~~~~~v~~l~GDGEl~EG~~wEA~~~A~~~~~nli~iid~N~~~i~~~~~----- 144 (195)
T cd02007 70 DAFGTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVG----- 144 (195)
T ss_pred CEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEECCCCC-----
T ss_conf 845886468899999999999956799984999977811401899999999765189869999679876148866-----
Q ss_pred CCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 643577777631111-210000233688754210245545465589831566887
Q gi|255764490|r 233 TNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRG 286 (364)
Q Consensus 233 ~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~g 286 (364)
+...+.++|||..+ .|||+|+.++.++++++. +.++|++|.++|..-.|
T Consensus 145 -~~~~~f~afGw~~v~~vDGhd~~~i~~al~~a~----~~~~P~~Iia~TikGkG 194 (195)
T cd02007 145 -TPGNLFEELGFRYIGPVDGHNIEALIKVLKEVK----DLKGPVLLHVVTKKGKG 194 (195)
T ss_pred -CCCCHHHHCCCCEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEEECCCC
T ss_conf -642368774886778607899999999999986----28999899999641508
No 21
>pfam00456 Transketolase_N Transketolase, thiamine diphosphate binding domain. This family includes transketolase enzymes EC:2.2.1.1. and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes utilize thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.
Probab=99.84 E-value=2.2e-20 Score=150.81 Aligned_cols=154 Identities=21% Similarity=0.294 Sum_probs=126.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHCC
Q ss_conf 212367667466767432543100112334----------444331025665430245676544321140-111022103
Q gi|255764490|r 150 KNGFYGGHGIVGAQVSLGTGIAFANKYRRS----------DKICVVCFGDGAANQGQVYESFNIAALWNL-NVIYVIENN 218 (364)
Q Consensus 150 ~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~----------~~v~v~~~GDGa~~eG~f~Ealn~A~~~~l-PvifvvenN 218 (364)
..++-..+|++|.+++.|+|+|+|.|+.+. +.-++|++|||.++||..|||+.+|+.++| .+|+++.+|
T Consensus 104 ~~Gve~tTG~LGqGl~~avG~Ala~k~l~~~~n~~~~~~~d~~vy~l~GDGel~EG~~~EA~~~Ag~~~L~nLi~i~D~N 183 (333)
T pfam00456 104 TAGVEVTTGPLGQGIANAVGMAIAEANLAATYNRPGFDIVDHYTYVFLGDGCLMEGVSSEASSLAGHLKLGNLIAFYDDN 183 (333)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 99824068774222567887999999987663667666557449998464312539899999999871789789997457
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC-CCC----
Q ss_conf 4344444323214864357777763111121-0000233688754210245545465589831566887666-787----
Q gi|255764490|r 219 QYAMGTSVSRASAQTNFSKRGVSFNIPGMQV-DGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSM-SDP---- 292 (364)
Q Consensus 219 ~~aist~~~~~~~~~~i~~ra~~~gi~~~~v-DG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~-~D~---- 292 (364)
+..|+.+++.... .++.+|.++|||..+.| ||+|+.++.+++.+|... ..+|++|.++|.--.|-.. .+.
T Consensus 184 ~iqidG~t~~~~~-ed~~~rf~a~GW~v~~v~DGhD~~~I~~Ai~~Ak~~---~~kPt~Ii~~TiiGkG~p~~eg~~~~H 259 (333)
T pfam00456 184 RISIDGETEISFT-EDTAKRFEAYGWHVIEVEDGHDVEAIAAAIEEAKAE---KDKPTLIICRTVIGYGSPNKQGTHDVH 259 (333)
T ss_pred CEECCCCCCCCCC-CHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHC---CCCCEEEEEEEEEECCCCCCCCCCCCC
T ss_conf 5421798453555-109999876490799946999999999999999865---899816986421515884446787656
Q ss_pred CCCCCHHHHHHHHHH
Q ss_conf 667899999998983
Q gi|255764490|r 293 ANYRTREEINEMRSN 307 (364)
Q Consensus 293 ~~YR~~~Ei~~~~~~ 307 (364)
..=-..+|++..|++
T Consensus 260 G~plg~ee~~~~k~~ 274 (333)
T pfam00456 260 GAPLGADEVAALKEK 274 (333)
T ss_pred CCCCCHHHHHHHHHH
T ss_conf 888898999999998
No 22
>PRK12753 transketolase; Reviewed
Probab=99.83 E-value=5.9e-19 Score=141.66 Aligned_cols=232 Identities=19% Similarity=0.204 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH-HHHC--CCC-------CEEE-E-CCCC---HHHHHHHHH--HHH
Q ss_conf 99999999999997898777220589878999999-9623--899-------8999-4-3006---899999742--122
Q gi|255764490|r 61 LIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGM-KMSL--TEG-------DQMI-T-AYRE---HGHILACGV--DAS 123 (364)
Q Consensus 61 ~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~-~~al--~~~-------D~~~-~-~yR~---~~~~l~~G~--~~~ 123 (364)
.+|.+-..+.+--..|-.++ +.|--.+...+ ...| +|+ |.++ + -|-+ -+++...|. +..
T Consensus 9 ~iR~l~~~~v~~a~sGHpg~----~l~~a~i~~~L~~~~~~~~p~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~~~~~ 84 (662)
T PRK12753 9 AIRALSMDAVQKANSGHPGA----PMGMADIAEVLWRDFLKHNPTNPTWYDRDRFILSNGHASMLLYSLLHLTGYDLPIE 84 (662)
T ss_pred HHHHHHHHHHHHCCCCCCCH----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCHH
T ss_conf 99999999999738998521----26799999999998612698895998888699867540299999999818999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCCCCCCCCCC
Q ss_conf 223432101234434556773211-12212367667466767432543100112334----------4443310256654
Q gi|255764490|r 124 KIMAELTGRQGGISKGKGGSMHMF-STKNGFYGGHGIVGAQVSLGTGIAFANKYRRS----------DKICVVCFGDGAA 192 (364)
Q Consensus 124 ~~~ae~~gk~~g~~~Gr~gs~H~~-~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~----------~~v~v~~~GDGa~ 192 (364)
+ +.++.. .++... .|.- ....++-..+|++|+++..|+|+|+|.|+.+. +.-++|++|||+.
T Consensus 85 ~-l~~fr~-~~s~~~-----Ghpe~~~~pgve~~tG~lGqGls~a~GmA~a~~~l~~~~n~~~~~~~d~~vy~l~GDG~l 157 (662)
T PRK12753 85 E-LKNFRQ-LHSKTP-----GHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPDHEIVDHYTYVFMGDGCL 157 (662)
T ss_pred H-HHHHHC-CCCCCC-----CCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC
T ss_conf 9-997506-799999-----999879999844488871888999999999999976652778765547549999755400
Q ss_pred CCHHHHHHHHHHHHCCCH-HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCC
Q ss_conf 302456765443211401-1102210343444443232148643577777631111-21000023368875421024554
Q gi|255764490|r 193 NQGQVYESFNIAALWNLN-VIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRA 270 (364)
Q Consensus 193 ~eG~f~Ealn~A~~~~lP-vifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~ 270 (364)
+||..|||+|+|+.++|. +|+++.+|+.+|+.+++.... .++.+|.++|||..+ .|||+|+.++.+++.+|...
T Consensus 158 ~eG~~~EA~~~Ag~~~L~nLivi~D~N~isidg~~~~~~~-~~~~~rf~a~gw~vi~~idGhd~~~i~~Al~~A~~~--- 233 (662)
T PRK12753 158 MEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGEVEGWFT-DDTAKRFEAYGWHVIHDIDGHDPQAIKEAILEAQSV--- 233 (662)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEC-HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH---
T ss_conf 0479999999887608886899980898846777210013-668999996497699814887779999999998872---
Q ss_pred CCCCEEEEECCCCCCCCC-CCCC----CCCCCHHHHHHHHHH
Q ss_conf 546558983156688766-6787----667899999998983
Q gi|255764490|r 271 HKGPIIIEMLTYRYRGHS-MSDP----ANYRTREEINEMRSN 307 (364)
Q Consensus 271 ~~gP~lie~~tyR~~gHs-~~D~----~~YR~~~Ei~~~~~~ 307 (364)
..+|++|.++|.--+|-. ..+. ..--..+|++..+++
T Consensus 234 ~~kPtlI~~kT~IG~GsP~~eG~~~~HG~PLg~eei~~~k~~ 275 (662)
T PRK12753 234 KDKPSLIICRTIIGFGSPNKAGKEESHGAPLGEEEVALTRQK 275 (662)
T ss_pred CCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 699859998543455771320244336776647899999987
No 23
>PRK12754 transketolase; Reviewed
Probab=99.82 E-value=1.1e-18 Score=139.80 Aligned_cols=195 Identities=17% Similarity=0.189 Sum_probs=136.1
Q ss_pred CEEEE--CCCC---HHHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89994--3006---899999742-122223432101234434556773211-1221236766746676743254310011
Q gi|255764490|r 103 DQMIT--AYRE---HGHILACGV-DASKIMAELTGRQGGISKGKGGSMHMF-STKNGFYGGHGIVGAQVSLGTGIAFANK 175 (364)
Q Consensus 103 D~~~~--~yR~---~~~~l~~G~-~~~~~~ae~~gk~~g~~~Gr~gs~H~~-~~~~~~~~~~~~vg~~~p~A~G~A~a~k 175 (364)
|.+.. -|-+ -.++...|. ...+-+.++-+ -++.. +-|.- ....++-..+|++|+++..|+|+|+|.|
T Consensus 58 Dr~v~s~GH~s~~~Y~~l~l~G~~~~~~~l~~fr~-~~s~~-----~Ghpe~~~~~gve~~tG~lGqgis~a~G~A~a~~ 131 (663)
T PRK12754 58 DRFVLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQ-LHSKT-----PGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEK 131 (663)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHCC-CCCCC-----CCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 84998675302799999998188997999997268-99999-----9999879999945587880889999999999999
Q ss_pred CCCC----------CCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 2334----------444331025665430245676544321140-11102210343444443232148643577777631
Q gi|255764490|r 176 YRRS----------DKICVVCFGDGAANQGQVYESFNIAALWNL-NVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNI 244 (364)
Q Consensus 176 ~~~~----------~~v~v~~~GDGa~~eG~f~Ealn~A~~~~l-PvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi 244 (364)
+.+. |.-++|++|||+.++|..|||+|+|+.++| ++|.++.||+.+|+.+++.... .++..|.++|||
T Consensus 132 ~l~~~~~~~~~~~~d~~v~~viGDG~l~eG~a~EAl~~Ag~~~l~nLivi~ddN~~sI~g~v~~~~s-ed~~~RfeA~GW 210 (663)
T PRK12754 132 TLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFT-DDTAMRFEAYGW 210 (663)
T ss_pred HHHHHHCCCCCCCCCCEEEEEECCCCHHCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHH-HHHHHHHHHCCC
T ss_conf 9765527687655476189997545010589999999745167787899987887755765444520-458999986184
Q ss_pred HHHH-HHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC-CC----CCCCCCHHHHHHHHHH
Q ss_conf 1112-10000233688754210245545465589831566887666-78----7667899999998983
Q gi|255764490|r 245 PGMQ-VDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSM-SD----PANYRTREEINEMRSN 307 (364)
Q Consensus 245 ~~~~-vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~-~D----~~~YR~~~Ei~~~~~~ 307 (364)
..++ |||+|+.++.+++.+|... ..+|++|.++|.--.|... .+ +..--..+|++..|++
T Consensus 211 ~vi~~idGhd~~~I~~Al~~A~~~---~~kPtlI~~kTviG~G~p~~~g~~~~HG~pl~~~ei~~~k~~ 276 (663)
T PRK12754 211 HVIRGIDGHDADSIKRAVEEARAV---TDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQ 276 (663)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHC---CCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHH
T ss_conf 067445877899999999999860---699848886411255886535551212766667789999998
No 24
>TIGR00232 tktlase_bact transketolase; InterPro: IPR005478 Transketolase (EC 2.2.1.1) (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. This group includes two proteins from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. ; GO: 0004802 transketolase activity.
Probab=99.81 E-value=1.3e-19 Score=145.78 Aligned_cols=218 Identities=22% Similarity=0.345 Sum_probs=152.3
Q ss_pred HHH--HHHH--HHHHHCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCC
Q ss_conf 421--2222--343210123443455677321-11221236766746676743254310011233----------44443
Q gi|255764490|r 119 GVD--ASKI--MAELTGRQGGISKGKGGSMHM-FSTKNGFYGGHGIVGAQVSLGTGIAFANKYRR----------SDKIC 183 (364)
Q Consensus 119 G~~--~~~~--~ae~~gk~~g~~~Gr~gs~H~-~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~----------~~~v~ 183 (364)
|.| +++| +.|+-.|.-| |. +....++--++||+|+++.-|||+|+|.+... -|.-|
T Consensus 75 GyDls~EdLk~FRQ~~s~TPG---------HPE~~~~~Gve~TTGPLGQGianAVGmA~A~~~LAa~fn~~~~~~~DHyT 145 (675)
T TIGR00232 75 GYDLSIEDLKQFRQLHSKTPG---------HPEFGHTAGVEATTGPLGQGIANAVGMAIAERTLAATFNKPGFEIVDHYT 145 (675)
T ss_pred CCCCCHHHHHCCCCCCCCCCC---------CCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECEE
T ss_conf 036666888237322301788---------88777888702311873013577999999999999970879694431207
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCHHHH-HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HC-CHHHHHHHH
Q ss_conf 310256654302456765443211401110-221034344444323214864357777763111121-00-002336887
Q gi|255764490|r 184 VVCFGDGAANQGQVYESFNIAALWNLNVIY-VIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQV-DG-MDIRAVKAT 260 (364)
Q Consensus 184 v~~~GDGa~~eG~f~Ealn~A~~~~lPvif-vvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~v-DG-~D~~~v~~~ 260 (364)
+|++|||+..||.=||+..+|+.|+|-=|+ +-.+|+.+|...++..+.. ++.+|.++|||..+++ || +|+.++.+|
T Consensus 146 Yv~~GDGcLqEGiS~E~asLAG~l~LgkLI~lYDsN~IsiDG~~~~~F~E-dv~~RFeA~gW~Vl~~~DG~~D~~~I~~A 224 (675)
T TIGR00232 146 YVIVGDGCLQEGISYEAASLAGHLKLGKLIVLYDSNRISIDGAVDGSFSE-DVKKRFEAYGWEVLEVEDGNHDLEAIAAA 224 (675)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCEEECCCCCHHHHH-HHHHHHHHCCCEEEEECCCCCCHHHHHHH
T ss_conf 89973775566378999988766322866899736835643430100100-14534410585585405745307999999
Q ss_pred HHHHCCCCCCCCCCEEEEECCCCCCCC-CCCC----CCCCCCHHHHHHHHHHC--CH---------HH-HHHHHHHHCCC
Q ss_conf 542102455454655898315668876-6678----76678999999989838--93---------79-99999998789
Q gi|255764490|r 261 MDKAVAYCRAHKGPIIIEMLTYRYRGH-SMSD----PANYRTREEINEMRSNH--DP---------IE-QVRKRLLHNKW 323 (364)
Q Consensus 261 ~~~a~~~~r~~~gP~lie~~tyR~~gH-s~~D----~~~YR~~~Ei~~~~~~~--DP---------I~-~~~~~L~~~g~ 323 (364)
+.+|.. ...+|+||+|+|.=-+|- ...| +..=-.++|++..|++. +| |. .|++..++.|.
T Consensus 225 i~~Ak~---~~dKPTlI~v~T~IGfGsp~~~g~~~~HGapL~~~~~~~~~~~~~~~~~~sF~~P~evyd~~~~~v~e~G~ 301 (675)
T TIGR00232 225 IEEAKA---SKDKPTLIEVKTTIGFGSPNKEGTEGVHGAPLGKEEVKLTKKNLGWNYNPSFEVPQEVYDHFKKTVKERGA 301 (675)
T ss_pred HHHHHH---CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 999873---07897168998775036877788866788898868999999971888777753765688899999998657
Q ss_pred CCHHHHHHHHHHHHHH-HHHHHHHHHH
Q ss_conf 9989999999999999-9999999984
Q gi|255764490|r 324 ASEGDLKEIEMNVRKI-INNSVEFAQS 349 (364)
Q Consensus 324 ~te~e~~~i~~~~~~~-v~~a~~~A~~ 349 (364)
--+++.++.-.+.++. .+.+.++...
T Consensus 302 ~~~~~Wn~~f~~yk~~yP~~~~~f~~~ 328 (675)
T TIGR00232 302 KAEQEWNELFAKYKKKYPELAAEFERR 328 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 799999999999988617899999998
No 25
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.81 E-value=1.1e-19 Score=146.45 Aligned_cols=230 Identities=20% Similarity=0.289 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH-HHHCC--C-------CCEEEECCCCHHHHHH--------HHHH
Q ss_conf 999999999999997898777220589878999999-96238--9-------9899943006899999--------7421
Q gi|255764490|r 60 LLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGM-KMSLT--E-------GDQMITAYREHGHILA--------CGVD 121 (364)
Q Consensus 60 ~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~-~~al~--~-------~D~~~~~yR~~~~~l~--------~G~~ 121 (364)
..||.+-..+.+--..|-- | ...|---++.-+ ...|+ | .|.+..+. +||-+|. -.++
T Consensus 11 naiR~Ls~davqkAnSGHP-G---~pmG~A~ia~~L~~~~l~~nP~nP~W~nRDRFVLSa-GHgSmllYsllhl~Gy~ls 85 (663)
T COG0021 11 NAIRFLSMDAVQKANSGHP-G---APMGAADIAYVLWTRFLKHNPDNPKWINRDRFVLSA-GHGSMLLYSLLHLTGYDLS 85 (663)
T ss_pred HHHHHHHHHHHHHCCCCCC-C---CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECC-CCHHHHHHHHHHHCCCCCC
T ss_conf 9999999999975138989-8---775488999999998741799999977876278607-7405999999998068887
Q ss_pred HHHH--HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCCCCCCC
Q ss_conf 2222--343210123443455677321112212367667466767432543100112334----------4443310256
Q gi|255764490|r 122 ASKI--MAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRS----------DKICVVCFGD 189 (364)
Q Consensus 122 ~~~~--~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~----------~~v~v~~~GD 189 (364)
++++ |+|+-.|.-|..- +....++-..+||+|+++..|||+|+|.|+... |.-++|++||
T Consensus 86 ~edLk~FRQ~~SkTpGHPE--------~~~t~gVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GD 157 (663)
T COG0021 86 LEDLKNFRQLGSKTPGHPE--------YGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGD 157 (663)
T ss_pred HHHHHHHCCCCCCCCCCCC--------CCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC
T ss_conf 9999850457899999987--------68989857156763015888999999999998761778886434328999747
Q ss_pred CCCCCHHHHHHHHHHHHCCCH-HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCC
Q ss_conf 654302456765443211401-1102210343444443232148643577777631111-21000023368875421024
Q gi|255764490|r 190 GAANQGQVYESFNIAALWNLN-VIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAY 267 (364)
Q Consensus 190 Ga~~eG~f~Ealn~A~~~~lP-vifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~ 267 (364)
|+..||..|||+.+|+.++|. +|.+..+|+++|..+++..+. .++.+|.++|||..+ .+||+|+.++.+++.+|+..
T Consensus 158 GclmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f~-ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~ 236 (663)
T COG0021 158 GCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSFT-EDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKAS 236 (663)
T ss_pred CHHHCCCHHHHHHHHHHCCCCCEEEEEECCCCEECCCCCCCCC-HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 3575161899998873447786899993798423267555553-669999985498698601888999999999999746
Q ss_pred CCCCCCCEEEEECCCCCCCCCC-CCCC----CCCCHHHHHHHHH
Q ss_conf 5545465589831566887666-7876----6789999999898
Q gi|255764490|r 268 CRAHKGPIIIEMLTYRYRGHSM-SDPA----NYRTREEINEMRS 306 (364)
Q Consensus 268 ~r~~~gP~lie~~tyR~~gHs~-~D~~----~YR~~~Ei~~~~~ 306 (364)
..+|++|+|+|.=-.|-.. .+.. .=--++|++..|+
T Consensus 237 ---~dkPtlI~~kTiIG~Gsp~kegt~~~HGapLg~~ev~~~k~ 277 (663)
T COG0021 237 ---TDKPTLIIVKTIIGKGSPNKEGTHKVHGAPLGEEEVAAAKK 277 (663)
T ss_pred ---CCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf ---79973899986640588876887654578888799999999
No 26
>PTZ00089 transketolase; Provisional
Probab=99.81 E-value=1.6e-19 Score=145.29 Aligned_cols=231 Identities=18% Similarity=0.230 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH-HHHCC--CC-------CEEEECCCCHHH---H----H-HHHHH
Q ss_conf 999999999999997898777220589878999999-96238--99-------899943006899---9----9-97421
Q gi|255764490|r 60 LLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGM-KMSLT--EG-------DQMITAYREHGH---I----L-ACGVD 121 (364)
Q Consensus 60 ~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~-~~al~--~~-------D~~~~~yR~~~~---~----l-~~G~~ 121 (364)
-.+|.+-..+.+-.+.|-.++ +.|---+.+.+ ...|+ |. |.++.+. +|+. + | ..+++
T Consensus 11 ~~ir~l~~d~v~~a~sGHpG~----~l~~a~i~~~L~~~~l~~~p~~p~w~~RDrfvlS~-GH~s~~lY~~l~l~g~~~~ 85 (670)
T PTZ00089 11 NEIRMLSAELPLEAKSGHQGA----PIGCAPIAHILWAYVMNYYNEDTKWINRDRFILSN-GHASALLYTMLYLTEQGLS 85 (670)
T ss_pred HHHHHHHHHHHHHCCCCCCCH----HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECC-CCHHHHHHHHHHHHCCCCC
T ss_conf 999999999999718999861----36799999999998603398894999998699755-1277999999998159999
Q ss_pred HHHH--HHHHHCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCCCCCC
Q ss_conf 2222--343210123443455677321-112212367667466767432543100112334----------444331025
Q gi|255764490|r 122 ASKI--MAELTGRQGGISKGKGGSMHM-FSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRS----------DKICVVCFG 188 (364)
Q Consensus 122 ~~~~--~ae~~gk~~g~~~Gr~gs~H~-~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~----------~~v~v~~~G 188 (364)
++++ +.++-++.-| |. .....++-..+|++|++++.|+|+|+|.|.... |.-++|++|
T Consensus 86 ~e~l~~fr~~~s~~~g---------Hpe~~~~~gve~ttG~LGqG~~~avGmAla~~~l~~~~~~~~~~i~d~~vy~l~G 156 (670)
T PTZ00089 86 MEDLKNFRQFESLTPG---------HPEKHITKGVEVTTGPLGQGASNAVGMAIAAHNLADKYNTEEFKIFDNYVYAICG 156 (670)
T ss_pred HHHHHHHCCCCCCCCC---------CCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC
T ss_conf 9999974547999999---------9999999880258887187899999999999998756187766654633999977
Q ss_pred CCCCCCHHHHHHHHHHHHCCCH-HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HCC-HHHHHHHHHHHHC
Q ss_conf 6654302456765443211401-110221034344444323214864357777763111121-000-0233688754210
Q gi|255764490|r 189 DGAANQGQVYESFNIAALWNLN-VIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQV-DGM-DIRAVKATMDKAV 265 (364)
Q Consensus 189 DGa~~eG~f~Ealn~A~~~~lP-vifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~v-DG~-D~~~v~~~~~~a~ 265 (364)
||..+||..|||+++|+.++|. +|.++.+|+..|+.+++.... .++.+|.++|||..++| ||+ |+.++.+++.+|.
T Consensus 157 DG~l~EG~~~EA~~~Ag~~~L~nLi~i~D~N~i~idg~~~~~~~-~d~~~r~~a~gW~v~~v~~g~~d~~~i~~ai~~Ak 235 (670)
T PTZ00089 157 DGCMQEGVFCEAASLAGHLGLGRLILLYDDNKITIDGNTDLSFT-EDIEKKFEALKWEVRKVEDGNKDFAGILHEIEEAK 235 (670)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC-HHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHH
T ss_conf 75434589999999864628998899991772114688543656-65999999807713433667779999999999998
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCC----CCCCCHHHHHHHHHHC
Q ss_conf 245545465589831566887666787----6678999999989838
Q gi|255764490|r 266 AYCRAHKGPIIIEMLTYRYRGHSMSDP----ANYRTREEINEMRSNH 308 (364)
Q Consensus 266 ~~~r~~~gP~lie~~tyR~~gHs~~D~----~~YR~~~Ei~~~~~~~ 308 (364)
.. ..+|++|.++|.--+|-...+. ..--.++|++..|+..
T Consensus 236 ~~---~~kPtlI~~~T~iG~Gs~~eGt~~~HG~pLg~eei~~~K~~l 279 (670)
T PTZ00089 236 KN---LKQPSLIIVQTACGFGTKVEGTCKSHGLALKDEDLKKAKEFF 279 (670)
T ss_pred HC---CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 55---899848996422246557678755358877769999999973
No 27
>KOG0523 consensus
Probab=99.75 E-value=5.9e-18 Score=135.25 Aligned_cols=213 Identities=20% Similarity=0.279 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHHHC--CCC-------CEEEEC--CCC---HHHHHHHHHHH
Q ss_conf 9899999999999999789877722058987-89999999623--899-------899943--006---89999974212
Q gi|255764490|r 58 LMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQ-EAVIVGMKMSL--TEG-------DQMITA--YRE---HGHILACGVDA 122 (364)
Q Consensus 58 ~M~~~R~~e~~~~~l~~qg~i~g~~~~~~Gq-Ea~~vg~~~al--~~~-------D~~~~~--yR~---~~~~l~~G~~~ 122 (364)
.|.++|..+.++.+--+.|-.... .|- |...+---..+ ++. |.+... |-+ -++..-.|.+.
T Consensus 13 ~~n~lri~si~~~~~a~sghp~s~----~s~A~~~~vlf~~~m~~~~~~p~~~n~Drfvls~GHa~~llYa~~~l~G~~~ 88 (632)
T KOG0523 13 AVNNLRILSIDATSAAKSGHPGSP----LSLAPIMHVLFFEVMRYNPADPYWFNRDRFVLSNGHACPLLYAHWHLAGYDR 88 (632)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCC----CCCCHHHHHHHHHHEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 764320566887776426999876----3201145544254323256786777876178765643137889999866574
Q ss_pred HH-H--HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCHHHH
Q ss_conf 22-2--343210123443455677321112212367667466767432543100112334-4443310256654302456
Q gi|255764490|r 123 SK-I--MAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRS-DKICVVCFGDGAANQGQVY 198 (364)
Q Consensus 123 ~~-~--~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~-~~v~v~~~GDGa~~eG~f~ 198 (364)
.+ + |+|+-++..|....+ ..++--.+|++|+++..|+|+|++.|+.++ ++-++|++|||+.+||..|
T Consensus 89 ~edl~~~Rq~~s~t~ghp~~~---------~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~ 159 (632)
T KOG0523 89 EEDLKNFRQIGSDTPGHPEPE---------LPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVW 159 (632)
T ss_pred HHHHHHHHHHCCCCCCCCCCC---------CCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHH
T ss_conf 888877775178899988666---------89834213776315777778998887641244608999768500144188
Q ss_pred HHHHHHHHCCCHHHH-HHHCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 765443211401110-221034344444323214864357-777763111121000023368875421024554546558
Q gi|255764490|r 199 ESFNIAALWNLNVIY-VIENNQYAMGTSVSRASAQTNFSK-RGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPII 276 (364)
Q Consensus 199 Ealn~A~~~~lPvif-vvenN~~aist~~~~~~~~~~i~~-ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~l 276 (364)
||+++|+.++|..|. +..||+.+|+++++..+.. ++++ |.++|||....|||.|+.++.+++.+|.- ...+|+.
T Consensus 160 Ea~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~-dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~---~k~kpt~ 235 (632)
T KOG0523 160 EAMSLAGHLKLDNLVAIYDNNKISIDGATSLGFDE-DVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKS---VKGKPTA 235 (632)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCC-CHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHH---CCCCCEE
T ss_conf 88766402254878999726644578986557674-2788888874855798748588999999865542---2688503
Q ss_pred EEECCCCCCCC
Q ss_conf 98315668876
Q gi|255764490|r 277 IEMLTYRYRGH 287 (364)
Q Consensus 277 ie~~tyR~~gH 287 (364)
|-++|+--+|-
T Consensus 236 i~~~t~~g~G~ 246 (632)
T KOG0523 236 IKATTFIGRGS 246 (632)
T ss_pred EEEEEEEECCC
T ss_conf 55455540475
No 28
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.64 E-value=1.6e-15 Score=119.66 Aligned_cols=231 Identities=22% Similarity=0.368 Sum_probs=145.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC-CCCEEEE--CCCCHHHHHHHH
Q ss_conf 6343888999999999899999999999999789877722058987899999996238-9989994--300689999974
Q gi|255764490|r 43 EVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLT-EGDQMIT--AYREHGHILACG 119 (364)
Q Consensus 43 ~~~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al~-~~D~~~~--~yR~~~~~l~~G 119 (364)
++..||.++|.++=.. +| +.+++ .-.+-+|-.-+..|-=-.-+++-..++ |.|.+.- .|-.-.|-|.-|
T Consensus 13 dLk~ls~~eL~~La~E---iR---~~li~--~vS~~GGHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKiLTG 84 (627)
T COG1154 13 DLKKLSIEELPQLADE---IR---EFLLE--VVSATGGHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKILTG 84 (627)
T ss_pred HHHHCCHHHHHHHHHH---HH---HHHHH--HHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHCC
T ss_conf 9864799999999999---99---99999--8622788647786700344777887179878767756755530677618
Q ss_pred HHHHHHHHHHHCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 2122223432101234434--55677321112212367667466767432543100112334444331025665430245
Q gi|255764490|r 120 VDASKIMAELTGRQGGISK--GKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQV 197 (364)
Q Consensus 120 ~~~~~~~ae~~gk~~g~~~--Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f 197 (364)
-. +-|..+. +.+|.|+ -|.-|- .-+++ +|.-+++++.|.|+|.|..++++++-+||.+||||.+-|..
T Consensus 85 R~--e~f~tlR-q~~GlsGf~~r~ESe------~D~f~-~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA 154 (627)
T COG1154 85 RR--EQFDTLR-QKDGLSGFPKREESE------HDWFG-VGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMA 154 (627)
T ss_pred CH--HHCCHHH-HCCCCCCCCCCCCCC------CCCCC-CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHH
T ss_conf 65--5323144-329978999965677------76635-57458789887668998874299883799977763300179
Q ss_pred HHHHHHHH-HCCCHHHHHHHCCCCCCCCCCCCCCC-------CC-------C--------------HHHH----------
Q ss_conf 67654432-11401110221034344444323214-------86-------4--------------3577----------
Q gi|255764490|r 198 YESFNIAA-LWNLNVIYVIENNQYAMGTSVSRASA-------QT-------N--------------FSKR---------- 238 (364)
Q Consensus 198 ~Ealn~A~-~~~lPvifvvenN~~aist~~~~~~~-------~~-------~--------------i~~r---------- 238 (364)
|||||.|+ ..+-|+|.|++||+.+||.+..--.. .. . ..+|
T Consensus 155 ~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~ 234 (627)
T COG1154 155 FEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLLV 234 (627)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCC
T ss_conf 99985332304899899980798645877547999999986263577888877999985153789999999975302567
Q ss_pred ----HHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCC--CCCCCCC
Q ss_conf ----777631111-21000023368875421024554546558983156688766--6787667
Q gi|255764490|r 239 ----GVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHS--MSDPANY 295 (364)
Q Consensus 239 ----a~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs--~~D~~~Y 295 (364)
.+.+|+.++ .|||+|+.++..+++.+++ -+||+|||+.|-.-.|=. +.|+..|
T Consensus 235 ~~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd----~~gPvllHv~T~KGKGY~pAE~d~~~~ 294 (627)
T COG1154 235 PGTLFEELGFNYIGPIDGHNLEELIPTLKNAKD----LKGPVLLHVVTKKGKGYKPAEEDPIKY 294 (627)
T ss_pred CHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHC----CCCCEEEEEEECCCCCCCHHHCCHHHC
T ss_conf 302589818746788587789999999999853----799889999965888888235496535
No 29
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.62 E-value=3.3e-16 Score=124.02 Aligned_cols=226 Identities=20% Similarity=0.258 Sum_probs=140.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCHHHHHHHHHHHC-CCCCE-EEE-CCCCHHHHH
Q ss_conf 76343888999999999899999999999999789877722058--98789999999623-89989-994-300689999
Q gi|255764490|r 42 FEVSEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLC--IGQEAVIVGMKMSL-TEGDQ-MIT-AYREHGHIL 116 (364)
Q Consensus 42 ~~~~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~--~GqEa~~vg~~~al-~~~D~-~~~-~yR~~~~~l 116 (364)
.++++|+.++|.++=. .+|.+-..+.+ +.| | |++ .|---+.+++-..+ .|.|. |++ -|=+-.+++
T Consensus 16 ~dlk~l~~~~L~~la~---~iR~l~id~v~--~~s---G--Hpg~~lG~ael~~aL~~~f~~pRDRfVlS~GH~SY~~l~ 85 (642)
T PRK12571 16 ADLRALSDAELEQLAD---EIRAEVISAVS--ETG---G--HLGSSLGVVELTVALHAVFNTPRDKLVWDVGHQCYPHKL 85 (642)
T ss_pred HHHHHCCHHHHHHHHH---HHHHHHHHHHH--HCC---C--CCCCCHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHH
T ss_conf 9987299999999999---99999999997--658---9--788666799999999872499988779848568899999
Q ss_pred HHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 97421-22223432101234434556773211122123676674667674325431001123344443310256654302
Q gi|255764490|r 117 ACGVD-ASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQG 195 (364)
Q Consensus 117 ~~G~~-~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG 195 (364)
.-|.. -.+-|.|+=+. +|+..+. -..+..-.+|+.|+++..|+|+|.|.++.+.+.-++|++|||+.+||
T Consensus 86 LtG~~d~lk~fRq~gs~-tGhp~~~--------et~~~~~~~G~~g~gls~AvGmA~A~~l~~~d~~v~~i~GDG~LmEG 156 (642)
T PRK12571 86 LTGRRDQFRTLRQKGGL-SGFTKRS--------ESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAG 156 (642)
T ss_pred HHCCHHHHHHHHCCCCC-CCCCCCC--------CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHH
T ss_conf 86888787517606999-9978699--------88989878776535889999999999856999708999757144405
Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCC-------CCC----------H--------H--------------
Q ss_conf 456765443211401110221034344444323214-------864----------3--------5--------------
Q gi|255764490|r 196 QVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASA-------QTN----------F--------S-------------- 236 (364)
Q Consensus 196 ~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~-------~~~----------i--------~-------------- 236 (364)
..|||+|+|+.++.++|+++.||+++|+.++..... ... + .
T Consensus 157 vs~EA~slAGhl~~kLIvi~DDN~iSIdg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (642)
T PRK12571 157 MAYEALNNAGAADRRLIVILNDNEMSIAPPVGALANYLSTLRSSDPFATLRAIAKGVEERLPGPLRDGARRARELVTGMP 236 (642)
T ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
T ss_conf 89999985140368769999438744277731788999998834408999999999986064468999999998753378
Q ss_pred ---HHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf ---77777631111-210000233688754210245545465589831566887666
Q gi|255764490|r 237 ---KRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSM 289 (364)
Q Consensus 237 ---~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~ 289 (364)
...+.+|+... .+||+|+.+..++++.+.+. ..+|++|++.|-+..|...
T Consensus 237 ~~~~~~e~~g~~~~~p~dghd~~~~~~~l~~ak~~---~~~P~~i~~~t~kg~g~~~ 290 (642)
T PRK12571 237 GGGTLFEELGFTYVGPIDGHDMEALLSVLRAARAR---ATGPVLVHVVTEKGKGYAP 290 (642)
T ss_pred CCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEEEHHHHHCCCCH
T ss_conf 76506787387766787877899999999999972---5998575201476337753
No 30
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.48 E-value=1.6e-12 Score=100.35 Aligned_cols=197 Identities=19% Similarity=0.164 Sum_probs=133.0
Q ss_pred CCEEEEC-CCCH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9899943-0068---99999742122223432101234434556773211---122123676674667674325431001
Q gi|255764490|r 102 GDQMITA-YREH---GHILACGVDASKIMAELTGRQGGISKGKGGSMHMF---STKNGFYGGHGIVGAQVSLGTGIAFAN 174 (364)
Q Consensus 102 ~D~~~~~-yR~~---~~~l~~G~~~~~~~ae~~gk~~g~~~Gr~gs~H~~---~~~~~~~~~~~~vg~~~p~A~G~A~a~ 174 (364)
+|.|+.. |=.- +.....|.-..+-|..+. +.. .+.|-+.|.. .|+. +--.++.+|-+...|++.|++.
T Consensus 60 ~D~V~~qgHasP~~yA~~~L~Grl~~e~L~~fR-~e~---~~~Gl~syP~p~~~p~~-~~f~TgSmGlG~~~ai~~A~~~ 134 (386)
T cd02017 60 GDLVYFQGHASPGIYARAFLEGRLTEEQLDNFR-QEV---GGGGLSSYPHPWLMPDF-WEFPTVSMGLGPIQAIYQARFN 134 (386)
T ss_pred CCEEEECCCCCHHHHHHHHHHCCCCHHHHHHHC-CCC---CCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHH
T ss_conf 887886687678999999983799989997650-335---79988899998889850-2167777773689999999999
Q ss_pred CCCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH-HHHHHHCCCCCCCCCCCCC-CCCCCHHHHHHHHHHH
Q ss_conf 1233-------44443310256654302456765443211401-1102210343444443232-1486435777776311
Q gi|255764490|r 175 KYRR-------SDKICVVCFGDGAANQGQVYESFNIAALWNLN-VIYVIENNQYAMGTSVSRA-SAQTNFSKRGVSFNIP 245 (364)
Q Consensus 175 k~~~-------~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lP-vifvvenN~~aist~~~~~-~~~~~i~~ra~~~gi~ 245 (364)
||.. +++-++||+|||.+.||..|||+.+|+.++|- ++|||.-|.-.+..|+... .-...+.....++||.
T Consensus 135 rYl~~rg~~~~~~~rv~~~~GDgEldEg~~~eAi~~a~~~~LdNL~~vvd~N~Q~LDgpV~gn~kiiqele~~F~~aGW~ 214 (386)
T cd02017 135 RYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGIFRGAGWN 214 (386)
T ss_pred HHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCE
T ss_conf 99986488887777389996252115098999999999847797799995698656752267632589999999877980
Q ss_pred HHHH---------------------------------------------------------------------HCCHHHH
Q ss_conf 1121---------------------------------------------------------------------0000233
Q gi|255764490|r 246 GMQV---------------------------------------------------------------------DGMDIRA 256 (364)
Q Consensus 246 ~~~v---------------------------------------------------------------------DG~D~~~ 256 (364)
.++| .|+|+..
T Consensus 215 VIkv~wG~~wd~lf~~d~~g~L~~~m~e~~dg~yQ~~~~~~Ga~~Re~ffg~~pel~~lv~~lsD~dl~~L~rGGHD~~k 294 (386)
T cd02017 215 VIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDEDLWALNRGGHDPRK 294 (386)
T ss_pred EEEECCCHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCHHH
T ss_conf 89853221499997678754699998866788889887247599999980898889999850788789987628999899
Q ss_pred HHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCC---CC---C-CCCCHHHHHHHHH
Q ss_conf 6887542102455454655898315668876667---87---6-6789999999898
Q gi|255764490|r 257 VKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMS---DP---A-NYRTREEINEMRS 306 (364)
Q Consensus 257 v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~---D~---~-~YR~~~Ei~~~~~ 306 (364)
||+++++|.+. ..+|++|-++|..-+|.-.+ +. + +--+.++++.+|.
T Consensus 295 l~aAy~~A~~~---~grPTVIlA~TvKG~Glg~age~~N~aHq~Kkl~~~~l~~fRd 348 (386)
T cd02017 295 VYAAYKKAVEH---KGKPTVILAKTIKGYGLGAAGEGRNHAHQVKKMTEDELKALRD 348 (386)
T ss_pred HHHHHHHHHHC---CCCCEEEEEEEEECCCCCCCCCCCCHHHHHCCCCHHHHHHHHH
T ss_conf 99999999847---9998799977441278881336765544431599999999999
No 31
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.36 E-value=2.6e-13 Score=105.42 Aligned_cols=119 Identities=18% Similarity=0.335 Sum_probs=90.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC----------
Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-34444----------
Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT---------- 224 (364)
Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist---------- 224 (364)
..|.+|..+|-|.|+++|. .++.+||+.|||+..-. + ..|-.|..++||+++||-||+ |++--
T Consensus 419 ~~GsmG~~lpaAIGA~lA~----p~~~Vv~i~GDG~f~m~-~-qEL~Ta~r~~lpi~iiV~NN~~yg~ir~~q~~~~~g~ 492 (574)
T PRK07979 419 GLGTMGFGLPAALGVKMAL----PEETVVCVTGDGSIQMN-I-QELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGR 492 (574)
T ss_pred CCCCCCCCHHHHHHHHHHC----CCCCEEEEECCHHHHHH-H-HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCC
T ss_conf 8731122068999999858----99978999781587641-9-9999999958992899995870469999999861887
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf -43232148643577777631111210000233688754210245545465589831566
Q gi|255764490|r 225 -SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 225 -~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
+.......+++++.|++||+++++|+ ++.++..++++|++..+.+ +|+|||+.+-+
T Consensus 493 ~~~~~~~~~pDf~~lA~a~G~~g~~v~--~~~el~~al~~Al~~~~~~-~p~lidV~vd~ 549 (574)
T PRK07979 493 HSQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELESKLSEALEQVRNN-RLVFVDVTVDG 549 (574)
T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHCCCCC-CCEEEEEEECC
T ss_conf 674566899999999997799799978--9999999999998423799-81899999788
No 32
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.36 E-value=1.2e-13 Score=107.73 Aligned_cols=122 Identities=20% Similarity=0.264 Sum_probs=90.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCC----------
Q ss_conf 76674667674325431001123344443310256654302456765443211401110221034-3444----------
Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMG---------- 223 (364)
Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~ais---------- 223 (364)
+..|.+|-.+|-|.|+++| ..++-+||+.|||+..-. ..| |-.|..++||+++||-||+ |++-
T Consensus 54 ~~~g~mG~glPaAiGaklA----~Pdr~Vv~i~GDGsf~m~-~~E-L~Ta~r~~lpii~vV~NN~~~g~ir~~q~~~~~~ 127 (202)
T cd02006 54 GQAGPLGWTVPAALGVAAA----DPDRQVVALSGDYDFQFM-IEE-LAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMD 127 (202)
T ss_pred CCCCHHHHHHHHHHHHHHH----CCCCEEEEEECCCCHHHH-HHH-HHHHHHHCCCEEEEEEECCHHHHHHHHHHHHCCC
T ss_conf 9987033189999999987----699859999768405512-999-9999996998399999795568999999985347
Q ss_pred ----CCCCCC------CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf ----443232------1486435777776311112100002336887542102455454655898315668
Q gi|255764490|r 224 ----TSVSRA------SAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRY 284 (364)
Q Consensus 224 ----t~~~~~------~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~ 284 (364)
...+.. ....++.+.|++||+.+++|+ ++.++-.++++|++...++++|+|||+.+-|-
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~D~~kiAea~G~~g~rV~--~~~eL~~Al~~A~~~~~~~~~P~lIeviidr~ 196 (202)
T cd02006 128 YQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAILERV 196 (202)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
T ss_conf 4423254666885446789899999997899899979--99999999999998751479978999997671
No 33
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.35 E-value=5.5e-13 Score=103.37 Aligned_cols=116 Identities=26% Similarity=0.383 Sum_probs=89.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC--------
Q ss_conf 676674667674325431001123344443310256654302456765443211401110221034-34444--------
Q gi|255764490|r 154 YGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT-------- 224 (364)
Q Consensus 154 ~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist-------- 224 (364)
.+..|.+|.++|.|.|+++|. .++.++|+.|||+.... ...|..|..+++|+++||.||+ |++-.
T Consensus 42 ~~~~g~mG~~~p~AiGa~~a~----p~~~vv~i~GDG~f~~~--~~el~ta~~~~l~i~~iv~nN~~~~~~~~~~~~~~~ 115 (168)
T cd00568 42 STGFGAMGYGLPAAIGAALAA----PDRPVVCIAGDGGFMMT--GQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYG 115 (168)
T ss_pred CCCCCHHHHHHHHHHHHHHHC----CCCEEEEEECCCCCEEC--CHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCC
T ss_conf 898753777999999999878----99839999779742113--176645653188426999977613677999985028
Q ss_pred --CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf --432321486435777776311112100002336887542102455454655898315
Q gi|255764490|r 225 --SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364)
Q Consensus 225 --~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364)
+........++++.+++||+++++|+. +.++.+++++|+ +.++|+|||++|
T Consensus 116 ~~~~~~~~~~~d~~~~a~~~G~~~~~v~~--~~el~~al~~a~----~~~~p~li~V~t 168 (168)
T cd00568 116 GRVSGTDLSNPDFAALAEAYGAKGVRVED--PEDLEAALAEAL----AAGGPALIEVKT 168 (168)
T ss_pred CCCCCCCCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHH----HCCCCEEEEEEC
T ss_conf 98765658888778999974986999899--999999999998----389978999989
No 34
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.35 E-value=4.5e-13 Score=103.93 Aligned_cols=117 Identities=21% Similarity=0.353 Sum_probs=85.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCC----------C
Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-3444----------4
Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMG----------T 224 (364)
Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~ais----------t 224 (364)
..|.+|-.+|-|.|+++|. .++.+||+.|||+..-. . ..|-.|..++||+++||.||+ |++- -
T Consensus 420 ~~G~mG~glpaAiGA~lA~----p~r~Vv~i~GDG~f~m~-~-~EL~Ta~r~~lpi~ivV~NN~~yg~ir~~q~~~~~~~ 493 (570)
T PRK06725 420 GLGTMGFGFPAAIGAQLAK----EEELVICIAGDASFQMN-I-QELQTIAENNIPVKVFIINNKFLGMVRQWQEMFYENR 493 (570)
T ss_pred CCCCCCCCHHHHHHHHHHC----CCCCEEEEECCHHHHHH-H-HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCC
T ss_conf 7776456079999999848----99818999775277522-9-9999999968993899997972059999999862898
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf 432321486435777776311112100002336887542102455454655898315668
Q gi|255764490|r 225 SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRY 284 (364)
Q Consensus 225 ~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~ 284 (364)
.........++.+.|++||+++++|+ ++.++-.++++|++ .+||+|||+.+-+.
T Consensus 494 ~~~~~l~~pdf~~~A~a~G~~g~~V~--~~~eL~~Al~~Al~----~~gP~lIev~vd~~ 547 (570)
T PRK06725 494 LSESKIGSPDFVKVAEAYGVKGLRAT--NSTEAKQVMLEAFA----HEGPVVVDFCVEEG 547 (570)
T ss_pred CCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHC----CCCCEEEEEEECCC
T ss_conf 67574899999999997799799979--99999999999981----99989999997887
No 35
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.34 E-value=3.9e-13 Score=104.32 Aligned_cols=120 Identities=17% Similarity=0.209 Sum_probs=90.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCCC-----C--
Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-3444443-----2--
Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTSV-----S-- 227 (364)
Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~~-----~-- 227 (364)
..|.+|-.+|-|.|+++| ..++-+||+.|||+..=. . ..|-.|..++||+++||-||+ |++--.. .
