RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|255764490|ref|YP_003065085.2| dehydrogenase, E1 component
[Candidatus Liberibacter asiaticus str. psy62]
         (364 letters)



>gnl|CDD|163176 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component,
           alpha subunit.  Members of this protein family are the
           alpha subunit of the E1 component of pyruvate
           dehydrogenase (PDH). This model represents one branch of
           a larger family that E1-alpha proteins from
           2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
           another PDH clade, etc.
          Length = 315

 Score =  542 bits (1399), Expect = e-155
 Identities = 196/315 (62%), Positives = 237/315 (75%), Gaps = 1/315 (0%)

Query: 49  KEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITA 108
           KE+ L  YR MLLIRRFEEKAGQLYGMG +GGFCHL IGQEAV VG+  +L   D +IT+
Sbjct: 1   KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITS 60

Query: 109 YREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGT 168
           YR+HGH LA GV   ++MAELTGR  G SKGKGGSMHMF  +  FYGGHGIVGAQV L T
Sbjct: 61  YRDHGHALARGVPPKEVMAELTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLAT 120

Query: 169 GIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSR 228
           G+AFANKYR +D +    FGDGAANQGQ YESFN+AALW L VI+VIENN YAMGTSV R
Sbjct: 121 GLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMGTSVER 180

Query: 229 ASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHS 288
           +S+ T+  KRG SF IPG +VDGMD+ AV+    +AV   R+ KGPI++EM TYR+RGHS
Sbjct: 181 SSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHS 240

Query: 289 MSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQ 348
           MSDPA YR++EE+ E R   DPIE+++ RL+    ASE +LKEI+  VR  +  +VEFA+
Sbjct: 241 MSDPAKYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFAE 299

Query: 349 SDKEPDPAELYSDIL 363
           +  EP   ELY+D+ 
Sbjct: 300 NSPEPPVEELYTDVY 314


>gnl|CDD|177910 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit
           alpha.
          Length = 362

 Score =  383 bits (986), Expect = e-107
 Identities = 158/318 (49%), Positives = 219/318 (68%), Gaps = 4/318 (1%)

Query: 46  EFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQM 105
           E +K++ +  +R M L+RR E  A  LY   ++ GFCHL  GQEAV VGM+ ++T+ D +
Sbjct: 26  ETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAI 85

Query: 106 ITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVS 165
           ITAYR+H   L  G    ++ AEL GR+ G S+GKGGSMH +     FYGGHGIVGAQV 
Sbjct: 86  ITAYRDHCTHLGRGGTVLEVFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVP 145

Query: 166 LGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTS 225
           LG G+AFA KY + + +    +GDGAANQGQ++E+ NIAALW+L VI+V ENN Y MGT+
Sbjct: 146 LGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNHYGMGTA 205

Query: 226 VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYR 285
             RA+    + KRG    +PG++VDGMD+ AVK     A  +  +  GPI++EM TYRY 
Sbjct: 206 EWRAAKSPAYYKRGDY--VPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRYH 262

Query: 286 GHSMSDP-ANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSV 344
           GHSMSDP + YRTR+EI+ +R   DPIE+VRK LL ++ A+E +LK+IE  +RK ++++V
Sbjct: 263 GHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDDAV 322

Query: 345 EFAQSDKEPDPAELYSDI 362
             A+    PDP+EL++++
Sbjct: 323 AKAKESPMPDPSELFTNV 340


>gnl|CDD|178002 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring).
          Length = 433

 Score =  273 bits (700), Expect = 4e-74
 Identities = 125/322 (38%), Positives = 192/322 (59%), Gaps = 8/322 (2%)

Query: 49  KEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITA 108
           +E+ L  Y  M+L R FE+   Q+Y  G + GF HL  GQEAV  G    L + D +++ 
Sbjct: 85  REEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVST 144

Query: 109 YREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGT 168
           YR+H H L+ GV A  +M+EL G+  G  +G+GGSMHMFS ++   GG   +G  + + T
Sbjct: 145 YRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVAT 204

Query: 169 GIAFANKYRRS-------DKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYA 221
           G AF++KYRR        D + +  FGDG  N GQ +E  N+AALW L +++V+ENN +A
Sbjct: 205 GAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA 264