T Consensus 433 ~~G~mG~glpaAiGa~lA----~p~~~Vv~i~GDG~f~m~-~-~EL~Ta~r~~lpv~ivV~NN~~yg~~~~~q~~~~~~~ 506 (589)
T PRK07525 433 SFGNCGYAFPAIIGAKIA----CPDRPVVGFAGDGAWGIS-M-NEMTTCVRHNWPVTAVVFRNYQWGAEKKNQTDFYNNR 506 (589)
T ss_pred CCCCCCCHHHHHHHHHHH----CCCCCEEEEECCHHHHHH-H-HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCC
T ss_conf 656532257899999985----899968999885687552-9-9999999978892899997883348999999871884
Q ss_pred ----CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf ----32148643577777631111210000233688754210245545465589831566
Q gi|255764490|r 228 ----RASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 228 ----~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
......++++.|++||+++++|+ ++.++-.++++|++-..+.++|+|||+.|-|
T Consensus 507 ~~~~~~~~~~df~~~A~a~G~~g~rV~--~~~el~~al~~Al~~~~~~g~P~lidv~~d~ 564 (589)
T PRK07525 507 FVGTELDNNVSYAGIARAMGAEGVVVD--TQEELGPALKRAIDAQMNEGKTTVIEVMCNQ 564 (589)
T ss_pred EECCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHHCCCCCCCEEEEEEECH
T ss_conf 120326999898999997798799989--9999999999999733358994899999682
No 36
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.34 E-value=6e-13 Score=103.16 Aligned_cols=121 Identities=19% Similarity=0.326 Sum_probs=89.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHCCCHHHHHHHCCC-CCCCC--------
Q ss_conf 7667466767432543100112334444331025665430245676-5443211401110221034-34444--------
Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYES-FNIAALWNLNVIYVIENNQ-YAMGT-------- 224 (364)
Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ea-ln~A~~~~lPvifvvenN~-~aist-------- 224 (364)
+..|.+|..+|-|+|+++|. .++-+||+.|||+..=. ..|. |..|..++||+++||-||+ |++--
T Consensus 427 ~~~g~mG~~lpaAiGa~lA~----p~r~Vv~i~GDGsf~m~-~~e~~l~ta~r~~lpi~ivV~NN~~yg~i~~~~~~~~~ 501 (568)
T PRK08327 427 GSAGGLGWALGAALGAKLAR----PDRTVIATVGDGSFIFG-VPTACYYVAERYGLPIVVIVLNNGGWLAVAEAVLEVYP 501 (568)
T ss_pred CCCCCCCCCHHHHHHHHHHC----CCCEEEEEECCCHHHHC-CHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCC
T ss_conf 88775455148999999739----99829999846177647-65899999999783949999968621188999999703
Q ss_pred ----------CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf ----------43232148643577777631111210000233688754210245545465589831566
Q gi|255764490|r 225 ----------SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 225 ----------~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
+...-.+..++++.|++||+++++|+ ++.++-.++++|++..+. +||+|||+.+-|
T Consensus 502 ~g~~~~~~~~~~~~~~p~~Df~~lA~a~G~~g~~V~--~~~el~~Al~~Ala~~~~-~~p~lieV~vd~ 567 (568)
T PRK08327 502 DGLAARANTFPGTDFTPRPDFAKIARAFGGYAERVE--TPEELPGALGEALAAIRE-GRSAVLDVQVDR 567 (568)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHHCCC-CCEEEEEEECCC
T ss_conf 332211366766567899999999997798599979--999999999999861679-976999998289
No 37
>PRK07064 hypothetical protein; Provisional
Probab=99.32 E-value=6.2e-13 Score=103.02 Aligned_cols=128 Identities=21% Similarity=0.347 Sum_probs=88.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCC
Q ss_conf 1122123676674667674325431001123344443310256654302456765443211401110221034-344444
Q gi|255764490|r 147 FSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTS 225 (364)
Q Consensus 147 ~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~ 225 (364)
+.+...+.+..|.+|..+|.|+|+++| +.++-++|+.|||+..-. .. .|-.|..++||+++||-||+ |++--.
T Consensus 394 ~~p~~~~~~~~g~mG~glpaAiGa~lA----~p~~~vv~i~GDGsf~m~-~~-eL~Ta~r~~lpi~ivV~NN~~~g~i~~ 467 (544)
T PRK07064 394 FEPRANVHALGGGIGQGLQMGIGAALA----GPGRKTVCLVGDGGLMLN-LG-ELATAVQENANMVIVLMNDGGYGVIRN 467 (544)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHH----CCCCCEEEEECHHHHHHH-HH-HHHHHHHHCCCCEEEEEECCCCHHHHH
T ss_conf 677752466887510068999999985----989978999851797765-99-999999968690899996894489999
Q ss_pred C----------CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 3----------232148643577777631111210000233688754210245545465589831566887
Q gi|255764490|r 226 V----------SRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRG 286 (364)
Q Consensus 226 ~----------~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~g 286 (364)
. .......++.+.|++||+++++|+- +.++.+++++|+. .+||+|||+++--+.+
T Consensus 468 ~q~~~~~~~~~~~dl~~~df~~lA~a~G~~g~rV~~--~~eL~~al~~A~~----~~gP~vIeV~~~~i~p 532 (544)
T PRK07064 468 IQDAQYGGRRCYVELHTPDFAQLAASLGLPHWRVTS--ADDFEAVLREALA----KEGPVLVEVDMLSIGP 532 (544)
T ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHHH----CCCCEEEEEECCCCCC
T ss_conf 998743887455768999999999977997999799--9999999999982----8995899998787798
No 38
>PRK06154 hypothetical protein; Provisional
Probab=99.32 E-value=6.4e-13 Score=102.98 Aligned_cols=120 Identities=16% Similarity=0.196 Sum_probs=87.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC--------CC
Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-34444--------43
Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT--------SV 226 (364)
Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist--------~~ 226 (364)
..|.+|-.+|-|.|+++| ..++.+++++|||+..=. . -.|-.|..++||+++||-||+ |++-. ..
T Consensus 420 ~~g~mG~glpaAiGa~lA----~p~~~Vv~i~GDGsf~m~-~-qEL~Ta~r~~lpv~viV~NN~~~g~~~~~~~~~~~~~ 493 (556)
T PRK06154 420 KTTQLGYGLGLAMGAKLA----RPDALVANLLGDAAFGEC-G-MDFETAVRNRIPTVTILLNNGCMGGYDKHMPLSTTKY 493 (556)
T ss_pred CCCCCCCHHHHHHHHHHH----CCCCCEEEEECCHHHHHH-H-HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCC
T ss_conf 877445406999999973----899938999873798877-9-9999999949997899996806389998867506766
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf 2321486435777776311112100002336887542102455454655898315668
Q gi|255764490|r 227 SRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRY 284 (364)
Q Consensus 227 ~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~ 284 (364)
.......++++.|++||+.+++|+ ++.++-.++++|++++.+ ++|+|||++|-|=
T Consensus 494 ~~~~~~~Df~~lA~a~G~~g~~V~--~~~el~~Al~~A~~~~~~-g~P~lIeV~~~~e 548 (556)
T PRK06154 494 RTRFLSGDYAMIARALGGYTERVE--DPERLVPALRRAARKAKT-GRPALLEIMTAEE 548 (556)
T ss_pred CCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHHCCC-CCEEEEEEEECCC
T ss_conf 787589999999997799799979--999999999999854889-9839999998987
No 39
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.32 E-value=7.1e-13 Score=102.66 Aligned_cols=115 Identities=20% Similarity=0.319 Sum_probs=81.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC-----------
Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-34444-----------
Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT----------- 224 (364)
Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist----------- 224 (364)
.|.+|.++|-|.|+++| ..++-+||+.|||+..=. .. .|-.|..++||+++||-||+ |++--
T Consensus 428 ~g~mG~glpaAIGA~lA----~P~r~Vv~i~GDGsf~m~-~~-EL~Tavr~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~ 501 (594)
T PRK09107 428 LGTMGYGLPAALGVQVA----HPDALVIDIAGDASIQMN-MQ-EMSTAVQYNLPIKIFILNNQYMGMVRQWQQLLHGNRL 501 (594)
T ss_pred CCCHHHHHHHHHHHHHH----CCCCCEEEEECCHHHHHH-HH-HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCC
T ss_conf 56222269999999986----889948999887187655-99-9999999688928999979865089999998638866
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 43232148643577777631111210000233688754210245545465589831566
Q gi|255764490|r 225 SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 225 ~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
........+++++.|++||+++++|+ ++.++-.++++|++ .+||+|||+.+-|
T Consensus 502 ~~~~~~~~pDf~~lA~a~G~~g~rV~--~~~el~~Al~~Al~----~~gP~lIeV~vd~ 554 (594)
T PRK09107 502 SHSYTEALPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMID----VDKPVIFDCRVAN 554 (594)
T ss_pred CCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECC
T ss_conf 76567899999999997799799979--99999999999982----8998899999779
No 40
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.30 E-value=1.1e-12 Score=101.39 Aligned_cols=123 Identities=23% Similarity=0.361 Sum_probs=87.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCC---------CC
Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-3444---------44
Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMG---------TS 225 (364)
Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~ais---------t~ 225 (364)
..|.+|.++|-|+|+++| ..++-+||+.|||+..-- ..| |-.|..++||+++||-||+ |++- ..
T Consensus 406 ~~GsmG~glpaAIGA~lA----~P~r~Vv~i~GDG~f~m~-~~E-L~Tavr~~lpv~ivV~NN~~~g~i~~~~~~~g~~~ 479 (578)
T PRK06546 406 LHGSMANALPHAIGAQAA----DPGRQVISMSGDGGLSML-MGE-LLTVALHDLPVKVVVFNNSSLGMVKLEMLVDGLPD 479 (578)
T ss_pred CCCCCCCCHHHHHHHHHH----CCCCCEEEEECCCHHHHH-HHH-HHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCC
T ss_conf 878765615899999985----899958999894088876-999-99999978897899997843579999998648977
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 32321486435777776311112100002336887542102455454655898315668876667876
Q gi|255764490|r 226 VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPA 293 (364)
Q Consensus 226 ~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D~~ 293 (364)
........++++.|++||+++++|+ ++.++-.++++|++ .+||+|||+.|- ++...=|.
T Consensus 480 ~~~~~~~~Dfa~lA~a~G~~g~rV~--~~~el~~al~~Al~----~~gP~lIeV~vD---p~~~~~p~ 538 (578)
T PRK06546 480 FGTDVPDVDFAAIAAALGIHAVRVE--DPADIRGALKEAFA----HDGPALVDVVTD---PNALSIPP 538 (578)
T ss_pred CCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEEC---CCCCCCCC
T ss_conf 5577999899999997799899979--99999999999981----899689999838---99878899
No 41
>PRK08611 pyruvate oxidase; Provisional
Probab=99.30 E-value=8.5e-13 Score=102.18 Aligned_cols=114 Identities=19% Similarity=0.304 Sum_probs=82.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC---------CC
Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-34444---------43
Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT---------SV 226 (364)
Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist---------~~ 226 (364)
.|.+|.++|-|.|+++| ..++-+||+.|||+..-. . ..|-.|..++||+++||-||+ |++-- +.
T Consensus 407 ~G~mG~glpaAiGA~lA----~p~r~Vv~i~GDGsf~mt-~-qEL~Tavr~~lpv~ivV~NN~~yg~i~~~q~~~g~~~~ 480 (576)
T PRK08611 407 LGTMGCGLPGAIAAKIA----FPNRQAIAICGDGGFSMV-M-QDFVTAVKYKLPITVVVLNNQQLAFIKYEQQAAGELEY 480 (576)
T ss_pred CCCCCCCHHHHHHHHHH----CCCCCEEEEECCHHHHHH-H-HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 77766406999999986----899978999834387665-9-99999999788978999969821899999997379876
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf 23214864357777763111121000023368875421024554546558983156
Q gi|255764490|r 227 SRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTY 282 (364)
Q Consensus 227 ~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ty 282 (364)
.......++++.|++||+++++|+ ++.++-.++++|++ .+||+|||+.+-
T Consensus 481 ~~~l~~~Df~~~A~a~G~~g~rV~--~~~el~~Al~~Al~----~~~P~lIeV~vD 530 (576)
T PRK08611 481 AIDLSDMDYAKFAEACGGKGYTVK--SADELDPAFEEALA----QDKPVIIDVYVD 530 (576)
T ss_pred CCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEEC
T ss_conf 684899899999997799799979--99999999999982----899799999868
No 42
>PRK12474 hypothetical protein; Provisional
Probab=99.29 E-value=1.5e-12 Score=100.58 Aligned_cols=115 Identities=26% Similarity=0.327 Sum_probs=80.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC-C------
Q ss_conf 676674667674325431001123344443310256654302456765443211401110221034-34444-4------
Q gi|255764490|r 154 YGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT-S------ 225 (364)
Q Consensus 154 ~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist-~------ 225 (364)
....|.+|-.+|.|.|+++| ..++.+||+.|||+..-. ..| |-.|..++||+++||-||+ |++-- .
T Consensus 385 ~~~~G~mG~glpaAiGa~lA----~P~r~Vv~i~GDG~f~m~-~~E-L~Tavr~~lpi~~vV~NN~~yg~i~~~~~~~~~ 458 (518)
T PRK12474 385 PLTGGSIGQGLPLAAGAAVA----APDRKVVCPQGDGGAAYT-MQA-LWTMARENLDVTVVIFANRSYAILNGELQRVGA 458 (518)
T ss_pred CCCCCCCCCHHHHHHHHHHH----CCCCCEEEEECCCCHHCC-HHH-HHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHC
T ss_conf 78874000267999946875----898818999478104107-999-999999785929999978630169999999623
Q ss_pred ----------CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf ----------3232148643577777631111210000233688754210245545465589831
Q gi|255764490|r 226 ----------VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEML 280 (364)
Q Consensus 226 ----------~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ 280 (364)
.....+..++++.|++||+++++|+ ++.++-.++++|++ .+||+|||+.
T Consensus 459 ~~~~~~~~~~~~~~~p~~Dfa~iA~a~G~~g~~V~--~~~el~~al~~Al~----~~gP~lIev~ 517 (518)
T PRK12474 459 QGAGRNALSMLDLHNPELNWMKIAEGLGVEASRAT--TAEEFSAQYAAAMA----QRGPRLIEAM 517 (518)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHC----CCCCEEEEEE
T ss_conf 46786532203477999899999997899899979--99999999999973----9997799997
No 43
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.29 E-value=1.2e-12 Score=101.13 Aligned_cols=129 Identities=19% Similarity=0.230 Sum_probs=94.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCC-----------
Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-3444-----------
Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMG----------- 223 (364)
Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~ais----------- 223 (364)
..|.+|-++|-|.|+++| ..++.+||+.|||+..-. -.-|-.|..++||+++||.||+ |++-
T Consensus 417 ~~G~mG~glPaAIGA~lA----~Pdr~VV~i~GDG~f~m~--~qEL~Tavr~~lpvv~vV~NN~~~G~Ir~~Q~~~~~~~ 490 (591)
T PRK11269 417 QAGPLGWTIPAALGVRAA----DPERPVVALSGDYDFQFL--IEELAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMDY 490 (591)
T ss_pred CCCHHHHHHHHHHHHHHH----CCCCCEEEEECCHHHHHH--HHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCC
T ss_conf 655589999999999997----899968999873687541--99999999958890899996882309999999744564
Q ss_pred ---CCCCCC------CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf ---443232------148643577777631111210000233688754210245545465589831566887666787
Q gi|255764490|r 224 ---TSVSRA------SAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDP 292 (364)
Q Consensus 224 ---t~~~~~------~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D~ 292 (364)
+..+.. ....++.+.|++||+.+++|+ ++.++..++++|+..+.++++|+|||+.+-|.--=+.++.
T Consensus 491 ~~~~~~~~~~~~~~~~~~~Df~~~Aea~G~~g~rV~--~~~el~~Al~~Ala~~~~~~~P~lv~v~id~~~~~~~~~~ 566 (591)
T PRK11269 491 CVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAEFRVPVVVEVILERVTNISMGTE 566 (591)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCH
T ss_conf 422055777886556788889999997798799989--9999999999997411357998899999426456565520
No 44
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component; InterPro: IPR011603 2-oxoglutarate dehydrogenase is a key enzyme in the TCA cycle, converting 2-oxoglutarate, coenzyme A and NAD(+) to succinyl-CoA, NADH and carbon dioxide . This activity of this enzyme is tightly regulated and it is a major determinant of the metabolic flux through the TCA cycle. This enzyme is composed of multiple copies of three different subunits: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3) which is often shared with similar enzymes such as pyruvate dehydrogenase . The E2 component forms a large multimeric core which binds the peripheral E1 and E3 subunits. The substrate is transferred between the active sites of the different subunits by a lipoyl moiety, bound to a lysine residue from the E2 polypeptide. This entry represents the E1 subunit of 2-oxoglutarate dehydrogenase. It catalyses the decarboxylation of this compound in a thiamine pyrophosphate-dependent manner, transferring the resultant succinyl group onto the liposyl moiety bound to the E2 subunit. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the E2 component of 2-oxoglutarate dehydrogenase enzyme. ; GO: 0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity, 0030976 thiamin pyrophosphate binding, 0006096 glycolysis.
Probab=99.29 E-value=1.6e-11 Score=93.92 Aligned_cols=303 Identities=22% Similarity=0.299 Sum_probs=212.5
Q ss_pred CCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCHHHHHHHHHHHCC------CCCEEE-ECCCCHH
Q ss_conf 634388899999-9999899999999999999789877722058-987899999996238------998999-4300689
Q gi|255764490|r 43 EVSEFNKEQELS-AYRLMLLIRRFEEKAGQLYGMGMVGGFCHLC-IGQEAVIVGMKMSLT------EGDQMI-TAYREHG 113 (364)
Q Consensus 43 ~~~~ls~e~l~~-~yr~M~~~R~~e~~~~~l~~qg~i~g~~~~~-~GqEa~~vg~~~al~------~~D~~~-~~yR~~~ 113 (364)
+....+.++-+. ..+.+....-|+.-+..-+. +--..+ .|-+++.-++...+. ..|.+. ..||+..
T Consensus 194 ~~~~~~~~~~~~~~l~~l~~~~g~~~~l~~~~~-----g~~~~~~~g~~~~~p~~~~~~~~~~~~g~~~~~~g~~~~g~l 268 (990)
T TIGR00239 194 EPFQFNSEEKLSAFLDRLTAAEGFERFLGAKFP-----GAKRFSLEGLDALVPGLKELIRHSVKSGTEDVVLGMAHRGRL 268 (990)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHH
T ss_conf 023311467889999876654345776520166-----621002232024555689998755420411222200012304
Q ss_pred HHHH--HHHHHHHHHHHHHCCCCCC----------CCCCCCCC-CCCCC------CCC-----CCCCCCCCCCCCCCCCC
Q ss_conf 9999--7421222234321012344----------34556773-21112------212-----36766746676743254
Q gi|255764490|r 114 HILA--CGVDASKIMAELTGRQGGI----------SKGKGGSM-HMFST------KNG-----FYGGHGIVGAQVSLGTG 169 (364)
Q Consensus 114 ~~l~--~G~~~~~~~ae~~gk~~g~----------~~Gr~gs~-H~~~~------~~~-----~~~~~~~vg~~~p~A~G 169 (364)
..|. .|-++..++.++.|+.... ..|+|... |++.. +.+ +...-+.+-..-|+..|
T Consensus 269 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~g~g~~~~~~g~~~~~~~~~~~~~~l~l~~~p~~l~~~~p~~~g 348 (990)
T TIGR00239 269 NVLVNVLGKPPESLFDEFAGKPASDLPSEDPLESATDGTGDVKYHLGRFGSDFTTDGKLVHLPLAFNPSHLEIVSPVVLG 348 (990)
T ss_pred HHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEECCCCCCHHHCCCHHHH
T ss_conf 56776532631356776416531013443421001255541123330012221125662012210364200010301210
Q ss_pred CCCCCCCCC----------CCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCC---HHHHHHHCCCCCCCCCC-CCCCCCCC
Q ss_conf 310011233----------4444331025665-430245676544321140---11102210343444443-23214864
Q gi|255764490|r 170 IAFANKYRR----------SDKICVVCFGDGA-ANQGQVYESFNIAALWNL---NVIYVIENNQYAMGTSV-SRASAQTN 234 (364)
Q Consensus 170 ~A~a~k~~~----------~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~l---PvifvvenN~~aist~~-~~~~~~~~ 234 (364)
...+..... ++.+.+...||.+ .++|.+.|++|+..+... ..+.++.||+.+..|.. ......+-
T Consensus 349 ~~~~~~~~~~~~g~p~~~~~~~l~~~~~gd~~~~g~g~~~~~~~~~~~~~~~~gg~~~~~~~~~~g~~~~~~~~~~~~~~ 428 (990)
T TIGR00239 349 STRARLERLNDLGYPVPEETKVLAILLHGDAAFAGQGVVQETLNLSSLRGYSVGGTIHIVINNQIGFTTSNPADARSTPY 428 (990)
T ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 24666655431378654233203566505422345423555430100454223642688750521222366210014432
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHH
Q ss_conf 35777776311112100002336887542102455454655898315668876667876678999999989838937999
Q gi|255764490|r 235 FSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREEINEMRSNHDPIEQV 314 (364)
Q Consensus 235 i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D~~~YR~~~Ei~~~~~~~DPI~~~ 314 (364)
..+.++++..|.++|+++|+.++..+++.++++....+..++|++.+||.+||...|......+--....++...|...+
T Consensus 429 ~~d~~~~~~~p~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~d~~~~~~~g~~~~d~p~~~~p~~~~~~~~~~~~~~~~ 508 (990)
T TIGR00239 429 CSDLAKGIEAPIFHVNADDPEAVAFAFRLAVEYRNTFKRDVLIDLVGYRRHGHNEADEPSATQPLLYDKIKKHPTPRKVY 508 (990)
T ss_pred HHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHH
T ss_conf 23455432033366247644678899988888765312100010011101467644564210036788775045302455
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999998789998999999999999999999999847
Q gi|255764490|r 315 RKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSD 350 (364)
Q Consensus 315 ~~~L~~~g~~te~e~~~i~~~~~~~v~~a~~~A~~~ 350 (364)
.+.|+..|+++++++.+-.+-+...+.++++.+...
T Consensus 509 ~~~l~~~g~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 544 (990)
T TIGR00239 509 ADKLVSEGVVTEEDVTEHKKWVWNLYRDALEKGDDV 544 (990)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 656653011114566556778888777776544431
No 45
>PRK07524 hypothetical protein; Provisional
Probab=99.29 E-value=1.7e-12 Score=100.32 Aligned_cols=118 Identities=23% Similarity=0.337 Sum_probs=87.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC---------CC
Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-34444---------43
Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT---------SV 226 (364)
Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist---------~~ 226 (364)
.|.+|..+|-|+|+++|. .++-++|+.|||+..-. .. .|-.+..+++|+++||-||+ |++-- +.
T Consensus 406 ~G~mG~~lpaaiGaalA~----p~r~vi~i~GDGsf~m~-~~-eL~Ta~r~~lpi~iiV~NN~gyg~i~~~~~~~~~~~~ 479 (534)
T PRK07524 406 YGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQFT-LP-ELASAVEADLPLVVLLWNNQGYGEIRRYMVARDIEPV 479 (534)
T ss_pred CCCCCCCHHHHHHHHHHC----CCCCEEEEECCHHHHHH-HH-HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCC
T ss_conf 787664359999999829----89978999872687541-99-9999999785918999979832599999986278865
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 232148643577777631111210000233688754210245545465589831566887
Q gi|255764490|r 227 SRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRG 286 (364)
Q Consensus 227 ~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~g 286 (364)
.......++++.|++||+++.+|+ ++.++.+++++|++ .+||+|||+++-||..
T Consensus 480 ~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~al~----~~gp~lIeV~~~r~~~ 533 (534)
T PRK07524 480 GVDPYTPDFAALARAFGCAAERVA--DLDQLQAALRAAFA----RPGPTLIEVDQARWFA 533 (534)
T ss_pred CCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHC----CCCCEEEEEECCEECC
T ss_conf 577899999999997799799979--99999999999980----8995899997823046
No 46
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.28 E-value=1.2e-12 Score=101.15 Aligned_cols=114 Identities=25% Similarity=0.399 Sum_probs=81.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC------------
Q ss_conf 74667674325431001123344443310256654302456765443211401110221034-34444------------
Q gi|255764490|r 158 GIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT------------ 224 (364)
Q Consensus 158 ~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist------------ 224 (364)
|.+|-.+|-|.|+++| ..++-+||+.|||+..-. ..| |-.|..++||+++||-||+ |++--
T Consensus 434 GsmG~glPaAiGA~lA----~p~r~Vv~i~GDGsf~mt-~qE-L~Ta~r~~Lpv~ivV~NN~~~G~ir~~q~~~~~~~~~ 507 (615)
T PRK07418 434 GTMGFGMPAAMGVKVA----LPDEQVICIAGDASFLMN-IQE-LGTLAQYGIPVKTVIINNGWQGMVRQWQESFYDERYS 507 (615)
T ss_pred CCHHHHHHHHHHHHHH----CCCCCEEEEECCHHHHHH-HHH-HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCC
T ss_conf 6325788999999984----899968999844387664-999-9999996899689999798447999999986188767
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 43232148643577777631111210000233688754210245545465589831566
Q gi|255764490|r 225 SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 225 ~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
.........++++.|++||+++++|+ ++.++-.++++|++ .+||+||++.+-|
T Consensus 508 ~~~~~~~~pDf~~lA~a~G~~g~rV~--~~~eL~~Al~~Al~----~~gP~lidV~vd~ 560 (615)
T PRK07418 508 ASNMLPGMPDFVKLAEAFGVKGMLIS--ERDQLKDAIAEALA----HDGPVLIDVHVRR 560 (615)
T ss_pred CCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECC
T ss_conf 34577899999999997799799979--99999999999980----8997899999888
No 47
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.28 E-value=1.3e-12 Score=100.90 Aligned_cols=115 Identities=21% Similarity=0.325 Sum_probs=82.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC---------CC
Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-34444---------43
Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT---------SV 226 (364)
Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist---------~~ 226 (364)
.|.+|.++|-|.|+++| ..++-+||+.|||+..=. .. .|-.|..++||+++||-||+ |++-. +.
T Consensus 407 ~GsmG~glpaAIGa~~A----~p~r~Vv~i~GDG~f~m~-~~-EL~Ta~r~~lpv~ivV~NN~~~g~i~~~~~~~g~~~~ 480 (574)
T PRK09124 407 HGSMANAMPQALGAQAA----HPGRQVVSLSGDGGFSML-MG-DFLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLTD 480 (574)
T ss_pred CCCCCCHHHHHHHHHHH----CCCCCEEEEECCCHHHHH-HH-HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCC
T ss_conf 66520057999999986----899948999886288754-99-9999999788958999978167899999996399887
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 232148643577777631111210000233688754210245545465589831566
Q gi|255764490|r 227 SRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 227 ~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
.......++++.|++||+++++|+ ++.++-.++++|++ ..||+|||+.|-+
T Consensus 481 g~~l~~pDfa~lA~a~G~~g~rV~--~~~el~~al~~Al~----~~gP~lieV~vdp 531 (574)
T PRK09124 481 GTDLHNPDFAAIANAAGITGIRVE--KASELDGALQRAFA----HDGPALVDVVTAK 531 (574)
T ss_pred CCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECC
T ss_conf 785899899999997799799979--99999999999981----8997999999798
No 48
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.28 E-value=1.8e-12 Score=100.06 Aligned_cols=115 Identities=22% Similarity=0.315 Sum_probs=82.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCCC-----CC--
Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-3444443-----23--
Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTSV-----SR-- 228 (364)
Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~~-----~~-- 228 (364)
.|.+|.++|-|+|+++| ..++.+||+.|||+..-. . -.|-.|..++||+++||-||+ |++--.. ..
T Consensus 420 ~G~mG~glpaAiGA~lA----~pdr~Vv~i~GDG~f~m~-~-qEL~Ta~r~~lpv~ivV~NN~~yg~ir~~q~~~~~~~~ 493 (572)
T PRK06456 420 MGTMGFGLPAAMGAKLA----RPDKVVVDLDGDGSFLMT-G-NNLATAVDEHIPIISVIFDNRTLGLVRQVQDLFFGRRI 493 (572)
T ss_pred CCCCCCCCHHHHHHHHH----CCCCEEEEEECCHHHHCC-H-HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 66656520899999983----899829999875586303-9-99999999589938999968703799999998628864
Q ss_pred ---CC-CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf ---21-48643577777631111210000233688754210245545465589831566
Q gi|255764490|r 229 ---AS-AQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 229 ---~~-~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
.. ...++++.|++||+.+++|+ ++.++-.++++|++ .+||+|||+.+-|
T Consensus 494 ~~~~~~~~pdfa~iA~a~G~~g~~V~--~~~el~~al~~a~~----~~gP~lIeV~iD~ 546 (572)
T PRK06456 494 VGVDYGPSPDFVKLAEAFGALGFNAT--TYEEIEKSIKTAIK----ENIPAVIRVPVDK 546 (572)
T ss_pred CCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECC
T ss_conf 45767999999999997899799969--99999999999982----8996999999888
No 49
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.28 E-value=2.2e-12 Score=99.50 Aligned_cols=116 Identities=23% Similarity=0.380 Sum_probs=82.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC----------
Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-34444----------
Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT---------- 224 (364)
Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist---------- 224 (364)
..|.+|..+|-|.|+++| ..++.++|+.|||+..-. . -.|-.|..++||+++||-||+ |++--
T Consensus 422 ~~G~mG~glpaAiGA~lA----~p~r~Vv~i~GDG~f~m~-~-qEL~Ta~r~~lpv~ivV~NN~~yg~ir~~q~~~~~~~ 495 (571)
T PRK07710 422 GLGTMGFGLPAAIGAQIA----KPDELVVAIVGDAGFQMT-L-QELSVLKEHSLPVKVFILNNEALGMVRQWQEEFYNQR 495 (571)
T ss_pred CCCCCCCCCHHHHHHHHH----CCCCEEEEEECCHHHHCC-H-HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCC
T ss_conf 877656640899999973----899838999778056436-9-9999999959993899997871489999999862887
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf -43232148643577777631111210000233688754210245545465589831566
Q gi|255764490|r 225 -SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 225 -~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
.........+++..|++||+++++|+- +.++-.++++|++ ..||+|||+.+-|
T Consensus 496 ~~~~~~~~~pdf~~~A~a~G~~g~~V~~--~~el~~Al~~Al~----~~gP~lIeV~vd~ 549 (571)
T PRK07710 496 YSHSLLSCQPDFVALAEAYGIKGVRIDD--PLEAKEQLQHAIT----LQEPVVIDCRVLQ 549 (571)
T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHHC----CCCCEEEEEEECC
T ss_conf 7766678999999999977998999799--9999999999981----8996999999788
No 50
>PRK08617 acetolactate synthase; Reviewed
Probab=99.28 E-value=2.1e-12 Score=99.68 Aligned_cols=115 Identities=23% Similarity=0.338 Sum_probs=81.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCC---------C
Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-344444---------3
Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTS---------V 226 (364)
Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~---------~ 226 (364)
.+.+|..+|.|.|+++| ..++-+||+.|||+..-. ..| |-.|..++||+++||-||+ |++--. .
T Consensus 413 ~g~mG~glpaAIGA~lA----~p~~~Vv~i~GDGsf~m~-~qE-L~Ta~r~~lpi~iiV~NN~~yg~i~~~~~~~~~~~~ 486 (552)
T PRK08617 413 MQTLGVALPWAIAAALV----RPGTKVVSVSGDGGFLFS-AME-LETAVRLKLNIVHIIWNDGHYDMVEFQEEMKYGRSS 486 (552)
T ss_pred CCCCCCCHHHHHHHHHH----CCCCCEEEEECCHHHHHH-HHH-HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCC
T ss_conf 66667517799999986----899828999885488621-999-999999588938999968952378899887528756
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 232148643577777631111210000233688754210245545465589831566
Q gi|255764490|r 227 SRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 227 ~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
.......++++.|++||+++++|+- +.++-+++++|++ .+||+|||+.+-|
T Consensus 487 g~d~~~~df~~lA~a~G~~g~~V~~--~~eL~~al~~A~~----~~gP~lIeV~vD~ 537 (552)
T PRK08617 487 GVDFGPVDFVKYAESFGAKGLRVTS--PDELEPVLKEALA----TDGPVVIDIPVDY 537 (552)
T ss_pred CCCCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHHH----CCCCEEEEEEECH
T ss_conf 6859999999999977997999799--9999999999981----8995899999470
No 51
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.28 E-value=1.2e-12 Score=101.18 Aligned_cols=119 Identities=23% Similarity=0.262 Sum_probs=88.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC----------
Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-34444----------
Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT---------- 224 (364)
Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist---------- 224 (364)
..|.+|..+|-|+|+++| ..++.+||+.|||+..-. + ..|-.|..++||+++||-||+ |++..
T Consensus 51 ~~g~mG~glpaAiGAk~A----~Pdr~Vv~i~GDGsf~m~-~-~EL~Ta~r~~lpv~~vV~NN~~~g~i~~~q~~~~~~~ 124 (196)
T cd02013 51 SFGNCGYALPAIIGAKAA----APDRPVVAIAGDGAWGMS-M-MEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNR 124 (196)
T ss_pred CCCHHHHHHHHHHHHHHH----CCCCEEEEEECCCCHHHC-H-HHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 866476799999999972----789749999579734214-4-8999999978890699997805789999999870897
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 43232148643577777631111210000233688754210245545465589831566
Q gi|255764490|r 225 SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 225 ~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
.........++++.+++||+++++|+ ++.++-.++++|++...+ ++|+|||+.|-+
T Consensus 125 ~~~~~~~~~df~~~A~a~G~~g~~V~--~~~el~~al~~Ala~~~~-~~P~lIeV~vD~ 180 (196)
T cd02013 125 FVGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMAE-GKTTVIEIVCDQ 180 (196)
T ss_pred CCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHHCCC-CCEEEEEEEECC
T ss_conf 42453699986899997598789978--999999999999985679-986999999786
No 52
>PRK05858 hypothetical protein; Provisional
Probab=99.27 E-value=1.5e-12 Score=100.63 Aligned_cols=114 Identities=20% Similarity=0.276 Sum_probs=81.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCCCC--------
Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-34444432--------
Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTSVS-------- 227 (364)
Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~~~-------- 227 (364)
.|.+|.++|-|.|+++| +.++-++|+.|||+..-. .. .|..|..++||++|||.||+ |++--...
T Consensus 407 ~G~mG~glpaAiGa~lA----~p~r~Vv~i~GDG~f~m~-~q-EL~Ta~r~~lpv~ivV~NN~~yg~~~~~~~~~~g~~~ 480 (543)
T PRK05858 407 FGCLGSGPGYALAAKLA----RPQRQVVLLQGDGAFGFS-GM-EWDTLVRHNVPVVSVIGNNGIWGLEKHPMEALYGYSV 480 (543)
T ss_pred CCCCCCCHHHHHHHHHH----CCCCCEEEEECCHHHHHH-HH-HHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHCCCCC
T ss_conf 77744438899999984----899948999885698756-99-9999999786939999828625899999998639876
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf --3214864357777763111121000023368875421024554546558983156
Q gi|255764490|r 228 --RASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTY 282 (364)
Q Consensus 228 --~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ty 282 (364)
.-.+..++++.|++||+++++|+ ++.++..++++|++ .++|+|||+.|-
T Consensus 481 ~~~~~p~~df~~lA~a~G~~g~~V~--~~~eL~~al~~A~~----~~~P~lIeV~~D 531 (543)
T PRK05858 481 VAELRPGTRYDEVVRALGGHGELVA--VPAELRPALERAFA----SGLPYVVNVLTD 531 (543)
T ss_pred CCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEEC
T ss_conf 3345899999999987899799979--99999999999983----899099999968
No 53
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.27 E-value=1.9e-12 Score=99.87 Aligned_cols=114 Identities=18% Similarity=0.361 Sum_probs=82.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCC----------
Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-344444----------
Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTS---------- 225 (364)
Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~---------- 225 (364)
.|.+|-.+|-|+|+++|. .++-+||+.|||+..-. .. .|-.|..++||+++||-||+ |++--.
T Consensus 425 ~GsmG~glPaAiGA~lA~----p~r~Vv~i~GDGsf~mt-~q-EL~Tavr~~lpv~ivV~NN~~yg~ir~~q~~~~~~~~ 498 (588)
T CHL00099 425 LGTMGYGLPAAIGAQVAH----PNEQVICISGDASFQMN-LQ-ELGTIAQYKLPIKIIIINNKWQGMVRQWQQAFYGERY 498 (588)
T ss_pred CCCCCCCHHHHHHHHHHC----CCCCEEEEECCHHHHHH-HH-HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCC
T ss_conf 755233189999999858----99818999754586321-99-9999999689958999979833699999998628876
Q ss_pred --CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf --323214864357777763111121000023368875421024554546558983156
Q gi|255764490|r 226 --VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTY 282 (364)
Q Consensus 226 --~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ty 282 (364)
.....+..++++.|++||+++++|+ ++.++-.++++|++ .+||+|||+.+-
T Consensus 499 ~~~~~~~~~pDf~~lA~a~G~~g~rV~--~~~el~~Al~~Al~----~~gP~lIeV~vd 551 (588)
T CHL00099 499 SHSNMEEGAPDFVKLAEAFGIKGITIK--SRKDLKSKLQRALD----YDGPVLVDCQVR 551 (588)
T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHC----CCCCEEEEEEEC
T ss_conf 744576899899999997799899979--99999999999982----999789999978
No 54
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.27 E-value=2.1e-12 Score=99.69 Aligned_cols=116 Identities=21% Similarity=0.348 Sum_probs=83.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC----------
Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-34444----------
Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT---------- 224 (364)
Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist---------- 224 (364)
..|.+|..+|-|+|+++| ..++.++|+.|||+..-. . ..|-.|..++||+++||-||+ |++--
T Consensus 412 ~~G~mG~glpaAiGA~lA----~p~r~Vv~i~GDG~f~m~-~-qEL~Ta~r~~lpi~ivV~NN~~~g~i~~~q~~~~~~~ 485 (562)
T PRK06048 412 GLGTMGYGFPAAIGAKVG----RPDKTVIDIAGDGSFQMN-S-QELATVVQNDIPVVSVILNNGYLGMVRQWQELFYDKR 485 (562)
T ss_pred CCCCCCCCCHHHHHHHHH----CCCCCEEEEECCHHHHHH-H-HHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCC
T ss_conf 776767750899999985----899958999861797665-9-9999999978792999996884089999999863887
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf -43232148643577777631111210000233688754210245545465589831566
Q gi|255764490|r 225 -SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 225 -~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
.........++.+.|++||+++++|+- +.++-.++++|+ +..||+|||+.+-|
T Consensus 486 ~~~~~~~~~~df~~lA~a~G~~g~rV~~--~~el~~al~~al----~~~gP~lIeV~vd~ 539 (562)
T PRK06048 486 YSHTFIKGSVDFVKLAEAYGALGLRAEK--PSEVRPAIEEAV----ESGRPVVVDFIVEC 539 (562)
T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHH----HCCCCEEEEEEECC
T ss_conf 6755779999999999978997999699--999999999998----18997999999789
No 55
>PRK08322 acetolactate synthase; Reviewed
Probab=99.26 E-value=2.3e-12 Score=99.41 Aligned_cols=116 Identities=19% Similarity=0.305 Sum_probs=85.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC---------C
Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-34444---------4
Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT---------S 225 (364)
Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist---------~ 225 (364)
..|.+|.++|-|.|+++|. .++-++|++|||+..-.. ..|..|..++||+++||-||+ |++-- .
T Consensus 404 g~g~mG~glpaAIGa~la~----p~r~vv~i~GDGsf~~~~--qeL~Ta~r~~lpv~iiV~NN~~yg~i~~~q~~~~~~~ 477 (547)
T PRK08322 404 ALATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMNS--QELETAVRLGLPLVVLILNDDAYGMIRWKQANMGFED 477 (547)
T ss_pred CCCCCCCCHHHHHHHHHHC----CCCCEEEEECCHHHHHHH--HHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCC
T ss_conf 8666656368999999868----899789997532876619--9999999968690899996894179999999855987
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 3232148643577777631111210000233688754210245545465589831566
Q gi|255764490|r 226 VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 226 ~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
........+++..|++||+++++|+ ++.++-.++++|++ ..||+|||+.+-|
T Consensus 478 ~~~~~~~pdf~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~vD~ 529 (547)
T PRK08322 478 FGLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEALA----QPGVHVIDCPVDY 529 (547)
T ss_pred CCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECH
T ss_conf 6684999999999997799799969--99999999999982----8997899999366
No 56
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.26 E-value=5.2e-12 Score=97.15 Aligned_cols=117 Identities=19% Similarity=0.305 Sum_probs=86.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC---------
Q ss_conf 76674667674325431001123344443310256654302456765443211401110221034-34444---------
Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT--------- 224 (364)
Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist--------- 224 (364)
+..|.+|-.+|.|.|+++|. .++.++|+.|||+..-.. .| |..|+.++||++++|-||+ |++-.
T Consensus 45 ~~~g~mG~glpaAiGa~lA~----p~~~Vv~i~GDG~f~m~~-~E-L~Ta~~~~lpi~iiV~NN~~~g~i~~~q~~~~~~ 118 (177)
T cd02010 45 NGLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFMMNS-QE-LETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGR 118 (177)
T ss_pred CCCCHHHHHHHHHHHHHHHC----CCCEEEEEECCCCCEECC-HH-HHHHHHHCCCEEEEEEECCHHHHHHHHHHHHCCC
T ss_conf 98636888999999999878----998599992898611066-68-8899972884039999898048999999986397
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 43232148643577777631111210000233688754210245545465589831566
Q gi|255764490|r 225 SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 225 ~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
.........++.+.|++||+++++|+ ++.++.+++++|++ .+||+|||+.+-|
T Consensus 119 ~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~~----~~gp~liev~vD~ 171 (177)
T cd02010 119 DSGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERALA----ADGVHVIDCPVDY 171 (177)
T ss_pred CCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECC
T ss_conf 53461899998999998798799989--99999999999984----8995999999862
No 57
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.26 E-value=2.7e-12 Score=98.95 Aligned_cols=115 Identities=22% Similarity=0.264 Sum_probs=83.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCCC---------
Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-3444443---------
Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTSV--------- 226 (364)
Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~~--------- 226 (364)
.+.+|..+|-|.|+++| ..++-+||+.|||+..-. ..| |..|..++||+++||.||+ |++--..
T Consensus 439 ~g~mG~~lpaAiGa~lA----~p~r~Vv~i~GDGsf~m~-~~E-L~Ta~r~~lpv~vvV~NN~~~g~~~~~q~~~~g~~~ 512 (581)
T PRK06112 439 LAGLGWGVPMAIGAKVA----RPGARVICLVGDGGFAHV-WAE-LETARRMGVPVTIVVLNNGILGFQKHAEEVKFGTHT 512 (581)
T ss_pred CCCCCCHHHHHHHHHHH----CCCCCEEEEECCCHHHCC-HHH-HHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCC
T ss_conf 66645206999999985----899968999886066435-999-999999787908999978631178899887508877
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf -232148643577777631111210000233688754210245545465589831566
Q gi|255764490|r 227 -SRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 227 -~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
.......++.+.|++||+++++|+ ++.++..++++|++ .+||+|||+.|-+
T Consensus 513 ~~~~~~~~df~~lA~a~G~~g~rV~--~~~eL~~Al~~A~~----~~gP~lIeV~vDp 564 (581)
T PRK06112 513 DACHFAAVDHVAIARACGCDGVRVE--DPASLAQALAAAEA----APGPFLIEVMTDP 564 (581)
T ss_pred CCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECC
T ss_conf 6676899999999987898699979--99999999999984----8993999998688
No 58
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.26 E-value=3.5e-12 Score=98.20 Aligned_cols=117 Identities=23% Similarity=0.367 Sum_probs=82.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCC-CCCCCC-----CCCC
Q ss_conf 7667466767432543100112334444331025665430245676544321140111022103-434444-----4323
Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENN-QYAMGT-----SVSR 228 (364)
Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN-~~aist-----~~~~ 228 (364)
+..|.+|..+|.|+|+++|. .++-+||++|||+..-. ..| |-.|..++||+++||-|| +|++-- ....
T Consensus 416 ~g~G~mG~glp~AiGaalA~----p~r~Vv~~~GDGsf~m~-~~e-L~Ta~r~~lpv~ivV~NN~~~g~i~~~q~~~~~~ 489 (564)
T PRK08155 416 GGLGTMGFGLPAAIGAALAN----PDRKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEALGLVHQQQSLFYKQ 489 (564)
T ss_pred CCCCCCCCCHHHHHHHHHHC----CCCCEEEEECCHHHHHH-HHH-HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCC
T ss_conf 87656666278999999848----99828999741786430-999-9999995979089999699850778898874088
Q ss_pred -C-----CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf -2-----148643577777631111210000233688754210245545465589831566
Q gi|255764490|r 229 -A-----SAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 229 -~-----~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
. ....++.+.|++||+++++|+. +.+...++++|+ +.+||+|||+.+-|
T Consensus 490 ~~~~~~~~~~~df~~~A~a~G~~~~~V~~--~~el~~al~~al----~~~gp~lIev~id~ 544 (564)
T PRK08155 490 RVFAATYPGKINFMQIAAGFGLETCDLNN--EADPQAALQEAI----NRPGPALIHVRIDA 544 (564)
T ss_pred CCCCCCCCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHH----CCCCCEEEEEEECC
T ss_conf 86554679998999999978997999699--999999999997----58994999999885
No 59
>PRK08266 hypothetical protein; Provisional
Probab=99.26 E-value=2.9e-12 Score=98.75 Aligned_cols=118 Identities=31% Similarity=0.444 Sum_probs=86.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCC--------
Q ss_conf 76674667674325431001123344443310256654302456765443211401110221034-344444--------
Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTS-------- 225 (364)
Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~-------- 225 (364)
+..|.+|.++|.|.|+++|. .++-++|+.|||+..-. ..| |..|..++||+++||-||+ |++-..
T Consensus 396 ~~~G~mG~glpaAiGa~lA~----p~~~Vv~i~GDG~f~~~-~~e-L~Ta~r~~lpi~ivV~NN~~yg~i~~~q~~~~~~ 469 (531)
T PRK08266 396 GYQGTLGYGFPTALGAKVAN----PDKAVVSITGDGGFMFG-VQE-LATAVQHNIGVVTLVFNNSAYGNVRRDQKRTFDG 469 (531)
T ss_pred CCCCCCCCCHHHHHHHHHHC----CCCCEEEEECCHHHHHH-HHH-HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCC
T ss_conf 88776555168999999859----89968999843687341-999-9999997869189999688326899999987089
Q ss_pred --CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf --32321486435777776311112100002336887542102455454655898315668
Q gi|255764490|r 226 --VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRY 284 (364)
Q Consensus 226 --~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~ 284 (364)
........++++.|++||+++++|+ ++.++.+++++|++ .+||+|||+.+.|-
T Consensus 470 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~v~~~ 524 (531)
T PRK08266 470 RVVASDLVNPDFVKLAESFGVPAFRVD--SPEELRAALEAALA----LGGPYLIEVPVPRG 524 (531)
T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECCC
T ss_conf 656787999999999997899799979--99999999999982----89919999994799
No 60
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.25 E-value=2e-12 Score=99.83 Aligned_cols=116 Identities=24% Similarity=0.365 Sum_probs=81.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC-----CC-CC
Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-34444-----43-23
Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT-----SV-SR 228 (364)
Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist-----~~-~~ 228 (364)
..|.+|-.+|-|.|+++|. .++-++|+.|||+..-. . -.|-.|..++||+++||-||+ |++-- .. .+
T Consensus 399 g~G~mG~glpaAiGA~lA~----p~r~Vv~i~GDGsf~m~-~-~EL~Ta~r~~lpv~ivV~NN~~~g~ir~~q~~~~~~~ 472 (548)
T PRK08978 399 GLGTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMMN-V-QELGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDER 472 (548)
T ss_pred CCCCCCCHHHHHHHHHHHC----CCCCEEEEECCHHHHHH-H-HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCC
T ss_conf 7776553588999988748----99988999895076452-9-9999999958995899996884078999999762898
Q ss_pred C-----CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 2-----148643577777631111210000233688754210245545465589831566
Q gi|255764490|r 229 A-----SAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 229 ~-----~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
. ...+++++.|++||+++++|+. +.++-.++++|+ +.+||+|||+.+-+
T Consensus 473 ~~~~~l~~~pdf~~lA~a~G~~g~rV~~--~~el~~al~~al----~~~~P~lIeV~vD~ 526 (548)
T PRK08978 473 YSETDLSDNPDFVMLASAFGIPGQTITR--KDQVEAALDTLL----NSEGPYLLHVSIDE 526 (548)
T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHH----HCCCCEEEEEEECC
T ss_conf 7767778998999999977997999699--999999999998----18996999999787
No 61
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.25 E-value=3.5e-12 Score=98.22 Aligned_cols=117 Identities=21% Similarity=0.346 Sum_probs=82.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCC-CCCCCC-------
Q ss_conf 367667466767432543100112334444331025665430245676544321140111022103-434444-------
Q gi|255764490|r 153 FYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENN-QYAMGT------- 224 (364)
Q Consensus 153 ~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN-~~aist------- 224 (364)
+.+.+|.+|.++|-|.|+++| ..++-+||+.|||+..-. . ..|..|..++||+++||-|| +|++--
T Consensus 393 ~~~~~G~mG~~lpaAiGaalA----~p~~~vv~i~GDGsf~m~-~-~EL~Ta~r~~lpi~ivV~NN~~yg~i~~~~~~~~ 466 (521)
T PRK07092 393 YTMASGGLGYGLPAAVGVALA----QPGRRVIGLIGDGSANYS-I-QALWSAAQLKLPVTFVILNNGRYGALRWFAPVFG 466 (521)
T ss_pred EECCCCCCCCCHHHHHHHHHH----CCCCEEEEEECCHHHHHH-H-HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHC
T ss_conf 855777644326899999983----999849999844598601-9-9999999968894899997871279999999846
Q ss_pred -CC--CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf -43--2321486435777776311112100002336887542102455454655898315
Q gi|255764490|r 225 -SV--SRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364)
Q Consensus 225 -~~--~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364)
+. ....+..++++.|++||+++++|+- +.++.+++++|+ +.+||+|||++.
T Consensus 467 ~~~~~~~~l~~~df~~iA~a~G~~g~~V~t--~~eL~~al~~A~----~~~gP~lIeV~V 520 (521)
T PRK07092 467 VRDVPGLDLPGLDFVALARGYGCEAVRVSD--AAELADALARAL----AADRPVLVEVEV 520 (521)
T ss_pred CCCCCCCCCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHH----HCCCCEEEEEEC
T ss_conf 899776749999999999977997999799--999999999998----389978999980
No 62
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.24 E-value=4.9e-12 Score=97.27 Aligned_cols=115 Identities=22% Similarity=0.337 Sum_probs=83.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC---------C
Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-34444---------4
Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT---------S 225 (364)
Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist---------~ 225 (364)
..|.+|-++|-|+|+++|. ++-+||+.|||+..-. .. .|-.|..++||+++||-||+ |++-. +
T Consensus 396 ~~g~mG~glpaaiGa~lA~-----~~~vv~i~GDGsf~m~-~~-EL~Ta~r~~lpv~ivV~NN~~yg~i~~~~~~~~~~~ 468 (549)
T PRK06457 396 WLGSMGIGIPGAVGASFAS-----DRQVIAIVGDGGFAMT-MM-ELITAKKYSRPVKIIIYNNSKLGMIKFEQEVMGYPE 468 (549)
T ss_pred CCCCCCCCHHHHHHHHHCC-----CCCEEEEECCCHHHCC-HH-HHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCC
T ss_conf 8777666417899998658-----9943699666077514-89-999999958996899997981168999999727997
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 3232148643577777631111210000233688754210245545465589831566
Q gi|255764490|r 226 VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 226 ~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
..-.....++++.|++||+++++|. ++.++..++++|++ .+||+|||+.+-+
T Consensus 469 ~g~~~~~~Df~~~A~a~G~~g~~V~--~~~el~~al~~A~~----~~gP~lIev~vdp 520 (549)
T PRK06457 469 WGVDLYNPDFSKLAESVGIKGFRVE--DPNELEEAIEEFLN----TEGPAVLDAVVDP 520 (549)
T ss_pred CCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHC----CCCCEEEEEEECC
T ss_conf 7785899899999997799799979--99999999999981----8995999999689
No 63
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.24 E-value=1.8e-12 Score=100.01 Aligned_cols=119 Identities=22% Similarity=0.266 Sum_probs=87.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCC-CCCCCCCCC-------
Q ss_conf 667466767432543100112334444331025665430245676544321140111022103-434444432-------
Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENN-QYAMGTSVS------- 227 (364)
Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN-~~aist~~~------- 227 (364)
..|.+|-.+|-|+|+++| ..++.+||+.|||+..=. . -.|..|..++||+++||-|| +|++--...
T Consensus 428 ~~G~mG~glpaAiGA~lA----~p~r~VV~i~GDG~f~m~-~-~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~q~~~~~~~ 501 (579)
T TIGR03457 428 SFGNCGYAFPTIIGAKIA----APDRPVVAYAGDGAWGMS-M-NEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNR 501 (579)
T ss_pred CCCCCCCHHHHHHHHHHH----CCCCCEEEEECCHHHHHH-H-HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 656654557999999984----899828999883787252-9-9999999978692899997864448999999870896
Q ss_pred ----CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf ----32148643577777631111210000233688754210245545465589831566
Q gi|255764490|r 228 ----RASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 228 ----~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
...+..++++.|++||+.+++|+ ++.++-.++++|++...+ ++|+|||+.+-|
T Consensus 502 ~~g~~~~~~~dfa~~A~a~G~~g~~V~--~~~el~~Al~~Ala~~~~-g~P~lIdV~vd~ 558 (579)
T TIGR03457 502 FVGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQAE-GKTTVIEIVCTR 558 (579)
T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHCCCC-CCCEEEEEEECC
T ss_conf 310236899998999997799799979--999999999999860899-996899999683
No 64
>PRK07449 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; Validated
Probab=99.24 E-value=3.3e-12 Score=98.36 Aligned_cols=115 Identities=21% Similarity=0.243 Sum_probs=79.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC--------C
Q ss_conf 76674667674325431001123344443310256654302456765443211401110221034-34444--------4
Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT--------S 225 (364)
Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist--------~ 225 (364)
|.+|+-| .+|-|.|+++|. ++-+||+.|||+..-+ ...|..|..+++|+++||.||+ |+|-- .
T Consensus 404 G~~Gi~G-~l~aAiGa~~a~-----~~~vv~i~GDGsf~~~--~~eL~Ta~~~~lpv~ivV~NN~gggi~~~l~~~~~~~ 475 (548)
T PRK07449 404 GASGIDG-LLSTAAGVARAS-----GKPTVALIGDLSFLHD--LNGLLLLKQESGPLTIVVVNNNGGGIFELLPVPEEEV 475 (548)
T ss_pred CCCCCCC-HHHHHHHHHHCC-----CCCEEEEECCHHHHHC--HHHHHHHHHCCCCCEEEEEECCCCCEEEECCCCCHHH
T ss_conf 6567686-078999997578-----9988999554587604--5799999866999589999799998333310011354
Q ss_pred CCCCC---CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 32321---48643577777631111210000233688754210245545465589831566
Q gi|255764490|r 226 VSRAS---AQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 226 ~~~~~---~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
.++.+ ...++.+.|++||+++++|+ ++.++.+++++|++ ..||+|||+.|-|
T Consensus 476 ~~~~~~~p~~~Df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~gP~lIeV~vD~ 530 (548)
T PRK07449 476 FERFFGTPHGVDFEHAAAMYGLEYHRPE--TWAELEEALDDALR----TPGLTVIEVKTNR 530 (548)
T ss_pred HHHHHCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEECCH
T ss_conf 5343158899899999997799399859--99999999999983----8998899998983
No 65
>PRK07586 hypothetical protein; Validated
Probab=99.23 E-value=5.4e-12 Score=96.99 Aligned_cols=112 Identities=26% Similarity=0.357 Sum_probs=77.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC----------C
Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-34444----------4
Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT----------S 225 (364)
Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist----------~ 225 (364)
.|.+|-.+|-|.|+++| ..++.+||+.|||+..=. ..| |-.|+.++||+++||-||+ |++-- +
T Consensus 384 ~g~mG~glpaAiGa~lA----~P~r~Vv~i~GDG~f~m~-~~E-L~Ta~r~~lpii~vV~NN~~yg~i~~~~~~~g~~~~ 457 (514)
T PRK07586 384 GGAIGQGLPLAVGAAVA----CPDRKVIALQGDGSAMYT-VQA-LWTQARENLDVTTVIFANRAYAILRGELARVGAGNP 457 (514)
T ss_pred CCCCCCCHHHHHHHHHH----CCCCEEEEEECCCHHHCC-HHH-HHHHHHHCCCEEEEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 86314527899999975----888708999468103026-999-999999688908999978604789999998326777
Q ss_pred CC-------CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf 32-------32148643577777631111210000233688754210245545465589831
Q gi|255764490|r 226 VS-------RASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEML 280 (364)
Q Consensus 226 ~~-------~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ 280 (364)
.. ...+..++++.|++||+++++|+. +.++-.++++|++ .+||+|||+.
T Consensus 458 g~~~~~~~~~~~P~~Dfa~iA~a~G~~g~~V~~--~~el~~Al~~a~~----~~gP~lIev~ 513 (514)
T PRK07586 458 GPRALDMLDLGDPDLDWVALAEGMGVPARRVTT--AEEFADALARALA----EPGPHLIEAV 513 (514)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHHC----CCCCEEEEEE
T ss_conf 753001024789998999999978997999799--9999999999972----8996799997
No 66
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.23 E-value=4.4e-12 Score=97.59 Aligned_cols=117 Identities=21% Similarity=0.349 Sum_probs=84.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCCC--------
Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-3444443--------
Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTSV-------- 226 (364)
Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~~-------- 226 (364)
..|.+|-.+|-|.|+++|. .++-+||+.|||+..-. ..| |-.|..++||+++||-||+ |++--..
T Consensus 419 ~~g~mG~~lpaAiGa~lA~----p~r~Vv~i~GDGsf~m~-~qE-L~Tavr~~lpv~iiV~NN~~yg~i~~~q~~~~~g~ 492 (572)
T PRK08979 419 GLGTMGFGLPAAMGVKMAM----PDETVVCVTGDGSIQMN-IQE-LSTALQYDIPVKIINLNNRFLGMVKQWQDMIYSGR 492 (572)
T ss_pred CCCCCCCCHHHHHHHHHHC----CCCCEEEEECCHHHHHH-HHH-HHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCC
T ss_conf 8753235408999999858----99968999882798777-999-99999978894899997970059999999860886
Q ss_pred ---CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf ---232148643577777631111210000233688754210245545465589831566
Q gi|255764490|r 227 ---SRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 227 ---~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
......+++++.|++||+++++|+ ++.++-.++++|++ ...+|+|||+.+-+
T Consensus 493 ~~~~~~~~~pdf~~~A~a~G~~g~rV~--~~~el~~Al~~Al~---~~~~p~lieV~vd~ 547 (572)
T PRK08979 493 HSHSYMDSVPDFAKIAEAYGHVGMTIS--DPAELESGLAKALA---MKDRLVFVDINVDE 547 (572)
T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH---CCCCEEEEEEEECC
T ss_conf 676677899999999997799899979--99999999999985---76983999999899
No 67
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.22 E-value=4.7e-12 Score=97.42 Aligned_cols=117 Identities=21% Similarity=0.353 Sum_probs=82.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC-----C----
Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-34444-----4----
Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT-----S---- 225 (364)
Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist-----~---- 225 (364)
..|.+|-.+|-|.|+++| ..++-+||+.|||+..-. ..| |-.|..++||+++||-||+ |++-- .
T Consensus 421 ~~G~mG~glpaAiGA~lA----~p~r~Vv~i~GDG~f~mt-~qE-L~Ta~r~~lpv~ivV~NN~~yg~ir~~q~~~~~~~ 494 (574)
T PRK06466 421 GLGTMGFGLPAAMGVKLA----FPDQDVVCVTGEGSIQMN-IQE-LSTCLQYGLPVKIINLNNGALGMVRQWQDMNYEGR 494 (574)
T ss_pred CCCCCCCCHHHHHHHHHH----CCCCCEEEEECHHHHHHH-HHH-HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCC
T ss_conf 886423332999999985----899838999750698765-999-99999959995899997995169999999752886
Q ss_pred --CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf --3232148643577777631111210000233688754210245545465589831566
Q gi|255764490|r 226 --VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 226 --~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
.......+++++.|++||+++++|+.. .++-.++++|+.. .++|+|||+.+-+
T Consensus 495 ~~~~~~~~~pdf~~lA~a~G~~g~rv~~~--~el~~al~~al~~---~~~p~lIeV~vd~ 549 (574)
T PRK06466 495 HSHSYMESLPDFVKLAEAYGHVGIRITDL--KDLKPKLEEAFAM---KDRLVFIDIYVDR 549 (574)
T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEECCH--HHHHHHHHHHHHC---CCCCEEEEEEECC
T ss_conf 66556689999999999779879997999--9999999999852---5992999999898
No 68
>pfam02775 TPP_enzyme_C Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.
Probab=99.22 E-value=3.3e-12 Score=98.42 Aligned_cols=113 Identities=27% Similarity=0.474 Sum_probs=83.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCC--------
Q ss_conf 76674667674325431001123344443310256654302456765443211401110221034-344444--------
Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTS-------- 225 (364)
Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~-------- 225 (364)
+..+.+|..+|.|.|+++| +.++.++|+.|||+..-.. . .|..|..+++|+++||-||+ |++-..
T Consensus 25 ~~~g~mG~~~p~AiGa~~a----~p~~~vi~i~GDG~f~~~~-~-el~Ta~~~~~~i~~iv~nN~~yg~~~~~q~~~~~~ 98 (150)
T pfam02775 25 GGLGTMGYGLPAAIGAKLA----RPDRPVVAIAGDGGFQMNG-Q-ELATAVRYNLPITVVVLNNGGYGMTRGQQTPFGGK 98 (150)
T ss_pred CCCCHHHHHHHHHHHHHHH----CCCCEEEEEECCCCHHCCC-C-HHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCC
T ss_conf 9873232289999999997----8998499998897211134-3-79999984888568999764258889998874299
Q ss_pred ----CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf ----323214864357777763111121000023368875421024554546558983
Q gi|255764490|r 226 ----VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEM 279 (364)
Q Consensus 226 ----~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~ 279 (364)
........++++.+++||+++.+|+ +..++.+++++|+ +.+||+|||+
T Consensus 99 ~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~----~~~gP~~ieV 150 (150)
T pfam02775 99 RYSGPDGDLPPVDFAKLAEAYGAKGARVE--SPEELEEALKEAL----AHDGPALIDV 150 (150)
T ss_pred CCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHH----HCCCCEEEEC
T ss_conf 74565678888789999998598699978--9999999999998----2899989959
No 69
>PRK08199 acetolactate synthase 2 catalytic subunit; Validated
Probab=99.21 E-value=6.5e-12 Score=96.52 Aligned_cols=117 Identities=17% Similarity=0.258 Sum_probs=82.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCC-----CC----
Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-3444-----44----
Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMG-----TS---- 225 (364)
Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~ais-----t~---- 225 (364)
.+|.+|..+|-|.|+++| ..++-++|+.|||+..-. .. .|-.|..++||+++||-||+ |++- ..
T Consensus 407 ~~GsmG~glpaAiGa~la----~p~r~Vv~i~GDG~f~m~-~~-eL~Ta~~~~lpv~ivV~NN~~yg~i~~~q~~~~~~r 480 (553)
T PRK08199 407 TSGSMGYGLPAAIAAKLL----YPERTVVAFAGDGCFLMN-GQ-ELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGR 480 (553)
T ss_pred CCCCCCCHHHHHHHHHHH----CCCCEEEEEECCHHHHHH-HH-HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCC
T ss_conf 898643228899999982----999818999886276541-99-999999978796899996895179999999746996
Q ss_pred -CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf -32321486435777776311112100002336887542102455454655898315668
Q gi|255764490|r 226 -VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRY 284 (364)
Q Consensus 226 -~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~ 284 (364)
........+++..|++||+++++|+ ++.++-+++++|+. .+||+|||+.+-|-
T Consensus 481 ~~~~~l~~~df~~lA~a~G~~~~~V~--~~~el~~al~~a~~----~~gp~lIeV~vd~~ 534 (553)
T PRK08199 481 VSGTDLTNPDFAALARAYGGHGERVE--RTEDFAPAFERALA----SGKPALIEIRIDPE 534 (553)
T ss_pred CCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECCC
T ss_conf 45586999899999997799799969--99999999999985----89959999997866
No 70
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.20 E-value=9e-12 Score=95.61 Aligned_cols=116 Identities=21% Similarity=0.345 Sum_probs=80.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCC-CCCCCC----------
Q ss_conf 667466767432543100112334444331025665430245676544321140111022103-434444----------
Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENN-QYAMGT---------- 224 (364)
Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN-~~aist---------- 224 (364)
..|.+|..+|-|.|+++| ..++-+||+.|||+..-.. ..|-.|..++||+++||-|| +|++--
T Consensus 416 ~~g~mG~glpaAiGA~lA----~p~r~Vv~i~GDG~f~m~~--qEL~Ta~~~~lpv~ivV~NN~~yg~i~~~q~~~~~~~ 489 (566)
T PRK07282 416 GLGTMGFGIPAAIGAKIA----NPDKEVILFVGDGGFQMTN--QELAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEGR 489 (566)
T ss_pred CCCCCCCCHHHHHHHHHH----CCCCCEEEEECCCHHHCCH--HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCC
T ss_conf 877766612899999982----8999689996680554148--9999999958996899996883069999999860897
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf -432321486435777776311112100002336887542102455454655898315668
Q gi|255764490|r 225 -SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRY 284 (364)
Q Consensus 225 -~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~ 284 (364)
+...-...+++++.|++||+++++|+. +.++-+++ +|+. ..||+|||+.+-|-
T Consensus 490 ~~~~~~~~~pdf~~iA~a~G~~~~rv~~--~~eL~~aL-ea~~----~~~P~lIeV~vd~~ 543 (566)
T PRK07282 490 TSESVFDTLPDFQLMAQAYGIKHYKFDN--PETLAQDL-EVIT----EDVPMLIEVDISRK 543 (566)
T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEECC--HHHHHHHH-HHHC----CCCCEEEEEEECCC
T ss_conf 6765668999999999977987999899--99999999-9877----89989999997899
No 71
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.19 E-value=2.3e-11 Score=92.93 Aligned_cols=117 Identities=24% Similarity=0.283 Sum_probs=82.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC----------
Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-34444----------
Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT---------- 224 (364)
Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist---------- 224 (364)
..|.+|-.+|-|.|+++| ..++-+||+.|||+..-.. .| |..|..++||+++||-||+ |++-.
T Consensus 46 g~g~MG~~lPaAiGA~lA----~Pdr~Vv~i~GDG~f~m~~-~E-L~Tavr~~lpv~~vV~NN~~yg~i~~~Q~~~~~~~ 119 (205)
T cd02003 46 GYSCMGYEIAAGLGAKLA----KPDREVYVLVGDGSYLMLH-SE-IVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSGS 119 (205)
T ss_pred CCHHHHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCCH-HH-HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCC
T ss_conf 740688999999999985----8998289997674111520-48-99999829954699998994289999999744676
Q ss_pred ---CC----------CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf ---43----------2321486435777776311112100002336887542102455454655898315668
Q gi|255764490|r 225 ---SV----------SRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRY 284 (364)
Q Consensus 225 ---~~----------~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~ 284 (364)
.. .......++++.|++||+++++|+ ++.++-.++++|++ .+||+|||+.+-.-
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~Df~~~A~a~G~~g~~V~--~~~eL~~Al~~Al~----~~gP~vIev~vdP~ 186 (205)
T cd02003 120 FGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAKA----SDRTTVIVIKTDPK 186 (205)
T ss_pred CCCEEECCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECCC
T ss_conf 331110145655556777789889999987497089938--88999999999996----89969999993799
No 72
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.19 E-value=8.2e-12 Score=95.84 Aligned_cols=116 Identities=22% Similarity=0.287 Sum_probs=80.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCC----------
Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-344444----------
Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTS---------- 225 (364)
Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~---------- 225 (364)
.|.+|-.+|-|.|+++| ..++.+||+.|||+..-. ..| |-.|..++||+++||.||+ |++--.
T Consensus 446 ~GsmG~glPaAiGA~lA----~P~r~Vv~i~GDGsf~mt-~qE-L~Tavr~~lpi~ivV~NN~~yg~Ir~~Q~~~~~~~~ 519 (612)
T PRK07789 446 LGTMGYAVPAAMGAKVG----RPDKEVWAIDGDGCFQMT-NQE-LATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERY 519 (612)
T ss_pred CCHHHHHHHHHHHHHHH----CCCCCEEEEECCHHHHHH-HHH-HHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 54488899999999986----899938999853686332-999-999999689948999968830689999998708875
Q ss_pred --CCCC---CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf --3232---148643577777631111210000233688754210245545465589831566
Q gi|255764490|r 226 --VSRA---SAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 226 --~~~~---~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
+... ...+++++.|++||+++++|+ ++.++-.++++|++. ..||+|||+.+-+
T Consensus 520 ~~~~~~~~~~~~PDf~~lA~a~G~~g~rv~--~~~el~~al~~Al~~---~d~P~lIdv~vdp 577 (612)
T PRK07789 520 SNTDLNTGSHRIPDFVKLAEALGCVGLRCE--REEDVDAVIEKARAI---NDRPVVIDFVVGA 577 (612)
T ss_pred CCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHC---CCCCEEEEEEECC
T ss_conf 655467687889899999997798799979--999999999999855---9995899999898
No 73
>PRK08273 pyruvate decarboxylase; Provisional
Probab=99.19 E-value=8.5e-12 Score=95.77 Aligned_cols=116 Identities=26% Similarity=0.434 Sum_probs=79.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHC-----CCHHHHHHHCCC-CCCCC---
Q ss_conf 766746676743254310011233444433102566543-02456765443211-----401110221034-34444---
Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAAN-QGQVYESFNIAALW-----NLNVIYVIENNQ-YAMGT--- 224 (364)
Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~-eG~f~Ealn~A~~~-----~lPvifvvenN~-~aist--- 224 (364)
+..|.+|.++|.|.|+++| ..++.+||+.|||+.. .| ..| |-.|+.+ ++|+++||-||+ |++-.
T Consensus 412 g~~gsMG~glPaAIGA~lA----~P~r~Vv~i~GDG~f~M~~-~~E-L~Ta~ry~~~~~~lpvvvvV~NN~~~g~i~~~q 485 (597)
T PRK08273 412 GGLATMGPAVPYAIAAKFA----HPDRPVIALVGDGAMQMNG-MAE-LITVAKYWRQWADPRLIVLVLNNRDLNQVTWEQ 485 (597)
T ss_pred CCCCCCCCHHHHHHHHHHH----CCCCCEEEEECCCHHHHCH-HHH-HHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHH
T ss_conf 8766645078999999985----8999589998161576350-889-999999764014899799998185157999999
Q ss_pred ------C---CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf ------4---323214864357777763111121000023368875421024554546558983156
Q gi|255764490|r 225 ------S---VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTY 282 (364)
Q Consensus 225 ------~---~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ty 282 (364)
+ .....+..++++.|++||+++++|+ ++.++-.++++|++ ..||+|||+.|-
T Consensus 486 ~~~~g~~~~~~~~~lp~~d~a~~A~a~G~~g~rV~--~~~el~~Al~~Al~----~~~P~lIeV~~D 546 (597)
T PRK08273 486 RVMEGDPKFEASQQLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEALA----ADRPVVLEVKTD 546 (597)
T ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEECC
T ss_conf 98458877676456899999999997899799989--99999999999984----899789999718
No 74
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.19 E-value=4.9e-12 Score=97.30 Aligned_cols=113 Identities=26% Similarity=0.381 Sum_probs=80.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCC----------
Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-344444----------
Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTS---------- 225 (364)
Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~---------- 225 (364)
.|.+|-.+|.|.|+++| ..++.++|+.|||+..-. .. .|..|..+++|+++||-||+ |++-.-
T Consensus 48 ~g~mG~~~paAiGa~lA----~p~r~vv~i~GDG~f~m~-~~-eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~~~ 121 (178)
T cd02002 48 GGGLGWGLPAAVGAALA----NPDRKVVAIIGDGSFMYT-IQ-ALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGP 121 (178)
T ss_pred CCHHHHHHHHHHHHHHH----CCCCEEEEEECCCCCCCC-CH-HHEEEHHHCCCEEEEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 85376799999999985----989829999789731155-22-2100014179979999979830899999999737777
Q ss_pred -------CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf -------32321486435777776311112100002336887542102455454655898315
Q gi|255764490|r 226 -------VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364)
Q Consensus 226 -------~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364)
.....+..++++.|++||+++++|+. +.++.+++++|++ .+||+|||+..
T Consensus 122 ~~~~~~~~~~~~p~~d~~~iA~a~G~~~~~v~~--~~el~~al~~a~~----~~~p~vIev~V 178 (178)
T cd02002 122 GENAPDGLDLLDPGIDFAAIAKAFGVEAERVET--PEELDEALREALA----EGGPALIEVVV 178 (178)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECC--HHHHHHHHHHHHH----CCCCEEEEEEC
T ss_conf 766555556778998999999983994899789--9999999999983----89968999989
No 75
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.18 E-value=1.4e-11 Score=94.36 Aligned_cols=117 Identities=22% Similarity=0.341 Sum_probs=83.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCC-----CC--
Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-344444-----32--
Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTS-----VS-- 227 (364)
Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~-----~~-- 227 (364)
..|.+|..+|-|+|+++|. .++-+||+.|||+..-. . ..|-.|..++||+++||-||+ |++--. .+
T Consensus 413 ~~G~mG~~lpaAiGa~lA~----p~r~vv~i~GDG~f~m~-~-~EL~Ta~r~~lpv~ivV~NN~~~g~i~~~q~~~~~~~ 486 (560)
T PRK08527 413 GLGTMGYGLPAALGAKLAV----PEKVVINFTGDGSILMN-I-QELMTAVEYGIPVINIILNNNFLGMVRQWQTFFYEER 486 (560)
T ss_pred CCCCCCCCHHHHHHHHHHC----CCCCEEEEECCHHHHHH-H-HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCC
T ss_conf 8667787138999988748----99968999781798665-9-9999999968895899996995189999999861888
Q ss_pred ----CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf ----321486435777776311112100002336887542102455454655898315668
Q gi|255764490|r 228 ----RASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRY 284 (364)
Q Consensus 228 ----~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~ 284 (364)
.-....++++.|++||+++++|+ ++.++-.++++|++ .+||+|||+.+-|.
T Consensus 487 ~~~~d~~~~pdf~~~A~a~G~~g~~V~--~~~el~~Al~~a~~----~~~p~lIeV~vd~~ 541 (560)
T PRK08527 487 YSQTDLSTQPDFVKLAEGFGGIGFRVT--TKEEFDKALKQALK----SDKVSLIDVKIDRF 541 (560)
T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECCC
T ss_conf 776788899899999997899899969--99999999999981----89939999996798
No 76
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.18 E-value=1e-11 Score=95.23 Aligned_cols=118 Identities=20% Similarity=0.375 Sum_probs=83.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC---------
Q ss_conf 76674667674325431001123344443310256654302456765443211401110221034-34444---------
Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT--------- 224 (364)
Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist--------- 224 (364)
+..|.+|-.+|-|.|+++| ..++-+||+.|||+..-. .. .|-.|..++||+++||-||+ |++--
T Consensus 418 ~~~GsmG~glpaAiGA~lA----~p~~~Vv~i~GDG~f~m~-~q-EL~Tavr~~lpv~ivV~NN~~yg~i~~~q~~~~~g 491 (574)
T PRK06882 418 GGAGTMGFGLPAAIGVKFA----HPEGTVVCVTGDGSIQMN-IQ-ELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSG 491 (574)
T ss_pred CCCCCCCCCHHHHHHHHHH----CCCCCEEEEECCHHHHHH-HH-HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCC
T ss_conf 9874423223899999985----899858999882798655-99-99999996899589999798542999999986089
Q ss_pred CCC--CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 432--32148643577777631111210000233688754210245545465589831566
Q gi|255764490|r 225 SVS--RASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 225 ~~~--~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
... .....+++++.|++||+++++|+. ..++-.++++|+.. ..+|+|||+.+-+
T Consensus 492 ~~~~~~~~~~pDf~~lA~a~G~~g~rV~~--~~eL~~al~~Al~~---~~~p~lidV~iD~ 547 (574)
T PRK06882 492 RHSQVYMNSLPDFAKLAEAYGHVGIQIDT--PDELEEKLTQAFSI---KDKLVFVDVNVDE 547 (574)
T ss_pred CCCCCCCCCCCCHHHHHHHCCCEEEEECC--HHHHHHHHHHHHHC---CCCCEEEEEEECC
T ss_conf 76755678999999999978997999799--99999999999855---7990999999898
No 77
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.17 E-value=1.4e-11 Score=94.35 Aligned_cols=116 Identities=21% Similarity=0.367 Sum_probs=83.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCCCC------C
Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-34444432------3
Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTSVS------R 228 (364)
Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~~~------~ 228 (364)
..|.+|..+|-|.|+++| ..++-+||+.|||+..-.. ..|-.|..++||+++||-||+ |++--..+ +
T Consensus 417 g~GsmG~glpaAiGA~lA----~pdr~Vv~i~GDGsf~m~~--qEL~Tavr~~lpv~ivV~NN~~yg~i~~~q~~~~~~~ 490 (586)
T PRK06276 417 GLGTMGFGFPAAIGAKVA----RPDANVIAVTGDGGFLMNS--QELATIAEYDIPVIVVIFDNRTLGMVYQWQNLYYGKR 490 (586)
T ss_pred CCCCCCCCHHHHHHHHHH----CCCCCEEEEECCHHHHHHH--HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCC
T ss_conf 877754547999999985----8999689998856875509--9999999978894899997872059999999862886
Q ss_pred CC-----CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 21-----48643577777631111210000233688754210245545465589831566
Q gi|255764490|r 229 AS-----AQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 229 ~~-----~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
.. ..+++++.|++||+++++|+ ++.++-.++++|+ +.+||+|||+.+-+
T Consensus 491 ~~~~~~~~~pDf~~lA~a~G~~g~rV~--~~~el~~Al~~A~----~~~gP~lIeV~vDp 544 (586)
T PRK06276 491 QSAVHLGETPDFVKLAESYGVDALRIE--KPGEINEALKTAI----NSGEPYLLDIIIDP 544 (586)
T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHH----HCCCCEEEEEEECH
T ss_conf 665667999999999997799799979--9999999999998----08997899999560
No 78
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.17 E-value=1e-11 Score=95.31 Aligned_cols=116 Identities=28% Similarity=0.460 Sum_probs=83.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCC---------C-
Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-3444---------4-
Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMG---------T- 224 (364)
Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~ais---------t- 224 (364)
..|.+|-.+|.|.|+++|. .++-+||+.|||+..-. ..| |..|+.+++|+++||-||+ |++- .
T Consensus 48 ~~g~mG~~lpaAIGa~la~----p~r~vv~i~GDG~f~m~-~~E-L~Ta~~~~lpi~~iV~NN~~~g~i~~~q~~~~~~~ 121 (186)
T cd02015 48 GLGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQMN-IQE-LATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGR 121 (186)
T ss_pred CCCHHHHHHHHHHHHHHHC----CCCEEEEEECCCHHHCC-HHH-HHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCC
T ss_conf 8735665999999999868----99818999767077503-599-99999866994799998970688999999972897
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf -43232148643577777631111210000233688754210245545465589831566
Q gi|255764490|r 225 -SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 225 -~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
.........++++.|++||+++++|+ ++.++-+++++|+ +.+||+|||+++-+
T Consensus 122 ~~~~~~~~~pd~~~iA~a~G~~~~~v~--~~~el~~al~~a~----~~~gP~lieV~idp 175 (186)
T cd02015 122 YSHTTLDSNPDFVKLAEAYGIKGLRVE--KPEELEAALKEAL----ASDGPVLLDVLVDP 175 (186)
T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHH----HCCCCEEEEEEECC
T ss_conf 666567888776899997597699978--9999999999998----48997999999889
No 79
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.17 E-value=8.3e-12 Score=95.84 Aligned_cols=117 Identities=25% Similarity=0.370 Sum_probs=84.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC---------
Q ss_conf 76674667674325431001123344443310256654302456765443211401110221034-34444---------
Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT--------- 224 (364)
Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist--------- 224 (364)
+..|.+|-.+|-|.|+++|. .++-++|+.|||+..-. ..| |..|..+++|+++||-||+ |++-.
T Consensus 48 ~~~g~mG~glpaAiGa~la~----p~~~Vv~i~GDG~f~m~-~~E-l~Ta~~~~lpi~~vV~nN~~~g~i~~~q~~~~~~ 121 (178)
T cd02014 48 GLLATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQP 121 (178)
T ss_pred CCCCHHHHHHHHHHHHHHHC----CCCEEEEEECCCHHHCC-HHH-HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCC
T ss_conf 88653778999999999848----99808999777067406-189-9989985898139999896158999999985799
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 43232148643577777631111210000233688754210245545465589831566
Q gi|255764490|r 225 SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 225 ~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
.........++.+.|++||+++++|+ ++.+.-+++++|++ .+||+|||+.+-+
T Consensus 122 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gP~lieV~vdp 174 (178)
T cd02014 122 EFGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEALA----ADGPVVIDVVTDP 174 (178)
T ss_pred CCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEECCC
T ss_conf 75253799988999997697079978--99999999999996----8997999998089
No 80
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.16 E-value=3.3e-11 Score=91.95 Aligned_cols=118 Identities=21% Similarity=0.245 Sum_probs=81.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCC----C------
Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-3444----4------
Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMG----T------ 224 (364)
Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~ais----t------ 224 (364)
..|.+|.++|.|+|++.+ .++-+||+.|||+..-. . ..|-.|..++||+++||-||+ |... .
T Consensus 425 ~~g~mG~glp~AigA~l~-----~~r~Vv~i~GDGsf~m~-~-~EL~Ta~r~~lpviivV~NN~g~~~~~~~~~~~~~~~ 497 (572)
T PRK09259 425 TWGVMGIGMGYAIAAAVE-----TGKPVVAIEGDSAFGFS-G-MEIETICRYNLPVTVVIFNNGGIYRGDGVDPSGAGDP 497 (572)
T ss_pred CCCCCCCCHHHHHHHHHC-----CCCCEEEEECCCCCCCC-H-HHHHHHHHHCCCEEEEEEECHHHHHHHHHHHCCCCCC
T ss_conf 765566557999986446-----89958999758412577-8-9999999829991899993838999999986058877
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 43232148643577777631111210000233688754210245545465589831566887
Q gi|255764490|r 225 SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRG 286 (364)
Q Consensus 225 ~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~g 286 (364)
......+..++.+.|++||+++++|+ ++.++-.++++|++ .+||+|||+.+-.--+
T Consensus 498 ~~~~~~~~~df~~lA~a~G~~g~~V~--~~~eL~~Al~~A~~----~~~P~lIeV~iDP~~~ 553 (572)
T PRK09259 498 APTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAIA----SGKPTLINAVIDPAAG 553 (572)
T ss_pred CCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECCCCC
T ss_conf 74124789999999996899799979--99999999999983----8994899998289989
No 81
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.15 E-value=1.4e-11 Score=94.44 Aligned_cols=115 Identities=25% Similarity=0.382 Sum_probs=83.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC---------
Q ss_conf 76674667674325431001123344443310256654302456765443211401110221034-34444---------
Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT--------- 224 (364)
Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist--------- 224 (364)
+..|.+|-.+|.|.|+++|. .++.++|+.|||+..-. . ..|..|..++||+++||-||+ |+...
T Consensus 45 ~~~g~mG~~lpaaiGa~lA~----p~~~Vv~i~GDG~f~m~-~-~EL~Ta~~~~lpi~~iV~nN~~~~~i~~~q~~~~~~ 118 (172)
T cd02004 45 GTFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFGFS-G-MELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGL 118 (172)
T ss_pred CCCCHHHHHHHHHHHHHHHC----CCCEEEEEECCCCHHCC-C-HHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCC
T ss_conf 98764777999999999978----99849999779734024-0-788899984988599998288328999998987268
Q ss_pred --CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf --432321486435777776311112100002336887542102455454655898315
Q gi|255764490|r 225 --SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364)
Q Consensus 225 --~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364)
.........++++.|++||+++++|+ ++.++-+++++|++ .++|+|||+.+
T Consensus 119 ~~~~~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i 171 (172)
T cd02004 119 GLPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRALA----SGKPALINVII 171 (172)
T ss_pred CCCCEECCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEC
T ss_conf 9874321899877899997598289978--99999999999995----89969999981
No 82
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.14 E-value=2.2e-11 Score=93.15 Aligned_cols=116 Identities=18% Similarity=0.260 Sum_probs=79.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCC--CCCC----C
Q ss_conf 6674667674325431001123344443310256654302456765443211401110221034-3444--4432----3
Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMG--TSVS----R 228 (364)
Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~ais--t~~~----~ 228 (364)
..|.+|-++|-|.|+++| ..++-+||+.|||+..-. ..| |-.|..++||++|||.||+ |++- .... .
T Consensus 402 ~~G~mG~glPaAIGA~lA----~P~r~Vv~i~GDG~f~m~-~~E-L~Tavr~~lpi~~vV~NN~~yg~~r~~~~~~~~~~ 475 (539)
T TIGR03393 402 LWGSIGYTLPAAFGAQTA----CPNRRVILLIGDGSAQLT-IQE-LGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYN 475 (539)
T ss_pred CCCCCCCHHHHHHHHHHH----CCCCCEEEEECCHHHHHH-HHH-HHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCCC
T ss_conf 764010178999999983----989948999840587763-999-99999819896899997882389988744776667
Q ss_pred CCCCCCHHHHHHHHHHHH----HHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 214864357777763111----1210000233688754210245545465589831566
Q gi|255764490|r 229 ASAQTNFSKRGVSFNIPG----MQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 229 ~~~~~~i~~ra~~~gi~~----~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
.....++.+.+++||..+ ++|. |+.++-.++++|+ +.+||+|||+.+-+
T Consensus 476 ~~~~~~~~~~a~a~g~~g~~~~~rV~--~~~eL~~al~~a~----~~~~P~lIeV~v~~ 528 (539)
T TIGR03393 476 DIALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVA----AHERLSLIEVVLPK 528 (539)
T ss_pred CCCCCCHHHHHHHCCCCCCCCEEEEC--CHHHHHHHHHHHH----HCCCCEEEEEECCC
T ss_conf 78889978999976998862248868--9999999999998----67997899998574
No 83
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.14 E-value=3.5e-11 Score=91.80 Aligned_cols=116 Identities=19% Similarity=0.318 Sum_probs=81.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC-----C-----
Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-34444-----4-----
Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT-----S----- 225 (364)
Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist-----~----- 225 (364)
.|.+|-.+|-|.|+++| ..++-+||+.|||+..-. +.| |-.|..++||+++||-||+ |++-- .
T Consensus 436 ~G~mG~glpaAiGA~lA----~p~r~Vv~i~GDGsf~mt-~qE-L~Ta~r~~lpi~iiV~NN~~yg~ir~~q~~~~~~~~ 509 (587)
T PRK06965 436 LGTMGVGLPYAMGVKMA----HPDDDVVCITGEGSIQMC-IQE-LSTCLQYDTPVKIISLNNRYLGMVRQWQQIEYSKRY 509 (587)
T ss_pred CCCCCHHHHHHHHHHHH----CCCCCEEEEECCHHHHHH-HHH-HHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 75400056899999985----899958999884588765-999-999999689928999958723599999998718976
Q ss_pred -CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf -3232148643577777631111210000233688754210245545465589831566
Q gi|255764490|r 226 -VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 226 -~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
.......+++++.|++||+.+++|+ ++.++-.++++|++ ...+|+|||+.+-+
T Consensus 510 ~~~~~~~~Pdf~~lA~a~G~~g~~V~--~~~eL~~al~~Al~---~~~~p~lidV~iDp 563 (587)
T PRK06965 510 SHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALKEALR---LKDRTVFLDFQTDP 563 (587)
T ss_pred CCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH---CCCCCEEEEEEECC
T ss_conf 65577899899999997799899979--99999999999986---48980999999789
No 84
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.12 E-value=1.5e-11 Score=94.14 Aligned_cols=118 Identities=24% Similarity=0.389 Sum_probs=85.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCCCCCCCCC-
Q ss_conf 76674667674325431001123344443310256654302456765443211401110221034-3444443232148-
Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTSVSRASAQ- 232 (364)
Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~~~~~~~~- 232 (364)
+..|.+|.++|.|+|++++. .++.++|+.|||+..=. . .-|..|..+++|+++||.||+ |++--...+....
T Consensus 405 ~~~GtMG~glPaAIGAkla~----P~r~Vv~i~GDG~F~m~-~-qEL~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~ 478 (550)
T COG0028 405 GGLGTMGFGLPAAIGAKLAA----PDRKVVAIAGDGGFMMN-G-QELETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGG 478 (550)
T ss_pred CCCCCCCCHHHHHHHHHHHC----CCCCEEEEECCCHHHCC-H-HHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHCCC
T ss_conf 99861112489999988638----99828999702368507-9-899999986899799999784434508998873477
Q ss_pred --------CC-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf --------64-35777776311112100002336887542102455454655898315668
Q gi|255764490|r 233 --------TN-FSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRY 284 (364)
Q Consensus 233 --------~~-i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~ 284 (364)
.. +.+.|++||+++++|+ ++.++..++++|++ ..+|+||++.+-+-
T Consensus 479 ~~~~~~~~~~~f~klAea~G~~g~rv~--~~~el~~al~~al~----~~~p~lidv~id~~ 533 (550)
T COG0028 479 RYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEALA----SDGPVLIDVVVDPE 533 (550)
T ss_pred CCCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEECCC
T ss_conf 855111588768999997798259968--88999999999970----79988999983776
No 85
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.12 E-value=6.3e-11 Score=90.19 Aligned_cols=158 Identities=20% Similarity=0.229 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78999999962389989994300689999974212222343210123443455677321112212367667466767432
Q gi|255764490|r 88 QEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLG 167 (364)
Q Consensus 88 qEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A 167 (364)
+||+. .+...+.+++.++++- |.+..++++-. +-. ......+|+ +.|..|..+|.|
T Consensus 2 ~~ai~-~v~~~~~~~~~vvs~~---------G~~sreL~~~~----~~~---------~~~~~~~fy-~~GsMG~a~p~A 57 (188)
T cd03371 2 EDAIE-IVLSRAPATAAVVSTT---------GMTSRELFELR----DRP---------GGGHAQDFL-TVGSMGHASQIA 57 (188)
T ss_pred HHHHH-HHHHHCCCCCEEEECC---------CCCHHHHHHHH----HCC---------CCCCCCCCE-EECHHHHHHHHH
T ss_conf 89999-9997289999899799---------98859999998----502---------787667515-543123178999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHCCCH-HHHHHHCCCCCCCCCCC-CCCCCCCHHHHHHHHH
Q ss_conf 5431001123344443310256654--302456765443211401-11022103434444432-3214864357777763
Q gi|255764490|r 168 TGIAFANKYRRSDKICVVCFGDGAA--NQGQVYESFNIAALWNLN-VIYVIENNQYAMGTSVS-RASAQTNFSKRGVSFN 243 (364)
Q Consensus 168 ~G~A~a~k~~~~~~v~v~~~GDGa~--~eG~f~Ealn~A~~~~lP-vifvvenN~~aist~~~-~~~~~~~i~~ra~~~g 243 (364)
.|+++| ..++-+||+.|||+. +-|+ |-.++.+++| +++||.||+.--++-.. ......++++.|+++|
T Consensus 58 iG~ala----~p~r~Vv~l~GDGs~lM~~ge----L~T~~~~~~~n~~~vv~nN~~~~s~g~q~t~~~~~df~~iA~a~G 129 (188)
T cd03371 58 LGIALA----RPDRKVVCIDGDGAALMHMGG----LATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVSLPAIAKACG 129 (188)
T ss_pred HHHHHH----CCCCEEEEEECCHHHHHHHHH----HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 999983----999818999573388888579----999997278877999987965223468766578989999999869
Q ss_pred HH-HHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 11-11210000233688754210245545465589831566
Q gi|255764490|r 244 IP-GMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 244 i~-~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
+. +++|+ ++.++.+++++|+ +..||+|||++|-.
T Consensus 130 ~~~~~~v~--~~~el~~al~~al----~~~gP~~ieV~idp 164 (188)
T cd03371 130 YRAVYEVP--SLEELVAALAKAL----AADGPAFIEVKVRP 164 (188)
T ss_pred CCCEEEEC--CHHHHHHHHHHHH----HCCCCEEEEEEECC
T ss_conf 98279978--9999999999998----48999999999789
No 86
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.08 E-value=8.9e-11 Score=89.22 Aligned_cols=116 Identities=24% Similarity=0.278 Sum_probs=80.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC--------C
Q ss_conf 76674667674325431001123344443310256654302456765443211401110221034-34444--------4
Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT--------S 225 (364)
Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist--------~ 225 (364)
+..|.+|.++|.|+|++++ .++-++|+.|||+..=. ..| |-.|..++||+++||.||+ |.... +
T Consensus 414 ~~~g~mG~glp~aigAa~~-----~~~~Vv~i~GDGsf~m~-~~E-L~Ta~r~~lpi~ivV~NN~g~~~~~~~~~~~~~~ 486 (554)
T TIGR03254 414 GTWGVMGIGMGYAIAAAVE-----TGKPVVALEGDSAFGFS-GME-VETICRYNLPVCVVIFNNGGIYRGDDVNVVGADP 486 (554)
T ss_pred CCCCCCCCCHHHHHHHHHC-----CCCEEEEEECCCCCCCC-HHH-HHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCC
T ss_conf 8766657778999986427-----99818999758510304-899-9999996899589998780899999987428987
Q ss_pred C-CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 3-232148643577777631111210000233688754210245545465589831566
Q gi|255764490|r 226 V-SRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 226 ~-~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
. .......++.+.|++||+++++|+ ++.++-.++++|++ .+||+|||+.+-+
T Consensus 487 ~~~~~~~~~df~~lA~a~G~~g~~V~--~~~eL~~al~~Al~----~~~p~lIeV~vDP 539 (554)
T TIGR03254 487 APTVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEALA----SGKPTLINAVIDP 539 (554)
T ss_pred CCCCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCEEEEEEEECC
T ss_conf 75446789999999987899899979--99999999999982----7990999998389
No 87
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.08 E-value=5.5e-11 Score=90.57 Aligned_cols=116 Identities=22% Similarity=0.332 Sum_probs=80.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCC-CCCCCCCC--CC----C
Q ss_conf 67466767432543100112334444331025665430245676544321140111022103-43444443--23----2
Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENN-QYAMGTSV--SR----A 229 (364)
Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN-~~aist~~--~~----~ 229 (364)
.|.+|..+|-|.|+++| ..++-+||+.|||+..-. ..| |..|..++||++++|-|| +|++--.. .. .
T Consensus 49 ~g~mG~~lpaAiGa~lA----~p~~~Vv~i~GDG~f~m~-~~E-l~Ta~r~~l~vi~vV~NN~~~~~~r~~~~~~~~~~~ 122 (183)
T cd02005 49 WGSIGYSVPAALGAALA----APDRRVILLVGDGSFQMT-VQE-LSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYND 122 (183)
T ss_pred CCHHHHHHHHHHHHHHH----CCCCCEEEEECCHHHHHH-HHH-HHHHHHHCCCEEEEEEECCCCCEEEEECCCCCCCCC
T ss_conf 50377899999999997----899847999567367620-889-999998299819999989943255751268656576
Q ss_pred CCCCCHHHHHHHHH----HHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 14864357777763----1111210000233688754210245545465589831566
Q gi|255764490|r 230 SAQTNFSKRGVSFN----IPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 230 ~~~~~i~~ra~~~g----i~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
....++++.+++|| +++++|+ ++.++..++++|+. +.++|+|||+.+-+
T Consensus 123 ~~~~df~~~A~a~G~~~g~~g~rV~--~~~el~~al~~Al~---~~~~P~liev~vdp 175 (183)
T cd02005 123 IANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALF---NRDKLSLIEVILPK 175 (183)
T ss_pred CCCCCHHHHHHHHCCCCCCEEEEEC--CHHHHHHHHHHHHH---CCCCEEEEEEECCC
T ss_conf 9999999999994786684289978--99999999999997---28982999997487
No 88
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.06 E-value=7.5e-11 Score=89.68 Aligned_cols=114 Identities=23% Similarity=0.309 Sum_probs=78.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCCCC-----CCC
Q ss_conf 674667674325431001123344443310256654302456765443211401110221034-34444432-----321
Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGTSVS-----RAS 230 (364)
Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist~~~-----~~~ 230 (364)
.|.+|-.+|-|+|++++ ..+++ |++.|||+..-.. .| |-.|..++||+++||-||+ |++--... ...