Query: 222 MGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281
           +G S  RA++     K+G +F +PG+ VDGMD+  V+    +A+   R  +GP ++E  T
Sbjct: 265 IGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 324

Query: 282 YRYRGHSMSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIIN 341
           YR+RGHS++DP   R   E     +  DPI  ++K L+ N  A+E +LK IE  + +++ 
Sbjct: 325 YRFRGHSLADPDELRDPAEKAHYAA-RDPIAALKKYLIENGLATEAELKAIEKKIDEVVE 383

Query: 342 NSVEFAQSDKEPDPAELYSDIL 363
           ++VEFA +   P  ++L  ++ 
Sbjct: 384 DAVEFADASPLPPRSQLLENVF 405


>gnl|CDD|132225 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component,
           alpha subunit.  Members of this protein family are the
           alpha subunit of the E1 component of pyruvate
           dehydrogenase (PDH). This model represents one branch of
           a larger family that E1-alpha proteins from
           2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
           another PDH clade, etc.
          Length = 341

 Score =  244 bits (625), Expect = 3e-65
 Identities = 99/313 (31%), Positives = 163/313 (52%), Gaps = 12/313 (3%)

Query: 48  NKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMIT 107
           + E+ +  YR M+L RRF+ KA  L   G +G +    +GQEA  VG  ++L + D +  
Sbjct: 22  SDEELVELYRDMVLTRRFDTKALALQRQGRLGTYA-PNLGQEAAQVGSALALRKDDWVFP 80

Query: 108 AYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLG 167
           +YR+H  +LA GV   +I+    G + G    +G ++   +           +G Q    
Sbjct: 81  SYRDHAAMLARGVPLVEILLYWRGDERGSWDPEGVNILPPNI---------PIGTQYLHA 131

Query: 168 TGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVS 227
            G+A+A K R  D + V  FGDG  ++G  YE+ N A ++   V++ ++NNQ+A+    S
Sbjct: 132 AGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRS 191

Query: 228 RASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGH 287
           + +A    +++ +++ IPG+QVDG D+ AV A   +AV   R+  GP +IE +TYR   H
Sbjct: 192 KQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPH 251

Query: 288 SMSD-PANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEF 346
           + +D P  YRT+EE  E R   DPI ++RK L       E   + +E      +  +V  
Sbjct: 252 TTADDPTRYRTKEEEEEWRK-KDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAE 310

Query: 347 AQSDKEPDPAELY 359
           A +   P   +++
Sbjct: 311 ALALPPPPVDDIF 323


>gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component. 
           The E1 ortholog from Corynebacterium glutamicum is
           unusual in having an N-terminal extension that resembles
           the dihydrolipoamide succinyltransferase (E2) component
           of 2-oxoglutarate dehydrogenase.
          Length = 929

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 4/173 (2%)

Query: 188 GDGA-ANQGQVYESFNIAALWNLNV---IYVIENNQYAMGTSVSRASAQTNFSKRGVSFN 243
           GD A A QG V E+ N++ L   +V   I++I NNQ    T+   A +    S       
Sbjct: 351 GDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKMIQ 410

Query: 244 IPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREEINE 303
            P   V+  D  AV      AV Y    K  + I+++ YR  GH+ +D  +        +
Sbjct: 411 APIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQPLMYQK 470

Query: 304 MRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPA 356
           ++ +  P +    +L+    A+E D+ E+    R  +  +     S +E + A
Sbjct: 471 IKKHPTPRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWREMNTA 523


>gnl|CDD|183391 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
          Length = 1228

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 26/142 (18%)

Query: 188 GDGA-ANQGQVYESFNIAALWNLNV---IYVIENNQYAMGTS--VSRASA-QTNFSKRGV 240
           GD A A QG V E+ N++ L        I+++ NNQ    T+   SR+S   T+ +K   
Sbjct: 655 GDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVAK--- 711

Query: 241 SFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGH------SMSDPAN 294
               P   V+G D  AV      A  Y +     ++I+++ YR RGH      SM+ P  
Sbjct: 712 MIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLM 771