T Consensus 402 ~g~mG~glpaAiGA~~a----~~~r~-v~i~GDG~f~m~~-~E-L~Tavr~~lpi~ivV~NN~~yg~ir~~q~~~~~~~l 474 (535)
T TIGR03394 402 YAGMGFGVPAGIGAQCT----SGKRI-LTLVGDGAFQMTG-WE-LGNCRRLGIDPIVILFNNASWEMLRVFQPESAFNDL 474 (535)
T ss_pred CHHHHHHHHHHHHHHHC----CCCCE-EEEEECCHHHHHH-HH-HHHHHHHCCCCEEEEEECCCCHHHEECCCCCCCCCC
T ss_conf 11565678999899855----99956-9999471676059-99-999999399988999989942321201357777879
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCC-CEEEEECCCC
Q ss_conf 4864357777763111121000023368875421024554546-5589831566
Q gi|255764490|r 231 AQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKG-PIIIEMLTYR 283 (364)
Q Consensus 231 ~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~g-P~lie~~tyR 283 (364)
...++.+.|++||+++++|+ ++.++-.++++|++ ..| |+|||+++-|
T Consensus 475 ~~~df~~lA~a~G~~g~rV~--~~~eL~~al~~A~~----~~g~~~lIev~id~ 522 (535)
T TIGR03394 475 DDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFA----TRGRFQLIEAMLPR 522 (535)
T ss_pred CCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHH----CCCCCEEEEEECCC
T ss_conf 99999999997799899979--89999999999984----58994899998288
No 89
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.03 E-value=2.3e-10 Score=86.52 Aligned_cols=208 Identities=17% Similarity=0.178 Sum_probs=131.3
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCC-CCHHHHHHHHHHHHC
Q ss_conf 10123443455677321112212367667466767432543100112334-4443310256654-302456765443211
Q gi|255764490|r 130 TGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRS-DKICVVCFGDGAA-NQGQVYESFNIAALW 207 (364)
Q Consensus 130 ~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~-~~v~v~~~GDGa~-~eG~f~Ealn~A~~~ 207 (364)
+...+||+.=..++..... .++...++.-+...+.|.|+..|.|.+++ +..++++-|||.+ ..|- .+|--|...
T Consensus 43 i~~~tGCs~v~~g~~p~t~--~~~~~ih~~f~~~~a~asGi~~Alk~~~~~d~~Viv~~GDG~~~dIG~--~~l~ha~~R 118 (300)
T PRK11864 43 LVIPASCSTVIQGLWPKSA--LAVPIVHTAFAATAAVASGIEEALKVRGEKGHVVVVWAGDGGTADIGF--QALSGAAER 118 (300)
T ss_pred EEECCCCCEEECCCCCCCC--CCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHH--HHHHHHHHC
T ss_conf 9978862101157687875--441667777412267799999999970899867999924752654006--878999982
Q ss_pred CCHHHHHHHCCC-CC-------CCCCCC---------CCCCCCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCC
Q ss_conf 401110221034-34-------444432---------32148643577777631111-2100002336887542102455
Q gi|255764490|r 208 NLNVIYVIENNQ-YA-------MGTSVS---------RASAQTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCR 269 (364)
Q Consensus 208 ~lPvifvvenN~-~a-------ist~~~---------~~~~~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r 269 (364)
+.+++++|.||+ |+ -+||.. +.....++...+.++|++++ ++---++.+..+.+++|.++
T Consensus 119 n~~i~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~ttp~Gk~~~kkdl~~i~~a~g~~YVA~~~~a~~~~l~~~i~kA~~~-- 196 (300)
T PRK11864 119 GHDILYIMYDNEAYMNTGIQRSGSTPYGAWTTTTPGGKRERKKPVADIMAAHGVPYVATASIAYPEDFIRKLKKAAEI-- 196 (300)
T ss_pred CCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCC--
T ss_conf 898599998571310468846888988542455899987899899999997599879998556999999999999718--
Q ss_pred CCCCCEEEEECCCCCCCCCCCC-----------CCCCCCHHHHHH-------------HHHHCCHHHHHHHHHHHCC---
Q ss_conf 4546558983156688766678-----------766789999999-------------8983893799999999878---
Q gi|255764490|r 270 AHKGPIIIEMLTYRYRGHSMSD-----------PANYRTREEINE-------------MRSNHDPIEQVRKRLLHNK--- 322 (364)
Q Consensus 270 ~~~gP~lie~~tyR~~gHs~~D-----------~~~YR~~~Ei~~-------------~~~~~DPI~~~~~~L~~~g--- 322 (364)
+||.||++.+-.-.||-..+ .+.|.+-=|++. -++++-| ++++|...+
T Consensus 197 --~G~s~i~v~spCp~gw~~~~~~t~~~~klAVesg~wpLye~~~g~~~~~~~~~~~~~~~~~~p---v~eyl~~q~Rf~ 271 (300)
T PRK11864 197 --PGFKFIHLLAPCPPGWRFDPAKTIEIARLAVETGAWPLFEYENGKFKLNPPSTTLADKKKRKP---VEEYLKLQGRFK 271 (300)
T ss_pred --CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCEEECCCCCCCCCCCCCCCC---HHHHHHHCCCCH
T ss_conf --998799997889565886813689999999980995379977897650588755457778879---999976274621
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99989999999999999999999998
Q gi|255764490|r 323 WASEGDLKEIEMNVRKIINNSVEFAQ 348 (364)
Q Consensus 323 ~~te~e~~~i~~~~~~~v~~a~~~A~ 348 (364)
.+++++++++++++++..+...+.++
T Consensus 272 hL~~e~~~~~q~~vd~~we~l~~lae 297 (300)
T PRK11864 272 HLTEEDIKALQEEIEEEWEEILKLAK 297 (300)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 04999999999999999999999998
No 90
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type; InterPro: IPR012846 Two groups of proteins form acetolactate from two molecules of pyruvate. The type of acetolactate synthase described in this entry also catalyzes the formation of acetohydroxybutyrate from pyruvate and 2-oxobutyrate, an early step in the branched chain amino acid biosynthesis; it is therefore also termed acetohydroxyacid synthase. In bacteria, this catalytic chain is associated with a smaller regulatory chain in an alpha2/beta2 heterotetramer. Acetolactate synthase is a thiamine pyrophosphate enzyme. In this type, FAD and Mg++ are also found. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding, 0009082 branched chain family amino acid biosynthetic process.
Probab=99.02 E-value=2.8e-10 Score=85.99 Aligned_cols=184 Identities=16% Similarity=0.289 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCH-HHHHH---HHHHHCCC--CCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999999789877722058987-89999---99962389--989994300689999974212222343210123443
Q gi|255764490|r 64 RFEEKAGQLYGMGMVGGFCHLCIGQ-EAVIV---GMKMSLTE--GDQMITAYREHGHILACGVDASKIMAELTGRQGGIS 137 (364)
Q Consensus 64 ~~e~~~~~l~~qg~i~g~~~~~~Gq-Ea~~v---g~~~al~~--~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk~~g~~ 137 (364)
...+++.++.+..-+ -|+-...+. =..|- -+...++. .|-+.++==+...|.+ |+.|-
T Consensus 366 ~W~~~i~~Wk~~~~l-~Y~~~~~~~kiKPQ~vi~~~~~~~~~~~~~aivTTDVGQhQMWa---------A~fy~------ 429 (593)
T TIGR00118 366 AWLEQINKWKKEYPL-AYMDYTEEGKIKPQQVIEEISRVTKDIGREAIVTTDVGQHQMWA---------AQFYP------ 429 (593)
T ss_pred HHHHHHHHHHHHCCH-HHCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCHHHHHH---------HHHCC------
T ss_conf 999999998761473-12466788853607999999996278885368972777347889---------86157------
Q ss_pred CCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 455677321112212367--667466767432543100112334444331025665430245676544321140111022
Q gi|255764490|r 138 KGKGGSMHMFSTKNGFYG--GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVI 215 (364)
Q Consensus 138 ~Gr~gs~H~~~~~~~~~~--~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvv 215 (364)
+.....|+. .-|..|-++|-|.|+-.|. .+.-|||..|||+..=- .-| |..+.-+++||+.||
T Consensus 430 ---------~~~Pr~fI~SGGLGTMGFGlPAAiGAkvA~----pe~~Vi~i~GDGsF~Mn-~QE-L~t~~~y~iPV~i~i 494 (593)
T TIGR00118 430 ---------FKKPRKFITSGGLGTMGFGLPAAIGAKVAK----PEETVICITGDGSFQMN-LQE-LSTIVQYDIPVKIVI 494 (593)
T ss_pred ---------CCCCCCEECCCCCCCCCCCCHHHHCCCCCC----CCCCEEEEECCCCCCCH-HHH-HHHHHHCCCCEEEEE
T ss_conf ---------778864131377631101026886000047----88664787538732123-467-889987189649998
Q ss_pred HCCCC-CC------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf 10343-44------------44432321486435777776311112100002336887542102455454655898315
Q gi|255764490|r 216 ENNQY-AM------------GTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364)
Q Consensus 216 enN~~-ai------------st~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364)
-||+| |+ ...+.-....++|.+.|++||+.|++|. .+.++-+++++|++.-|+ ++|+||++..
T Consensus 495 LNN~~LGMV~QWQ~lfY~~RyS~t~~~~~~PDF~kLAEayG~~G~ri~--~~~E~~~kL~Ea~~~~r~-n~Pv~~Dv~V 570 (593)
T TIGR00118 495 LNNRYLGMVRQWQELFYEERYSETHMGSELPDFVKLAEAYGIKGIRIE--KPEELDEKLKEALESKRN-NEPVLLDVVV 570 (593)
T ss_pred ECCCCCCHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHCCCCEEEEC--CHHHHHHHHHHHHHHCCC-CCCEEEEEEE
T ss_conf 458965604888887521102357630689428999987295025547--887799999999861468-8846999997
No 91
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.01 E-value=1.3e-10 Score=88.12 Aligned_cols=110 Identities=23% Similarity=0.313 Sum_probs=75.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCC---------CCCC
Q ss_conf 4667674325431001123344443310256654302456765443211401110221034-34444---------4323
Q gi|255764490|r 159 IVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ-YAMGT---------SVSR 228 (364)
Q Consensus 159 ~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~-~aist---------~~~~ 228 (364)
-+++++|-|+|+|++. ++.++|++|||+..-. . -+|-.+..+++|+++||.||+ ++|-- ..++
T Consensus 52 GIdg~lstAiGaa~a~-----~~pvv~i~GDgsf~~d-~-~eL~t~~~~~~pv~ivV~NN~GggIf~~l~~~~~~~~~~~ 124 (175)
T cd02009 52 GIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHD-L-NGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEFER 124 (175)
T ss_pred CCCCHHHHHHHHHHCC-----CCCEEEEEECHHHHCC-H-HHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCE
T ss_conf 5220899999999658-----9988999702686616-7-8999998669982999994898339999877503686431
Q ss_pred CCC---CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf 214---86435777776311112100002336887542102455454655898315
Q gi|255764490|r 229 ASA---QTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364)
Q Consensus 229 ~~~---~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364)
... ..++.+.|++||+++.+|+ +..+..++++++++ .+||+|||+.|
T Consensus 125 ~~~tp~~~df~~lA~a~G~~~~~v~--~~~el~~al~~~~~----~~gp~lIEV~t 174 (175)
T cd02009 125 LFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALA----QDGPHVIEVKT 174 (175)
T ss_pred EECCCCCCCHHHHHHHCCCCEEEEC--CHHHHHHHHHHHHH----CCCCEEEEEEC
T ss_conf 2157776689999998699779849--99999999999983----89989999968
No 92
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=98.99 E-value=1.6e-10 Score=87.66 Aligned_cols=118 Identities=22% Similarity=0.336 Sum_probs=83.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHCC-CHHHHHHHCCC-CCCCC
Q ss_conf 22123676674667674325431001123344443310256654--3024567654432114-01110221034-34444
Q gi|255764490|r 149 TKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAA--NQGQVYESFNIAALWN-LNVIYVIENNQ-YAMGT 224 (364)
Q Consensus 149 ~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~--~eG~f~Ealn~A~~~~-lPvifvvenN~-~aist 224 (364)
++.+|+. .|..|...|+|.|+|++.. + -++|+-|||+. +-|. |..++.++ +|+++|+-||+ |+...
T Consensus 34 ~~~~f~~-~GsMG~~~~~alG~al~~p----~-kVi~idGDGs~lM~lg~----LaTi~~~~~~nl~~ivlnN~~~~s~G 103 (157)
T cd02001 34 RDGHFYM-LGSMGLAGSIGLGLALGLS----R-KVIVVDGDGSLLMNPGV----LLTAGEFTPLNLILVVLDNRAYGSTG 103 (157)
T ss_pred CCCCEEE-ECHHHHHHHHHHHHHHCCC----C-CEEEEECCHHHHHCCCH----HHHHHHCCCCCEEEEEEECCCCCCCC
T ss_conf 8886686-5401328899999985389----9-68999575588752461----99998638988799999797532467
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf 4323214864357777763111121000023368875421024554546558983156
Q gi|255764490|r 225 SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTY 282 (364)
Q Consensus 225 ~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ty 282 (364)
.........++.+.|+++|+.+++++ +..+..+++++++ +..||+|||+++-
T Consensus 104 gQ~t~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~~l----~~~GP~fIeV~I~ 155 (157)
T cd02001 104 GQPTPSSNVNLEAWAAACGYLVLSAP--LLGGLGSEFAGLL----ATTGPTLLHAPIA 155 (157)
T ss_pred CCCCCCCCCCHHHHHHHCCCCEEEEC--CHHHHHHHHHHHH----CCCCCEEEEEEEC
T ss_conf 85675446699999998698579958--9999999999998----4999989999956
No 93
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.99 E-value=4.1e-09 Score=78.57 Aligned_cols=152 Identities=18% Similarity=0.142 Sum_probs=108.4
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHC
Q ss_conf 210123443455677321112212367667466767432543100112334444331025665-4302456765443211
Q gi|255764490|r 129 LTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGA-ANQGQVYESFNIAALW 207 (364)
Q Consensus 129 ~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~ 207 (364)
++...+||+.-.+++.... ..++...++.-+...+.|.|+..|.|..+++-.++++-|||. ...|- -+|.-|...
T Consensus 40 vi~~~tGCssv~~~~~p~~--~~~~~~ihs~f~~aaa~a~Gi~~a~k~~~~~~~Vv~~~GDG~~~dIG~--~~l~ha~~R 115 (298)
T PRK11865 40 VVAVATGCLEVITTPYPET--AWNVPWIHVAFENAAAVASGIERAVKALGKKVNVVAFGGDGGTADIGF--QALSGAMER 115 (298)
T ss_pred EEEECCCCCCCCCCCCCCC--CCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHH--HHHHHHHHC
T ss_conf 9997988477548767777--656862100320336789999999998457807999956852654217--889999982
Q ss_pred CCHHHHHHHCCC-CC-------CCCCCCCCC--------------CCCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHH
Q ss_conf 401110221034-34-------444432321--------------48643577777631111-21000023368875421
Q gi|255764490|r 208 NLNVIYVIENNQ-YA-------MGTSVSRAS--------------AQTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKA 264 (364)
Q Consensus 208 ~lPvifvvenN~-~a-------ist~~~~~~--------------~~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a 264 (364)
+.+++++|-||+ |+ -+||....+ ...++...+.++|++++ ++---++.+..+.+++|
T Consensus 116 n~~i~~iv~DNe~Y~nTGgQ~S~aTp~Ga~t~ttp~Gk~~~g~~~~kkdl~~ia~a~g~~YVA~~s~~~~~~l~~~i~kA 195 (298)
T PRK11865 116 GHNIVYIMYDNEAYMNTGIQRSGSTPFGASTTTSPAGKYSRGEDRPKKDMPLIMAAHGIPYVATASIGYPEDFMKKVKKA 195 (298)
T ss_pred CCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHH
T ss_conf 99859999847121036886688997865310378986666666687689999998299889998257999999999999
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 024554546558983156688766
Q gi|255764490|r 265 VAYCRAHKGPIIIEMLTYRYRGHS 288 (364)
Q Consensus 265 ~~~~r~~~gP~lie~~tyR~~gHs 288 (364)
+++ +||.+|++.+..-.|+-
T Consensus 196 ~~~----~G~s~i~v~sPCp~gw~ 215 (298)
T PRK11865 196 AEV----DGPAYIQVLQPCPTGWG 215 (298)
T ss_pred HHC----CCCEEEEEECCCCCCCC
T ss_conf 808----99879999788956688
No 94
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=98.92 E-value=1.1e-09 Score=82.33 Aligned_cols=114 Identities=23% Similarity=0.291 Sum_probs=84.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCC----CCCCC---
Q ss_conf 74667674325431001123344443310256654-302456765443211401110221034-3444----44323---
Q gi|255764490|r 158 GIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAA-NQGQVYESFNIAALWNLNVIYVIENNQ-YAMG----TSVSR--- 228 (364)
Q Consensus 158 ~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~-~eG~f~Ealn~A~~~~lPvifvvenN~-~ais----t~~~~--- 228 (364)
...|..+|.|.|++.| +.+..+|++.|||+. ..|. ..|-.|...++|++++|.||+ |++. .|...
T Consensus 51 ~~mG~~~~~A~G~k~a----~p~~~Vv~~~GDG~~~~~G~--~~l~~av~~~~~it~iv~nN~~ygmTggQ~sp~~~~~~ 124 (178)
T cd02008 51 TCMGASIGVAIGMAKA----SEDKKVVAVIGDSTFFHSGI--LGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKTL 124 (178)
T ss_pred ECCCCCHHHHHHHHHH----CCCCCEEEEECCHHHHHHHH--HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 1357737899778987----89983799957627766319--99999998297959999948530013675589988877
Q ss_pred --CCCCCCHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf --214864357777763111121-00002336887542102455454655898315
Q gi|255764490|r 229 --ASAQTNFSKRGVSFNIPGMQV-DGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364)
Q Consensus 229 --~~~~~~i~~ra~~~gi~~~~v-DG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364)
.+...++...++++|++++++ +..|+.++.+++++|++ .+||.||++..
T Consensus 125 ~~~~~~~d~~~~a~a~G~~~v~~~~~~d~~~~~~~l~~A~~----~~G~s~I~v~~ 176 (178)
T cd02008 125 TEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALA----VPGVSVIIAKR 176 (178)
T ss_pred CCCCCCCCHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHC----CCCCEEEEEEC
T ss_conf 78789879899999779999999784419999999999973----89978999948
No 95
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=98.73 E-value=2.5e-08 Score=73.57 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=107.6
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCC-CCHHHHHHHHHHH
Q ss_conf 21012344345567732111221236766746676743254310011233--44443310256654-3024567654432
Q gi|255764490|r 129 LTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRR--SDKICVVCFGDGAA-NQGQVYESFNIAA 205 (364)
Q Consensus 129 ~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~--~~~v~v~~~GDGa~-~eG~f~Ealn~A~ 205 (364)
++....||+...++...... .++...++.-|...+.|+|+..|.|.++ .+-.++++-|||.+ ..|- - .|.-|+
T Consensus 29 vi~~~iGCs~~~~~~~p~~~--~~~~~ih~~hgra~a~AtGik~a~~~l~~~~~~~Vv~~~GDG~~~dIG~-~-~l~haa 104 (235)
T cd03376 29 VVVNPTGCLEVITTPYPYTA--WRVPWIHVAFENAAAVASGIEAALKALGRGKDITVVAFAGDGGTADIGF-Q-ALSGAA 104 (235)
T ss_pred EEEECCCCCCCCCCCCCCCC--CCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHH-H-HHHHHH
T ss_conf 99979864865487787776--4176054000146776661999999861389963999964744754207-8-899999
Q ss_pred HCCCHHHHHHHCCC-CCC-------CCCCCCCC--------------CCCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHH
Q ss_conf 11401110221034-344-------44432321--------------48643577777631111-210000233688754
Q gi|255764490|r 206 LWNLNVIYVIENNQ-YAM-------GTSVSRAS--------------AQTNFSKRGVSFNIPGM-QVDGMDIRAVKATMD 262 (364)
Q Consensus 206 ~~~lPvifvvenN~-~ai-------st~~~~~~--------------~~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~ 262 (364)
..+.+++++|-||+ |+. +||....+ ...++...+.++|.+++ ++...|+....+.++
T Consensus 105 ~Rn~~i~~iv~dN~~YgnTGGQ~S~tTp~G~~t~tsp~G~~~~g~~~~~kd~~~i~~a~g~~yVA~~~~~~~~~~~k~i~ 184 (235)
T cd03376 105 ERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVK 184 (235)
T ss_pred HCCCCEEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHH
T ss_conf 82998399998882100368966989989863112688855778777886999999870995899974589999999999
Q ss_pred HHCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 2102455454655898315668876667
Q gi|255764490|r 263 KAVAYCRAHKGPIIIEMLTYRYRGHSMS 290 (364)
Q Consensus 263 ~a~~~~r~~~gP~lie~~tyR~~gHs~~ 290 (364)
+|+++ +||.|||+.+-.-.+|-..
T Consensus 185 ~A~~~----~G~s~i~v~spCpt~w~~~ 208 (235)
T cd03376 185 KALSI----EGPAYIHILSPCPTGWRFD 208 (235)
T ss_pred HHHCC----CCCEEEEEECCCCCCCCCC
T ss_conf 99728----9988999964796667959
No 96
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=98.69 E-value=1.3e-08 Score=75.42 Aligned_cols=121 Identities=28% Similarity=0.383 Sum_probs=85.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCC------
Q ss_conf 2367667466767432543100112334444331025665-4302456765443211401110221034-3444------
Q gi|255764490|r 152 GFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGA-ANQGQVYESFNIAALWNLNVIYVIENNQ-YAMG------ 223 (364)
Q Consensus 152 ~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~lPvifvvenN~-~ais------ 223 (364)
+.....+.-|..++.|.|+.++ +.+..+|++.|||+ ...|. ..|.-|...+.+++++|-||+ |++.
T Consensus 45 ~~~~~~~~hG~a~~~A~G~k~a----~p~~~Vva~~GDG~~~~iG~--~~l~~A~~rn~~i~~iv~DN~~ygmTGgQ~sp 118 (193)
T cd03375 45 NTYGFHTLHGRALAVATGVKLA----NPDLTVIVVSGDGDLAAIGG--NHFIHAARRNIDITVIVHNNQIYGLTKGQASP 118 (193)
T ss_pred HCCCCCHHHCCCHHHHHHHHHH----CCCCEEEEEEECCHHHHCCH--HHHHHHHHHCCCEEEEEECCCCEECCCCCCCC
T ss_conf 1586520211608888679875----99973999970655764561--88999998099749999858404423683488
Q ss_pred -CCCCCC---------CCCCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf -443232---------148643577777631111-21000023368875421024554546558983156
Q gi|255764490|r 224 -TSVSRA---------SAQTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTY 282 (364)
Q Consensus 224 -t~~~~~---------~~~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ty 282 (364)
||.... ....++.+.+.+.|.+.+ +++-.|+.+..+++++|++ .+||.|||+.+-
T Consensus 119 tT~~g~~t~ttp~G~~~~~~d~~~ia~a~G~~yVa~~~~~~~~~l~~~ik~Al~----~~G~s~I~v~sp 184 (193)
T cd03375 119 TTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ----HKGFSFVEVLSP 184 (193)
T ss_pred CCCCCCEECCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHH----CCCCEEEEEECC
T ss_conf 988985541367787657889999998759987999657999999999999980----899889999889
No 97
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=98.67 E-value=9.5e-09 Score=76.22 Aligned_cols=115 Identities=24% Similarity=0.378 Sum_probs=77.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHCCCH-HHHHHHCCC-CCCCCC
Q ss_conf 2123676674667674325431001123344443310256654--302456765443211401-110221034-344444
Q gi|255764490|r 150 KNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAA--NQGQVYESFNIAALWNLN-VIYVIENNQ-YAMGTS 225 (364)
Q Consensus 150 ~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~--~eG~f~Ealn~A~~~~lP-vifvvenN~-~aist~ 225 (364)
..+|+. .|..|..+|.|.|+|+|.. +-++|+.|||+. +-|. |..++..+.| ++++|-||+ |+ +|-
T Consensus 35 ~~~F~~-lGtMG~~~p~aiGaa~a~p-----~kVi~i~GDGs~lM~~ge----L~Ti~~~~~~n~~~ivlnN~~~g-~~g 103 (179)
T cd03372 35 PLNFYM-LGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLLMNLGA----LATIAAEKPKNLIIVVLDNGAYG-STG 103 (179)
T ss_pred CCCEEE-ECHHHHHHHHHHHHHHCCC-----CCEEEEECCHHHHHHHHH----HHHHHHHCCCCEEEEEEECCCCC-CCC
T ss_conf 776673-1344508899999986579-----968999678046543669----99999726897899998388755-413
Q ss_pred CCCC--CCCCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 3232--148643577777631111-210000233688754210245545465589831566
Q gi|255764490|r 226 VSRA--SAQTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 226 ~~~~--~~~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
.+.. ....++.+.|++||+++. .|+ +..++-++++++. .||+|||+++-+
T Consensus 104 ~q~t~~~~~~Df~~iA~a~G~~~~~~v~--~~e~l~~~l~~~~------~gP~~iev~i~~ 156 (179)
T cd03372 104 NQPTHAGKKTDLEAVAKACGLDNVATVA--SEEAFEKAVEQAL------DGPSFIHVKIKP 156 (179)
T ss_pred CCCCCCCCCCCHHHHHHHCCCCEEEEEC--CHHHHHHHHHHHC------CCCEEEEEEECC
T ss_conf 5036667898999999987997399989--9999999999847------999999999879
No 98
>pfam09364 XFP_N XFP N-terminal domain. Bacterial enzyme splits fructose-6-P and/or xylulose-5-P with the aid of inorganic phosphate into either acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22. This family is distantly related to transketolases e.g. pfam02779.
Probab=98.66 E-value=2e-07 Score=67.68 Aligned_cols=178 Identities=19% Similarity=0.255 Sum_probs=108.1
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCC--CEEEECCCCHH--HHHHHHHHHHHHHHHHHCCC----CC-------CCCCCCCCC
Q ss_conf 72205898789999999623899--89994300689--99997421222234321012----34-------434556773
Q gi|255764490|r 80 GFCHLCIGQEAVIVGMKMSLTEG--DQMITAYREHG--HILACGVDASKIMAELTGRQ----GG-------ISKGKGGSM 144 (364)
Q Consensus 80 g~~~~~~GqEa~~vg~~~al~~~--D~~~~~yR~~~--~~l~~G~~~~~~~ae~~gk~----~g-------~~~Gr~gs~ 144 (364)
|-.-++.|+--+=+-+-..+++. |.+|-.=-+|| .+++- .-++..+.|+|-.- .| +|-.-|-++
T Consensus 48 GHWGT~PGlnfiYaHlNr~I~~~dl~mi~i~GPGHGgpa~~an-~yLeGtyse~YP~i~~d~~Gm~~lfkqFSfPgGipS 126 (379)
T pfam09364 48 GHWGTSPGLSFLYAHLNRIINKYDQNMLYVVGPGHGGPAMVSP-SYLEGSYSEFYPEITFDEEGLKKLFKQFSFPGGIPS 126 (379)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-HHCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 7577870499999998899874588769985698762555544-430343222178998688999999984899898767
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC----------HHHHH
Q ss_conf 21112212367667466767432543100112334444331025665430245676544321140----------11102
Q gi|255764490|r 145 HMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNL----------NVIYV 214 (364)
Q Consensus 145 H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~l----------Pvifv 214 (364)
|......+-+.--|-+|-.+.+|.|+++ .+.+-++.|.+|||.+++|. +|+.|.. .|+=|
T Consensus 127 H~~petPGsIhEGGELGYsLshA~GAv~----DnPdLiva~VvGDGEaETGP------lAtsWhsnkFlnP~~dGaVLPI 196 (379)
T pfam09364 127 HMAPETPGSIHEGGELGYALSHAYGAVF----DNPDLIVACVVGDGEAETGP------LATSWHSNKFLNPATDGAVLPI 196 (379)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCC----CCCCEEEEEEECCCCCCCCC------CHHHHCCCCCCCCCCCCCCCEE
T ss_conf 6789999742457530135564305645----89886899974686323574------1011144433581336640302
Q ss_pred HHCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf 21034344444323-2148643577777631111210000233688754210245
Q gi|255764490|r 215 IENNQYAMGTSVSR-ASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYC 268 (364)
Q Consensus 215 venN~~aist~~~~-~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~ 268 (364)
+-=|+|-|+-|+-. ......+.....|||..-+.|+|.|+.++++.+..+++.+
T Consensus 197 LhLNGyKI~npTilar~~~~EL~~lf~G~Gy~p~~Veg~d~~~~h~~mA~~ld~~ 251 (379)
T pfam09364 197 LHLNGYKISNPTILARISDEELRKLFEGYGYEPYFVEGHDPESMHRLMAETLDWA 251 (379)
T ss_pred EECCCCCCCCCEEECCCCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHH
T ss_conf 4205631268745322898999999842798417970798588999999999999
No 99
>PRK06163 hypothetical protein; Provisional
Probab=98.60 E-value=1.8e-08 Score=74.44 Aligned_cols=119 Identities=15% Similarity=0.201 Sum_probs=79.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHCCCH-HHHHHHCCCCCCCC
Q ss_conf 122123676674667674325431001123344443310256654--302456765443211401-11022103434444
Q gi|255764490|r 148 STKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAA--NQGQVYESFNIAALWNLN-VIYVIENNQYAMGT 224 (364)
Q Consensus 148 ~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~--~eG~f~Ealn~A~~~~lP-vifvvenN~~aist 224 (364)
++..+|+. .|..|...|+|.|+|++. .++-++|+-|||+. +=|. |-..+..+.+ +++||.||+---||
T Consensus 48 d~~~nFy~-vGsMG~as~iaLG~Ala~----p~k~Vi~iDGDGs~LM~mGs----LaTi~~~~p~Nl~hIvlnN~~~~st 118 (202)
T PRK06163 48 QRPQNFYM-LGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLLMQLGA----LGTIAALAPKNLTIIVMDNGVYQIT 118 (202)
T ss_pred CCCCCEEE-ECCCCCHHHHHHHHHHHC----CCCEEEEEECCHHHHHCHHH----HHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 87677677-522101889999999878----99828999476688735688----9999971788569999869640016
Q ss_pred CCCCC-C-CCCCHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf 43232-1-486435777776311-112100002336887542102455454655898315
Q gi|255764490|r 225 SVSRA-S-AQTNFSKRGVSFNIP-GMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364)
Q Consensus 225 ~~~~~-~-~~~~i~~ra~~~gi~-~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364)
--... + ...++...|+++|++ ..+|+. ..++ .++++.+.+..||+|||++.
T Consensus 119 GgQ~T~~~~~vDf~~iA~a~Gy~~~~~v~~--~~el----~~~l~~~l~~~GP~fi~Vki 172 (202)
T PRK06163 119 GGQPTLTSQTVDVVAIARGAGLENSHWAAD--EAHF----EALVDQALSGPGPSFIAVRI 172 (202)
T ss_pred CCCCCCCCCCCCHHHHHHHCCCCCEEEECC--HHHH----HHHHHHHHHCCCCEEEEEEE
T ss_conf 874577678879999999779985799779--9999----99999998389989999993
No 100
>PRK05261 putative phosphoketolase; Provisional
Probab=98.59 E-value=7.1e-08 Score=70.61 Aligned_cols=175 Identities=21% Similarity=0.269 Sum_probs=105.3
Q ss_pred CCCCCHHHHHHHHHHHCCCC--CEEEECCCCHH--HHHHHHHHHHHHHHHHHCC----CCC-------CCCCCCCCCCCC
Q ss_conf 05898789999999623899--89994300689--9999742122223432101----234-------434556773211
Q gi|255764490|r 83 HLCIGQEAVIVGMKMSLTEG--DQMITAYREHG--HILACGVDASKIMAELTGR----QGG-------ISKGKGGSMHMF 147 (364)
Q Consensus 83 ~~~~GqEa~~vg~~~al~~~--D~~~~~yR~~~--~~l~~G~~~~~~~ae~~gk----~~g-------~~~Gr~gs~H~~ 147 (364)
-++.|+--+=+-+-..+++. |.++-.=-+|| .+++- .-++.-+.|++-. +.| +|-.-|-.+|..
T Consensus 54 GT~pGlnfiYaHlNr~I~~~~~~~~~i~GPGHGgpa~~an-~yLeGtyse~yp~i~~d~~Gl~~l~~qFS~pgGi~SH~~ 132 (786)
T PRK05261 54 GTTPGLNFIYAHLNRLIRKYDLDMIYIAGPGHGGPAMVAN-AYLEGTYSEIYPEISQDEEGMKRLFKQFSFPGGIPSHAA 132 (786)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-HHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 7882499999998898740587459995488668888777-665276602367889788999999984899898756678
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH----------HHHHHHC
Q ss_conf 122123676674667674325431001123344443310256654302456765443211401----------1102210
Q gi|255764490|r 148 STKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLN----------VIYVIEN 217 (364)
Q Consensus 148 ~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lP----------vifvven 217 (364)
....|-+.--|-+|-.+.+|.|+++ .+.+-++.|.+|||.+++|. +|+.|..+ |+=|+.=
T Consensus 133 petPGsIhEGGELGYsLsha~GA~l----DnPdliva~vvGDGEaETGp------lAtsW~s~kflnP~~dGaVLPILhL 202 (786)
T PRK05261 133 PETPGSIHEGGELGYSLSHAYGAAF----DNPDLIVACVVGDGEAETGP------LAASWHSNKFLNPATDGAVLPILHL 202 (786)
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCC----CCCCEEEEEEECCCCCCCCC------CCHHCCCCCCCCCCCCCCCCEEEEE
T ss_conf 8999730346421256776615755----89985999983586101585------4000045433581347631015741
Q ss_pred CCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf 3434444432-32148643577777631111210000233688754210245
Q gi|255764490|r 218 NQYAMGTSVS-RASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYC 268 (364)
Q Consensus 218 N~~aist~~~-~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~ 268 (364)
|||-|+-|+- -+.....+.+...|||..-+.|+|.|+.+++..+..+++.+
T Consensus 203 NG~KI~npTilar~~~~eL~~lf~G~Gy~P~~Veg~dp~~~h~~mA~ald~a 254 (786)
T PRK05261 203 NGYKIANPTILARISDEELESLFRGYGYEPIFVEGDDPADMHQEMAAALDTA 254 (786)
T ss_pred CCCCCCCCEEECCCCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHH
T ss_conf 5731368712213787999999862798856965888799999999999999
No 101
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=98.59 E-value=2.1e-08 Score=74.07 Aligned_cols=122 Identities=20% Similarity=0.307 Sum_probs=88.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-------
Q ss_conf 3455677321112212367667466767432543100112334444331025665430245676544321140-------
Q gi|255764490|r 137 SKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNL------- 209 (364)
Q Consensus 137 ~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~l------- 209 (364)
|-..|-++|..-...+.+.--|-+|-.+.+|.|+++ .+.+.++.|.+|||.+++|. +|+.|+.
T Consensus 41 S~pgGipSH~~PetPGsIhEGGELGYsLshA~GA~~----DnPdliva~VvGDGEaETGP------lAtsW~s~kflnP~ 110 (227)
T cd02011 41 SFPGGIPSHAAPETPGSIHEGGELGYSLSHAYGAVF----DNPDLIVACVVGDGEAETGP------LATSWHSNKFLNPA 110 (227)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC----CCCCEEEEEEECCCCCCCCC------CHHHHCCCCCCCCC
T ss_conf 998987677789999750667630235554305534----89986999985686323584------12222220015833
Q ss_pred ---HHHHHHHCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf ---111022103434444432-32148643577777631111210000233688754210245
Q gi|255764490|r 210 ---NVIYVIENNQYAMGTSVS-RASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYC 268 (364)
Q Consensus 210 ---PvifvvenN~~aist~~~-~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~ 268 (364)
.||=|+-=|+|-|+-|+- -......+.+...|||..-+.|+|.|+.+++..+..+++.+
T Consensus 111 ~dGaVLPIlhLNGyKIsnpTilar~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~mA~~ld~a 173 (227)
T cd02011 111 TDGAVLPILHLNGYKISNPTILARISHEELEALFRGYGYEPYFVEGDDPETMHQAMAATLDWA 173 (227)
T ss_pred CCCCEEEEEECCCCCCCCCEEECCCCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHH
T ss_conf 477244577416740268854312798999999841898217977898068999999999999
No 102
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase; InterPro: IPR014092 Members of this family are examples of pyruvate oxidase (1.2.3.3 from EC), an enzyme with FAD and TPP as cofactors that catalyses the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase (1.2.2.2 from EC) as in Escherichia coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name..
Probab=98.52 E-value=1.2e-07 Score=69.10 Aligned_cols=147 Identities=21% Similarity=0.285 Sum_probs=104.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCC-CCCC-CCCCC-------
Q ss_conf 67466767432543100112334444331025665430245676544321140111022103-4344-44432-------
Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENN-QYAM-GTSVS------- 227 (364)
Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN-~~ai-st~~~------- 227 (364)
+|.+=..+.+++-.|+|.|....+|=+....|||+.+ .+++=|-.-.-++||||=||--| +|+- -.-.+
T Consensus 403 TS~LFATMG~GvPGAiAAK~~YPdRqvfnl~GDGAf~--M~~~d~~t~V~Y~LPviNiVfSn~~lgFIk~eq~dd~~~~l 480 (577)
T TIGR02720 403 TSALFATMGVGVPGAIAAKLNYPDRQVFNLAGDGAFS--MVMQDLLTQVKYHLPVINIVFSNETLGFIKDEQEDDSQQPL 480 (577)
T ss_pred CCHHHHHHCCCCHHHHHHHCCCCCCCEEECCCCCHHH--HCCHHHHHHCCCCCCEEEEEECCCCCCCCHHHHCCCCCCCE
T ss_conf 2212445402124788720578622222034520244--11077886300048678787447632550212045788871
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCC----CCCCCCCCCHHHH
Q ss_conf --3214864357777763111121000023368875421024554546558983156688766----6787667899999
Q gi|255764490|r 228 --RASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHS----MSDPANYRTREEI 301 (364)
Q Consensus 228 --~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs----~~D~~~YR~~~Ei 301 (364)
--....++++.|+|+|+.|++|+- +.++.+++.+|+....+ ++|+||.++-.--+|=. .-||. -.+++.|
T Consensus 481 ~Gvdl~d~DfAKiAeG~G~~Gf~V~~--~~~l~~~~e~A~~~~k~-~~pVlIDa~iT~~rPLp~E~L~lD~~-~~s~~~i 556 (577)
T TIGR02720 481 FGVDLTDADFAKIAEGVGAVGFRVEK--IEQLKAVFEEAKKELKE-GKPVLIDAKITDKRPLPVEVLELDPA-LSSEAKI 556 (577)
T ss_pred EEECCCCCCHHHHHCCCCEEEEEECC--HHHHHHHHHHHHHHHHC-CCCEEEEEEECCCCCCCEEEEECCCC-CCCHHHH
T ss_conf 52034546614332364404787175--87889999999999847-89789987872888786757743887-6878899
Q ss_pred HHHHHHCC
Q ss_conf 99898389
Q gi|255764490|r 302 NEMRSNHD 309 (364)
Q Consensus 302 ~~~~~~~D 309 (364)
+..++|-|
T Consensus 557 ~aFk~kYd 564 (577)
T TIGR02720 557 EAFKEKYD 564 (577)
T ss_pred HHHHHHCC
T ss_conf 99862004
No 103
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=98.52 E-value=5.4e-07 Score=64.95 Aligned_cols=208 Identities=15% Similarity=0.164 Sum_probs=119.8
Q ss_pred HHHHHCCCCCC-CCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99997898777-22058987899999996238998999430068999997421222234321012344345567732111
Q gi|255764490|r 70 GQLYGMGMVGG-FCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFS 148 (364)
Q Consensus 70 ~~l~~qg~i~g-~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk~~g~~~Gr~gs~H~~~ 148 (364)
.++.|+.+++. ||.. =|+-.+.-++..++.+ .|+++.++. +-.--||| ||- .++
T Consensus 6 ~~ylr~~~~P~~wCpG-CG~g~Il~~l~~A~~e----------------lg~~~~~~v---vvsGIGCS-~r~--~~Y-- 60 (281)
T PRK09628 6 DEYLRVDKMPTLWCWG-CGDGVILKSIIRAIDK----------------LGWNMDDVC---VVSGIGCS-GRF--SSY-- 60 (281)
T ss_pred HHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHHH----------------HCCCCCCEE---EEECCCCC-CCC--CCE--
T ss_conf 8883356899887889-9768999999999998----------------199955489---99478735-303--371--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCC----
Q ss_conf 2212367667466767432543100112334444331025665-4302456765443211401110221034-344----
Q gi|255764490|r 149 TKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGA-ANQGQVYESFNIAALWNLNVIYVIENNQ-YAM---- 222 (364)
Q Consensus 149 ~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~lPvifvvenN~-~ai---- 222 (364)
.++.+..++-|-.+|.|+|+-+| +.+-.++++.|||. .+.|-=| +-.|+..|..+.++|.||+ |++
T Consensus 61 --~~~~~~ht~HGRala~AtGiK~A----nPdl~Viv~~GDGD~~aIGgnH--~iHAaRRN~dit~Iv~NN~iYGmTgGQ 132 (281)
T PRK09628 61 --VNCNTVHTTHGRAVAYATGIKLA----NPSKHVIVVSGDGDGLAIGGNH--TIHGCRRNIDLNHILINNFIYGLTNSQ 132 (281)
T ss_pred --EECCCEEHHHCCHHHHHHHHHHH----CCCCEEEEEECCCHHHHCHHHH--HHHHHHHCCCCEEEEECCEEEECCCCC
T ss_conf --76372631112508889999986----8997699981574042030889--999998089928999877723037885
Q ss_pred ---CCCCCCCCC---------CCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf ---444323214---------8643577777631111-210000233688754210245545465589831566887666
Q gi|255764490|r 223 ---GTSVSRASA---------QTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSM 289 (364)
Q Consensus 223 ---st~~~~~~~---------~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~ 289 (364)
.||....+. .-++...+.+.|...+ +.--.|+..+.+.+++|+++ +|+.|||+.+-..- +-
T Consensus 133 ~SPTTp~G~~T~TtP~G~~e~p~d~~~la~aaGatfVAR~~~~~~~~l~~~ik~Ai~h----kGfS~VevlspCpt--~~ 206 (281)
T PRK09628 133 TSPTTPKGMWTVTAQWGNIDPNFDACKLATAAGASFVARESVIDPKKLEKLLVKGFSH----KGFSFFDVFSNCHI--NL 206 (281)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCC----CCCEEEEEECCCCC--CC
T ss_conf 6989999875666899987899699999987699789987048999999999999659----99679999568988--75
Q ss_pred CCCCCCCCHHHHHHH-HHHCCHHHHHHH
Q ss_conf 787667899999998-983893799999
Q gi|255764490|r 290 SDPANYRTREEINEM-RSNHDPIEQVRK 316 (364)
Q Consensus 290 ~D~~~YR~~~Ei~~~-~~~~DPI~~~~~ 316 (364)
+-..++++..|.-+| ++...|+.++.+
T Consensus 207 gr~Nk~~~~~~~~~~~k~~~~~~~~~~~ 234 (281)
T PRK09628 207 GRKNKMGEAVQMLEWIKSRTVSKRKFDA 234 (281)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf 5316867779999999873777788652
No 104
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase; InterPro: IPR005477 DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. DXP synthase is found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis . In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding . This family includes transketolase enzymes 2.2.1.1 from EC. and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0008661 1-deoxy-D-xylulose-5-phosphate synthase activity, 0016114 terpenoid biosynthetic process.
Probab=98.51 E-value=1.1e-06 Score=62.96 Aligned_cols=198 Identities=21% Similarity=0.318 Sum_probs=131.3
Q ss_pred CCCCCCCCHHHHHHHHHHHCC-CCCE-EE-ECCCCHHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 722058987899999996238-9989-99-430068999997421-2222343210123443455677321112212367
Q gi|255764490|r 80 GFCHLCIGQEAVIVGMKMSLT-EGDQ-MI-TAYREHGHILACGVD-ASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYG 155 (364)
Q Consensus 80 g~~~~~~GqEa~~vg~~~al~-~~D~-~~-~~yR~~~~~l~~G~~-~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~ 155 (364)
|....+.|---..+++-..++ +.|. ++ ..|....|-+..|-- -...+.+.-|-..-...+. .+..+ -
T Consensus 38 g~~~~~lg~~~l~~~~~~~~~~~~~~~~wd~g~~~y~~~~l~g~~~~~~~~~~~~g~~~~~~~~~--------~~~d~-~ 108 (627)
T TIGR00204 38 GHLGPGLGVVELTVALHYLFDTPKDPLIWDVGHQAYPHKLLTGRGEEFSTLRQKDGLHGFPKRSE--------SEYDV-F 108 (627)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCC--------CCCCE-E
T ss_conf 53334442334565567654276433033134202234444124113344443056677777654--------22100-0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCHHHHHHHCCCCCCCCCCCCCCCCC-
Q ss_conf 6674667674325431001123344443310256654302456765443211-40111022103434444432321486-
Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALW-NLNVIYVIENNQYAMGTSVSRASAQT- 233 (364)
Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~-~lPvifvvenN~~aist~~~~~~~~~- 233 (364)
..|.-.+.+..++|.|.+...++.+..++|.+|||+.+.|.++|++|.++-. +.+++.++.||..+++.+.......-
T Consensus 109 ~~g~~~~~~~~g~g~~~~~~~~~~~~~~~~~~gdg~~~~g~~~~~~~~~g~~p~~~~~~~l~d~~~~~~~~~g~~~~~l~ 188 (627)
T TIGR00204 109 GAGHSSTSISAGLGVALARDLKGADGKPVCLIGDGALTGGLALEALNHAGDLPKTDLLVILNDNEMSISPNVGALSNHLG 188 (627)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 12543101233444566654311366136764153012346777666412567765388873753222443247888888
Q ss_pred -----------------------C-------HHHHH----HH------------HHHHHH-HHHCCHHHHHHHHHHHHCC
Q ss_conf -----------------------4-------35777----77------------631111-2100002336887542102
Q gi|255764490|r 234 -----------------------N-------FSKRG----VS------------FNIPGM-QVDGMDIRAVKATMDKAVA 266 (364)
Q Consensus 234 -----------------------~-------i~~ra----~~------------~gi~~~-~vDG~D~~~v~~~~~~a~~ 266 (364)
. ..+|. ++ .|+.++ .+||+|+.++.+.++.+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~lg~~y~gp~~g~~~~~~~~~~~~~~~ 268 (627)
T TIGR00204 189 RLRSGSLYQSLRDGLKKLLKKLPPVGNYLAPLAERVEESLKGLLVPPVGTLFEELGFNYLGPVDGHDLSELIETLKNAKK 268 (627)
T ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCEECCCCCHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHH
T ss_conf 76402102345534678764145101355677887665320000143002334305410066565307899998887652
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 455454655898315668876667
Q gi|255764490|r 267 YCRAHKGPIIIEMLTYRYRGHSMS 290 (364)
Q Consensus 267 ~~r~~~gP~lie~~tyR~~gHs~~ 290 (364)
-++|+++|+.|.+-.|...+
T Consensus 269 ----~~gp~~~~~~~~~g~gy~~~ 288 (627)
T TIGR00204 269 ----LKGPVLLHVSTKKGKGYKPA 288 (627)
T ss_pred ----CCCCEEEEEEECCCCCCCCC
T ss_conf ----37853788762157764433
No 105
>TIGR02418 acolac_catab acetolactate synthase, catabolic; InterPro: IPR012782 Acetolactate synthase is a thiamin pyrophosphate-dependent enzyme that combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. It exists in two distinct forms that have different properties, though they are clearly related , . The biosynthetic form, found in plants, fungi and bacteria, is involved in the biosynthesis of branched-chain amino acids and contains non-catalytic FAD. The catabolic form is found only in some bacteria, participates in butanediol fermentation, and does not contain FAD. This entry represents the catabolic form of acetolactate synthase, generally found in species that posses acetolactate decarboxylase, which is often encoded in the same operon. The enzyme is thought to be a homotetramer, though this has not conclusively been shown. Each monomer consists of three distinct domains, designated, starting from the N-terminus, as alpha, beta and gamma . The core of the alpha and gamma domains is a six-stranded parallel beta sheet surrounded by alpha helices, while the the beta domain forms a double Rossman fold. The thiamin pyrophosphate cofactor has an unusual conformation that has not been seen in other enzymes using this cofactor, including the biosynthetic form of acetolactate synthase. The active site is located in a funnel at the dimer interface, bordered by residues from all three domains.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding.
Probab=98.45 E-value=7.1e-08 Score=70.60 Aligned_cols=119 Identities=23% Similarity=0.390 Sum_probs=84.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH-C-CCCCCC-----
Q ss_conf 123676674667674325431001123344443310256654302456765443211401110221-0-343444-----
Q gi|255764490|r 151 NGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIE-N-NQYAMG----- 223 (364)
Q Consensus 151 ~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvve-n-N~~ais----- 223 (364)
..++-.||-. .+.+|.=||.+..+.+.+.-+|..-|||+.-+-. .| |-.|...|||+|.||+ | |.|-|=
T Consensus 409 R~lLiSNGmQ--TlGVALPWAI~AaLlrP~~KVVSVSGDGGFLfSs-mE-LETAVRLk~nIvHIiWnDn~~YnMV~fQE~ 484 (553)
T TIGR02418 409 RHLLISNGMQ--TLGVALPWAIGAALLRPNTKVVSVSGDGGFLFSS-ME-LETAVRLKLNIVHIIWNDNNKYNMVEFQEE 484 (553)
T ss_pred CEEEEECCCC--HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH-HH-HHHHHHHHCCEEEEEEECCCCCCHHHHHHH
T ss_conf 4024335750--3111218999999738897589987283120025-78-899998408948999704899766789776
Q ss_pred CCCC-CC----CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--CCCCCCCCCCEEEEE
Q ss_conf 4432-32----14864357777763111121000023368875421--024554546558983
Q gi|255764490|r 224 TSVS-RA----SAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKA--VAYCRAHKGPIIIEM 279 (364)
Q Consensus 224 t~~~-~~----~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a--~~~~r~~~gP~lie~ 279 (364)
.... |. ++.-|+.+.|++||-.|++|+-.| +.-.+.++| .+ ..||+||.+
T Consensus 485 ~KY~GR~sGVdFGpvDfvkYAESFGA~GlrV~~~d--~L~~tLr~Ali~~----~eGPvvvdi 541 (553)
T TIGR02418 485 MKYKGRSSGVDFGPVDFVKYAESFGAKGLRVESPD--ELEPTLRQALIME----VEGPVVVDI 541 (553)
T ss_pred HCCCCCCCCEEECCCCCEEECCCCCCCCCCCCCHH--HHHHHHHHHCEEC----CCCCEEEEE
T ss_conf 32355201310066050210102484324328978--9999987412022----788889984
No 106
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=98.44 E-value=2.3e-07 Score=67.35 Aligned_cols=180 Identities=24% Similarity=0.343 Sum_probs=109.6
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78987772205898789999999623899899943006899999742122223432101234434556773211122123
Q gi|255764490|r 74 GMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGF 153 (364)
Q Consensus 74 ~qg~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~ 153 (364)
..+.-..||+.| |+-.+.-++..++.+ .|+++.++. .-...||+ +|- .|+. +.
T Consensus 13 ~~~~p~~wCpGC-G~~~il~~i~~A~~e----------------l~~~p~~~v---~vsGIGCs-~~~--~~y~----~~ 65 (306)
T PRK05778 13 YDGLPTTWCPGC-GNFSILNAFIQALAE----------------LGLDPDRVV---VVSGIGCS-SKT--PGYF----LS 65 (306)
T ss_pred CCCCCCCCCCCC-CCHHHHHHHHHHHHH----------------CCCCCCCEE---EEECCCCC-CCC--CCEE----EC
T ss_conf 689977658999-858999999999998----------------099967789---99576676-152--7848----85
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCC-------CC
Q ss_conf 67667466767432543100112334444331025665-4302456765443211401110221034-344-------44
Q gi|255764490|r 154 YGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGA-ANQGQVYESFNIAALWNLNVIYVIENNQ-YAM-------GT 224 (364)
Q Consensus 154 ~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~lPvifvvenN~-~ai-------st 224 (364)
.+.+++=|-.+|+|+|+.+| +.+-.++++-|||. .+.|.= .|-.|...+.++.+||.||+ |+. +|
T Consensus 66 ~~~h~~HGRa~~~AtGiK~a----npdl~Vi~~~GDGd~~~IG~~--hl~ha~rRN~dit~Iv~nN~vYglTgGQ~SpTt 139 (306)
T PRK05778 66 HGLHTLHGRAIAFATGAKLA----NPDLKVIVVGGDGDLASIGGG--HFIHAGRRNVDITVIVENNGVYGLTKGQASPTT 139 (306)
T ss_pred CCEEECCCCHHHHHHHHHHH----CCCCEEEEEECCCCHHCCCHH--HHHHHHHHCCCCEEEEECCHHHCCCCCCCCCCC
T ss_conf 75301114418899899876----889869999357612113178--789999838994699987633233688669899
Q ss_pred CCCCCCC---------CCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEEC--CCCCCCCCCC
Q ss_conf 4323214---------8643577777631111-210000233688754210245545465589831--5668876667
Q gi|255764490|r 225 SVSRASA---------QTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEML--TYRYRGHSMS 290 (364)
Q Consensus 225 ~~~~~~~---------~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~--tyR~~gHs~~ 290 (364)
|....+. .-++...+.+.|.+.+ +.-.-|+..+.+.+++|+++ +|+.|||+. |.-+.+|..+
T Consensus 140 p~G~~t~ttp~G~~~~p~n~~~la~a~ga~fVAR~~~~~~~~l~~~ik~Ai~h----kGfs~i~VlspC~Tfn~~~~~ 213 (306)
T PRK05778 140 PRGSKTKTLPYGNIEPPIDPCALALAAGATFVARSFSGDVKQLKELIKKAISH----KGFAFIDVLSPCVTFNGRRNS 213 (306)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCC----CCCEEEEEECCCCCCCCCCCC
T ss_conf 99874664789986788699999997699869987547889999999999669----996799996789734586655
No 107
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=98.42 E-value=5e-06 Score=58.79 Aligned_cols=123 Identities=21% Similarity=0.221 Sum_probs=80.6
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH-HHHHHHCCCCCCCCCCCCCCCCCCHHHH----HHHHHH--------
Q ss_conf 344443310256654302456765443211401-1102210343444443232148643577----777631--------
Q gi|255764490|r 178 RSDKICVVCFGDGAANQGQVYESFNIAALWNLN-VIYVIENNQYAMGTSVSRASAQTNFSKR----GVSFNI-------- 244 (364)
Q Consensus 178 ~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lP-vifvvenN~~aist~~~~~~~~~~i~~r----a~~~gi-------- 244 (364)
.+++.++||+|||.+.|+...+++.+|+.++|- ++|||.-|.-....|+.... .|.++ ..|+||
T Consensus 219 ~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVrgng---kiiqelE~~FrgaGWnVikviWg 295 (887)
T COG2609 219 TSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNG---KIIQELEGIFRGAGWNVIKVIWG 295 (887)
T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCC---HHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 778739999557556770356899999984667549999656110588414773---54999998860378518999724
Q ss_pred -------------------------------------------------------------HHHHHHCCHHHHHHHHHHH
Q ss_conf -------------------------------------------------------------1112100002336887542
Q gi|255764490|r 245 -------------------------------------------------------------PGMQVDGMDIRAVKATMDK 263 (364)
Q Consensus 245 -------------------------------------------------------------~~~~vDG~D~~~v~~~~~~ 263 (364)
.-+.--|+|+..||+++++
T Consensus 296 ~~wd~ll~~d~~gkL~~~m~e~~dgdyqt~ka~dGayvRehff~~~pe~~aLVa~~tD~diw~L~rGGHD~~kv~aA~~~ 375 (887)
T COG2609 296 RRWDELLAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWALNRGGHDPEKVYAAFKK 375 (887)
T ss_pred CCHHHHHCCCCCCHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 40788860367446999998565523666400563999998715675889999863688999986379987999999999
Q ss_pred HCCCCCCCCCCEEEEECCCCCCC---CCCCC---CC-CCCCHHHHHHHHH
Q ss_conf 10245545465589831566887---66678---76-6789999999898
Q gi|255764490|r 264 AVAYCRAHKGPIIIEMLTYRYRG---HSMSD---PA-NYRTREEINEMRS 306 (364)
Q Consensus 264 a~~~~r~~~gP~lie~~tyR~~g---Hs~~D---~~-~YR~~~Ei~~~~~ 306 (364)
|.+. ..+|++|-++|..-+| +..+- ++ +--+.+.++..|.
T Consensus 376 A~~~---kg~PtvilA~TIKGyglg~~~eg~n~aHq~kkm~~~~l~~~Rd 422 (887)
T COG2609 376 AQEH---KGRPTVILAKTIKGYGLGEAAEGKNIAHQVKKMTPDQLKEFRD 422 (887)
T ss_pred HHCC---CCCCEEEEEEEECCCCCCHHHCCCCHHHHHHCCCHHHHHHHHH
T ss_conf 8537---8997599976302466770101366355562389999999986
No 108
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=98.37 E-value=4.8e-07 Score=65.27 Aligned_cols=152 Identities=14% Similarity=0.149 Sum_probs=100.1
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCC-CCCHHHHHHH
Q ss_conf 101234434556773211122123676674667674325431001123-------34444331025665-4302456765
Q gi|255764490|r 130 TGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYR-------RSDKICVVCFGDGA-ANQGQVYESF 201 (364)
Q Consensus 130 ~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~-------~~~~v~v~~~GDGa-~~eG~f~Eal 201 (364)
+....||+.--.....+. ..++...++.-|...+.|+|+..|.+-+ +.+..++++-|||. .+.|- ..+
T Consensus 32 iv~~iGCs~~~~~~~~~~--~~~~~~ih~~hgra~a~AtGik~a~~~~~~~~~~~~~~~~Vv~~~GDGd~~~IG~--~~l 107 (237)
T cd02018 32 IANSTGCSSVYASTAPFN--SWAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIGF--GAL 107 (237)
T ss_pred EEECCCCCCCCCCCCCCC--CCCCCEEHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHCCH--HHH
T ss_conf 996876686426646566--6477522001233188899999999873111101257886899955735765007--889
Q ss_pred HHHHHCCCHHHHHHHCCC-CCC-------CCCC---------CCCCCCCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHH
Q ss_conf 443211401110221034-344-------4443---------232148643577777631111-2100002336887542
Q gi|255764490|r 202 NIAALWNLNVIYVIENNQ-YAM-------GTSV---------SRASAQTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDK 263 (364)
Q Consensus 202 n~A~~~~lPvifvvenN~-~ai-------st~~---------~~~~~~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~ 263 (364)
.-|...+.++++||.||+ |+. +||. .+.....++...+.+.|++++ ++.-.|+..+.+.+++
T Consensus 108 ~ha~~Rn~~i~~I~~dN~~Yg~TggQ~SptTp~G~~T~ttp~G~~~~~~~~~~ia~~~g~~yVAr~s~~~~~~~~k~~~~ 187 (237)
T cd02018 108 SHSLFRGEDITVIVLDNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKE 187 (237)
T ss_pred HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHH
T ss_conf 99998289839999888134467884798998987130168997678879999998659958999855999999999999
Q ss_pred HCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 1024554546558983156688766
Q gi|255764490|r 264 AVAYCRAHKGPIIIEMLTYRYRGHS 288 (364)
Q Consensus 264 a~~~~r~~~gP~lie~~tyR~~gHs 288 (364)
|+.+ .+||.|||+.+-...++-
T Consensus 188 A~~~---~~G~s~v~vlspCpt~w~ 209 (237)
T cd02018 188 AISR---TDGPTFIHAYTPCITEWG 209 (237)
T ss_pred HHHC---CCCCEEEEEECCCCCCCC
T ss_conf 9865---999889999748988989
No 109
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=98.33 E-value=1.9e-06 Score=61.45 Aligned_cols=154 Identities=21% Similarity=0.217 Sum_probs=97.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCC-------C
Q ss_conf 36766746676743254310011233444433102566-54302456765443211401110221034-344-------4
Q gi|255764490|r 153 FYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDG-AANQGQVYESFNIAALWNLNVIYVIENNQ-YAM-------G 223 (364)
Q Consensus 153 ~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDG-a~~eG~f~Ealn~A~~~~lPvifvvenN~-~ai-------s 223 (364)
....++.-|-..+.|+|+.+|.+.+ .++++-||| +...|-= .|--|...+..|.++|-||+ |+. +
T Consensus 65 ~~~~hs~~gra~a~atGik~A~~~l----~Viv~gGDG~~~dIG~~--~l~ha~~Rn~dit~iv~DNevYgnTggQ~S~t 138 (294)
T COG1013 65 PPWVHSLHGRAAAVATGIKLANPAL----SVIVIGGDGDAYDIGGN--HLIHALRRNHDITYIVVDNEVYGNTGGQASPT 138 (294)
T ss_pred CCCEEECCCCCHHHHHHHHHHHHCC----EEEEEECCCHHHHCCHH--HHHHHHHCCCCEEEEEECCEECCCCCCCCCCC
T ss_conf 8723200256234577799751077----49999056077541016--77899970798599997770045678735889
Q ss_pred CCCCCCCC----------CCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 44323214----------8643577777631111-210000233688754210245545465589831566887666787
Q gi|255764490|r 224 TSVSRASA----------QTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDP 292 (364)
Q Consensus 224 t~~~~~~~----------~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D~ 292 (364)
||...++. ..++...+.++|.+.+ ++--.|+....+.+++|+++ +||.||++.+-.-.+ .+.
T Consensus 139 Tp~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~~A~~~----~Gps~I~v~sPC~t~---~~~ 211 (294)
T COG1013 139 TPKGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEH----KGPSFIDVLSPCPTG---NGR 211 (294)
T ss_pred CCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHC----CCCEEEEEECCCCCC---CCC
T ss_conf 8688760336898776787799999987699769997035989999999999856----797699996688677---875
Q ss_pred CCCCCHHHHHHHH-HHCCHHHHHHHHHH
Q ss_conf 6678999999989-83893799999999
Q gi|255764490|r 293 ANYRTREEINEMR-SNHDPIEQVRKRLL 319 (364)
Q Consensus 293 ~~YR~~~Ei~~~~-~~~DPI~~~~~~L~ 319 (364)
..+.+-++-..+- ...||+-++.....
T Consensus 212 ~~~~~~~~~~~ave~~~~pl~~~~~~~~ 239 (294)
T COG1013 212 NTMKTIEEAKLAVETGYWPLYRYEPGKA 239 (294)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCH
T ss_conf 5017999999998638751023377533
No 110
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.27 E-value=1.6e-06 Score=61.94 Aligned_cols=172 Identities=24% Similarity=0.364 Sum_probs=105.5
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97898777220589878999999962389989994300689999974212222343210123443455677321112212
Q gi|255764490|r 73 YGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNG 152 (364)
Q Consensus 73 ~~qg~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~ 152 (364)
|+..+-.-||..| |+-.+.-++..+|.+ .|+++.++. +-..-||+ || ..|+ .+
T Consensus 9 y~~~~~~~WCpGC-G~~~Il~a~~~al~e----------------l~~~~~~~v---~vSGIGCs-~r--~p~y----~~ 61 (286)
T PRK11866 9 YAVKRPPIWCPGC-GNYGILEALRRALAE----------------LGIPPENVV---VVSGIGCS-SN--LPEF----LN 61 (286)
T ss_pred CCCCCCCCCCCCC-CCHHHHHHHHHHHHH----------------CCCCCCCEE---EEECCCCC-CC--CCCC----EE
T ss_conf 0889998668999-718999999999998----------------599966389---98277766-30--5050----75
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCC-------C
Q ss_conf 367667466767432543100112334444331025665-4302456765443211401110221034-344-------4
Q gi|255764490|r 153 FYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGA-ANQGQVYESFNIAALWNLNVIYVIENNQ-YAM-------G 223 (364)
Q Consensus 153 ~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~lPvifvvenN~-~ai-------s 223 (364)
..+.+++-|-.+|+|+|+-+| +.+-.++++.|||. .+.|.=| +-.|...|..+.++|.||+ |+. +
T Consensus 62 ~~~~h~lHGRalp~AtGiK~A----nPdL~Viv~~GDGD~~~IG~nh--~ihA~rRN~dit~iv~nN~iYGlTgGQ~SpT 135 (286)
T PRK11866 62 TYGIHGIHGRLLPIATGVKWA----NPKLTVIAYGGDGDGYGIGLQH--LIHAARRNVDITYIVSNNQVYGLTTGQASPT 135 (286)
T ss_pred CCCEEHHHCCCHHHHHHHHHH----CCCCEEEEEECCCCHHCCHHHH--HHHHHHHCCCCEEEEECCHHHCCCCCCCCCC
T ss_conf 262402212506889999875----8997799992687320423889--9999984899379998874321478968989
Q ss_pred CCCCCCCCC---------CCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf 443232148---------643577777631111-2100002336887542102455454655898315
Q gi|255764490|r 224 TSVSRASAQ---------TNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364)
Q Consensus 224 t~~~~~~~~---------~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364)
||....+.. -+....+.+.|...+ +.-..|+..+.+.+++|++ .+|+.|||+..
T Consensus 136 Tp~G~~T~ttP~G~~~~p~np~~la~a~gatfVAR~~~~~~~~l~~~ik~Ai~----hkGfs~VeVls 199 (286)
T PRK11866 136 TPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKKAIK----HKGFSFIDVLS 199 (286)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHC----CCCCEEEEEEC
T ss_conf 99988576479998778979999999879988997704799999999999977----99967999978
No 111
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=98.24 E-value=7.8e-07 Score=63.93 Aligned_cols=147 Identities=20% Similarity=0.187 Sum_probs=95.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH-HHHHHHCCCCCCCCCCCC
Q ss_conf 6746676743254310011233-------44443310256654302456765443211401-110221034344444323
Q gi|255764490|r 157 HGIVGAQVSLGTGIAFANKYRR-------SDKICVVCFGDGAANQGQVYESFNIAALWNLN-VIYVIENNQYAMGTSVSR 228 (364)
Q Consensus 157 ~~~vg~~~p~A~G~A~a~k~~~-------~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lP-vifvvenN~~aist~~~~ 228 (364)
++.+|=+...|+=.|...||.. +++-++||+|||.+.|+..++|+.+|+..+|- ++|||.=|.-....|+-.
T Consensus 191 TvSmGLGp~~aiyqArf~rYl~~rgl~~~~~~kvwaflGDgEmDEpes~gai~~A~re~LdNlifVVncNlQrLDGpVrG 270 (886)
T PRK09405 191 TVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRG 270 (886)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
T ss_conf 50625107899999999999984599777887389995365557534688999999840586699997775457886268
Q ss_pred CCC-CCCHHHHHHHHHHH--------------------------------------------------------------
Q ss_conf 214-86435777776311--------------------------------------------------------------
Q gi|255764490|r 229 ASA-QTNFSKRGVSFNIP-------------------------------------------------------------- 245 (364)
Q Consensus 229 ~~~-~~~i~~ra~~~gi~-------------------------------------------------------------- 245 (364)
... ...+.....|.||.
T Consensus 271 ngkIIqELE~~FrgAGWnVIkviwG~~wd~Lfa~d~~g~L~~~m~e~~DgeyQ~~~~~~Gay~Re~ffg~~pel~~LV~~ 350 (886)
T PRK09405 271 NGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQRMNETVDGDYQTYKAKDGAYVREHFFGKYPETAALVAD 350 (886)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHH
T ss_conf 51799999998854796189982151689998337856699999984037888784187999999872899789999851
Q ss_pred -------HHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCC---CCCC---C-CCCCHHHHHHHHH
Q ss_conf -------1121000023368875421024554546558983156688766---6787---6-6789999999898
Q gi|255764490|r 246 -------GMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHS---MSDP---A-NYRTREEINEMRS 306 (364)
Q Consensus 246 -------~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs---~~D~---~-~YR~~~Ei~~~~~ 306 (364)
-+.--|+|+..||++.++|++. ..+|++|-++|..-+|-- .++. + +--+.++++.+|.
T Consensus 351 lSD~ei~~L~rGGHD~~KvyaAy~~A~~~---kgrPTVILA~TVKGyGlg~ageg~N~aHQ~Kkl~~e~l~~fRd 422 (886)
T PRK09405 351 MSDDDIWALNRGGHDPRKVYAAYKAAVEH---KGQPTVILAKTIKGYGMGEAGEGKNIAHQVKKLDLDDLKHFRD 422 (886)
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHC---CCCCEEEEEEEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHH
T ss_conf 89999998652699989999999999736---8998599988764266674444542011003599999999999
No 112
>KOG1185 consensus
Probab=98.21 E-value=1.3e-06 Score=62.59 Aligned_cols=112 Identities=24% Similarity=0.359 Sum_probs=78.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCC-C-CCCCCCCCC-------------
Q ss_conf 7432543100112334444331025665430245676544321140111022103-4-344444323-------------
Q gi|255764490|r 164 VSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENN-Q-YAMGTSVSR------------- 228 (364)
Q Consensus 164 ~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN-~-~aist~~~~------------- 228 (364)
+.+..|+|+|.+.-..++-++|..||++..=... | +-.+..+|||++.+|-|| + |+..+...+
T Consensus 432 MGVG~Gfalaaa~~~P~~~V~~veGDsaFGfSaM-E-~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~e~~~~~~~p~ 509 (571)
T KOG1185 432 MGVGLGFALAAALAAPDRKVVCVEGDSAFGFSAM-E-LETFVRYKLPVVIVVGNNNGIYGLDDDGWKQISEQDPTLDLPP 509 (571)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHH-H-HHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCC
T ss_conf 5545157778776279973899964765571056-5-8888871687699996288634667644888851685568984
Q ss_pred --CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf --214864357777763111121000023368875421024554546558983156
Q gi|255764490|r 229 --ASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTY 282 (364)
Q Consensus 229 --~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ty 282 (364)
-.+..++-+.+++||..|+.|+ .+.++..+.+++.. .+.+|++|.+.--
T Consensus 510 ~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q---~~~~psvINVlI~ 560 (571)
T KOG1185 510 TALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQ---DTDKPSVINVLIG 560 (571)
T ss_pred CCCCCCCCHHHHHHHCCCCCEEEC--CHHHHHHHHHHHHH---CCCCCEEEEEEEC
T ss_conf 012443569999987188863647--89999999999985---4799768999866
No 113
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=98.17 E-value=1.3e-06 Score=62.52 Aligned_cols=166 Identities=23% Similarity=0.352 Sum_probs=100.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77220589878999999962389989994300689999974212222343210123443455677321112212367667
Q gi|255764490|r 79 GGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHG 158 (364)
Q Consensus 79 ~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~ 158 (364)
..||..| |+-.+.-++..+|.+ .|+++.++. +-..-||| || +. .-.+..+..+
T Consensus 16 ~~wCPGC-G~~~il~~~~~al~e----------------lg~~~~~~v---~vsGIGCs-~r-----~~-~y~~~~~~ht 68 (280)
T PRK11867 16 PRWCPGC-GDGAILAALQRALAE----------------LGLDPENVA---VVSGIGCS-SR-----LP-YYINTYGFHT 68 (280)
T ss_pred CCCCCCC-CCHHHHHHHHHHHHH----------------CCCCCCCEE---EEECCCCC-CC-----CH-HHEEECCCCC
T ss_conf 7168999-549999999999998----------------399902189---99631577-32-----24-1435367132
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCC-------CCCCCCC
Q ss_conf 466767432543100112334444331025665-4302456765443211401110221034-344-------4443232
Q gi|255764490|r 159 IVGAQVSLGTGIAFANKYRRSDKICVVCFGDGA-ANQGQVYESFNIAALWNLNVIYVIENNQ-YAM-------GTSVSRA 229 (364)
Q Consensus 159 ~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~lPvifvvenN~-~ai-------st~~~~~ 229 (364)
+=|-.+|+|+|+.+| +.+-.++++.|||. .+.|-=| +-.|...|+.+.++|.||+ |++ .||....
T Consensus 69 ~HGRa~~~AtGiK~a----nPdl~Viv~~GDGD~~~IGgnH--~iHA~rRN~dit~iv~nN~iYGlT~GQ~SpTt~~G~~ 142 (280)
T PRK11867 69 IHGRALAFATGLKLA----NPDLTVIVVTGDGDALAIGGNH--FIHALRRNIDITIILFNNQIYGLTKGQYSPTSPVGFV 142 (280)
T ss_pred CCCCCHHHHHHHHHH----CCCCEEEEEECCCCHHHCHHHH--HHHHHHHCCCCEEEEECCEEECCCCCCCCCCCCCCCC
T ss_conf 457607899999876----8997699992266032023888--9999980898189998882010257855889999887
Q ss_pred CCC---------CCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf 148---------643577777631111-2100002336887542102455454655898315
Q gi|255764490|r 230 SAQ---------TNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364)
Q Consensus 230 ~~~---------~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364)
+.. -+....+.+.|...+ |.-.-|+..+.+.+++|+++ +|+.|||+..
T Consensus 143 t~ttP~G~~~~p~n~~~la~~aGatfVAR~~~~~~~~l~~~ik~A~~h----kGfs~Vevls 200 (280)
T PRK11867 143 TKTTPYGSIDPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAINH----KGFSFVEILQ 200 (280)
T ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCC----CCCEEEEEEC
T ss_conf 677889988799799999997799379864027899999999999669----9967999967
No 114
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=98.09 E-value=8.1e-06 Score=57.42 Aligned_cols=117 Identities=22% Similarity=0.312 Sum_probs=76.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHCC-CHHHHHHHCCCCCCCCCCC
Q ss_conf 123676674667674325431001123344443310256654--3024567654432114-0111022103434444432
Q gi|255764490|r 151 NGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAA--NQGQVYESFNIAALWN-LNVIYVIENNQYAMGTSVS 227 (364)
Q Consensus 151 ~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~--~eG~f~Ealn~A~~~~-lPvifvvenN~~aist~~~ 227 (364)
.+|+ +.|..|...++|.|+|++. +++-++|+-|||+. .-|. |-..+..+ -.+++||-||+---||--.
T Consensus 215 ~~F~-~vG~MG~as~ialG~al~~----~~~~Vi~lDGDGs~LMh~Gs----lati~~~~~~Nl~hivlnN~~h~SvGgQ 285 (361)
T TIGR03297 215 RDFL-TVGSMGHASQIALGLALAR----PDQRVVCLDGDGAALMHMGG----LATIGTQGPANLIHVLFNNGAHDSVGGQ 285 (361)
T ss_pred CCEE-ECCCCCHHHHHHHHHHHHC----CCCEEEEEECCHHHHHCCCH----HHHHHHCCCCCEEEEEEECCCCCCCCCC
T ss_conf 5357-3488514769999998628----89708999086899854406----8788743887479999828843255896
Q ss_pred C-CCCCCCHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf 3-21486435777776311-1121000023368875421024554546558983156
Q gi|255764490|r 228 R-ASAQTNFSKRGVSFNIP-GMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTY 282 (364)
Q Consensus 228 ~-~~~~~~i~~ra~~~gi~-~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ty 282 (364)
. .....++...|++.|+. +++|+ +..++.++++ .+++..||+|||+++-
T Consensus 286 pT~~~~idf~~iA~a~Gy~~~~~v~--~~~~l~~~l~----~~~~~~Gp~fi~v~i~ 336 (361)
T TIGR03297 286 PTVSQHLDFAQIAKACGYAKVYEVS--TLEELETALT----AASSANGPRLIEVKVR 336 (361)
T ss_pred CCCCCCCCHHHHHHHCCCCEEEEEC--CHHHHHHHHH----HHHHCCCCEEEEEEEC
T ss_conf 7777787999999975997499977--9999999999----9983899989999977
No 115
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=98.04 E-value=2.5e-06 Score=60.75 Aligned_cols=122 Identities=17% Similarity=0.278 Sum_probs=73.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHCCCCCCCCCCCCC----
Q ss_conf 7667466767432543100112334444331025665430245676544321140-11102210343444443232----
Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNL-NVIYVIENNQYAMGTSVSRA---- 229 (364)
Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~l-PvifvvenN~~aist~~~~~---- 229 (364)
+..|.+|-.+|-|.|+++|.+ ++-++.|+|||+..-- +.| +..--.|+| |+||++.|+||-|---....
T Consensus 408 ~lWGSIG~t~pAalGa~~A~~----drR~IL~iGDGs~QlT-vQE-iStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~Y 481 (557)
T COG3961 408 PLWGSIGYTLPAALGAALAAP----DRRVILFIGDGSLQLT-VQE-ISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPY 481 (557)
T ss_pred CCHHHCCCCCHHHHHHHHCCC----CCCEEEEECCCHHHHH-HHH-HHHHHHCCCCCEEEEECCCCCEEEEHHCCCCCCC
T ss_conf 000110434276531555187----7517999727336646-999-9999974898179999389728875011887674
Q ss_pred --CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC-CCCCCEEEEECCCCC
Q ss_conf --1486435777776311112100002336887542102455-454655898315668
Q gi|255764490|r 230 --SAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCR-AHKGPIIIEMLTYRY 284 (364)
Q Consensus 230 --~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r-~~~gP~lie~~tyR~ 284 (364)
-...++.+.-++||....+.- -...+.+-.+.+.+.+- ...++.|||++.-++
T Consensus 482 NdI~~Wd~~~l~~afg~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~i~lIEv~lp~~ 537 (557)
T COG3961 482 NDIQSWDYTALPEAFGAKNGEAK--FRATTGEELALALDVAFANNDRIRLIEVMLPVL 537 (557)
T ss_pred CCCCCCCHHHHHHHCCCCCCEEE--EEECCHHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 22124514320555088773378--862472788999988736788508999836824
No 116
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=97.97 E-value=4.3e-06 Score=59.20 Aligned_cols=119 Identities=22% Similarity=0.260 Sum_probs=78.7
Q ss_pred CCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH-HHHHHHCCCCCCCCCCCCCCC-CCCHH
Q ss_conf 3254310011233-------44443310256654302456765443211401-110221034344444323214-86435
Q gi|255764490|r 166 LGTGIAFANKYRR-------SDKICVVCFGDGAANQGQVYESFNIAALWNLN-VIYVIENNQYAMGTSVSRASA-QTNFS 236 (364)
Q Consensus 166 ~A~G~A~a~k~~~-------~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lP-vifvvenN~~aist~~~~~~~-~~~i~ 236 (364)
.|+=-|.=.||.. +++-+.||+|||.+.|-+---++++|+..+|. +||||+-|.--...|+.-... ...+.
T Consensus 197 ~aIYQArf~kYL~~Rgl~~~~~~kVWaflGDGEmDEPEs~gai~lA~rE~LDNLifVvNCNLQRLDGPVrGNgkIiqELE 276 (889)
T TIGR03186 197 NAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELE 276 (889)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf 89999999999986699876788289993587668713333321566605777699995676546888468528889988
Q ss_pred HHHH-----------------------------------------------------HH----------------HHHHH
Q ss_conf 7777-----------------------------------------------------76----------------31111
Q gi|255764490|r 237 KRGV-----------------------------------------------------SF----------------NIPGM 247 (364)
Q Consensus 237 ~ra~-----------------------------------------------------~~----------------gi~~~ 247 (364)
.... -| .|..+
T Consensus 277 ~~FrGAGWnVIKviWG~~WD~Ll~~D~~G~L~~rm~e~vDG~yQ~~~a~~Gay~Re~fFg~~pel~~lv~~~sD~~i~~L 356 (889)
T TIGR03186 277 SQFAGAGWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRL 356 (889)
T ss_pred HHHCCCCCCEEEEEECCCHHHHHHHCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 77355885269986678578998528856799998854472878763467899999980899899999850899999860
Q ss_pred HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 2100002336887542102455454655898315668876
Q gi|255764490|r 248 QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGH 287 (364)
Q Consensus 248 ~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gH 287 (364)
+--|+|+..||++.++|+++ .+.|++|-++|..-+|-
T Consensus 357 ~RGGHDp~KvyAAy~~A~~h---kG~PTVILakTvKGyGl 393 (889)
T TIGR03186 357 RRGGHDARKLYAAYDRAVRH---EGRPTVILAKTMKGFGM 393 (889)
T ss_pred HCCCCCHHHHHHHHHHHHHC---CCCCEEEEEECEEECCC
T ss_conf 15799829999999999857---89985998423243564
No 117
>TIGR00759 aceE 2-oxo-acid dehydrogenase E1 component, homodimeric type; InterPro: IPR004660 Most members of this family are pyruvate dehydrogenase complex, E1 component. It includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogenase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of Escherichia coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity. ; GO: 0016491 oxidoreductase activity.
Probab=97.94 E-value=9e-06 Score=57.12 Aligned_cols=154 Identities=19% Similarity=0.202 Sum_probs=95.6
Q ss_pred CCCCCCCCCCCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHCCCCCCCCCCCCCCC-CCCHHH
Q ss_conf 254310011233-------4444331025665430245676544321140-1110221034344444323214-864357
Q gi|255764490|r 167 GTGIAFANKYRR-------SDKICVVCFGDGAANQGQVYESFNIAALWNL-NVIYVIENNQYAMGTSVSRASA-QTNFSK 237 (364)
Q Consensus 167 A~G~A~a~k~~~-------~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~l-PvifvvenN~~aist~~~~~~~-~~~i~~ 237 (364)
|+==|.=.||.. .|.-|.||+|||-+.|-+---++.+|+..+| ++||||+=|.-=...|+.-... ...+..
T Consensus 203 AIYQARF~kYL~~RGlk~~~d~~VwaFLGDGEMDEPES~Ga~~~AarE~LDNL~FviNCNLQRLDGPVrGNGKIIQELEs 282 (905)
T TIGR00759 203 AIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLVFVINCNLQRLDGPVRGNGKIIQELES 282 (905)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99998987765404774202775899847875571877999876655237541788632130368754157412011243
Q ss_pred HHHHHHH---------------------------------------------------------------------HHHH
Q ss_conf 7777631---------------------------------------------------------------------1112
Q gi|255764490|r 238 RGVSFNI---------------------------------------------------------------------PGMQ 248 (364)
Q Consensus 238 ra~~~gi---------------------------------------------------------------------~~~~ 248 (364)
...|-|| .-++
T Consensus 283 lF~GAGWNVIKV~WGS~WD~Ll~~D~~G~L~~~m~~~vDG~yQT~kA~DGaY~REHFFn~~Pel~ALV~dmsD~dIw~Ln 362 (905)
T TIGR00759 283 LFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALN 362 (905)
T ss_pred HCCCCCCEEEEEECCCHHHHHHHHCCCCHHHHHHHHCCCCCEEECCCCCCCEECCCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 12688831788840885689987151337899985258973000002688631043468887899986167878999740
Q ss_pred HHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC---CCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCC
Q ss_conf 10000233688754210245545465589831566887---666787667899999998983893799999999878999
Q gi|255764490|r 249 VDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRG---HSMSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWAS 325 (364)
Q Consensus 249 vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~g---Hs~~D~~~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~t 325 (364)
==|+|+-.||+|.++|.+. .++||||=++|..-+| |..+=. .--..++ ..-|-|+.||+.+ +-- +|
T Consensus 363 RGGHD~~K~YAAy~~A~~~---KG~PTvILAkTiKGYg~g~~~e~rN----~AHQ~KK--l~~~~lk~fRD~f-~lP-ls 431 (905)
T TIGR00759 363 RGGHDPRKVYAAYAAAQEH---KGKPTVILAKTIKGYGLGDAAEARN----VAHQVKK--LEVDALKEFRDRF-ELP-LS 431 (905)
T ss_pred CCCCCHHHHHHHHHHHHCC---CCCCEEEECCCCCCCCCCHHHHHCC----HHHHHCC--CCHHHHHHHHHHC-CCC-CC
T ss_conf 6799738899999998628---9984786054346646764332201----3553056--6878898420002-488-77
Q ss_pred HHHHHH
Q ss_conf 899999
Q gi|255764490|r 326 EGDLKE 331 (364)
Q Consensus 326 e~e~~~ 331 (364)
++++++
T Consensus 432 D~QvE~ 437 (905)
T TIGR00759 432 DAQVEK 437 (905)
T ss_pred HHHHHH
T ss_conf 677730
No 118
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=97.89 E-value=8.4e-06 Score=57.33 Aligned_cols=162 Identities=21% Similarity=0.295 Sum_probs=112.9
Q ss_pred HHHHHHHHHCCCCCCCCCCCCC-------CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2222343210123443455677-------32111221236-766746676743254310011233444433102566543
Q gi|255764490|r 122 ASKIMAELTGRQGGISKGKGGS-------MHMFSTKNGFY-GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAAN 193 (364)
Q Consensus 122 ~~~~~ae~~gk~~g~~~Gr~gs-------~H~~~~~~~~~-~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~ 193 (364)
.++-|.+.||+..-+..-.|-| .|.+.|.+.+- +..|++|=.+|-|.|+--+ ..++-+|+..||=-..
T Consensus 375 vyeemn~~fgrd~~yvstiglsqia~aqflhv~~pr~wincgqagplgwtipaalgv~~a----dp~r~vvalsgdydfq 450 (592)
T COG3960 375 VYEEMNKAFGRDVCYVTTIGLSQIAAAQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAA----DPKRNVVAISGDYDFQ 450 (592)
T ss_pred HHHHHHHHCCCCCEEEEECCHHHHHHHHHEEECCCCCEEECCCCCCCCCCCCHHHCEEEC----CCCCCEEEEECCCHHH
T ss_conf 999998651886059974157777444431104774401047667765554144312422----8887569850572078
Q ss_pred CHHHHHHHHHHHHCCCHHHHHHHCCCCC---------CCCCCCCCCCCCCHH------------HHHHHHHHHHHHHHCC
Q ss_conf 0245676544321140111022103434---------444432321486435------------7777763111121000
Q gi|255764490|r 194 QGQVYESFNIAALWNLNVIYVIENNQYA---------MGTSVSRASAQTNFS------------KRGVSFNIPGMQVDGM 252 (364)
Q Consensus 194 eG~f~Ealn~A~~~~lPvifvvenN~~a---------ist~~~~~~~~~~i~------------~ra~~~gi~~~~vDG~ 252 (364)
-.-|-|...+.+|||-|.++.||-|- .+....-+.+.+++- ..++|.||..++| .
T Consensus 451 --fmieelavgaq~k~pyihv~vnnaylglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv--~ 526 (592)
T COG3960 451 --FLIEELAVGAQFKIPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV--F 526 (592)
T ss_pred --HHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEHHCCCCEEEEE--C
T ss_conf --789988622103685589996213789999987458953143330102688433566753001101267406881--5
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 023368875421024554546558983156688766678
Q gi|255764490|r 253 DIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSD 291 (364)
Q Consensus 253 D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D 291 (364)
+|.+.-.++.+|...+.+.+-|+++|+.--|...-|++.
T Consensus 527 ~p~e~a~af~~a~~lm~eh~vpvvve~ilervtnismgt 565 (592)
T COG3960 527 KPEDIAPAFEQAKALMAQHRVPVVVEVILERVTNISMGT 565 (592)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHCCCCCC
T ss_conf 877858999999999985679756104777750100023
No 119
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=97.86 E-value=1.4e-05 Score=55.89 Aligned_cols=170 Identities=20% Similarity=0.272 Sum_probs=100.5
Q ss_pred CCCC-CCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8987-772205898789999999623899899943006899999742122223432101234434556773211122123
Q gi|255764490|r 75 MGMV-GGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGF 153 (364)
Q Consensus 75 qg~i-~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~ 153 (364)
.+++ ..||..| |+=.+.-++..+|.+ .|+++.++. + -.--|| .||- .|+ .+.
T Consensus 7 ~~~~~~~WCPGC-G~~~Il~al~~al~e----------------l~~~~~~~v--i-vSGIGC-s~r~--p~y----~~~ 59 (284)
T PRK11869 7 PGSIDIAWCPGC-GNFGIRNSLSKALSE----------------LNLKPRQVA--I-VSGIGQ-AGKM--PHY----INV 59 (284)
T ss_pred CCCCCCCCCCCC-CCHHHHHHHHHHHHH----------------CCCCCCCEE--E-EECCCC-CCCC--CCC----EEE
T ss_conf 789987578999-758999999999998----------------499933189--9-817567-6204--240----870
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCC-------C
Q ss_conf 67667466767432543100112334444331025665-4302456765443211401110221034-3444-------4
Q gi|255764490|r 154 YGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGA-ANQGQVYESFNIAALWNLNVIYVIENNQ-YAMG-------T 224 (364)
Q Consensus 154 ~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~lPvifvvenN~-~ais-------t 224 (364)
.+.+++=|-.+|+|+|+.+| +.+-.++++.|||. .++|.=| +-.|...|..+.++|.||+ |++. |
T Consensus 60 ~~~h~lHGRalp~AtGiK~a----nPdL~Viv~~GDGD~~~IGgnH--~iHA~RRN~dit~Iv~nN~iYGlTkGQ~SPTt 133 (284)
T PRK11869 60 NGFHTLHGRAIPAATAVKAT----NPNLTVIAEGGDGDMYAEGGNH--LIHAIRRNPDITVLIHNNQIYGLTKGQASPTT 133 (284)
T ss_pred CCEECCCCCHHHHHHHHHHH----CCCCEEEEEECCCHHHHHHHHH--HHHHHHCCCCCEEEEECCEECCCCCCCCCCCC
T ss_conf 64311667707889999876----8997699981266154302888--99999748980899988810011579889899
Q ss_pred CCCCCCCC---------CCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf 43232148---------643577777631111-2100002336887542102455454655898315
Q gi|255764490|r 225 SVSRASAQ---------TNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364)
Q Consensus 225 ~~~~~~~~---------~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364)
+....+.. -+....+.+.|...+ +.--.|+....+.+++|+++ +|..|||+..
T Consensus 134 ~~G~~T~t~P~G~~e~p~np~~la~a~GatfVAR~~~~~~~~l~~~ik~Ai~h----kGfs~VeVls 196 (284)
T PRK11869 134 LKGTKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEIIKEAIKH----KGLAIVDIFH 196 (284)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCC----CCCEEEEEEC
T ss_conf 99880557889988899799999997699789987128999999999999679----9817999967
No 120
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=97.84 E-value=1.1e-05 Score=56.58 Aligned_cols=138 Identities=21% Similarity=0.215 Sum_probs=84.9
Q ss_pred CCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH-HHHHHHCCCCCCCCCCCCCCC-CCCHH
Q ss_conf 3254310011233-------44443310256654302456765443211401-110221034344444323214-86435
Q gi|255764490|r 166 LGTGIAFANKYRR-------SDKICVVCFGDGAANQGQVYESFNIAALWNLN-VIYVIENNQYAMGTSVSRASA-QTNFS 236 (364)
Q Consensus 166 ~A~G~A~a~k~~~-------~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lP-vifvvenN~~aist~~~~~~~-~~~i~ 236 (364)
.|+=-|.=.||.. +++-+.||+|||.+.|-+---++++|+..+|. +||||+-|.--...|+--... ...+.
T Consensus 211 ~aIyqArf~kYL~~Rgl~~~~~~kVw~f~GDGEmDEPEs~gai~lA~rE~LDNLifVvNCNLQRLDGPVrGNgkIiqELE 290 (898)
T PRK13012 211 NAIYQARFMRYLQNRGLKDTSGRKVWGFFGDGEMDEPESIGALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELE 290 (898)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf 99999999999985799777777089995587668831123555666613687599995675015887368628999999
Q ss_pred HHHHH-----------------------------------------------------H----------------HHHHH
Q ss_conf 77777-----------------------------------------------------6----------------31111
Q gi|255764490|r 237 KRGVS-----------------------------------------------------F----------------NIPGM 247 (364)
Q Consensus 237 ~ra~~-----------------------------------------------------~----------------gi~~~ 247 (364)
....| | .|..+
T Consensus 291 ~~FrGAGWnVIKviWGs~WD~Ll~~D~~G~L~~~m~e~vDGdyQ~~~a~~Gay~RehFFgk~Pel~~lV~~lSDedI~~L 370 (898)
T PRK13012 291 ALFRGAGWNVIKVLWGSDWDALFARDTTGALARAFAETVDGQFQTFKANDGAYNREHFFGQNPELAALVAHLSDEDIDRL 370 (898)
T ss_pred HHHCCCCCCEEEEEECCCHHHHHHCCCCCHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHH
T ss_conf 87422895379973678667897258857799999861250767630456889999980898899999853899999987
Q ss_pred HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCC---CCCC---CC-CCCCHHHHHHHHH
Q ss_conf 2100002336887542102455454655898315668876---6678---76-6789999999898
Q gi|255764490|r 248 QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGH---SMSD---PA-NYRTREEINEMRS 306 (364)
Q Consensus 248 ~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gH---s~~D---~~-~YR~~~Ei~~~~~ 306 (364)
+--|+|+..||++.+.|++. .+.|++|-++|..-+|- ..+. ++ +--+.++++..|.
T Consensus 371 ~RGGHDp~KvYAAY~~A~~~---kG~PTVILAkTvKGyGlG~~gEg~N~tHQ~KKl~~d~Lk~fRd 433 (898)
T PRK13012 371 KRGGHDPRKVYAAYAAAVRH---KGQPTVILAKTKKGFGMGEAGQGRMTTHQQKKLDVEALKAFRD 433 (898)
T ss_pred HCCCCCHHHHHHHHHHHHHC---CCCCEEEEEEEEEECCCCCHHHHCCHHHCCCCCCHHHHHHHHH
T ss_conf 63699879999999999856---7998489752233256661242021243024599999999999
No 121
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=97.68 E-value=7.6e-06 Score=57.59 Aligned_cols=118 Identities=22% Similarity=0.269 Sum_probs=78.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--CC----CHHHHH
Q ss_conf 677321112212367667466767432543100112334444331025665430245676544321--14----011102
Q gi|255764490|r 141 GGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAAL--WN----LNVIYV 214 (364)
Q Consensus 141 ~gs~H~~~~~~~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~--~~----lPvifv 214 (364)
|-.+|+.-.-.|.+.--|.+|-.+.+|-|+|+ .+.+-++.|++|||...+|..--+ +-+. ++ --++=|
T Consensus 136 Gi~SH~~petPGsIhEGGeLGy~l~ha~gAa~----d~Pdli~~~vvGDGeaetgplats--Whs~kf~np~~dGavLPI 209 (793)
T COG3957 136 GIGSHVAPETPGSIHEGGELGYALSHAYGAAF----DNPDLIVACVVGDGEAETGPLATS--WHSNKFLNPARDGAVLPI 209 (793)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC----CCCCCEEEEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCEEEE
T ss_conf 86444588899764767522488999877501----799857999942663335763000--122234574336732357
Q ss_pred HHCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 2103434444432321-4864357777763111121000023368875421
Q gi|255764490|r 215 IENNQYAMGTSVSRAS-AQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKA 264 (364)
Q Consensus 215 venN~~aist~~~~~~-~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a 264 (364)
..-|||.|+-|+...+ ....+-...+|||..-+.|+|.|+.++++.+...
T Consensus 210 L~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~mAa~ 260 (793)
T COG3957 210 LHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLMAAV 260 (793)
T ss_pred EEECCEECCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 874361015864555167699999985179840585589867763457899
No 122
>TIGR01504 glyox_carbo_lig glyoxylate carboligase; InterPro: IPR006397 This family represents glyoxylate carboligase, also called tartronate-semialdehyde synthase. It releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism. ; GO: 0009028 tartronate-semialdehyde synthase activity, 0009436 glyoxylate catabolic process.
Probab=97.46 E-value=6.1e-05 Score=51.80 Aligned_cols=162 Identities=22% Similarity=0.288 Sum_probs=118.5
Q ss_pred HHHHHHHHHCCCCCCCCCCCCC-------CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2222343210123443455677-------32111221236-766746676743254310011233444433102566543
Q gi|255764490|r 122 ASKIMAELTGRQGGISKGKGGS-------MHMFSTKNGFY-GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAAN 193 (364)
Q Consensus 122 ~~~~~ae~~gk~~g~~~Gr~gs-------~H~~~~~~~~~-~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~ 193 (364)
.++-|..-||++.-+..--|.| .|.+.+...+- +..|++|-.+|-|.|++-+ ..++-+++.-||=-.
T Consensus 374 vyeemnkafG~~~~yv~tiGlsqia~aq~lhvy~~r~WinCGqaGPlGWt~PaalGv~~a----dP~~~~va~sGdydf- 448 (593)
T TIGR01504 374 VYEEMNKAFGRDVTYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTVPAALGVAAA----DPERQVVALSGDYDF- 448 (593)
T ss_pred HHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHC----CCCCCEEEEECCCHH-
T ss_conf 888877640776226653014566665544310366412057768742023455202114----877617898445237-
Q ss_pred CHHHHHHHHHHHHCCCHHHHHHHCCCCC-C---------------------CCC-CCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0245676544321140111022103434-4---------------------444-3232148643577777631111210
Q gi|255764490|r 194 QGQVYESFNIAALWNLNVIYVIENNQYA-M---------------------GTS-VSRASAQTNFSKRGVSFNIPGMQVD 250 (364)
Q Consensus 194 eG~f~Ealn~A~~~~lPvifvvenN~~a-i---------------------st~-~~~~~~~~~i~~ra~~~gi~~~~vD 250 (364)
.-.-|-|..-+-+++|-|.++.||-|= . ..+ .+...-+-+-.+.+++.||..++|
T Consensus 449 -qf~~eelavGaq~~~Py~hv~vnn~ylGlirq~qr~f~~dy~v~l~fenin~~~~~~~~yGvdhv~vae~lGCka~rv- 526 (593)
T TIGR01504 449 -QFLIEELAVGAQHKIPYIHVLVNNAYLGLIRQAQRAFDMDYEVSLAFENINSSGDEVAGYGVDHVKVAEGLGCKAIRV- 526 (593)
T ss_pred -HHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCEEEE-
T ss_conf -888887620320037668999613024455542110010157865100036777533244421312221037206884-
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 00023368875421024554546558983156688766678
Q gi|255764490|r 251 GMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSD 291 (364)
Q Consensus 251 G~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D 291 (364)
.+|.++-.++++|...+.+.+-|+++|+.--|...=|.+.
T Consensus 527 -~~P~~~~~a~~~a~~l~~~~rvPvv~e~ilervtnism~~ 566 (593)
T TIGR01504 527 -TKPEELAAALEQAKKLMAEHRVPVVVEVILERVTNISMGG 566 (593)
T ss_pred -CCHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCC
T ss_conf -0827789999999999984688521032565553101234
No 123
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.45 E-value=0.00016 Score=49.12 Aligned_cols=112 Identities=19% Similarity=0.335 Sum_probs=76.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHCCCHHHHHHHCCCCC-CCCCC--C-------
Q ss_conf 4667674325431001123344443310256654-30245676544321140111022103434-44443--2-------
Q gi|255764490|r 159 IVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAA-NQGQVYESFNIAALWNLNVIYVIENNQYA-MGTSV--S------- 227 (364)
Q Consensus 159 ~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~-~eG~f~Ealn~A~~~~lPvifvvenN~~a-ist~~--~------- 227 (364)
..|+++.+|.|++++. .+..++++||++. ..|. .+|-.|...+.+++++|-||.+. +.... .
T Consensus 429 ~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~~~~ 501 (640)
T COG4231 429 MMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGVAAE 501 (640)
T ss_pred HCCCHHHHCCCCCCCC-----CCCEEEEECCCCCCCCCC--HHHHHHHHCCCCEEEEEEECCCHHCCCCCCCCCCCCCCC
T ss_conf 3443000024542036-----885699953663220481--889999865897599998563021028988998564567
Q ss_pred -CCCCCCCHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf -3214864357777763111121-00002336887542102455454655898315
Q gi|255764490|r 228 -RASAQTNFSKRGVSFNIPGMQV-DGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364)
Q Consensus 228 -~~~~~~~i~~ra~~~gi~~~~v-DG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364)
..+..-.+.+..++.|+..+++ |=.|+.++.+++++|++. .||.+|-++.
T Consensus 502 g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale~----~gpsViiak~ 553 (640)
T COG4231 502 GTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALEV----PGPSVIIAKR 553 (640)
T ss_pred CCCCCEEEHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCC----CCCEEEEECC
T ss_conf 876503576565652484154012873568899999998637----8865999747
No 124
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family; InterPro: IPR011896 A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This entry describes the beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes..
Probab=97.39 E-value=0.00041 Score=46.52 Aligned_cols=118 Identities=22% Similarity=0.362 Sum_probs=76.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCCHHHHHHHCCC-CCCC----CC
Q ss_conf 2367667466767432543100112334444331025665-4302456765443211401110221034-3444----44
Q gi|255764490|r 152 GFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGA-ANQGQVYESFNIAALWNLNVIYVIENNQ-YAMG----TS 225 (364)
Q Consensus 152 ~~~~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa-~~eG~f~Ealn~A~~~~lPvifvvenN~-~ais----t~ 225 (364)
|..+.++.=|=.+|+|+|+=+| |.+=-||+--|||- .++|.=| |--++..|+-|+.++=||+ ||.. .|
T Consensus 47 n~~g~h~LHGRA~P~A~G~KlA----NP~L~Viv~GGDGD~~GIG~~H--fva~gRRN~dIt~l~~DN~VYGLTKGQAsP 120 (302)
T TIGR02177 47 NVNGFHGLHGRALPVATGIKLA----NPKLKVIVVGGDGDLYGIGGNH--FVAAGRRNVDITVLVHDNQVYGLTKGQASP 120 (302)
T ss_pred CCCCCCCCCCCCCHHHHHHHHC----CCCCEEEEEECCCCCHHHHHHH--HHHHHCCCCCCEEEEECCEECCCCCCCCCC
T ss_conf 1366452335631011012010----8984689860686410110577--875411478824884247054666553452
Q ss_pred CC---CCC---CCCCHHH--------HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf 32---321---4864357--------7777631111210000233688754210245545465589831
Q gi|255764490|r 226 VS---RAS---AQTNFSK--------RGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEML 280 (364)
Q Consensus 226 ~~---~~~---~~~~i~~--------ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ 280 (364)
|. .++ +..++.+ .|.||.+=. |-=.-|+...-+-+++|+.+ +|=.||++.
T Consensus 121 Tl~~G~kTk~lp~pni~~~~NP~lLAiA~GytFVA-Rgfs~d~~hLKeiiK~A~~H----~G~AlvDiL 184 (302)
T TIGR02177 121 TLLKGVKTKSLPYPNIQDPVNPLLLAIAAGYTFVA-RGFSGDVAHLKEIIKEAINH----KGYALVDIL 184 (302)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHHCC----CCCEEEEEC
T ss_conf 14687104233578776541389999980852745-88887489999999997328----984587611
No 125
>KOG1184 consensus
Probab=97.37 E-value=0.00014 Score=49.47 Aligned_cols=119 Identities=19% Similarity=0.319 Sum_probs=70.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH-HHHHHHCCCCCCCCCCCC----CC
Q ss_conf 6674667674325431001123344443310256654302456765443211401-110221034344444323----21
Q gi|255764490|r 156 GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLN-VIYVIENNQYAMGTSVSR----AS 230 (364)
Q Consensus 156 ~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lP-vifvvenN~~aist~~~~----~~ 230 (364)
..|.+|-.++-+.|+|.|.. ++.++.|+|||+...- +-| +.....|+|| +||+++|++|-|-.-... ..
T Consensus 413 ~wgsIG~svgatlG~a~a~~----e~rvilfiGDGs~qlT-vQe-iStmir~gl~~~if~~NN~GYTIE~~IH~~~Yn~I 486 (561)
T KOG1184 413 QWGSIGWSVGATLGYAQAAP----EKRVILFIGDGSFQLT-VQE-ISTMIRWGLKPIIFLINNGGYTIEVEIHDGPYNDI 486 (561)
T ss_pred EEEECCCCCHHHHHHHHCCC----CCEEEEEECCCHHEEE-HHH-HHHHHHCCCCCEEEEEECCCEEEEEEECCCCCCCC
T ss_conf 87423765255540223267----7549999638403122-899-99998649971899992797189876247876645
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf 4864357777763111121000023---368875421024554546558983156
Q gi|255764490|r 231 AQTNFSKRGVSFNIPGMQVDGMDIR---AVKATMDKAVAYCRAHKGPIIIEMLTY 282 (364)
Q Consensus 231 ~~~~i~~ra~~~gi~~~~vDG~D~~---~v~~~~~~a~~~~r~~~gP~lie~~ty 282 (364)
...++.....+||-.--++.+..+. +..++++.+.. .+.++|.|||++--
T Consensus 487 ~~W~~~~l~~a~~~~~g~~~~~~v~~~~e~~~~~~~~~~--~~~~~i~liEv~l~ 539 (561)
T KOG1184 487 QNWDYTALLEAFGAGEGKYETHKVRTEEELVEAIKDATF--EKNDKIRLIEVILP 539 (561)
T ss_pred CCCHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHH--CCCCCCEEEEEECC
T ss_conf 331178888761676541687641144689998765642--35677079999438
No 126
>KOG4166 consensus
Probab=97.36 E-value=0.00011 Score=50.24 Aligned_cols=120 Identities=25% Similarity=0.353 Sum_probs=81.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHCCCHHHHHHHCCC-CCCCCC-------
Q ss_conf 766746676743254310011233444433102566543-02456765443211401110221034-344444-------
Q gi|255764490|r 155 GGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAAN-QGQVYESFNIAALWNLNVIYVIENNQ-YAMGTS------- 225 (364)
Q Consensus 155 ~~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~-eG~f~Ealn~A~~~~lPvifvvenN~-~aist~------- 225 (364)
+.-|..|-++|-|.|+..| +.+.+++-.=||++.+ .+. | |..+-..++||-.++-||+ .++-|-
T Consensus 521 GGLGtMGfGLPAAIGAsVA----~P~~iViDIDGDaSF~Mt~~--E-Lat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe 593 (675)
T KOG4166 521 GGLGTMGFGLPAAIGASVA----NPDAIVIDIDGDASFIMTVQ--E-LATIRQENLPVKILILNNEEQGMVTQWQDLFYE 593 (675)
T ss_pred CCCCCCCCCCCHHHCCCCC----CCCCEEEECCCCCEEEEEHH--H-HHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHH
T ss_conf 8743234686065402426----86547996158743565567--6-556653488448999526433168899999888
Q ss_pred ---CCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf ---323214864357777763111121000023368875421024554546558983156688766
Q gi|255764490|r 226 ---VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHS 288 (364)
Q Consensus 226 ---~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs 288 (364)
.....-++++-+.|.+.||++.+|.-. ++..+.+++ ....+||+|+|+.|- ...|.
T Consensus 594 ~rysHThQ~nPnf~klA~AmGikalRV~K~--edL~~k~ke----flsTkGPvLleV~v~-~kehV 652 (675)
T KOG4166 594 ARYSHTHQENPNFLKLAAAMGIKALRVTKK--EDLREKIKE----FLSTKGPVLLEVIVP-HKEHV 652 (675)
T ss_pred HHHCCCCCCCCCHHHHHHHCCCCHHEEEHH--HHHHHHHHH----HHCCCCCEEEEEECC-CCCCE
T ss_conf 641210124962898998649703021028--889999999----747899768999705-75412
No 127
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=97.06 E-value=0.0012 Score=43.40 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=74.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHCCCHHHHHHHCCCC-CCCCCCC---------
Q ss_conf 4667674325431001123344443310256654-3024567654432114011102210343-4444432---------
Q gi|255764490|r 159 IVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAA-NQGQVYESFNIAALWNLNVIYVIENNQY-AMGTSVS--------- 227 (364)
Q Consensus 159 ~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~-~eG~f~Ealn~A~~~~lPvifvvenN~~-aist~~~--------- 227 (364)
..|+.+..+.|.+.+ ..++-+++++|||+. ..|. -++--|..-+.++.++|-+|.. |+.....
T Consensus 404 ~MG~~~~~~~G~~~~----~~~~~v~a~iGDgTffHSG~--~al~~AV~~~~nit~~ILdN~~tAMTGgQ~~pg~~~~~~ 477 (595)
T TIGR03336 404 CMGASIGVASGLSKA----GEKQRIVAFIGDSTFFHTGI--PGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGM 477 (595)
T ss_pred CCCCCHHHHEEECCC----CCCCCEEEEECCCCCHHCCH--HHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 046555653130325----79873799913661010565--999999976998699998688504348999998665446
Q ss_pred -CCCCCCCHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf -32148643577777631111-2100002336887542102455454655898315
Q gi|255764490|r 228 -RASAQTNFSKRGVSFNIPGM-QVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364)
Q Consensus 228 -~~~~~~~i~~ra~~~gi~~~-~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364)
+.+..-++.+..++.|+..+ .||-.|..+..++.+++++. .||.+|..+-
T Consensus 478 g~~~~~i~i~~~~r~~Gv~~v~~v~~~~~~~~~~~~~e~~~~----~GvsViI~~q 529 (595)
T TIGR03336 478 GEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALAA----EGVSVIIAKQ 529 (595)
T ss_pred CCCCCEEEHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHC----CCCEEEEECC
T ss_conf 886432238998876699843687877989999999998618----9978999729
No 128
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=96.80 E-value=0.0015 Score=42.91 Aligned_cols=106 Identities=21% Similarity=0.271 Sum_probs=67.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCC-CCCCC------------------CCCCCCCC
Q ss_conf 100112334444331025665430245676544321140111022103-43444------------------44323214
Q gi|255764490|r 171 AFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENN-QYAMG------------------TSVSRASA 231 (364)
Q Consensus 171 A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN-~~ais------------------t~~~~~~~ 231 (364)
+++.|....++-+++.+|||+.. ..+.-|..+.....-++.++-|| +|+-- +..+.+..
T Consensus 453 ~lG~K~a~pdreV~vmVGDGSym--MlnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~sf~~~~r~~~~e~~~~ 530 (617)
T COG3962 453 GLGAKAAEPDREVYVMVGDGSYM--MLNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGASFNNLLRDTDHEEEIL 530 (617)
T ss_pred CCCCCCCCCCCEEEEEECCCCHH--HHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCC
T ss_conf 01213279997179998266032--2457999999718737999987887513655555407602313565403557877
Q ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf 86435777776311112100002336887542102455454655898315668
Q gi|255764490|r 232 QTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRY 284 (364)
Q Consensus 232 ~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~ 284 (364)
.-+++..|.+||...++|. ++.+... |++.+|+..+++||+++|-.+
T Consensus 531 ~vDfA~~A~s~Ga~~~kv~--~i~eL~a----AL~~Ak~~~~ttvi~I~t~P~ 577 (617)
T COG3962 531 QVDFAAHAESYGAKAYKVG--TIEELEA----ALADAKASDRTTVIVIDTDPK 577 (617)
T ss_pred CCCHHHHHHHCCCEEEECC--CHHHHHH----HHHHHHHCCCCEEEEEECCCC
T ss_conf 6638988865486258628--7899999----999987287877999826874
No 129
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=96.54 E-value=0.0015 Score=42.97 Aligned_cols=153 Identities=24% Similarity=0.322 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHCCCCCEEEECC----CCHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7899999996238998999430----068999997421222234321012-34434556773211122123676674667
Q gi|255764490|r 88 QEAVIVGMKMSLTEGDQMITAY----REHGHILACGVDASKIMAELTGRQ-GGISKGKGGSMHMFSTKNGFYGGHGIVGA 162 (364)
Q Consensus 88 qEa~~vg~~~al~~~D~~~~~y----R~~~~~l~~G~~~~~~~ae~~gk~-~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~ 162 (364)
+-.++..+...|.++|-+|-.- |+.-. +++. .|+- .++ .. |++||=|
T Consensus 375 e~~~a~~l~~~lp~~~~LFvgNSmpVRdvd~---------------~~~~~~~~~--------v~s-NR---GA~GIDG- 426 (566)
T COG1165 375 EAHLAAALADLLPPQDQLFVGNSMPVRDVDA---------------LGQLPAGYR--------VYS-NR---GASGIDG- 426 (566)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCHHHHHHH---------------HCCCCCCCE--------EEC-CC---CCCCCCH-
T ss_conf 6699999997589988279745751422887---------------536766852--------356-78---7545301-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHCC--CH-HHHHHHCCCCCCCC--C-------CCCC
Q ss_conf 6743254310011233444433102566543024567654-432114--01-11022103434444--4-------3232
Q gi|255764490|r 163 QVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFN-IAALWN--LN-VIYVIENNQYAMGT--S-------VSRA 229 (364)
Q Consensus 163 ~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn-~A~~~~--lP-vifvvenN~~aist--~-------~~~~ 229 (364)
-+.-|.|++.+. ...++..+||=+. +|- +| ++...+ .| +|++++|||=+|-. | .++.
T Consensus 427 ~vSTA~Gi~~a~-----~~ptv~liGDLS~----lhD-~NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~fe~~ 496 (566)
T COG1165 427 TVSTALGIARAT-----QKPTVALIGDLSF----LHD-LNGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPVFERL 496 (566)
T ss_pred HHHHHHHHHHHC-----CCCEEEEEECHHH----HHC-CCHHHHCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCHHHH
T ss_conf 677766555521-----7964999700456----521-635765577889759999957986032535677876407776
Q ss_pred CC---CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf 14---86435777776311112100002336887542102455454655898315668
Q gi|255764490|r 230 SA---QTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRY 284 (364)
Q Consensus 230 ~~---~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~ 284 (364)
++ +-+++..+..||+.+.+++.-+ -++++.+.+-...|=.+||++|-|-
T Consensus 497 F~tPh~ldF~~la~~y~l~y~~~~s~~------~l~~~~~~~~~~~g~~viEvkt~r~ 548 (566)
T COG1165 497 FGTPHGLDFAHLAATYGLEYHRPQSWD------ELGEALDQAWRRSGTTVIEVKTDRS 548 (566)
T ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCHH------HHHHHHHHHCCCCCCEEEEEECCHH
T ss_conf 179988888999987385610467499------9999987503578827999953866
No 130
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=95.95 E-value=0.06 Score=32.62 Aligned_cols=159 Identities=17% Similarity=0.238 Sum_probs=86.3
Q ss_pred CCCCCCCCCCCCC-CCHHHHHHHH--HHHHCCCHHHHHHHCCC-CC-------CCCCC---------CCCCCCCCHHHHH
Q ss_conf 4443310256654-3024567654--43211401110221034-34-------44443---------2321486435777
Q gi|255764490|r 180 DKICVVCFGDGAA-NQGQVYESFN--IAALWNLNVIYVIENNQ-YA-------MGTSV---------SRASAQTNFSKRG 239 (364)
Q Consensus 180 ~~v~v~~~GDGa~-~eG~f~Ealn--~A~~~~lPvifvvenN~-~a-------ist~~---------~~~~~~~~i~~ra 239 (364)
+.-++.+-|||-+ .-|- -+|. +|+ +-.|.++|-||+ |+ -+||. .+....+++...+
T Consensus 151 kkSvWivGGDGWAYDIG~--gGLdHVLAs--G~nVNvLVlDtE~YsNTGgQ~SkaTp~ga~akfa~~Gk~~~KKDl~~ia 226 (365)
T cd03377 151 KKSVWIIGGDGWAYDIGY--GGLDHVLAS--GENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIA 226 (365)
T ss_pred CCCEEEECCCCHHHHCCC--CHHHHHHHC--CCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHH
T ss_conf 553588746612320363--115677745--8972899965865557775335688640443104357654413299999
Q ss_pred HHHHHHHH-HH-HCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC-CC------------CC----CCCCHHH
Q ss_conf 77631111-21-0000233688754210245545465589831566887666-78------------76----6789999
Q gi|255764490|r 240 VSFNIPGM-QV-DGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSM-SD------------PA----NYRTREE 300 (364)
Q Consensus 240 ~~~gi~~~-~v-DG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~-~D------------~~----~YR~~~E 300 (364)
-+||.+++ +| =|.|+..+.+++++|.++ .||.||.+.+.+. .|.. .| .. .||-.-+
T Consensus 227 m~~g~vYVA~va~ga~~~q~lka~~eA~~~----~GPs~i~aysPC~-~hg~~~~~~~~~~~~k~AV~sGyWpLyrynP~ 301 (365)
T cd03377 227 MSYGNVYVAQIALGANDNQTLKAFREAEAY----DGPSLIIAYSPCI-AHGIKGGMTKSQEQQKLAVESGYWPLYRYNPR 301 (365)
T ss_pred HHCCCCEEEEEECCCCHHHHHHHHHHHHCC----CCCEEEEEECCCC-CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 976996699961689999999999998678----9986998877874-13778775568999999998597057624715
Q ss_pred HHHHHHHCCH--------HHHHHHHHHHCCCC------CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998983893--------79999999987899------9899999999999999999999984
Q gi|255764490|r 301 INEMRSNHDP--------IEQVRKRLLHNKWA------SEGDLKEIEMNVRKIINNSVEFAQS 349 (364)
Q Consensus 301 i~~~~~~~DP--------I~~~~~~L~~~g~~------te~e~~~i~~~~~~~v~~a~~~A~~ 349 (364)
+.. ..+.| -.-++++|...+.+ ..+..+++-++.+++|++-++.-+.
T Consensus 302 l~~--~gk~pf~LDsk~p~~~~~~fl~~e~Rf~~L~k~~Pe~A~~L~~~~~~~v~~r~~~~~~ 362 (365)
T cd03377 302 LVE--EGKNPLQLDSKEPDGPVEEFLNNENRFAALKKANPERAEQLFEQLQADAKERYKRYKR 362 (365)
T ss_pred HHH--CCCCCCEECCCCCCCCHHHHHHHCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 665--7999833068899966999986246799984518399999999999999999999999
No 131
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=94.47 E-value=0.018 Score=35.92 Aligned_cols=103 Identities=20% Similarity=0.251 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 32543100112334444331025665430245676544321140111022103434444432321486435777776311
Q gi|255764490|r 166 LGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIP 245 (364)
Q Consensus 166 ~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~ 245 (364)
.|.|+|... ...++++..|=|.++ ..-++--|..-+.|+|++.-............| ..+.....+. +.
T Consensus 50 mAdgyar~~----g~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~d~~~~~~~--~t 118 (154)
T cd06586 50 AAAGYARAG----GPPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGISAQAKQTFQ--SMFDLGMYRS--IP 118 (154)
T ss_pred HHHHHHHHH----CCCEEEECCCCHHHH---HHHHHHHHHHCCCCEEEEECCCCHHHCCCCCCC--CHHHHHHHHH--HH
T ss_conf 999999974----994899637957998---999999998756988999668887662789883--1139999999--98
Q ss_pred HHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf 1121000023368875421024554546558983
Q gi|255764490|r 246 GMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEM 279 (364)
Q Consensus 246 ~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~ 279 (364)
-+...=.++.++.+.+++|+..++.+.||++|++
T Consensus 119 k~~~~v~~~~~~~~~l~~A~~~a~~~pGPv~l~i 152 (154)
T cd06586 119 EANISSPSPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred HEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 6489949999999999999999854998789862
No 132
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=93.95 E-value=0.041 Score=33.70 Aligned_cols=103 Identities=12% Similarity=0.061 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 25431001123344443310256654302456765443211401110221034344444323214864357777763111
Q gi|255764490|r 167 GTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPG 246 (364)
Q Consensus 167 A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~ 246 (364)
|-|+|+. .++-.++++..|=|.++ ..-++.-|-.-+.|+|++.-+-..........| ..+.....+.+--..
T Consensus 54 A~gyar~---tg~~gv~~~t~GpG~tN---~~~gl~~A~~~~~Pll~i~g~~~~~~~~~~~~Q--~~d~~~~~~~~tK~~ 125 (164)
T cd07039 54 ASAEAKL---TGKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQVPTDELGTDYFQ--EVDLLALFKDVAVYN 125 (164)
T ss_pred HHHHHHH---HCCCEEEEEECCCHHHH---HHHHHHHHHHCCCCEEEEECCCCHHHCCCCCCC--CCCHHHHHHHHHCEE
T ss_conf 9999999---79987999842823888---999999999858977999667755434899874--274999989974578
Q ss_pred HHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf 121000023368875421024554546558983
Q gi|255764490|r 247 MQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEM 279 (364)
Q Consensus 247 ~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~ 279 (364)
.+| .++..+-+.+++|+..++.++||+.|++
T Consensus 126 ~~v--~~~~~~~~~~~~A~~~A~~~~GPV~l~i 156 (164)
T cd07039 126 ETV--TSPEQLPELLDRAIRTAIAKRGVAVLIL 156 (164)
T ss_pred EEC--CCHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 885--9999999999999998540899999992
No 133
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=92.13 E-value=0.073 Score=32.08 Aligned_cols=95 Identities=14% Similarity=0.178 Sum_probs=52.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCC---CCCCCCCCCCCCCHH---HHHHHHHHHHHHHHCCH
Q ss_conf 444331025665430245676544321140111022103434---444432321486435---77777631111210000
Q gi|255764490|r 180 DKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYA---MGTSVSRASAQTNFS---KRGVSFNIPGMQVDGMD 253 (364)
Q Consensus 180 ~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~a---ist~~~~~~~~~~i~---~ra~~~gi~~~~vDG~D 253 (364)
-.++++..|=|+++ ..-++--|-.-+.|+|++.-...-. ...-...+....++. +..+.+--...+| .|
T Consensus 60 ~gv~~~t~GPG~tN---~~tgl~~A~~d~~Pvl~isG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~~~~v--~~ 134 (162)
T cd07038 60 LGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARL--TD 134 (162)
T ss_pred CEEEEECCCCCHHH---HHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHEEEEEEE--CC
T ss_conf 65666557871888---99999999983898799968877556525763001126521699999998673288992--99
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf 23368875421024554546558983
Q gi|255764490|r 254 IRAVKATMDKAVAYCRAHKGPIIIEM 279 (364)
Q Consensus 254 ~~~v~~~~~~a~~~~r~~~gP~lie~ 279 (364)
+..+-+.+++|+..++.++||++|++
T Consensus 135 ~~~~~~~l~~A~~~A~~~~gPV~l~i 160 (162)
T cd07038 135 PENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 99999999999999842898889963
No 134
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=91.52 E-value=0.1 Score=31.21 Aligned_cols=12 Identities=8% Similarity=0.077 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999984
Q gi|255764490|r 338 KIINNSVEFAQS 349 (364)
Q Consensus 338 ~~v~~a~~~A~~ 349 (364)
+++..|+++|.+
T Consensus 536 ~el~~al~~Al~ 547 (589)
T PRK07525 536 EELGPALKRAID 547 (589)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999997
No 135
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=91.28 E-value=0.11 Score=31.06 Aligned_cols=164 Identities=16% Similarity=0.088 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98789999999623899899943006899999742122223432101234434556773211122123676674667674
Q gi|255764490|r 86 IGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVS 165 (364)
Q Consensus 86 ~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p 165 (364)
.|.||++-|+..+- -|+++.|- ++|.--+.|.+.+-- ..|+.. . .++.+-+=+ +.+.
T Consensus 11 ~GNeAvA~ga~~Ag--~~v~a~YP----------ITPsT~I~e~la~~~--~~G~~~-~-------~~vq~EsE~-aAi~ 67 (394)
T PRK08366 11 SGNYAAAYAALHAR--VQVVAAYP----------ITPQTSIIEKIAEFI--ANGEAD-I-------QYIPVESEH-SAMA 67 (394)
T ss_pred EHHHHHHHHHHHHC--CCEEEEEC----------CCCHHHHHHHHHHHH--HCCCCC-E-------EEEEECCHH-HHHH
T ss_conf 87999999999969--98899979----------887428999999997--579966-0-------798627789-9999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCH-HHHHHHH
Q ss_conf 3254310011233444433102566543024--567654432114011102210343444443232148643-5777776
Q gi|255764490|r 166 LGTGIAFANKYRRSDKICVVCFGDGAANQGQ--VYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNF-SKRGVSF 242 (364)
Q Consensus 166 ~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~--f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i-~~ra~~~ 242 (364)
.+.|++++ | ..+.+ +++++|- .+|.|-+|+-..+|+|+++-+- +++++...+.-..++ +.|- .
T Consensus 68 a~iGAs~a----G--ara~T----aTSgpGl~LM~E~l~~aag~elP~Vi~~v~R--~~~~~~~i~~dh~D~m~~rd--~ 133 (394)
T PRK08366 68 ACIGASAT----G--ARAFT----ATSAQGLALMHEMLHWAAGARLPIVMVDVNR--AMAPPWSVWDDQTDSLSQRD--T 133 (394)
T ss_pred HHHHHHHH----C--CCEEE----ECCCCCHHHHHHHHHHHHHCCCCEEEEEEEC--CCCCCCCCCCCHHHHHHCCC--C
T ss_conf 99999851----8--77687----4077348877458899987449879999653--78998887610454643577--7
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 31111210000233688754210245545465589831566887666
Q gi|255764490|r 243 NIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSM 289 (364)
Q Consensus 243 gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~ 289 (364)
| ...+-..++.+++..+..|.+.+-+-+-|+++-..-|+. +|+.
T Consensus 134 g--~~~l~~~~~QE~~d~~i~Af~iAe~~~~Pviv~~Dgf~~-sh~~ 177 (394)
T PRK08366 134 G--WMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFIL-SHTY 177 (394)
T ss_pred C--EEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HCCE
T ss_conf 7--178836987889999999999999987998996053353-1853
No 136
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=90.95 E-value=0.1 Score=31.11 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=12.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCHHH
Q ss_conf 025665430245676544321140111
Q gi|255764490|r 186 CFGDGAANQGQVYESFNIAALWNLNVI 212 (364)
Q Consensus 186 ~~GDGa~~eG~f~Ealn~A~~~~lPvi 212 (364)
+.|.|+...+..-+-..||..+++||+
T Consensus 222 i~G~G~~~~~a~~~l~~lae~l~iPV~ 248 (572)
T PRK09259 222 ILGKGAAYAQADEQIREFVESTGIPFL 248 (572)
T ss_pred EECCCCCHHHHHHHHHHHHHHHCCCEE
T ss_conf 988781455489999999997399767
No 137
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=90.89 E-value=0.1 Score=31.13 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=9.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCHH
Q ss_conf 566543024567654432114011
Q gi|255764490|r 188 GDGAANQGQVYESFNIAALWNLNV 211 (364)
Q Consensus 188 GDGa~~eG~f~Ealn~A~~~~lPv 211 (364)
|.|....+..-|...+|..+++||
T Consensus 204 G~gv~~~~a~~~l~~Lae~lg~PV 227 (579)
T TIGR03457 204 GGGVVMGDAVEECKALAERLGAPV 227 (579)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 974244326999999999739770
No 138
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=90.87 E-value=0.078 Score=31.91 Aligned_cols=110 Identities=12% Similarity=0.104 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 67432543100112334-44433102566543024567654432114011102210343444443232148643577777
Q gi|255764490|r 163 QVSLGTGIAFANKYRRS-DKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVS 241 (364)
Q Consensus 163 ~~p~A~G~A~a~k~~~~-~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~ 241 (364)
+=..|+++|.+..+... -.++++..|=|.++ ...++--|..-++|+|++.-+....--.... ....+.....+.
T Consensus 42 ~E~~A~~~A~g~~~~tg~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~--~q~~d~~~~~~~ 116 (155)
T cd07035 42 HEQGAVGMADGYARATGKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRPTAGEGRGA--FQEIDQVALFRP 116 (155)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH---HHHHHHHHHHCCCCEEEEECCCCHHHHCCCC--CCCCCHHHHCCC
T ss_conf 77999999999998659975999827768887---8899999998389808994688867727556--545364765277
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHCCCCCCC-CCCEEEEE
Q ss_conf 631111210000233688754210245545-46558983
Q gi|255764490|r 242 FNIPGMQVDGMDIRAVKATMDKAVAYCRAH-KGPIIIEM 279 (364)
Q Consensus 242 ~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~-~gP~lie~ 279 (364)
+--..++|+ ++.++...+.+|++.++.+ .||+.|++
T Consensus 117 ~~k~~~~i~--~~~~~~~~i~~A~~~a~s~~~gPv~l~i 153 (155)
T cd07035 117 ITKWAYRVT--SPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred CCCEEEECC--CHHHHHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf 663257889--9999999999999997459894589980
No 139
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type; InterPro: IPR012846 Two groups of proteins form acetolactate from two molecules of pyruvate. The type of acetolactate synthase described in this entry also catalyzes the formation of acetohydroxybutyrate from pyruvate and 2-oxobutyrate, an early step in the branched chain amino acid biosynthesis; it is therefore also termed acetohydroxyacid synthase. In bacteria, this catalytic chain is associated with a smaller regulatory chain in an alpha2/beta2 heterotetramer. Acetolactate synthase is a thiamine pyrophosphate enzyme. In this type, FAD and Mg++ are also found. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding, 0009082 branched chain family amino acid biosynthetic process.
Probab=90.42 E-value=0.33 Score=27.90 Aligned_cols=97 Identities=16% Similarity=0.269 Sum_probs=52.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH--
Q ss_conf 254310011233444433102566543024567654432114011102210343444443232148643577777631--
Q gi|255764490|r 167 GTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNI-- 244 (364)
Q Consensus 167 A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi-- 244 (364)
|=|+|+|+ |+-+||++.-|=||||- =-.+--|=.-.+|+|.+ +-=+....=+.|=.+=+.-+||
T Consensus 58 ADGYARAs---GkvGVv~~TSGPGATN~---VTGiAtAy~DS~P~Vv~--------tGQV~t~~IG~DAFQE~D~~GIt~ 123 (593)
T TIGR00118 58 ADGYARAS---GKVGVVLATSGPGATNL---VTGIATAYMDSVPLVVF--------TGQVPTSLIGSDAFQEADILGITM 123 (593)
T ss_pred HCCCEECC---CCEEEEEEECCCCCHHH---HHHHHHHHHCCCCEEEE--------CCCHHHHHCCCCCCHHHHHCCCCC
T ss_conf 23440015---83028986079872335---65677754257653775--------176000101375000001113466
Q ss_pred H----HHHHHCCHHHHHHHHHHHHCCCCCCCC-CCEEEEE
Q ss_conf 1----112100002336887542102455454-6558983
Q gi|255764490|r 245 P----GMQVDGMDIRAVKATMDKAVAYCRAHK-GPIIIEM 279 (364)
Q Consensus 245 ~----~~~vDG~D~~~v~~~~~~a~~~~r~~~-gP~lie~ 279 (364)
| ++.| .++.++-..+++|+..|-.|+ |||||.+
T Consensus 124 PitKHsf~V--~~~edlp~~~~~AF~IA~TGRPGPVlvDl 161 (593)
T TIGR00118 124 PITKHSFQV--KSAEDLPRIIKEAFHIATTGRPGPVLVDL 161 (593)
T ss_pred CEEEEEECC--CCHHHHHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf 656753002--58789999999877643276668827858
No 140
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=90.05 E-value=0.23 Score=28.93 Aligned_cols=113 Identities=15% Similarity=0.153 Sum_probs=71.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHH-HHHHH
Q ss_conf 43254310011233444433102566543024--5676544321140111022103434444432321486435-77777
Q gi|255764490|r 165 SLGTGIAFANKYRRSDKICVVCFGDGAANQGQ--VYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFS-KRGVS 241 (364)
Q Consensus 165 p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~--f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~-~ra~~ 241 (364)
..+.|++++ |... ++ +++++|. .+|.+.+|+.-.+|++++.-+-+ +.||.....+...++- .+..+
T Consensus 62 ~~~~GAs~a----GaRa--~t----aTSg~Gl~lm~E~l~~a~~~e~P~Vi~~~~R~-gpstglpt~~~q~D~~~~~~~~ 130 (377)
T PRK08659 62 AAIIGASWA----GAKA--MT----ATSGPGFSLMQENIGYAAMTETPCVIVNVQRG-GPSTGQPTKPAQGDMMQARWGT 130 (377)
T ss_pred HHHHHHHHH----CCCE--EE----EECCCCHHHHHHHHHHHHHCCCCEEEEEEECC-CCCCCCCCCCCCHHHHHHHCCC
T ss_conf 999999873----8866--88----64575188888877787642787799996347-7888887764626578640467
Q ss_pred H-HHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 6-311112100002336887542102455454655898315668876667
Q gi|255764490|r 242 F-NIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMS 290 (364)
Q Consensus 242 ~-gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~ 290 (364)
. ..+-+.+.-.|+.++++.+..|.+.+-+-+-|+++-..+ + -+|+..
T Consensus 131 hGd~~~ivl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~Dg-~-lsh~~e 178 (377)
T PRK08659 131 HGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADE-V-VGHMRE 178 (377)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCC-C-CCCCCC
T ss_conf 77777399926987999999999999999768898997166-1-024111
No 141
>PRK07064 hypothetical protein; Provisional
Probab=89.80 E-value=0.15 Score=29.99 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999998479878
Q gi|255764490|r 335 NVRKIINNSVEFAQSDKEPD 354 (364)
Q Consensus 335 ~~~~~v~~a~~~A~~~p~P~ 354 (364)
+..+++++++++|.+++.|.
T Consensus 502 ~~~~eL~~al~~A~~~~gP~ 521 (544)
T PRK07064 502 TSADDFEAVLREALAKEGPV 521 (544)
T ss_pred CCHHHHHHHHHHHHHCCCCE
T ss_conf 99999999999998289958
No 142
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=89.69 E-value=0.1 Score=31.08 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999847987
Q gi|255764490|r 336 VRKIINNSVEFAQSDKEP 353 (364)
Q Consensus 336 ~~~~v~~a~~~A~~~p~P 353 (364)
..+++++++++|.++..|
T Consensus 513 ~~~eL~~al~~Al~~~~p 530 (554)
T TIGR03254 513 TPDELKAALNEALASGKP 530 (554)
T ss_pred CHHHHHHHHHHHHHCCCE
T ss_conf 999999999999827990
No 143
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=89.44 E-value=0.21 Score=29.18 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=17.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHH
Q ss_conf 3310256654302456765443211401110
Q gi|255764490|r 183 CVVCFGDGAANQGQVYESFNIAALWNLNVIY 213 (364)
Q Consensus 183 ~v~~~GDGa~~eG~f~Ealn~A~~~~lPvif 213 (364)
.+.+.|.|....+..-|-..||-.+++|++.
T Consensus 213 Pvii~G~g~~~~~a~~~l~~lae~l~iPv~t 243 (566)
T PRK07282 213 PVILAGGGINYAEAAKELVEFAERYQIPVVT 243 (566)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 5899888837245999999999986998995
No 144
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=89.35 E-value=0.13 Score=30.45 Aligned_cols=113 Identities=16% Similarity=0.188 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCC-CCCH-HH
Q ss_conf 67674325431001123344443310256654302-456765443211401110221034344444323214-8643-57
Q gi|255764490|r 161 GAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQG-QVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASA-QTNF-SK 237 (364)
Q Consensus 161 g~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG-~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~-~~~i-~~ 237 (364)
|..+.+|+|+-+|. +.+.++++-..+...- -=.-||.---++++|++++|-+-|+. .+..+.|.. .-.+ -+
T Consensus 36 G~AV~iaaG~~Lat-----gk~p~VymQNSGLGNavNPL~SL~~~~vY~IP~llligWRG~p-g~kDEPQH~~qG~iT~~ 109 (361)
T TIGR03297 36 GAAVGLAAGAYLAT-----GKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEP-GVHDEPQHVKQGRITLS 109 (361)
T ss_pred HHHHHHHHHHHHHC-----CCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCC-CCCCCCCHHHCCCHHHH
T ss_conf 66999999999756-----9974799953772044515977176664055617998724789-99886540440420299
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf 7777631111210000233688754210245545465589831
Q gi|255764490|r 238 RGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEML 280 (364)
Q Consensus 238 ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ 280 (364)
..+.+|||+..++.+ -.+..+.+.++++++.+.++|+.+-+.
T Consensus 110 lL~~~~Ipy~il~~~-~~~~~~~i~~ai~~~~~~~~P~allv~ 151 (361)
T TIGR03297 110 LLDALEIPWEVLSTD-NDEALAQIERALAHALATSRPYALVVR 151 (361)
T ss_pred HHHHCCCCEEECCCC-HHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 999769987990865-678999999999999997997899983
No 145
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=89.29 E-value=0.23 Score=28.91 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=43.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 345567732111221236766--------746676743254---310011233444433102566543024567654432
Q gi|255764490|r 137 SKGKGGSMHMFSTKNGFYGGH--------GIVGAQVSLGTG---IAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAA 205 (364)
Q Consensus 137 ~~Gr~gs~H~~~~~~~~~~~~--------~~vg~~~p~A~G---~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~ 205 (364)
..||-|+.|+.-|.. +.... ......-|...+ +..+.++.++-.-.+.+.|=|+...+..-|...||-
T Consensus 147 ~sgrpGpv~i~iP~D-v~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~aa~~L~~AkrPvIl~G~G~~~a~a~~~l~~lae 225 (550)
T COG0028 147 LSGRPGPVVVDLPKD-VLAAEAEEPGPEPAILPPYRPAPPPPEAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAE 225 (550)
T ss_pred HCCCCCEEEEECCHH-HHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHH
T ss_conf 528996299972854-7646155655544455676889884899999999997389978998886564134999999999
Q ss_pred HCCCHHHHHHHCCC
Q ss_conf 11401110221034
Q gi|255764490|r 206 LWNLNVIYVIENNQ 219 (364)
Q Consensus 206 ~~~lPvifvvenN~ 219 (364)
..++||+.-....+
T Consensus 226 ~~~~Pv~~t~~gkg 239 (550)
T COG0028 226 KLGAPVVTTLMGKG 239 (550)
T ss_pred HHCCCEEECCCCCC
T ss_conf 87989897245576
No 146
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=88.74 E-value=0.28 Score=28.35 Aligned_cols=26 Identities=12% Similarity=0.059 Sum_probs=11.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCHHH
Q ss_conf 25665430245676544321140111
Q gi|255764490|r 187 FGDGAANQGQVYESFNIAALWNLNVI 212 (364)
Q Consensus 187 ~GDGa~~eG~f~Ealn~A~~~~lPvi 212 (364)
.|-|....+..-|-..+|-.+++||+
T Consensus 227 ~G~G~~~~~a~~~l~~lae~lg~PV~ 252 (568)
T PRK08327 227 TQRGGRRAEAFASLDRLAEELGIPVV 252 (568)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 17873357899999999875499679
No 147
>PRK08322 acetolactate synthase; Reviewed
Probab=88.42 E-value=0.21 Score=29.10 Aligned_cols=30 Identities=10% Similarity=0.101 Sum_probs=20.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCHHH
Q ss_conf 331025665430245676544321140111
Q gi|255764490|r 183 CVVCFGDGAANQGQVYESFNIAALWNLNVI 212 (364)
Q Consensus 183 ~v~~~GDGa~~eG~f~Ealn~A~~~~lPvi 212 (364)
.+.+.|.|+...+..-|-..||-.+++|++
T Consensus 199 PvIi~G~g~~~~~a~~~l~~lae~l~~PV~ 228 (547)
T PRK08322 199 PLILIGAGANRKTASKALTEFVDKTGIPFF 228 (547)
T ss_pred CEEECCCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 789868885734099999999998299789
No 148
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=88.39 E-value=0.24 Score=28.81 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHCCCC
Q ss_conf 9999999999847987
Q gi|255764490|r 338 KIINNSVEFAQSDKEP 353 (364)
Q Consensus 338 ~~v~~a~~~A~~~p~P 353 (364)
+++++++++|.++.-|
T Consensus 522 ~el~~al~~a~~~~gP 537 (572)
T PRK06456 522 EEIEKSIKTAIKENIP 537 (572)
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 9999999999828996
No 149
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=88.25 E-value=0.37 Score=27.54 Aligned_cols=115 Identities=11% Similarity=0.184 Sum_probs=71.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHH-HHHHHH
Q ss_conf 7432543100112334444331025665430245676544321140111022103434444432321486435-777776
Q gi|255764490|r 164 VSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFS-KRGVSF 242 (364)
Q Consensus 164 ~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~-~ra~~~ 242 (364)
+..|+|++++- ....+ +.-|=|= -..+|+|.+|+-..+|++++.-+-. +.||-....+...++. .+..++
T Consensus 60 ~~~aiGAs~aG----aRa~T-aTSg~Gl---~lm~E~l~~a~~~e~P~Vi~~~~R~-gPstGlpt~~~q~Dl~~~~~~~h 130 (375)
T PRK09627 60 ISVALGASMSG----VKSMT-ASSGPGI---SLKAEQIGLGFMAEIPLVIVNVMRG-GPSTGLPTRVAQGDVNQAKNPTH 130 (375)
T ss_pred HHHHHHHHHHC----CCEEE-ECCCCCH---HHHHHHHHHHHHCCCCEEEEEEECC-CCCCCCCCCCCCCCHHHHHCCCC
T ss_conf 99999999749----82576-2277548---8888898899863798699998758-88768866324340888633778
Q ss_pred H-HHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 3-1111210000233688754210245545465589831566887666
Q gi|255764490|r 243 N-IPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSM 289 (364)
Q Consensus 243 g-i~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~ 289 (364)
| .+-+.+--.|+.+++..+..|.+.+-.-+-|++|-..+ ++ +|+.
T Consensus 131 Gd~~~ivl~p~s~qEa~d~t~~Af~lAE~~~~PVivl~D~-~l-sh~~ 176 (375)
T PRK09627 131 GDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE-TV-GHMY 176 (375)
T ss_pred CCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC-HH-HCCC
T ss_conf 7634067746789999999999999999868988997133-10-0221
No 150
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=88.12 E-value=0.24 Score=28.71 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999999847987
Q gi|255764490|r 335 NVRKIINNSVEFAQSDKEP 353 (364)
Q Consensus 335 ~~~~~v~~a~~~A~~~p~P 353 (364)
+..+++++|+++|.+++-|
T Consensus 517 ~~~~el~~Al~~A~~~~gP 535 (586)
T PRK06276 517 EKPGEINEALKTAINSGEP 535 (586)
T ss_pred CCHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999808997
No 151
>PRK07524 hypothetical protein; Provisional
Probab=88.04 E-value=0.18 Score=29.63 Aligned_cols=20 Identities=10% Similarity=0.072 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999998479878
Q gi|255764490|r 335 NVRKIINNSVEFAQSDKEPD 354 (364)
Q Consensus 335 ~~~~~v~~a~~~A~~~p~P~ 354 (364)
+..+++++++++|.+++-|.
T Consensus 503 ~~~~el~~al~~al~~~gp~ 522 (534)
T PRK07524 503 ADLDQLQAALRAAFARPGPT 522 (534)
T ss_pred CCHHHHHHHHHHHHCCCCCE
T ss_conf 99999999999998089958
No 152
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=87.76 E-value=0.29 Score=28.22 Aligned_cols=13 Identities=15% Similarity=0.072 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999984
Q gi|255764490|r 337 RKIINNSVEFAQS 349 (364)
Q Consensus 337 ~~~v~~a~~~A~~ 349 (364)
.+++++++++|.+
T Consensus 521 ~~eL~~al~~Al~ 533 (574)
T PRK06882 521 PDELEEKLTQAFS 533 (574)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999985
No 153
>PRK08611 pyruvate oxidase; Provisional
Probab=87.71 E-value=0.19 Score=29.40 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999998479878
Q gi|255764490|r 335 NVRKIINNSVEFAQSDKEPD 354 (364)
Q Consensus 335 ~~~~~v~~a~~~A~~~p~P~ 354 (364)
+..+++++|++.|.+++.|.
T Consensus 504 ~~~~el~~Al~~Al~~~~P~ 523 (576)
T PRK08611 504 KSADELDPAFEEALAQDKPV 523 (576)
T ss_pred CCHHHHHHHHHHHHHCCCCE
T ss_conf 99999999999998289979
No 154
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=87.11 E-value=0.34 Score=27.77 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHCCCC
Q ss_conf 99999999999847987
Q gi|255764490|r 337 RKIINNSVEFAQSDKEP 353 (364)
Q Consensus 337 ~~~v~~a~~~A~~~p~P 353 (364)
.+++++|++.|.+++.|
T Consensus 524 ~~el~~Al~~Al~~~gP 540 (571)
T PRK07710 524 PLEAKEQLQHAITLQEP 540 (571)
T ss_pred HHHHHHHHHHHHCCCCC
T ss_conf 99999999999818996
No 155
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.92 E-value=0.29 Score=28.20 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=13.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCHHH
Q ss_conf 31025665430245676544321140111
Q gi|255764490|r 184 VVCFGDGAANQGQVYESFNIAALWNLNVI 212 (364)
Q Consensus 184 v~~~GDGa~~eG~f~Ealn~A~~~~lPvi 212 (364)
+.+.|.|....|..-|...+|-.+++||+
T Consensus 218 vil~G~Gv~~~~a~~~l~~lae~~~~PV~ 246 (570)
T PRK06725 218 LLYIGGGVIHSGGSDELIKFARENRIPVV 246 (570)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 79836760046489999999998699899
No 156
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=86.55 E-value=0.31 Score=28.04 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHCCCCC
Q ss_conf 999999999998479878
Q gi|255764490|r 337 RKIINNSVEFAQSDKEPD 354 (364)
Q Consensus 337 ~~~v~~a~~~A~~~p~P~ 354 (364)
.++++++++.|.+++.|.
T Consensus 514 ~~el~~al~~al~~~gP~ 531 (562)
T PRK06048 514 PSEVRPAIEEAVESGRPV 531 (562)
T ss_pred HHHHHHHHHHHHHCCCCE
T ss_conf 999999999998189979
No 157
>PRK12474 hypothetical protein; Provisional
Probab=86.47 E-value=0.38 Score=27.49 Aligned_cols=20 Identities=10% Similarity=0.112 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHCCCCCH
Q ss_conf 99999999999984798788
Q gi|255764490|r 336 VRKIINNSVEFAQSDKEPDP 355 (364)
Q Consensus 336 ~~~~v~~a~~~A~~~p~P~~ 355 (364)
..+++++++++|.+++-|..
T Consensus 494 ~~~el~~al~~Al~~~gP~l 513 (518)
T PRK12474 494 TAEEFSAQYAAAMAQRGPRL 513 (518)
T ss_pred CHHHHHHHHHHHHCCCCCEE
T ss_conf 99999999999973999779
No 158
>PRK11269 glyoxylate carboligase; Provisional
Probab=85.84 E-value=0.51 Score=26.64 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=20.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCHHH
Q ss_conf 331025665430245676544321140111
Q gi|255764490|r 183 CVVCFGDGAANQGQVYESFNIAALWNLNVI 212 (364)
Q Consensus 183 ~v~~~GDGa~~eG~f~Ealn~A~~~~lPvi 212 (364)
.+.+.|.|+...+..-|-..||-..++||+
T Consensus 206 PvIi~G~G~~~~~a~~~l~~lae~l~iPV~ 235 (591)
T PRK11269 206 PLIVAGGGVINADASDLLVEFAELTGVPVI 235 (591)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 879958880311159999999985399789
No 159
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=85.57 E-value=0.69 Score=25.81 Aligned_cols=162 Identities=17% Similarity=0.171 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 987899999996238998999430068999997421222234321012--344345567732111221236766746676
Q gi|255764490|r 86 IGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQ--GGISKGKGGSMHMFSTKNGFYGGHGIVGAQ 163 (364)
Q Consensus 86 ~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk~--~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~ 163 (364)
.|.||++-|+-.+ .-|+++.|- ++|.--+.|.+.+. .|-.+|. |+.+-+=+ +.
T Consensus 8 ~GNeAvA~aa~~A--g~~v~a~YP----------ITPsTeI~E~la~~~a~g~~~~~------------~iq~EsE~-aA 62 (395)
T PRK08367 8 KANEAAAWAAKLA--KPKVIAAFP----------ITPSTLVPEKISEFVANGELDAE------------FIKVESEH-SA 62 (395)
T ss_pred EHHHHHHHHHHHH--CCCEEEEEC----------CCCCCHHHHHHHHHHHCCCCCCE------------EEEECCHH-HH
T ss_conf 2689999999985--998999969----------88844899999998547885877------------99858789-99
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCC-HHHHHH
Q ss_conf 743254310011233444433102566543024--56765443211401110221034344444323214864-357777
Q gi|255764490|r 164 VSLGTGIAFANKYRRSDKICVVCFGDGAANQGQ--VYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTN-FSKRGV 240 (364)
Q Consensus 164 ~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~--f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~-i~~ra~ 240 (364)
+..+.|++++ |.. +.+ +++++|- .+|.|-.|+-..+|+|+++.|- ++++|..-+....+ ++.|-
T Consensus 63 i~a~~GAs~a----Gar--a~T----aTSg~Gl~LM~E~l~~aag~elPiVi~v~~R--~~~~p~~i~~d~~D~~~~rd- 129 (395)
T PRK08367 63 ISACVGASAA----GVR--TFT----ATASQGLALMHEILFIAAGMRLPIVMAIGNR--ALSAPINIWNDWQDTISQRD- 129 (395)
T ss_pred HHHHHHHHHH----CCC--EEE----ECCCCCHHHHHHHHHHHHHHHCCEEEEECCC--CCCCCCCCCCHHHHHHHCCC-
T ss_conf 9999988852----978--685----1478738887438999987117789997045--78888776511566875678-
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCC--CEEEEECCCCCCCCCC
Q ss_conf 763111121000023368875421024554546--5589831566887666
Q gi|255764490|r 241 SFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKG--PIIIEMLTYRYRGHSM 289 (364)
Q Consensus 241 ~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~g--P~lie~~tyR~~gHs~ 289 (364)
.|+ +.+-..++.++++.+..|.+.+-+.+- |+++-..-|+. +|..
T Consensus 130 -~G~--i~l~~~n~QEa~D~~i~Af~iAE~~rv~lPv~v~~Dgf~l-sH~~ 176 (395)
T PRK08367 130 -TGW--LQFYAENNQEALDLILIAYKVAEDERVLLPAMVGFDAFIL-THTV 176 (395)
T ss_pred -CCE--EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHH-HCCE
T ss_conf -752--9982687677799999999999875367877997163564-5315
No 160
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=85.44 E-value=0.45 Score=27.01 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=22.8
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHH
Q ss_conf 344443310256654302456765443211401110
Q gi|255764490|r 178 RSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIY 213 (364)
Q Consensus 178 ~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvif 213 (364)
+.++. +...|-|+...+..-|-..||..+++||+.
T Consensus 230 ~AkrP-vIl~G~G~~~~~a~~~l~~Lae~l~iPV~t 264 (612)
T PRK07789 230 AARRP-VLYVGGGVIRAEASEELRELAELTGIPVVT 264 (612)
T ss_pred HCCCC-EEEECCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 27996-899897713465899999999961997898
No 161
>pfam02779 Transket_pyr Transketolase, pyrimidine binding domain. This family includes transketolase enzymes, pyruvate dehydrogenases, and branched chain alpha-keto acid decarboxylases.
Probab=85.22 E-value=0.61 Score=26.14 Aligned_cols=104 Identities=19% Similarity=0.265 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 432543100112334444331025665430245676-5443211401110221034344444323214864357777763
Q gi|255764490|r 165 SLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYES-FNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFN 243 (364)
Q Consensus 165 p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ea-ln~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~g 243 (364)
..|+|+|++ +...++...|+|= .+...+++ .|.++.|++|+.+|+---+++.+..-..+. .+.+.+---.
T Consensus 62 g~a~G~A~~----G~~~iv~~~f~~F--~~~r~~~~i~~~~~~~~~~v~~v~~~~g~~~g~~G~tHh---s~~~~a~~~~ 132 (174)
T pfam02779 62 GIANGMALH----GLLPPVEATFGDF--ANIRADAAIRHYAALGKLPVPFVVTRDPIGVGEDGPTHQ---SQEDEAYLRA 132 (174)
T ss_pred HHHHHHHHH----CCCCCCCHHHHHH--HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC---CCHHHHHHHH
T ss_conf 999999970----9964111217888--888659999999985899998786664602567715465---6428999975
Q ss_pred HHHHHH-HCCHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf 111121-000023368875421024554546558983
Q gi|255764490|r 244 IPGMQV-DGMDIRAVKATMDKAVAYCRAHKGPIIIEM 279 (364)
Q Consensus 244 i~~~~v-DG~D~~~v~~~~~~a~~~~r~~~gP~lie~ 279 (364)
+|+++| -=.|+.+....++.|+++ ++++|++|-.
T Consensus 133 iPgl~V~~Ps~~~da~~ll~~ai~~--~~~~Pv~i~~ 167 (174)
T pfam02779 133 IPGLKVVRPSDPAEAKGLLRAAIRR--DDDDPVVFRL 167 (174)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHC--CCCCCEEEEE
T ss_conf 8998899619999999999999964--8998389983
No 162
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=85.19 E-value=0.52 Score=26.61 Aligned_cols=94 Identities=13% Similarity=0.115 Sum_probs=47.4
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC---CCCCCCCCCCCCCCCHHHHHHHHHHHHHHH----H
Q ss_conf 344443310256654302456765443211401110221034---344444323214864357777763111121----0
Q gi|255764490|r 178 RSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ---YAMGTSVSRASAQTNFSKRGVSFNIPGMQV----D 250 (364)
Q Consensus 178 ~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~---~aist~~~~~~~~~~i~~ra~~~gi~~~~v----D 250 (364)
++..++++..|=|++|- .-++--|-.-+.|+|++.-+.. .+.... |. .+.....+.+--...+| +
T Consensus 59 gkp~v~~~t~GPG~~N~---~~gl~~A~~d~~Pvl~itg~~~~~~~g~g~~---Q~--~dq~~l~~~itK~s~~v~~~~~ 130 (162)
T cd07037 59 GRPVAVVCTSGTAVANL---LPAVVEAYYSGVPLLVLTADRPPELRGTGAN---QT--IDQVGLFGDYVRWSVDLPPPED 130 (162)
T ss_pred CCCEEEEECCCCHHHHH---HHHHHHHHHCCCCEEEEECCCCHHHCCCCCC---CC--CCHHHHHHHHHCEEEECCCCCC
T ss_conf 99879994788358888---8999987532998899968997886178988---64--3787773655207877688323
Q ss_pred CCHHHHHHHHHHHHCCCCCCCC-CCEEEEE
Q ss_conf 0002336887542102455454-6558983
Q gi|255764490|r 251 GMDIRAVKATMDKAVAYCRAHK-GPIIIEM 279 (364)
Q Consensus 251 G~D~~~v~~~~~~a~~~~r~~~-gP~lie~ 279 (364)
..|...+.+.+++|+..+..++ ||+.|++
T Consensus 131 ~~~~~~i~~~l~~A~~~A~tg~pGPV~l~l 160 (162)
T cd07037 131 DDDLWYLLRLANRAVLEALSAPPGPVHLNL 160 (162)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf 655789999999999997189999689848
No 163
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=84.64 E-value=0.36 Score=27.66 Aligned_cols=12 Identities=25% Similarity=0.130 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999984
Q gi|255764490|r 338 KIINNSVEFAQS 349 (364)
Q Consensus 338 ~~v~~a~~~A~~ 349 (364)
+++++|++.|.+
T Consensus 524 ~el~~al~~al~ 535 (574)
T PRK06466 524 KDLKPKLEEAFA 535 (574)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999985
No 164
>PRK08199 acetolactate synthase 2 catalytic subunit; Validated
Probab=84.43 E-value=0.46 Score=26.95 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999998479878
Q gi|255764490|r 335 NVRKIINNSVEFAQSDKEPD 354 (364)
Q Consensus 335 ~~~~~v~~a~~~A~~~p~P~ 354 (364)
+..+++++++++|.+...|.
T Consensus 506 ~~~~el~~al~~a~~~~gp~ 525 (553)
T PRK08199 506 ERTEDFAPAFERALASGKPA 525 (553)
T ss_pred CCHHHHHHHHHHHHHCCCCE
T ss_conf 99999999999998589959
No 165
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=84.37 E-value=0.39 Score=27.43 Aligned_cols=20 Identities=5% Similarity=0.180 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999998479878
Q gi|255764490|r 335 NVRKIINNSVEFAQSDKEPD 354 (364)
Q Consensus 335 ~~~~~v~~a~~~A~~~p~P~ 354 (364)
+-.++++++++.|.++..|.
T Consensus 499 ~~~~el~~al~~al~~~~P~ 518 (548)
T PRK08978 499 TRKDQVEAALDTLLNSEGPY 518 (548)
T ss_pred CCHHHHHHHHHHHHHCCCCE
T ss_conf 99999999999998189969
No 166
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=84.24 E-value=0.46 Score=26.93 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHH
Q ss_conf 43310256654302456765443211401110
Q gi|255764490|r 182 ICVVCFGDGAANQGQVYESFNIAALWNLNVIY 213 (364)
Q Consensus 182 v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvif 213 (364)
-.+.+.|.|....+..-|...||-.+++||+.
T Consensus 223 rPvIl~G~g~~~~~a~~~l~~lae~l~iPV~t 254 (587)
T PRK06965 223 RPYIYTGGGVILANASRELRQLADLLGYPVTN 254 (587)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHCCCEEH
T ss_conf 98897078820434899999999997888062
No 167
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=83.97 E-value=0.61 Score=26.14 Aligned_cols=20 Identities=10% Similarity=0.101 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999998479878
Q gi|255764490|r 335 NVRKIINNSVEFAQSDKEPD 354 (364)
Q Consensus 335 ~~~~~v~~a~~~A~~~p~P~ 354 (364)
+...+++++++.|.++..|.
T Consensus 495 ~t~~eL~~al~~A~~~~gP~ 514 (521)
T PRK07092 495 SDAAELADALARALAADRPV 514 (521)
T ss_pred CCHHHHHHHHHHHHHCCCCE
T ss_conf 99999999999998389978
No 168
>PRK08266 hypothetical protein; Provisional
Probab=83.83 E-value=0.5 Score=26.72 Aligned_cols=26 Identities=27% Similarity=0.449 Sum_probs=12.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCHHHH
Q ss_conf 0256654302456765443211401110
Q gi|255764490|r 186 CFGDGAANQGQVYESFNIAALWNLNVIY 213 (364)
Q Consensus 186 ~~GDGa~~eG~f~Ealn~A~~~~lPvif 213 (364)
+.|.|+...+ -|...||-.+++|++.
T Consensus 208 i~G~g~~~a~--~~l~~lae~l~~Pv~~ 233 (531)
T PRK08266 208 FVGGGAIDAG--DEILELAEMLQAPVVA 233 (531)
T ss_pred EECCHHHHHH--HHHHHHHHHHCCCCCC
T ss_conf 7683175799--9999999984998211
No 169
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=83.83 E-value=0.47 Score=26.91 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHCCCC
Q ss_conf 99999999999847987
Q gi|255764490|r 337 RKIINNSVEFAQSDKEP 353 (364)
Q Consensus 337 ~~~v~~a~~~A~~~p~P 353 (364)
.+++++|++.|.++.-|
T Consensus 527 ~~el~~Al~~Al~~~gP 543 (588)
T CHL00099 527 RKDLKSKLQRALDYDGP 543 (588)
T ss_pred HHHHHHHHHHHHCCCCC
T ss_conf 99999999999829997
No 170
>pfam02776 TPP_enzyme_N Thiamine pyrophosphate enzyme, N-terminal TPP binding domain.
Probab=83.45 E-value=0.32 Score=27.96 Aligned_cols=96 Identities=15% Similarity=0.172 Sum_probs=53.5
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 334444331025665430245676544321140111022103434-4444323214864357777763111121000023
Q gi|255764490|r 177 RRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYA-MGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIR 255 (364)
Q Consensus 177 ~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~a-ist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~ 255 (364)
.++-.++++..|=|.++ ..-++--|-.-+.|+|++.-+-... ..... -|. ..+.....+.+--...+| .++.
T Consensus 62 tg~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~-~q~-~~d~~~~~~~~tk~~~~v--~~~~ 134 (172)
T pfam02776 62 TGKPGVVLVTSGPGATN---ALTGLANAYVDSIPVLVISGQVPTSDLGQGA-FQE-ELDQLALFRPVTKWAERV--TSPD 134 (172)
T ss_pred HCCCEEEEEECCCHHHH---HHHHHHHHHHCCCCEEEEECCCCHHHCCCCC-CHH-HHHHHCCCCCEEEEEEEC--CCHH
T ss_conf 69987999835806887---9999999987599849993688777607895-200-045541456606688888--9999
Q ss_pred HHHHHHHHHCCCCCCC-CCCEEEEE
Q ss_conf 3688754210245545-46558983
Q gi|255764490|r 256 AVKATMDKAVAYCRAH-KGPIIIEM 279 (364)
Q Consensus 256 ~v~~~~~~a~~~~r~~-~gP~lie~ 279 (364)
++.+.+.+|+..++.+ .||+.|++
T Consensus 135 ~~~~~i~~A~~~a~~~~~GPV~l~i 159 (172)
T pfam02776 135 EIPEALDRAFRTALSGRPGPVYLEL 159 (172)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf 9999999999998329997799997
No 171
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=83.20 E-value=0.57 Score=26.36 Aligned_cols=20 Identities=5% Similarity=0.152 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999998479878
Q gi|255764490|r 335 NVRKIINNSVEFAQSDKEPD 354 (364)
Q Consensus 335 ~~~~~v~~a~~~A~~~p~P~ 354 (364)
+..+++++++++|.+++.|.
T Consensus 513 ~~~~el~~Al~~a~~~~~p~ 532 (560)
T PRK08527 513 TTKEEFDKALKQALKSDKVS 532 (560)
T ss_pred CCHHHHHHHHHHHHHCCCCE
T ss_conf 99999999999998189939
No 172
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=82.58 E-value=0.68 Score=25.86 Aligned_cols=20 Identities=5% Similarity=0.069 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999998479878
Q gi|255764490|r 335 NVRKIINNSVEFAQSDKEPD 354 (364)
Q Consensus 335 ~~~~~v~~a~~~A~~~p~P~ 354 (364)
+-.+++++|+++|.+++-|.
T Consensus 527 ~~~~el~~Al~~Al~~~gP~ 546 (594)
T PRK09107 527 EKPGDLDDAIQEMIDVDKPV 546 (594)
T ss_pred CCHHHHHHHHHHHHHCCCCE
T ss_conf 99999999999998289988
No 173
>pfam01855 POR_N domain. This family includes the N terminal structural domain of the pyruvate ferredoxin oxidoreductase. This domain binds thiamine diphosphate, and along with domains II and IV, is involved in inter subunit contacts. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited.
Probab=82.49 E-value=1.2 Score=24.23 Aligned_cols=114 Identities=15% Similarity=0.107 Sum_probs=70.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 43254310011233444433102566543024567654432114011102210343444443232148643577777631
Q gi|255764490|r 165 SLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNI 244 (364)
Q Consensus 165 p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi 244 (364)
..+.|++++- . +...+.-|=|- -..+|.|.+|+-.++|+++++-+-..+ ++...-+.-..++. -+..+|+
T Consensus 50 ~~~~GAs~aG----a-ra~taTs~~Gl---~lm~e~l~~aag~~~P~V~~v~~R~~~-~~gl~~~~eq~D~~-~~rd~g~ 119 (230)
T pfam01855 50 SAVIGAAAAG----A-RAMTATSGQGL---LLMIENLGKAAGEELPIVIHVVARAGP-SPGLSIFGDQGDLM-AARDTGW 119 (230)
T ss_pred HHHHHHHHHC----C-CEEEECCCCCH---HHHHHHHHHHHHCCCCEEEEEEECCCC-CCCCCCCCCHHHHH-HHHHCCC
T ss_conf 9999999848----6-20440267527---675678889987368859999966789-98776665137899-9985690
Q ss_pred HHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 11121000023368875421024554546558983156688766678
Q gi|255764490|r 245 PGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSD 291 (364)
Q Consensus 245 ~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D 291 (364)
..+.-.|+.++++.+..|.+.+-+-+-|+++-...||. .|+...
T Consensus 120 --~vl~~~~~QEa~d~~~~A~~lae~~~~Pv~v~~Dgf~~-SH~~~~ 163 (230)
T pfam01855 120 --IVLAPENVQEAFDLALVAFNLAEKVRTPVIHLFDGFRT-SHEYEK 163 (230)
T ss_pred --EEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCEE-ECCCCE
T ss_conf --89946999999999999999999988998998256613-442640
No 174
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=82.17 E-value=0.7 Score=25.80 Aligned_cols=166 Identities=12% Similarity=0.094 Sum_probs=92.4
Q ss_pred CCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98789999999623899899943006899999742122223432101234434556773211122123676674667674
Q gi|255764490|r 86 IGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVS 165 (364)
Q Consensus 86 ~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~~~p 165 (364)
.|.||++.|+..+ .-|+++.|- ++|.--+.|.+.+...-.++ .+...+ +- + +.+.
T Consensus 7 ~GNeAiA~ga~~a--g~~v~a~YP----------iTPsTeI~e~la~~~~~~g~-----~~~q~E-~E-----~--aA~~ 61 (350)
T PRK07119 7 KGNEAIAEAAIRA--GCRCYFGYP----------ITPQSEIPEYMSKRLPEVGG-----VFVQAE-SE-----V--AAIN 61 (350)
T ss_pred EHHHHHHHHHHHH--CCCEEEEEC----------CCCHHHHHHHHHHHHHHHCC-----EEEECC-CH-----H--HHHH
T ss_conf 0769999999995--998999959----------89764999999984365297-----899858-77-----9--9999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCH--HHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHH--HHHHH
Q ss_conf 325431001123344443310256654302--45676544321140111022103434444432321486435--77777
Q gi|255764490|r 166 LGTGIAFANKYRRSDKICVVCFGDGAANQG--QVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFS--KRGVS 241 (364)
Q Consensus 166 ~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG--~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~--~ra~~ 241 (364)
.|.|+++|- .. +++. +++.| ..+|.|.+|+-..+|+++++-+-. +-||. ..++-..++. -++.|
T Consensus 62 ~aiGAs~aG----aR--a~Ta----TSg~Gl~lm~E~l~~aa~~e~P~Viv~~~R~-gPs~g-~t~~eQ~D~~~a~~~~g 129 (350)
T PRK07119 62 MVYGAAATG----KR--VMTS----SSSPGISLKQEGISYLAGAELPCVIVNIMRG-GPGLG-NIQPSQADYFQAVKGGG 129 (350)
T ss_pred HHHHHHHHC----CC--EEEE----ECCCCHHHHHHHHHHHHHCCCCEEEEEEECC-CCCCC-CCCHHHHHHHHHHHCCC
T ss_conf 999999729----96--4764----3674288877588999854887499999758-88866-74127778999997277
Q ss_pred HH-HHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 63-11112100002336887542102455454655898315668876667
Q gi|255764490|r 242 FN-IPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMS 290 (364)
Q Consensus 242 ~g-i~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~ 290 (364)
.| ++.+.++-.|+.++++-+..|.+.+.+.+-|+++-..++ .+|+..
T Consensus 130 hGd~~~ivl~p~s~qEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~e 177 (350)
T PRK07119 130 HGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV--LGQMME 177 (350)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCH--HHCEEC
T ss_conf 886534998179999999999999999999889989973552--121101
No 175
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=81.64 E-value=0.74 Score=25.62 Aligned_cols=42 Identities=19% Similarity=0.172 Sum_probs=29.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHH
Q ss_conf 001123344443310256654302456765443211401110
Q gi|255764490|r 172 FANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIY 213 (364)
Q Consensus 172 ~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvif 213 (364)
.+.++.++-+-.+.+.|.|+...|..-|...||-.+++|++-
T Consensus 216 ~a~~lL~~AkrPvIi~G~g~~~~~a~~~l~~lae~~~iPV~t 257 (615)
T PRK07418 216 AALDLIEEAERPLLYVGGGAISAGAHAELKELAERFQIPVTT 257 (615)
T ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 999999847997899898705112899999999975897023
No 176
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=81.03 E-value=0.58 Score=26.31 Aligned_cols=16 Identities=13% Similarity=0.036 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHCCCC
Q ss_conf 9999999999847987
Q gi|255764490|r 338 KIINNSVEFAQSDKEP 353 (364)
Q Consensus 338 ~~v~~a~~~A~~~p~P 353 (364)
++++++++.|.+.+-|
T Consensus 520 ~el~~al~~al~~~gp 535 (564)
T PRK08155 520 ADPQAALQEAINRPGP 535 (564)
T ss_pred HHHHHHHHHHHCCCCC
T ss_conf 9999999999758994
No 177
>PRK08617 acetolactate synthase; Reviewed
Probab=80.53 E-value=0.72 Score=25.71 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999847987
Q gi|255764490|r 336 VRKIINNSVEFAQSDKEP 353 (364)
Q Consensus 336 ~~~~v~~a~~~A~~~p~P 353 (364)
..++++++++.|.+++-|
T Consensus 511 ~~~eL~~al~~A~~~~gP 528 (552)
T PRK08617 511 SPDELEPVLKEALATDGP 528 (552)
T ss_pred CHHHHHHHHHHHHHCCCC
T ss_conf 999999999999818995
No 178
>PRK07586 hypothetical protein; Validated
Probab=80.24 E-value=0.63 Score=26.08 Aligned_cols=20 Identities=10% Similarity=0.205 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999998479878
Q gi|255764490|r 335 NVRKIINNSVEFAQSDKEPD 354 (364)
Q Consensus 335 ~~~~~v~~a~~~A~~~p~P~ 354 (364)
+..++++.++++|.+++-|.
T Consensus 489 ~~~~el~~Al~~a~~~~gP~ 508 (514)
T PRK07586 489 TTAEEFADALARALAEPGPH 508 (514)
T ss_pred CCHHHHHHHHHHHHCCCCCE
T ss_conf 99999999999997289967
No 179
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=77.94 E-value=0.86 Score=25.20 Aligned_cols=16 Identities=6% Similarity=-0.072 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999999999847
Q gi|255764490|r 335 NVRKIINNSVEFAQSD 350 (364)
Q Consensus 335 ~~~~~v~~a~~~A~~~ 350 (364)
+..+++++|+++|.+.
T Consensus 519 ~~~~el~~Al~~Al~~ 534 (572)
T PRK08979 519 SDPAELESGLAKALAM 534 (572)
T ss_pred CCHHHHHHHHHHHHHC
T ss_conf 9999999999999857
No 180
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=75.19 E-value=1.4 Score=23.85 Aligned_cols=81 Identities=15% Similarity=0.116 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 456765443211401110221034344444323214864357-7777631111210000233688754210245545465
Q gi|255764490|r 196 QVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSK-RGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGP 274 (364)
Q Consensus 196 ~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~-ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP 274 (364)
...|+|-.++-..+|+|.++.+-... ++... .....++.. +--++ +-..+.-.|+.++++.+..|.+.+++.+-|
T Consensus 78 l~~e~l~~a~~~~~p~Vi~~~~r~g~-~~~~~-~~~q~D~~~~~~~g~--~~~vl~p~~~qE~~d~~~~A~~lae~~~~P 153 (160)
T cd07034 78 LMAEALYLAAGAELPLVIVVAQRPGP-STGLP-KPDQSDLMAARYGGH--PWPVLAPSSVQEAFDLALEAFELAEKYRLP 153 (160)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCC-CCCCC-CCCCHHHHHHHHCCC--CEEEEECCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 88879999984788889999745888-65455-544178999996799--879993799999999999999999986899
Q ss_pred EEEEEC
Q ss_conf 589831
Q gi|255764490|r 275 IIIEML 280 (364)
Q Consensus 275 ~lie~~ 280 (364)
+++-..
T Consensus 154 vi~~~D 159 (160)
T cd07034 154 VIVLSD 159 (160)
T ss_pred EEEECC
T ss_conf 899537
No 181
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=71.20 E-value=4.2 Score=20.81 Aligned_cols=164 Identities=15% Similarity=0.130 Sum_probs=90.0
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8987899999996238998999430068999997421222234321012--34434556773211122123676674667
Q gi|255764490|r 85 CIGQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGRQ--GGISKGKGGSMHMFSTKNGFYGGHGIVGA 162 (364)
Q Consensus 85 ~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk~--~g~~~Gr~gs~H~~~~~~~~~~~~~~vg~ 162 (364)
-.|.||++-|+..+ .-|+++.|- ++|.--++|.+.+. .|..+|. ++.+-+=. +
T Consensus 13 ~dGNeAvA~aa~~A--~~~v~a~YP----------ITPsSei~E~la~~~a~g~~~g~------------~iq~EsE~-a 67 (407)
T PRK09622 13 WDGNTAASNALRQA--QIDVVAAYP----------ITPSTPIVQNYGSFKANGYIDGE------------FVMVESEH-A 67 (407)
T ss_pred EEHHHHHHHHHHHH--CCCEEEEEC----------CCCCCHHHHHHHHHHHCCCCCCE------------EEEECCHH-H
T ss_conf 10489999999996--998999979----------78801999999997247884876------------99855789-9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 6743254310011233444433102566543024--56765443211401110221034344444323214864357777
Q gi|255764490|r 163 QVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQ--VYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGV 240 (364)
Q Consensus 163 ~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~--f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~ 240 (364)
.+..+.|++++ |.. +.+ +++++|- .+|.|..|+-..||+|+++.|- ++++|..-+.-..++. .+.
T Consensus 68 A~~a~~GAs~a----Gar--a~T----aTSspGl~LM~E~l~~aag~~lP~Vi~vv~R--~~~~~l~i~~dhsD~m-~~r 134 (407)
T PRK09622 68 AMSACVGAAAA----GGR--VAT----ATSSQGLALMVEVLYQASGMRLPIVLNLVNR--ALAAPLNVNGDHSDMY-LSR 134 (407)
T ss_pred HHHHHHHHHHH----CCC--EEE----ECCCCCHHHHHHHHHHHHHHHCCEEEEEECC--CCCCCCCCCCCHHHHH-HCC
T ss_conf 99999999853----878--673----0478738775208999998527848887415--6788888877889999-705
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHCCCCC--CCCCCEEEEECCCCCCCCCC
Q ss_conf 76311112100002336887542102455--45465589831566887666
Q gi|255764490|r 241 SFNIPGMQVDGMDIRAVKATMDKAVAYCR--AHKGPIIIEMLTYRYRGHSM 289 (364)
Q Consensus 241 ~~gi~~~~vDG~D~~~v~~~~~~a~~~~r--~~~gP~lie~~tyR~~gHs~ 289 (364)
..|+ +.+-..++.++++.+-.|.+.+- .-+-|+++-.+-|+. +|+.
T Consensus 135 dtG~--i~l~~~svQE~~D~~i~Af~iAE~~~~r~Pv~v~~DGf~~-sH~~ 182 (407)
T PRK09622 135 DSGW--ISLCTCNPQEAYDFTLMAFRIAEDQKVRVPTIVNQDGFLC-SHTA 182 (407)
T ss_pred CCCE--EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHH-HCCC
T ss_conf 8873--9983799899999999999998875778888997302354-1565
No 182
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=66.86 E-value=4.8 Score=20.40 Aligned_cols=100 Identities=22% Similarity=0.326 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH-HHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 4325431001123344443310256654302456765-443211401110221034344444323214864357777763
Q gi|255764490|r 165 SLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESF-NIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFN 243 (364)
Q Consensus 165 p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Eal-n~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~g 243 (364)
..|+|+|+. +...++. .+.. ... .-+|.+ |.++..++|++++.-.-+++.+..-..+. .+.+.+---.
T Consensus 53 g~a~GlA~~----G~~pi~~-~~~~--F~~-r~~eqi~~~~a~~~~~v~~v~~~~g~~~~~~G~tH~---~~ed~~~~~~ 121 (156)
T cd07033 53 GIAAGLALH----GLKPFVS-TFSF--FLQ-RAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQ---GIEDIALLRA 121 (156)
T ss_pred HHHHHHHHC----CCCCCHH-HHHH--HHH-HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC---CCCHHHHHHC
T ss_conf 999999975----9998113-5798--875-109999999775279965997688547778978805---5005878723
Q ss_pred HHHHHH-HCCHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf 111121-000023368875421024554546558983
Q gi|255764490|r 244 IPGMQV-DGMDIRAVKATMDKAVAYCRAHKGPIIIEM 279 (364)
Q Consensus 244 i~~~~v-DG~D~~~v~~~~~~a~~~~r~~~gP~lie~ 279 (364)
+|+++| .-.|+.++...++.+++ .++|+.|..
T Consensus 122 ~Pgl~i~~P~~~~e~~~ll~~a~~----~~~P~~irl 154 (156)
T cd07033 122 IPNMTVLRPADANETAAALEAALE----YDGPVYIRL 154 (156)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHH----CCCCEEEEE
T ss_conf 899489961999999999999982----899889997
No 183
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=66.61 E-value=5.6 Score=19.99 Aligned_cols=109 Identities=15% Similarity=0.185 Sum_probs=70.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCC-CCCCCCCH-HHHHHHH
Q ss_conf 432543100112334444331025665430245676544321140111022103434444432-32148643-5777776
Q gi|255764490|r 165 SLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVS-RASAQTNF-SKRGVSF 242 (364)
Q Consensus 165 p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~aist~~~-~~~~~~~i-~~ra~~~ 242 (364)
..+.|++++- .++..+.-|.|-+ ..+|++-+|+-..+|+++++-+...+ .+.. ......++ +.|..
T Consensus 61 s~v~GA~~aG-----ar~~TaTSg~Gl~---Lm~E~l~~a~~~~~P~Vi~~~~R~~p--s~g~p~~~dq~D~~~~r~~-- 128 (365)
T COG0674 61 SAVIGASYAG-----ARAFTATSGQGLL---LMAEALGLAAGTETPLVIVVAQRPLP--STGLPIKGDQSDLMAARDT-- 128 (365)
T ss_pred HHHHHHHHCC-----CCEEEECCCCHHH---HHHHHHHHHHHCCCCEEEEECCCCCC--CCCCCCCCCHHHHHHHHCC--
T ss_conf 9997046317-----6016742775288---88888888875517779997356767--7655566333789998814--
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 3111121000023368875421024554546558983156688766
Q gi|255764490|r 243 NIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHS 288 (364)
Q Consensus 243 gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs 288 (364)
|++-+-.. |+.+++..+..|.+.+-+-+-|+++-..-++. .|.
T Consensus 129 g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~-~h~ 171 (365)
T COG0674 129 GFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLA-SHE 171 (365)
T ss_pred CCHHHHHC--CHHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-CCC
T ss_conf 72565660--43778999999999987327877998502132-175
No 184
>TIGR00838 argH argininosuccinate lyase; InterPro: IPR009049 This entry represents argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens. ; GO: 0004056 argininosuccinate lyase activity, 0042450 arginine biosynthetic process via ornithine.
Probab=65.55 E-value=10 Score=18.36 Aligned_cols=89 Identities=13% Similarity=0.152 Sum_probs=50.3
Q ss_pred CCCCCCHHHHHHHHHHHHC-----CCH--HHHHH--------HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-
Q ss_conf 6654302456765443211-----401--11022--------1034344444323214864357777763111121000-
Q gi|255764490|r 189 DGAANQGQVYESFNIAALW-----NLN--VIYVI--------ENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGM- 252 (364)
Q Consensus 189 DGa~~eG~f~Ealn~A~~~-----~lP--vifvv--------enN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~- 252 (364)
||.+.=--+-|.|+.+|+. ++= +|+.| -.+.|+-+.+.=.|=.++|+++.+.| +.=+|-||
T Consensus 226 DaVSdRDFi~E~l~~~a~~m~hLSR~aEelIlw~s~EFgfieL~D~~stGSSiMPQKKNPD~aELiRG---K~Grv~G~L 302 (469)
T TIGR00838 226 DAVSDRDFIIELLFVAALIMVHLSRLAEELILWSSQEFGFIELPDEFSTGSSIMPQKKNPDVAELIRG---KTGRVIGNL 302 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEECCCCCCCCCCHHHHHHHHH---HHHHHHHHH
T ss_conf 66520789999999999997417689899999844687606745732005768888777207999987---552689999
Q ss_pred -HHHHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf -0233688754210245545465589831
Q gi|255764490|r 253 -DIRAVKATMDKAVAYCRAHKGPIIIEML 280 (364)
Q Consensus 253 -D~~~v~~~~~~a~~~~r~~~gP~lie~~ 280 (364)
=.+.++++.=-|.++=.++-+|-|-++.
T Consensus 303 ~g~L~~lKalP~aYNrDlQEdkE~LFD~v 331 (469)
T TIGR00838 303 TGLLTILKALPLAYNRDLQEDKEPLFDAV 331 (469)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 99999971123323510013783678899
No 185
>KOG0190 consensus
Probab=63.01 E-value=2.7 Score=22.06 Aligned_cols=106 Identities=17% Similarity=0.147 Sum_probs=56.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH-------HHHHHHHHC-C
Q ss_conf 44331025665430245676544321140111022103434444432321486435777776-------311112100-0
Q gi|255764490|r 181 KICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSF-------NIPGMQVDG-M 252 (364)
Q Consensus 181 ~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~-------gi~~~~vDG-~ 252 (364)
.+..+++ |-....+ +.+-+++...+ +|+..++.|+.++-....+......+|......| -+.+..+.- +
T Consensus 287 ~l~Fi~~-d~e~~~~-~~~~~Gl~~~~-~~~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~kp~~kSqpiPe~~ 363 (493)
T KOG0190 287 KLRFILI-DPESFAR-VLEFFGLEEEQ-LPIRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGKVKPHLKSQPIPEDN 363 (493)
T ss_pred CEEEEEE-CHHHHHH-HHHHCCCCCCC-CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHCCCCCCCCC
T ss_conf 2599997-7677367-88756832136-8705885056566467873333478899999998547502000168798323
Q ss_pred HHHHHHHH-HHHHCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 02336887-542102455454655898315668876667
Q gi|255764490|r 253 DIRAVKAT-MDKAVAYCRAHKGPIIIEMLTYRYRGHSMS 290 (364)
Q Consensus 253 D~~~v~~~-~~~a~~~~r~~~gP~lie~~tyR~~gHs~~ 290 (364)
|-..|... -+.--+.+...++-+|||..+ +|+||+..
T Consensus 364 ~~~pVkvlVgknfd~iv~de~KdVLvEfYA-PWCgHCk~ 401 (493)
T KOG0190 364 DRSPVKVVVGKNFDDIVLDEGKDVLVEFYA-PWCGHCKA 401 (493)
T ss_pred CCCCEEEEECCCHHHHHHCCCCCEEEEEEC-CCCHHHHH
T ss_conf 668738985067888751578767999707-54345565
No 186
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=60.61 E-value=12 Score=17.93 Aligned_cols=39 Identities=26% Similarity=0.436 Sum_probs=26.1
Q ss_pred HHHHHCCHHHHH--HHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf 112100002336--887542102455454655898315668
Q gi|255764490|r 246 GMQVDGMDIRAV--KATMDKAVAYCRAHKGPIIIEMLTYRY 284 (364)
Q Consensus 246 ~~~vDG~D~~~v--~~~~~~a~~~~r~~~gP~lie~~tyR~ 284 (364)
+++.|+.+-..- .+-++...+.|+...-|.|+|..||-.
T Consensus 129 yy~pD~~~ein~~k~a~ve~ig~eC~~~dipf~lE~l~Y~~ 169 (326)
T PRK04161 129 YYDVDGDEEINLQKQAYIERIGSECTAEDIPFFLELLSYDE 169 (326)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 97899987888999999999999998779983898851078
No 187
>PRK11032 hypothetical protein; Provisional
Probab=59.11 E-value=14 Score=17.43 Aligned_cols=47 Identities=19% Similarity=0.160 Sum_probs=33.9
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 79999999987899989999999999999999999998479878879
Q gi|255764490|r 311 IEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPAE 357 (364)
Q Consensus 311 I~~~~~~L~~~g~~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~~~ 357 (364)
|...++++.+.|-+|++|++.|..-++.++++...+...+.....++
T Consensus 30 ~e~a~~~~~aa~eLT~eE~~li~~ylkRDl~e~~~~~~~s~~~~~~s 76 (160)
T PRK11032 30 VESARKRVDAAGELTRDEVDLITRAVRRDLEEFAMSYEESKEEFSDS 76 (160)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999999770799999999999999999999998564110005
No 188
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=55.77 E-value=15 Score=17.26 Aligned_cols=108 Identities=13% Similarity=0.188 Sum_probs=65.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCC-CCCCCCCCCCC-CCCHHHHH
Q ss_conf 76743254310011233444433102566543024567654432114011102210343-44444323214-86435777
Q gi|255764490|r 162 AQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQY-AMGTSVSRASA-QTNFSKRG 239 (364)
Q Consensus 162 ~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~-aist~~~~~~~-~~~i~~ra 239 (364)
.++.+++|+.+|-| +..+-+-..|=|-+- -..+|| -.++++|++.++..-|+ .-.. +-|.+ +.-+-+..
T Consensus 53 eg~GIcAGa~lAGk---k~ailmQnsGlGNsi--Nal~SL--~~ty~iPl~ml~ShRG~~~E~i--~AQVpmGr~~~kiL 123 (172)
T COG4032 53 EGVGICAGAYLAGK---KPAILMQNSGLGNSI--NALASL--YVTYKIPLLMLASHRGVLKEGI--EAQVPMGRALPKIL 123 (172)
T ss_pred CCEEEEHHHHHCCC---CCEEEEECCCCCHHH--HHHHHH--HHHHCCCHHHHHHCCCHHHCCC--CCCCCCCHHHHHHH
T ss_conf 25021024554289---967988436731689--999999--9874223555201134130377--31364212158999
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf 77631111210000233688754210245545465589831
Q gi|255764490|r 240 VSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEML 280 (364)
Q Consensus 240 ~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~ 280 (364)
++.++|.+++-| +.+-+..+..+...+-+.+.|+.+-+.
T Consensus 124 e~~~lpt~t~~~--p~Ea~~li~~~~~~a~~~s~pv~vlls 162 (172)
T COG4032 124 EGLELPTYTIIG--PEEALPLIENAILDAFENSRPVAVLLS 162 (172)
T ss_pred HHCCCCCCCCCC--HHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 656886314578--888887787899999871786599945
No 189
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=51.72 E-value=16 Score=17.04 Aligned_cols=39 Identities=28% Similarity=0.349 Sum_probs=25.7
Q ss_pred HHHHHCCHHHHHH--HHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf 1121000023368--87542102455454655898315668
Q gi|255764490|r 246 GMQVDGMDIRAVK--ATMDKAVAYCRAHKGPIIIEMLTYRY 284 (364)
Q Consensus 246 ~~~vDG~D~~~v~--~~~~~a~~~~r~~~gP~lie~~tyR~ 284 (364)
+++.|..+-+... .-+++..+.|+...-|.|+|..||-.
T Consensus 127 yy~pD~~~~in~~k~~~Verig~eC~~~dipf~lE~l~Y~~ 167 (324)
T PRK12399 127 YYDVDEDDEINEQKKAYIERIGSECVAEDIPFFLEILTYDE 167 (324)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 97799977888999999999999999769971576511367
No 190
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases , . However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity . It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ and other members of this family turned out to be erroneous , .; GO: 0009024 tagatose-6-phosphate kinase activity, 0019402 galactitol metabolic process.
Probab=50.92 E-value=6.3 Score=19.67 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=7.8
Q ss_pred CCCCCCC-CCCHHHHHHH
Q ss_conf 6678766-7899999998
Q gi|255764490|r 288 SMSDPAN-YRTREEINEM 304 (364)
Q Consensus 288 s~~D~~~-YR~~~Ei~~~ 304 (364)
|-||--+ |+|..+++..
T Consensus 355 SySDRIRYYWP~P~~~~A 372 (430)
T TIGR02810 355 SYSDRIRYYWPHPRIAAA 372 (430)
T ss_pred CCCCCCCCCCCHHHHHHH
T ss_conf 721353357970789999
No 191
>KOG2391 consensus
Probab=44.98 E-value=12 Score=17.78 Aligned_cols=66 Identities=14% Similarity=0.261 Sum_probs=37.6
Q ss_pred CCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHH--------------HHHHHHHHHHHHHCCCCCHH
Q ss_conf 8766789999999898389379999999987899989999999999--------------99999999999847987887
Q gi|255764490|r 291 DPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNV--------------RKIINNSVEFAQSDKEPDPA 356 (364)
Q Consensus 291 D~~~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~te~e~~~i~~~~--------------~~~v~~a~~~A~~~p~P~~~ 356 (364)
|.-+||.++|++..++..--|.+.++.|..- ..+++++++.. +..++++.+.+++...++++
T Consensus 217 eklR~r~eeeme~~~aeq~slkRt~EeL~~G----~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~D 292 (365)
T KOG2391 217 EKLRRRREEEMERLQAEQESLKRTEEELNIG----KQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDID 292 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 9999999999988999999988569999866----999999999999999999864589889999977654167679810
Q ss_pred HHHH
Q ss_conf 9862
Q gi|255764490|r 357 ELYS 360 (364)
Q Consensus 357 ~l~~ 360 (364)
+.++
T Consensus 293 ~~~~ 296 (365)
T KOG2391 293 EAIE 296 (365)
T ss_pred HHHH
T ss_conf 3332
No 192
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=42.59 E-value=17 Score=16.84 Aligned_cols=97 Identities=22% Similarity=0.238 Sum_probs=50.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH--------HCCCHHHHHHHCCCCCCCCCCCCCCCCCCHH
Q ss_conf 43254310011233444433102566543024567654432--------1140111022103434444432321486435
Q gi|255764490|r 165 SLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAA--------LWNLNVIYVIENNQYAMGTSVSRASAQTNFS 236 (364)
Q Consensus 165 p~A~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~--------~~~lPvifvvenN~~aist~~~~~~~~~~i~ 236 (364)
..|+|+|++ |-..|+...+.|=.. -.+---.|-++ .+++|+++..-.-.+.-..+.. +. ++.
T Consensus 58 g~a~GlAl~----G~~Pvv~~~~~~Fl~--~a~dQi~n~~a~~~~~s~g~~~~pvvir~~~g~~~~~g~~H---s~-~~~ 127 (167)
T cd07036 58 GLAVGAAMN----GLRPIVEIMFADFAL--PAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQH---SQ-SLE 127 (167)
T ss_pred HHHHHHHHC----CCEEEEEEEEHHHHH--HHHHHHHHHHHHHEECCCCCCCCCEEEEECCCCCCCCCCCC---CC-CHH
T ss_conf 999999985----993798862255540--05999997756761203894058889996066776745300---36-879
Q ss_pred HHHHHHHHHHHHH-HCCHHHHHHHHHHHHCCCCCCCCCCEEE
Q ss_conf 7777763111121-0000233688754210245545465589
Q gi|255764490|r 237 KRGVSFNIPGMQV-DGMDIRAVKATMDKAVAYCRAHKGPIII 277 (364)
Q Consensus 237 ~ra~~~gi~~~~v-DG~D~~~v~~~~~~a~~~~r~~~gP~li 277 (364)
+---.||+++| -=.|+.+.+..++.|++. .+|+++
T Consensus 128 --a~~~~iPgl~V~~Ps~~~d~~~ll~~a~~~----~~Pv~~ 163 (167)
T cd07036 128 --AWFAHIPGLKVVAPSTPYDAKGLLKAAIRD----DDPVIF 163 (167)
T ss_pred --HHHCCCCCCEEEEECCHHHHHHHHHHHHHC----CCCEEE
T ss_conf --998079996899729999999999999839----997899
No 193
>pfam07295 DUF1451 Protein of unknown function (DUF1451). This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=40.79 E-value=27 Score=15.59 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=30.3
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 799999999878999899999999999999999999984798
Q gi|255764490|r 311 IEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKE 352 (364)
Q Consensus 311 I~~~~~~L~~~g~~te~e~~~i~~~~~~~v~~a~~~A~~~p~ 352 (364)
|...++++.+.+-+|++|++.+..-++.++++..+....+..
T Consensus 20 v~~a~e~~~a~~elT~eE~~lv~~ylkRDl~e~~~~~~~~~~ 61 (148)
T pfam07295 20 IEQAKEYLQAAEELTREELALIGAYLKRDLEEFLRSYEETGE 61 (148)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999987658999999999999999999999873333
No 194
>pfam02979 NHase_alpha Nitrile hydratase, alpha chain.
Probab=38.84 E-value=29 Score=15.40 Aligned_cols=14 Identities=21% Similarity=0.447 Sum_probs=7.0
Q ss_pred CCHHHHHHHHHHCCH
Q ss_conf 899999998983893
Q gi|255764490|r 296 RTREEINEMRSNHDP 310 (364)
Q Consensus 296 R~~~Ei~~~~~~~DP 310 (364)
.++++++.+- .||-
T Consensus 169 ~~e~~La~lV-TRds 182 (189)
T pfam02979 169 WSEEQLAELV-TRDS 182 (189)
T ss_pred CCHHHHHHHH-CHHC
T ss_conf 9999999773-3111
No 195
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=38.49 E-value=18 Score=16.78 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=32.1
Q ss_pred CCCCCCCCC--CCCHHHHHHHHHHHHCCCHHHHHHHCCC
Q ss_conf 331025665--4302456765443211401110221034
Q gi|255764490|r 183 CVVCFGDGA--ANQGQVYESFNIAALWNLNVIYVIENNQ 219 (364)
Q Consensus 183 ~v~~~GDGa--~~eG~f~Ealn~A~~~~lPvifvvenN~ 219 (364)
.++|.+|+. .....+.+++..+...+.+++|-|||+.
T Consensus 144 ~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Ed~~ 182 (430)
T COG0044 144 FKGFMDDSTGALDDDVLEEALEYAAELGALILVHAEDDD 182 (430)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCH
T ss_conf 699956987656889999999999855986999717803
No 196
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=37.86 E-value=6.3 Score=19.64 Aligned_cols=40 Identities=10% Similarity=0.050 Sum_probs=22.2
Q ss_pred HHHHCCCCCCCCCCCCCHHH-HHHHHHHHCCCCCE-EEECCCCHH
Q ss_conf 99978987772205898789-99999962389989-994300689
Q gi|255764490|r 71 QLYGMGMVGGFCHLCIGQEA-VIVGMKMSLTEGDQ-MITAYREHG 113 (364)
Q Consensus 71 ~l~~qg~i~g~~~~~~GqEa-~~vg~~~al~~~D~-~~~~yR~~~ 113 (364)
++-++.+|- ++. +|-|+ ...|+...|+.... +|.--+.-+
T Consensus 62 ~fa~~~~id-Lvv--vGPE~PL~~Gi~D~l~~~gi~vfGP~k~aA 103 (426)
T PRK13789 62 SFLKSNPFD-LIV--VGPEDPLVAGFADWAAELGIPCFGPDSYCA 103 (426)
T ss_pred HHHHHCCCC-EEE--ECCCHHHHHHHHHHHHHCCCEEECCCHHHH
T ss_conf 999984999-999--896688863179998416991689598995
No 197
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=37.44 E-value=31 Score=15.26 Aligned_cols=26 Identities=35% Similarity=0.740 Sum_probs=15.4
Q ss_pred HHHHHCCCCCCCCCCEEEEECCCCCC
Q ss_conf 75421024554546558983156688
Q gi|255764490|r 260 TMDKAVAYCRAHKGPIIIEMLTYRYR 285 (364)
Q Consensus 260 ~~~~a~~~~r~~~gP~lie~~tyR~~ 285 (364)
-++...+.|+...-|.|||..||...
T Consensus 146 ~verig~eC~~~dipf~lE~l~Y~~~ 171 (340)
T PRK12858 146 FVERVGAECRANDIPFFLELLTYDFK 171 (340)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 99999999987799807887401688
No 198
>pfam04273 DUF442 Putative phosphatase (DUF442). Although this domain is uncharacterized it seems likely that it performs a phosphatase function.
Probab=37.02 E-value=17 Score=16.98 Aligned_cols=52 Identities=13% Similarity=0.117 Sum_probs=29.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHH--HCCHHH-HHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 214864357777763111121--000023-3688754210245545465589831566
Q gi|255764490|r 229 ASAQTNFSKRGVSFNIPGMQV--DGMDIR-AVKATMDKAVAYCRAHKGPIIIEMLTYR 283 (364)
Q Consensus 229 ~~~~~~i~~ra~~~gi~~~~v--DG~D~~-~v~~~~~~a~~~~r~~~gP~lie~~tyR 283 (364)
|.....+...+++.||..+.+ ++.++. +..+.+..+++ +-.+|+|++|.|=+
T Consensus 43 qp~~~~~~~~a~~~Gl~y~~iPv~~~~~t~~~v~~f~~~l~---~~~~Pvl~~CrSG~ 97 (110)
T pfam04273 43 QPSNAAEQAAARAAGLAYRFIPVISGQITEADVEAFQRALA---AAEGPVLAHCRSGT 97 (110)
T ss_pred CCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHH---HCCCCEEEECCCCH
T ss_conf 98889999999983997999644778989999999999998---58998999889987
No 199
>pfam09851 DUF2078 Predicted membrane protein (DUF2078). This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=36.47 E-value=32 Score=15.16 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 893799999999878999899999999999
Q gi|255764490|r 308 HDPIEQVRKRLLHNKWASEGDLKEIEMNVR 337 (364)
Q Consensus 308 ~DPI~~~~~~L~~~g~~te~e~~~i~~~~~ 337 (364)
.+|+..++++. ++|-+|++|+.+..+..+
T Consensus 44 ~~al~IL~eRy-ArGEI~eeEy~~rk~~L~ 72 (73)
T pfam09851 44 SDALEILKERY-ARGEIDEEEYEERKKDLR 72 (73)
T ss_pred CCHHHHHHHHH-HCCCCCHHHHHHHHHHHC
T ss_conf 68999999998-658989999999998863
No 200
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=35.40 E-value=17 Score=16.84 Aligned_cols=60 Identities=15% Similarity=0.233 Sum_probs=33.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH-------HHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 5676544321140111022103434444432321486435777776-------3111121000023368875421024
Q gi|255764490|r 197 VYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSF-------NIPGMQVDGMDIRAVKATMDKAVAY 267 (364)
Q Consensus 197 f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~-------gi~~~~vDG~D~~~v~~~~~~a~~~ 267 (364)
...+...|.+.++|||+||.-- ++|+ +++..+.|| .|.|+.+|----..-++-++.|++.
T Consensus 100 ~gSTA~lAk~l~~PVvLVid~~--~~s~---------S~AAiv~G~~~fdp~v~iaGVIlNrVgserH~~llr~Ale~ 166 (451)
T COG1797 100 TGSTADLAKLLGAPVVLVVDAS--GLSR---------SVAAIVKGFKHFDPDVNIAGVILNRVGSERHYELLRDALEE 166 (451)
T ss_pred CCCHHHHHHHHCCCEEEEEECC--CHHH---------HHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 7779999998599989999575--2257---------89999988986199882578997247778899999987553
No 201
>KOG1615 consensus
Probab=34.60 E-value=31 Score=15.26 Aligned_cols=93 Identities=19% Similarity=0.200 Sum_probs=45.4
Q ss_pred CCCCCCCHHHHHHHHHHHCCC--CC--EEEECCCCHHHHHH--HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 220589878999999962389--98--99943006899999--7421222234321012344345567732111221236
Q gi|255764490|r 81 FCHLCIGQEAVIVGMKMSLTE--GD--QMITAYREHGHILA--CGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFY 154 (364)
Q Consensus 81 ~~~~~~GqEa~~vg~~~al~~--~D--~~~~~yR~~~~~l~--~G~~~~~~~ae~~gk~~g~~~Gr~gs~H~~~~~~~~~ 154 (364)
..+++-|-+- .+.-|.. .+ .+++-.|.....++ .|+|...++|..+- ++....+.
T Consensus 86 k~~lT~Gi~e----Lv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~---------------fd~~Gk~~ 146 (227)
T KOG1615 86 KPTLTPGIRE----LVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELL---------------FDKDGKYL 146 (227)
T ss_pred CCCCCCCHHH----HHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHEEE---------------ECCCCCCC
T ss_conf 9866878999----9999997698699974771888999998719967662222256---------------43577513
Q ss_pred C--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7--667466767432543100112334444331025665430
Q gi|255764490|r 155 G--GHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQ 194 (364)
Q Consensus 155 ~--~~~~vg~~~p~A~G~A~a~k~~~~~~v~v~~~GDGa~~e 194 (364)
+ .++++.-+ ..-+.+.+...++.+..++|.+|||++.=
T Consensus 147 gfd~~~ptsds--ggKa~~i~~lrk~~~~~~~~mvGDGatDl 186 (227)
T KOG1615 147 GFDTNEPTSDS--GGKAEVIALLRKNYNYKTIVMVGDGATDL 186 (227)
T ss_pred CCCCCCCCCCC--CCCHHHHHHHHHCCCHHEEEEECCCCCCC
T ss_conf 54467862268--86189999998088822067853786544
No 202
>pfam01700 Orbi_VP3 Orbivirus VP3 (T2) protein. The orbivirus VP3 protein is part of the virus core and makes a 'subcore' shell made up of 120 copies of the 100K protein. VP3 particles can also bind RNA and are fundamental in the early stages of viral core formation. Also found in the family is structural core protein VP2 from broadhaven virus which is similar to VP3 in bluetongue virus. Orbivirus are part of the larger reoviridae which have a dsRNA genome of 10-12 linear segments; orbivirus found in this family include bluetongue virus and epizootic hemorrhagic disease virus.
Probab=34.39 E-value=27 Score=15.61 Aligned_cols=37 Identities=22% Similarity=0.177 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCCCHH
Q ss_conf 88899999999989999999999999978987---77220589878
Q gi|255764490|r 47 FNKEQELSAYRLMLLIRRFEEKAGQLYGMGMV---GGFCHLCIGQE 89 (364)
Q Consensus 47 ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i---~g~~~~~~GqE 89 (364)
++.++-.++|..+. +|...+..+|-. .-+.|...|.|
T Consensus 106 ~~~~~p~~f~~~vl------~rV~~iRd~GSFIL~dipT~~~~G~E 145 (890)
T pfam01700 106 ITEEEPEEFYSTIL------KKVKFIRDEGSFILHDIPTHDHRGME 145 (890)
T ss_pred CCCCCHHHHHHHHH------HHHHHHHHCCCEEEECCCCCCCCCCE
T ss_conf 66678899999999------99999983786686069854537736
No 203
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=33.80 E-value=28 Score=15.51 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=14.1
Q ss_pred HHHCCHHHHH--HHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf 2100002336--8875421024554546558983156
Q gi|255764490|r 248 QVDGMDIRAV--KATMDKAVAYCRAHKGPIIIEMLTY 282 (364)
Q Consensus 248 ~vDG~D~~~v--~~~~~~a~~~~r~~~gP~lie~~ty 282 (364)
.+=|--|++- ..+.+-+...-+.+..|++| +.|-
T Consensus 471 P~GG~TPLA~GL~~A~~l~~~~r~~~~~p~~V-llTD 506 (584)
T PRK13406 471 PGGGGTPLAAGLDAALALALSVRRKGQTPTVV-LLTD 506 (584)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE-EECC
T ss_conf 99998859999999999999975579954899-9827
No 204
>pfam06570 DUF1129 Protein of unknown function (DUF1129). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=32.51 E-value=37 Score=14.76 Aligned_cols=28 Identities=14% Similarity=0.022 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 4388899999999989999999999999978987
Q gi|255764490|r 45 SEFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMV 78 (364)
Q Consensus 45 ~~ls~e~l~~~yr~M~~~R~~e~~~~~l~~qg~i 78 (364)
..+|+|+..++...|+ .++.+-|++|+-
T Consensus 20 ~~~s~~~~~~~l~e~~------~~lle~Qk~G~T 47 (206)
T pfam06570 20 TGKSDEEIEEILEEML------PEILEGQKKGIT 47 (206)
T ss_pred CCCCHHHHHHHHHHHH------HHHHHHHHCCCC
T ss_conf 4999999999999999------999988745941
No 205
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.05 E-value=37 Score=14.71 Aligned_cols=45 Identities=18% Similarity=0.361 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf 435777776311112100002336887542102455454655898315
Q gi|255764490|r 234 NFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364)
Q Consensus 234 ~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364)
.++--|.+||-.++-++|.+-..+.+++...+++ -+||+.++..+
T Consensus 22 HV~LtARAfGA~gil~~~e~De~v~esv~dVv~r---wGG~F~v~~~~ 66 (179)
T COG1303 22 HVALTARAFGADGILLDGEEDEKVVESVEDVVER---WGGPFFVKFGV 66 (179)
T ss_pred HHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHH---CCCCEEEEECC
T ss_conf 3335468617754797376437799999999985---49977999722
No 206
>pfam01039 Carboxyl_trans Carboxyl transferase domain. All of the members in this family are biotin dependent carboxylases. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognized types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxoacid as the acceptor molecule of carbon dioxide. All of the members in this family utilize acyl-CoA as the acceptor molecule.
Probab=31.70 E-value=13 Score=17.64 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=32.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 025665430245676544321140111022103434444432321486435777
Q gi|255764490|r 186 CFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRG 239 (364)
Q Consensus 186 ~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra 239 (364)
...|++.-.- .-++++..++||+||++...++.++...++.-.....++..
T Consensus 308 l~~~aa~Kaa---rfi~lcd~~~iPlv~lvDtpGf~~G~~~E~~G~i~~ga~~~ 358 (487)
T pfam01039 308 LFIDSADKAA---RFIRLCDAFNIPLVILVDVPGFLPGTDQEYGGILKHGAKLL 358 (487)
T ss_pred CCHHHHHHHH---HHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCHHHHHHHHH
T ss_conf 3045589999---99998633399769998489887788999746899999999
No 207
>PRK04833 argininosuccinate lyase; Provisional
Probab=31.59 E-value=38 Score=14.66 Aligned_cols=32 Identities=3% Similarity=0.013 Sum_probs=15.7
Q ss_pred HHHHHHHHCCC----CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998789----998999999999999999999
Q gi|255764490|r 313 QVRKRLLHNKW----ASEGDLKEIEMNVRKIINNSV 344 (364)
Q Consensus 313 ~~~~~L~~~g~----~te~e~~~i~~~~~~~v~~a~ 344 (364)
++-+..++.|. ++.++++++.....++|.+++
T Consensus 390 ~lV~~~~~~~~~l~~l~~~~~~~~~~~~~~dv~~~l 425 (455)
T PRK04833 390 EAVVEAIRQGKPLEDLPLAELQKFSAVIGDDVYPIL 425 (455)
T ss_pred HHHHHHHHCCCCHHHCCHHHHHHHCCCCHHHHHHHC
T ss_conf 999999983999354999999976201348999868
No 208
>TIGR00413 rlpA rare lipoprotein A; InterPro: IPR012997 This is a domain found in some bacterial lipoproteins. The function of rare lipoprotein A (RlpA) is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli . This entry contains a conserved region in the middle of RlpA..
Probab=30.78 E-value=22 Score=16.17 Aligned_cols=73 Identities=16% Similarity=0.267 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHHC-CCHH-----HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf 4302456765443211-4011-----102210343444443232148643577777631111210000233688754210
Q gi|255764490|r 192 ANQGQVYESFNIAALW-NLNV-----IYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAV 265 (364)
Q Consensus 192 ~~eG~f~Ealn~A~~~-~lPv-----ifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~ 265 (364)
|+.|+.|....+-+.| .||+ |.=+.||+ || .-+|-|||.- ..-| ++++-.+..+.+
T Consensus 15 TAnGe~yn~~a~TAAHktLP~Nt~vkVtNl~NN~---sv-------iVRINDRGPF---~~~R-----~IDLS~~AA~~i 76 (218)
T TIGR00413 15 TANGEVYNMKALTAAHKTLPFNTVVKVTNLRNNR---SV-------IVRINDRGPF---SDDR-----IIDLSKAAAREI 76 (218)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCC---EE-------EEEECCCCCC---CCCC-----HHHHHHHHHHHC
T ss_conf 4673111046776886427878889999830795---78-------9986268989---8873-----114558999762
Q ss_pred CCCCCCCCCEEEEECCC
Q ss_conf 24554546558983156
Q gi|255764490|r 266 AYCRAHKGPIIIEMLTY 282 (364)
Q Consensus 266 ~~~r~~~gP~lie~~ty 282 (364)
.....|=++|=||+.-.
T Consensus 77 d~~~~Gva~V~l~vl~~ 93 (218)
T TIGR00413 77 DLVSKGVAQVRLEVLEV 93 (218)
T ss_pred CCCCCCCCEEEEEEEEC
T ss_conf 81013731056788721
No 209
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=30.37 E-value=40 Score=14.53 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=21.9
Q ss_pred HHCCHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 8389379999999987899989999999
Q gi|255764490|r 306 SNHDPIEQVRKRLLHNKWASEGDLKEIE 333 (364)
Q Consensus 306 ~~~DPI~~~~~~L~~~g~~te~e~~~i~ 333 (364)
+++|.|..+.+.|+++.-++.+|+++|-
T Consensus 477 e~~~~L~~~a~~Ll~~ETi~~~~~~~l~ 504 (505)
T TIGR01241 477 ENRDELELLAKELLEKETITREEIKELL 504 (505)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 6488999999988876358868999981
No 210
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=30.16 E-value=14 Score=17.36 Aligned_cols=87 Identities=15% Similarity=0.189 Sum_probs=50.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHH-HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 1025665430245676544321140111022-103434444432321486435777776311112100002336887542
Q gi|255764490|r 185 VCFGDGAANQGQVYESFNIAALWNLNVIYVI-ENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDK 263 (364)
Q Consensus 185 ~~~GDGa~~eG~f~Ealn~A~~~~lPvifvv-enN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~ 263 (364)
++++....++-.+-.+..+|...+.+...+. ++.... ..+...+......-+.++.+|-....+-|.|+.+ .
T Consensus 4 V~vd~s~~s~~lir~a~rlA~~~~a~l~vl~V~~~~~~-~~~~~~~~~l~~~~~la~~lga~~~~~~~~d~~~------~ 76 (124)
T cd01987 4 VCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLN-RLSEAERRRLAEALRLAEELGAEVVTLPGDDVAE------A 76 (124)
T ss_pred EEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH------H
T ss_conf 99589850799999999999964998999999559756-5897999999999999998599899994799899------9
Q ss_pred HCCCCCCCCCCEEEEE
Q ss_conf 1024554546558983
Q gi|255764490|r 264 AVAYCRAHKGPIIIEM 279 (364)
Q Consensus 264 a~~~~r~~~gP~lie~ 279 (364)
.++++++.+ -+.|.+
T Consensus 77 I~~~A~~~~-~t~IVl 91 (124)
T cd01987 77 IVEFAREHN-VTQIVV 91 (124)
T ss_pred HHHHHHHCC-CCEEEE
T ss_conf 999999849-989997
No 211
>KOG4259 consensus
Probab=29.90 E-value=29 Score=15.37 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=26.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 43232148643577777631111210000233688754210245545465
Q gi|255764490|r 225 SVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGP 274 (364)
Q Consensus 225 ~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP 274 (364)
..+.+++...++.||+-|||| +|...+..+..++..-++-|..|
T Consensus 147 vae~k~a~e~laaRAkRFgIp------~d~t~i~sadnKas~a~~fG~~~ 190 (260)
T KOG4259 147 VAEEKTAQEKLAARAKRFGIP------VDDTQIKSADNKASSAANFGNKI 190 (260)
T ss_pred CCCCCCCHHHHHHHHHHCCCC------CCHHHHHHHCCCHHHHHHCCCCC
T ss_conf 024432047899889861998------75178774102103556427753
No 212
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III; InterPro: IPR004655 Beta-ketoacyl-acyl carrier protein synthase III (FabH), in general, initiates elongation in type II fatty acid synthase systems found in bacteria and plants. It is responsible for producing the multitude of fatty acid structures found in bacterial membranes . The two members of this subfamily from Bacillus subtilis differ from each other, and from FabH from Escherichia coli, in acyl group specificity. Active site residues include Cys112, His244 and Asn274 of Escherichia coli FabH. Cys-112 is the site of acyl group attachment. ; GO: 0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity, 0006633 fatty acid biosynthetic process.
Probab=29.62 E-value=22 Score=16.23 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=17.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0011233444433102566543
Q gi|255764490|r 172 FANKYRRSDKICVVCFGDGAAN 193 (364)
Q Consensus 172 ~a~k~~~~~~v~v~~~GDGa~~ 193 (364)
++....-+||=++..|||||..
T Consensus 143 lSs~~D~~DR~TcvLFGDGAgA 164 (329)
T TIGR00747 143 LSSTLDWTDRGTCVLFGDGAGA 164 (329)
T ss_pred CCCCCCCCCCCCEEEECCCCEE
T ss_conf 0553674668757996067226
No 213
>TIGR02065 ECX1 exosome complex exonuclease 1; InterPro: IPR011807 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function. An active PH domain uses inorganic phosphate as a nucleophile, adding it across the phosphodiester bond between the end two nucleotides in order to release ribonucleoside 5'-diphosphate (rNDP) from the 3' end of the RNA substrate. PH domains can be found in bacterial/organelle RNases and PNPases (polynucleotide phosphorylases) , as well as in archaeal and eukaryotic RNA exosomes , , the later acting as nano-compartments for the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA). Bacterial/organelle PNPases share a common barrel structure with RNA exosomes, consisting of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber . Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel , . This entry represents a family of archaeal proteins that are orthologous to the eukaryotic exosome protein Rrp41. It is somewhat more distantly related to the bacterial protein ribonuclease PH. An exosome-like complex has been demonstrated experimentally for the Archaea in Sulfolobus solfataricus, so members of this family are designated exosome complex exonuclease 1, after usage in SwissProt .; GO: 0016896 exoribonuclease activity producing 5'-phosphomonoesters, 0000178 exosome (RNase complex).
Probab=28.24 E-value=30 Score=15.33 Aligned_cols=28 Identities=14% Similarity=0.302 Sum_probs=17.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCHHHH
Q ss_conf 10256654302456765443211401110
Q gi|255764490|r 185 VCFGDGAANQGQVYESFNIAALWNLNVIY 213 (364)
Q Consensus 185 ~~~GDGa~~eG~f~Ealn~A~~~~lPvif 213 (364)
-+-=||..+.++|.+|+++|. ..+-.|+
T Consensus 193 LLQldG~~T~dEF~~A~~lA~-~g~~~v~ 220 (231)
T TIGR02065 193 LLQLDGDLTPDEFRQALDLAV-KGIKRVY 220 (231)
T ss_pred EEEECCCCCHHHHHHHHHHHH-HHHHHHH
T ss_conf 997479868678999999999-9988999
No 214
>PHA00144 major head protein
Probab=28.17 E-value=32 Score=15.11 Aligned_cols=11 Identities=18% Similarity=0.368 Sum_probs=5.2
Q ss_pred CHHHHHHHHHH
Q ss_conf 43577777631
Q gi|255764490|r 234 NFSKRGVSFNI 244 (364)
Q Consensus 234 ~i~~ra~~~gi 244 (364)
++-..+++|+|
T Consensus 256 Dv~~La~AFNm 266 (438)
T PHA00144 256 DVDVLAKAFNM 266 (438)
T ss_pred CHHHHHHHHCC
T ss_conf 48899987585
No 215
>pfam10302 DUF2407 Putative membrane protein (DUF2407). This is a family of proteins found in fungi. The function is not known. There is a characteristic GFDRL sequence motif.
Probab=28.16 E-value=35 Score=14.89 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=32.3
Q ss_pred CCCCCCCCCHH--HHHHHHHHHCC----CCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 77220589878--99999996238----9989994300689999974212222
Q gi|255764490|r 79 GGFCHLCIGQE--AVIVGMKMSLT----EGDQMITAYREHGHILACGVDASKI 125 (364)
Q Consensus 79 ~g~~~~~~GqE--a~~vg~~~al~----~~D~~~~~yR~~~~~l~~G~~~~~~ 125 (364)
+-|+|.++|.| +.+.+...++. +.+-..|.-|+.--+|+.|.++.++
T Consensus 83 r~YIHCsIGd~Lt~eeLa~E~~~~~~~~~~~sTtp~~rGFDRLlsaGFs~~EV 135 (252)
T pfam10302 83 RIYIHCSIGDELTAEELAAEAALDDDGPQASSTTPQPRGFDRLLSAGFSPAEV 135 (252)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHH
T ss_conf 27999632762698887424401567888777888874487898758999999
No 216
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=27.84 E-value=22 Score=16.15 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=24.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCH--HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 56654302456765443211401--11022103434444432321486435777776311
Q gi|255764490|r 188 GDGAANQGQVYESFNIAALWNLN--VIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIP 245 (364)
Q Consensus 188 GDGa~~eG~f~Ealn~A~~~~lP--vifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~ 245 (364)
.-|.++.+++++++...--.+-| ++.-|.+ .|. +|.+.. .-..+-+.++.|+++
T Consensus 153 STGma~~~ei~~av~~~r~~g~~~i~LLhC~s-~YP--ap~ed~-nL~~i~~l~~~Fn~~ 208 (347)
T COG2089 153 STGMATIEEIEEAVAILRENGNPDIALLHCTS-AYP--APFEDV-NLKAIPKLAEAFNAI 208 (347)
T ss_pred ECCCCCHHHHHHHHHHHHHCCCCCEEEEEECC-CCC--CCHHHH-HHHHHHHHHHHHCCC
T ss_conf 74664077799999999966998769998357-899--977773-488799999996876
No 217
>pfam03249 TSA Type specific antigen. There are several antigenic variants in Rickettsia tsutsugamushi, and a type-specific antigen (TSA) of 56-kilodaltons located on the rickettsial surface is responsible for the variation. TSA proteins are probably integral membrane proteins.
Probab=27.63 E-value=31 Score=15.23 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8789999999623899899943006899999742122223432101
Q gi|255764490|r 87 GQEAVIVGMKMSLTEGDQMITAYREHGHILACGVDASKIMAELTGR 132 (364)
Q Consensus 87 GqEa~~vg~~~al~~~D~~~~~yR~~~~~l~~G~~~~~~~ae~~gk 132 (364)
-|||++++...+|+..|-+.--|+|.- -|.|-.-.++-|-++-..
T Consensus 347 aqea~aaaAvR~LN~n~qI~qLYkDLv-KLqRhagikKameklaaq 391 (524)
T pfam03249 347 AQEAAAAAAVRLLNGNEQIIQLYKDLV-KLQRHAGIKKAMEKLAAQ 391 (524)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_conf 999889999987558478999999999-998867599999998643
No 218
>pfam05186 Dpy-30 Dpy-30 motif. This motif is found in a wide variety of domain contexts. It is found in the Dpy-30 proteins hence the motifs name. It is about 40 residues long and is probably formed of two alpha-helices. It may be a dimerization motif analogous to pfam02197 (Bateman A pers obs).
Probab=26.21 E-value=47 Score=14.08 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=16.4
Q ss_pred HHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 99998983893799999999878
Q gi|255764490|r 300 EINEMRSNHDPIEQVRKRLLHNK 322 (364)
Q Consensus 300 Ei~~~~~~~DPI~~~~~~L~~~g 322 (364)
|+..-|- .|||..+.+||++++
T Consensus 20 el~k~rP-~dPi~~La~~Llk~~ 41 (42)
T pfam05186 20 ELAKERP-EDPIEFLAEYLLKNR 41 (42)
T ss_pred HHHHHCC-CCHHHHHHHHHHHCC
T ss_conf 9998889-987999999997717
No 219
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=24.96 E-value=50 Score=13.92 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=24.1
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCH-------HHHHH--------HCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 56654302456765443211401-------11022--------103434444432321486435777
Q gi|255764490|r 188 GDGAANQGQVYESFNIAALWNLN-------VIYVI--------ENNQYAMGTSVSRASAQTNFSKRG 239 (364)
Q Consensus 188 GDGa~~eG~f~Ealn~A~~~~lP-------vifvv--------enN~~aist~~~~~~~~~~i~~ra 239 (364)
-|+.++-....|.+..++.--+. +||.+ --+.|+-+.+.=.|-.+++..+..
T Consensus 227 ldavs~Rdf~le~l~~~a~~~~~LSRlaedlI~wss~EfgfI~l~D~~sTGSSIMPQKKNPD~~ELi 293 (459)
T COG0165 227 LDAVSDRDFILEFLSAAALIMVHLSRLAEDLILWSSPEFGFIELPDEFSTGSSIMPQKKNPDVLELI 293 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 4566527999999999999999999999999987054676276785555566668888898689998
No 220
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=24.89 E-value=50 Score=13.91 Aligned_cols=41 Identities=27% Similarity=0.332 Sum_probs=24.6
Q ss_pred HHHHHCCHHHHHHH-HHHHHCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 11210000233688-754210245545465589831566887
Q gi|255764490|r 246 GMQVDGMDIRAVKA-TMDKAVAYCRAHKGPIIIEMLTYRYRG 286 (364)
Q Consensus 246 ~~~vDG~D~~~v~~-~~~~a~~~~r~~~gP~lie~~tyR~~g 286 (364)
++++|+.++-.-.. -+++....|++..-|.+||..||-...
T Consensus 133 y~~~D~~e~neqk~a~ierigsec~aedi~f~lE~ltyd~~~ 174 (306)
T COG3684 133 YYRSDEDEINEQKLAYIERIGSECHAEDLPFFLEPLTYDPRI 174 (306)
T ss_pred EECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 974896177699999999987775006875167653038777
No 221
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=24.22 E-value=41 Score=14.47 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=11.8
Q ss_pred CCCEEEEECCCCCCCCCCCCC-CCCCCHHHHHH
Q ss_conf 465589831566887666787-66789999999
Q gi|255764490|r 272 KGPIIIEMLTYRYRGHSMSDP-ANYRTREEINE 303 (364)
Q Consensus 272 ~gP~lie~~tyR~~gHs~~D~-~~YR~~~Ei~~ 303 (364)
+-|+++-+.- .|...... ..|++++++.+
T Consensus 72 g~Pt~~f~~~---~g~~~~~~l~G~~~~~~fl~ 101 (104)
T cd02953 72 GPPTYLFYGP---GGEPEPLRLPGFLTADEFLE 101 (104)
T ss_pred CCCEEEEECC---CCCCCCCEEECCCCHHHHHH
T ss_conf 5677999879---99867626123048999999
No 222
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=24.14 E-value=51 Score=13.82 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 999999999999978987772205898789999999623899899943
Q gi|255764490|r 61 LIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITA 108 (364)
Q Consensus 61 ~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~ 108 (364)
+...||+|+..| +|=+ +-...+.||-|+-.++-..++++|.+.++
T Consensus 63 T~~vlE~RiAaL--EGG~-aa~a~aSG~AA~~~ai~~la~aGD~iVss 107 (426)
T COG2873 63 TTDVLEERIAAL--EGGV-AALAVASGQAAITYAILNLAGAGDNIVSS 107 (426)
T ss_pred HHHHHHHHHHHH--HCCH-HHHHHCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 089999999986--1454-11333133589999999864588706751
No 223
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=24.13 E-value=29 Score=15.45 Aligned_cols=88 Identities=11% Similarity=0.174 Sum_probs=48.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 10256654302456765443211401110221034344444323214864357777763111121000023368875421
Q gi|255764490|r 185 VCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKA 264 (364)
Q Consensus 185 ~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~~vDG~D~~~v~~~~~~a 264 (364)
++-+||-.....++++|..+...++|++.-||++...+.....+......+.+.+.-| ++.+| .-.+=+.+++
T Consensus 103 tns~~Gv~~~~~~~~~~e~~~~~~~~l~~H~E~~~~~~~~~~~E~~~i~~~~~l~~~~--~~l~i-----hi~HIST~~~ 175 (335)
T cd01294 103 TNSQGGVTDLEKIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREAKFIPVLEPLAQRF--PKLKI-----VLEHITTADA 175 (335)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCEE-----EEEECCCHHH
T ss_conf 0465576558999999999986699677747658875660367887678789999868--88769-----9984385999
Q ss_pred CCCCCCCCCCEEEEE
Q ss_conf 024554546558983
Q gi|255764490|r 265 VAYCRAHKGPIIIEM 279 (364)
Q Consensus 265 ~~~~r~~~gP~lie~ 279 (364)
++.+|+.+.++--|+
T Consensus 176 ve~ik~~~~~VtaEV 190 (335)
T cd01294 176 VEYVKSCNENVAATI 190 (335)
T ss_pred HHHHHHCCCCCEEEE
T ss_conf 999995899704887
No 224
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase; InterPro: IPR006234 These sequences represent O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis..
Probab=23.77 E-value=52 Score=13.78 Aligned_cols=137 Identities=14% Similarity=0.154 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCH-HHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9999999999999789877722058987899999996238998999430068-999997421222234321012344345
Q gi|255764490|r 61 LIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITAYREH-GHILACGVDASKIMAELTGRQGGISKG 139 (364)
Q Consensus 61 ~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~-~~~l~~G~~~~~~~ae~~gk~~g~~~G 139 (364)
+.+.||+|+..|-..-. .+ -.+.|-=||++++...++-+|+|... |+. |-++. +..-+..=||=++.+..+
T Consensus 55 Tv~~FE~Rla~LEGAe~--A~-AtAsGMsAi~A~l~~L~~AGDhvv~s-RSlFGst~~----~~~~~l~rFGv~v~fv~~ 126 (386)
T TIGR01325 55 TVKVFEERLALLEGAER--AV-ATASGMSAILAALMALLSAGDHVVAS-RSLFGSTVV----LVSEILPRFGVEVSFVDA 126 (386)
T ss_pred CHHHHHHHHHHHHCHHH--HH-HHHHHHHHHHHHHHHHHCCCCEEEEE-ECHHCCEEE----EEECCCCCCCEEEEECCC
T ss_conf 15788999997406037--88-64213899999999986168779985-100032002----101253435406751786
Q ss_pred CCCC-----CCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCC-------------------------C-CCCCC
Q ss_conf 5677-----321112212367667466--------7674325431001-------------------------1-23344
Q gi|255764490|r 140 KGGS-----MHMFSTKNGFYGGHGIVG--------AQVSLGTGIAFAN-------------------------K-YRRSD 180 (364)
Q Consensus 140 r~gs-----~H~~~~~~~~~~~~~~vg--------~~~p~A~G~A~a~-------------------------k-~~~~~ 180 (364)
-+-+ |-...+-.=+.+.|-|++ +-+.||+|+-+.. | +.|..
T Consensus 127 ~Dl~~WeaA~~~nTkl~f~EtPSNPl~e~~Di~AlaELAHA~GA~lvvDN~f~tP~~qqPL~lGaDvvv~SATK~IDGqG 206 (386)
T TIGR01325 127 TDLKAWEAALKPNTKLVFVETPSNPLAELVDIAALAELAHAVGALLVVDNVFATPVLQQPLKLGADVVVYSATKHIDGQG 206 (386)
T ss_pred CCHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCCCEEEEECCCEEECCCC
T ss_conf 78788898569995078863688704679999999998873341002114564100138864564079864620113875
Q ss_pred CC-CCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 44-33102566543024567654432
Q gi|255764490|r 181 KI-CVVCFGDGAANQGQVYESFNIAA 205 (364)
Q Consensus 181 ~v-~v~~~GDGa~~eG~f~Ealn~A~ 205 (364)
|| -=+..|++...++-+...||.++
T Consensus 207 RvlGGv~~G~~e~~~~~v~~~lr~~G 232 (386)
T TIGR01325 207 RVLGGVILGSEELMEEFVAKFLRHTG 232 (386)
T ss_pred CEECCEEECCHHHHHHHHHHHHHCCC
T ss_conf 40121453607775348999974257
No 225
>TIGR01111 mtrA tetrahydromethanopterin S-methyltransferase, subunit A; InterPro: IPR005778 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane.
Probab=23.30 E-value=48 Score=14.00 Aligned_cols=27 Identities=19% Similarity=0.076 Sum_probs=19.0
Q ss_pred CCCCC--CCCCCCCCCCCCCCCCCC---CCCC
Q ss_conf 11221--236766746676743254---3100
Q gi|255764490|r 147 FSTKN--GFYGGHGIVGAQVSLGTG---IAFA 173 (364)
Q Consensus 147 ~~~~~--~~~~~~~~vg~~~p~A~G---~A~a 173 (364)
+|++. .+.+..|++-.|.++.+| +|.|
T Consensus 21 Gdpe~~V~vvTlGSH~~~~~~~~AGedkaAia 52 (246)
T TIGR01111 21 GDPESPVLVVTLGSHIEEQIILDAGEDKAAIA 52 (246)
T ss_pred CCCCCCCEEEECCCCCCCCCHHHCCCCCEEEE
T ss_conf 48788726887345676650322289712661
No 226
>pfam00782 DSPc Dual specificity phosphatase, catalytic domain. Ser/Thr and Tyr protein phosphatases. The enzyme's tertiary fold is highly similar to that of tyrosine-specific phosphatases, except for a "recognition" region.
Probab=22.06 E-value=36 Score=14.79 Aligned_cols=32 Identities=6% Similarity=0.083 Sum_probs=20.8
Q ss_pred HCCHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf 00002336887542102455454655898315
Q gi|255764490|r 250 DGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 (364)
Q Consensus 250 DG~D~~~v~~~~~~a~~~~r~~~gP~lie~~t 281 (364)
++.|+..-...+...++.++..++++||||..
T Consensus 49 ~~~~i~~~~~~~~~fI~~~~~~g~~VLVHC~~ 80 (131)
T pfam00782 49 HETNISKYLPEAVEFIDDAIQKGGKVLVHCQA 80 (131)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 99877999999999999998649969999999
No 227
>pfam01071 GARS_A Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam02786).
Probab=21.75 E-value=57 Score=13.55 Aligned_cols=19 Identities=21% Similarity=0.504 Sum_probs=14.9
Q ss_pred CCCCCCCCCCEEEEECCCCC
Q ss_conf 02455454655898315668
Q gi|255764490|r 265 VAYCRAHKGPIIIEMLTYRY 284 (364)
Q Consensus 265 ~~~~r~~~gP~lie~~tyR~ 284 (364)
.+.+....||.|||+++ |+
T Consensus 170 ~e~~lt~~GP~vIEiN~-Rl 188 (193)
T pfam01071 170 AGLMLTKDGPKVLEFNC-RF 188 (193)
T ss_pred EEEEEECCCEEEEEEEC-CC
T ss_conf 99999899579999939-99
No 228
>PRK05968 hypothetical protein; Provisional
Probab=21.74 E-value=57 Score=13.52 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 9999999999999978987772205898789999999623899899943
Q gi|255764490|r 60 LLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITA 108 (364)
Q Consensus 60 ~~~R~~e~~~~~l~~qg~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~ 108 (364)
=+.+.||+++..|.. |. ... -.+.|+-|+...+...++++|.+...
T Consensus 63 PT~~~lE~~la~LEg-g~-~a~-~~sSGmaAis~~l~~ll~~Gd~iv~~ 108 (389)
T PRK05968 63 PTVRAFEEMLAKLEG-AE-DAR-GFASGMAAISSTVLSFVEPGDRIVAV 108 (389)
T ss_pred HHHHHHHHHHHHHHC-CC-EEE-EECCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 669999999999829-96-388-85488999999999960899989858
No 229
>TIGR01029 rpsG_bact ribosomal protein S7; InterPro: IPR005717 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This model describes the bacterial and organellar branch of the ribosomal protein S7 family (includes prokaroytic S7 and eukaryotic S5).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=21.70 E-value=51 Score=13.85 Aligned_cols=75 Identities=20% Similarity=0.366 Sum_probs=49.1
Q ss_pred CC-HHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCHH--
Q ss_conf 00-023368875421024554546558983156688766678766789999999898389379999999987899989--
Q gi|255764490|r 251 GM-DIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEG-- 327 (364)
Q Consensus 251 G~-D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gHs~~D~~~YR~~~Ei~~~~~~~DPI~~~~~~L~~~g~~te~-- 327 (364)
|. ||++| +..|++.++ | +||++.-|-+| ..|.-|-|+..-| +--|.. +||++.- ..-
T Consensus 53 ~~~~pl~v---f~~AlenVk----P-~~EVk~RRVGG------aTYQVP~EV~~~R--~~aLA~--RWi~~aA--rkR~~ 112 (159)
T TIGR01029 53 GEEDPLEV---FEKALENVK----P-LLEVKSRRVGG------ATYQVPVEVREER--REALAI--RWIVEAA--RKRRM 112 (159)
T ss_pred CCCCHHHH---HHHHHHCCC----C-EEEEEEEEECC------CCCCCCEEECCCH--HHHHHH--HHHHHHH--HHCCC
T ss_conf 88416889---999986278----7-24676456548------6650222557613--366799--9999987--42368
Q ss_pred --HHHHHHHHHHHHHHHHHH
Q ss_conf --999999999999999999
Q gi|255764490|r 328 --DLKEIEMNVRKIINNSVE 345 (364)
Q Consensus 328 --e~~~i~~~~~~~v~~a~~ 345 (364)
--..|....-.||.+|+.
T Consensus 113 G~~~~~M~~~La~El~dA~~ 132 (159)
T TIGR01029 113 GKSGKTMAERLANELLDAAN 132 (159)
T ss_pred CCCCCCHHHHHHHHHHHHHC
T ss_conf 88997888899999999970
No 230
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=21.63 E-value=57 Score=13.51 Aligned_cols=23 Identities=9% Similarity=-0.013 Sum_probs=10.0
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 43444443232148643577777
Q gi|255764490|r 219 QYAMGTSVSRASAQTNFSKRGVS 241 (364)
Q Consensus 219 ~~aist~~~~~~~~~~i~~ra~~ 241 (364)
.|+-+.+.=.|-.++++.+...|
T Consensus 272 ~~sTGSSIMPQKKNPDv~ELiRG 294 (614)
T PRK12308 272 TVTSGSSLMPQKKNPDALELIRG 294 (614)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 55445555777779868999887
No 231
>PRK13683 hypothetical protein; Provisional
Probab=21.00 E-value=34 Score=14.93 Aligned_cols=42 Identities=12% Similarity=0.216 Sum_probs=29.6
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 6311112100002336887542102455454655898315668876
Q gi|255764490|r 242 FNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGH 287 (364)
Q Consensus 242 ~gi~~~~vDG~D~~~v~~~~~~a~~~~r~~~gP~lie~~tyR~~gH 287 (364)
|-+...+=+-.|..++|+.++.|++. +.|.|||+.|-+-.+-
T Consensus 13 ~PiSVQrKe~edA~~lYq~I~~am~~----g~p~llELtCek~~dK 54 (88)
T PRK13683 13 MPVSVQRKEAEDAEALYQQIRQAMRS----GNPRLLELTCEKVEDK 54 (88)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHC----CCCCEEEEEECCCCCE
T ss_conf 62388852588999999999999866----9985699884375781
No 232
>KOG2672 consensus
Probab=20.72 E-value=60 Score=13.39 Aligned_cols=131 Identities=20% Similarity=0.266 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 54310011233444433102566543024567654432114011102210343444443232148643577777631111
Q gi|255764490|r 168 TGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGM 247 (364)
Q Consensus 168 ~G~A~a~k~~~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~aist~~~~~~~~~~i~~ra~~~gi~~~ 247 (364)
.|-.|+-+-++.-..+|..+||-++- .+-|.++..- .- -.|.....+ .+-++-.+.+|+.++
T Consensus 98 iGECWgG~d~~~ATATIMlmGDTCTR------GCRFCsVKTs---------R~--PpPlDp~EP-eNTAeAIasWgl~Yi 159 (360)
T KOG2672 98 IGECWGGGDKSTATATIMLMGDTCTR------GCRFCSVKTS---------RN--PPPLDPNEP-ENTAEAIASWGLDYI 159 (360)
T ss_pred HHHCCCCCCCCCEEEEEEEECCCCCC------CCCEEEEECC---------CC--CCCCCCCCC-CCHHHHHHHCCCCEE
T ss_conf 14124889875236898863474346------7520121037---------88--967799986-448999997188869
Q ss_pred ---HHHCCHHHHHH-HHHHHHCCCCCCCCCCEEEEECCCCCCCC---------CCCCCC--CCCCHHHHHHHHHHCCHHH
Q ss_conf ---21000023368-87542102455454655898315668876---------667876--6789999999898389379
Q gi|255764490|r 248 ---QVDGMDIRAVK-ATMDKAVAYCRAHKGPIIIEMLTYRYRGH---------SMSDPA--NYRTREEINEMRSNHDPIE 312 (364)
Q Consensus 248 ---~vDG~D~~~v~-~~~~~a~~~~r~~~gP~lie~~tyR~~gH---------s~~D~~--~YR~~~Ei~~~~~~~DPI~ 312 (364)
.||-.|.-+-= +-+++.+.++....--+|||+.|--+.|- |+-|.- +--+-+|+.-| -|||-.
T Consensus 160 VlTSVDRDDlpDgGa~HiAkTVq~iK~k~p~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETVe~Ltp~--VRD~RA 237 (360)
T KOG2672 160 VLTSVDRDDLPDGGANHIAKTVQKIKEKAPEILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETVEELTPF--VRDPRA 237 (360)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCEECCHHHHHHCCHH--HCCCCC
T ss_conf 997114564767522789999999985284232132475545734799999853740000111408760233--318540
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|255764490|r 313 QVRKRL 318 (364)
Q Consensus 313 ~~~~~L 318 (364)
.|++.|
T Consensus 238 ~yrQSL 243 (360)
T KOG2672 238 NYRQSL 243 (360)
T ss_pred CHHHHH
T ss_conf 167769
No 233
>PRK07668 hypothetical protein; Validated
Probab=20.69 E-value=60 Score=13.39 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=14.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCHHHHHH-HCCCCCC
Q ss_conf 25665430245676544321140111022-1034344
Q gi|255764490|r 187 FGDGAANQGQVYESFNIAALWNLNVIYVI-ENNQYAM 222 (364)
Q Consensus 187 ~GDGa~~eG~f~Ealn~A~~~~lPvifvv-enN~~ai 222 (364)
+++....-...|- .+..+-+.++++. -|..|+.
T Consensus 132 fksk~~~~~~i~~---~~ii~~~liv~i~~l~~~Y~t 165 (248)
T PRK07668 132 FKSKTKEFGIIYV---VAIIPMLLIVAIMFLNKWYGT 165 (248)
T ss_pred CCCCCEEHHHHHH---HHHHHHHHHHHHHHHHCCCCC
T ss_conf 0356520189999---999999999999999714899
No 234
>PRK08417 dihydroorotase; Provisional
Probab=20.07 E-value=62 Score=13.30 Aligned_cols=36 Identities=8% Similarity=0.200 Sum_probs=28.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCC
Q ss_conf 102566543024567654432114011102210343
Q gi|255764490|r 185 VCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQY 220 (364)
Q Consensus 185 ~~~GDGa~~eG~f~Ealn~A~~~~lPvifvvenN~~ 220 (364)
.+..+...+.+.+...+..+...++|+++-|||+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~h~ed~~l 155 (387)
T PRK08417 120 AIYLDSSLDANLLKRIAQYAQMLDVPIFCRCEDSSF 155 (387)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHH
T ss_conf 996588898699999999888629779990699899
Done!