Query: 295 YRTREEINEMRSNHDPIEQVRK 316
           Y     I+  RS       VRK
Sbjct: 772 YDL---IDAKRS-------VRK 783



 Score = 27.6 bits (62), Expect = 5.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 104 QMITAYREHGHILA 117
           ++I AYR  GH++A
Sbjct: 391 ELIHAYRVRGHLMA 404



 Score = 27.2 bits (61), Expect = 6.9
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 3/26 (11%)

Query: 276 IIEML-TYRYRGHSMSD--PANYRTR 298
           ++E++  YR RGH M+D  P  YR R
Sbjct: 389 VMELIHAYRVRGHLMADTDPLEYRQR 414


>gnl|CDD|177878 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate synthase.
          Length = 641

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 42/196 (21%)

Query: 136 ISKGKGGSMHMFSTKNGFYG------------GHGIVGAQVSLGTGIAFANKYRRSDKIC 183
           I  G+ G M      NG  G            G G     +S G G+A     +  +   
Sbjct: 143 ILTGRRGKMKTIRQTNGLSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSV 202

Query: 184 VVCFGDGAANQGQVYESFNIAALWNLNVIYVI-ENNQYAMGTS----------------- 225
           V   GDGA   GQ YE+ N A   + N+I ++ +N Q ++ T+                 
Sbjct: 203 VSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALS 262

Query: 226 -------VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIE 278
                  + R ++ T F + G  +  P   VDG +I  + + ++   +      GP++I 
Sbjct: 263 RLQSNCGMIRETSSTLFEELGFHYVGP---VDGHNIDDLVSILETLKS--TKTIGPVLIH 317

Query: 279 MLTYRYRGHSMSDPAN 294
           ++T + RG+  ++ A+
Sbjct: 318 VVTEKGRGYPYAERAD 333


>gnl|CDD|178194 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate synthase.
          Length = 677

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 12/96 (12%)

Query: 136 ISKGKGGSMHMFSTKNGFYG------------GHGIVGAQVSLGTGIAFANKYRRSDKIC 183
           I  G+   MH     NG  G            G G     +S G G+A     +      
Sbjct: 110 ILTGRRDKMHTMRQTNGLSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNV 169

Query: 184 VVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ 219
           V   GDGA   GQ YE+ N A   + ++I ++ +N+
Sbjct: 170 VAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 205


>gnl|CDD|181824 PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component;
           Reviewed.
          Length = 924

 Score = 40.1 bits (95), Expect = 0.001
 Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 24/182 (13%)

Query: 188 GDGA-ANQGQVYESFNIAALWNLNV---IYVIENNQYAMGTSVSRA-SAQ--TNFSKRGV 240
           GD A A QG V E+ N++ L        I+++ NNQ    TS     S    T+ +K   
Sbjct: 350 GDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAK--- 406

Query: 241 SFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSD------PAN 294
               P   V+G D  AV      A+ Y +  K  ++I+++ YR  GH+  D      P  
Sbjct: 407 MVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLM 466

Query: 295 YRTREEINEMRSNHDPIEQV-RKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEP 353
           Y+   +I      H    ++   +L+     +E +  E+    R  ++   E  +  +  
Sbjct: 467 YK---KI----KKHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWRPA 519

Query: 354 DP 355
           D 
Sbjct: 520 DW 521



 Score = 28.9 bits (66), Expect = 2.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 103 DQMITAYREHGHILAC 118
            Q+I AYR  GH+ A 
Sbjct: 84  LQLINAYRFRGHLAAN 99


>gnl|CDD|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase;
           Provisional.
          Length = 641

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 46/216 (21%), Positives = 81/216 (37%), Gaps = 61/216 (28%)

Query: 129 LTGRQGGISKGK-GGSMHMF-----STKNGFYGGHGIVGAQVSLGT--GIAFANKYRRSD 180
           LTGR+      +  G +  F     S  + F   H    +  S+    G A A    + D
Sbjct: 86  LTGRRDRFRTLRQKGGLSGFTKRSESEYDPFGAAH----SSTSISAALGFAKARALGQPD 141

Query: 181 KICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQY-------AMGTSVSRASAQT 233
              V   GDG+   G  YE+ N A   +  +I ++ +N+        A+   +S   +  
Sbjct: 142 GDVVAVIGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSD 201

Query: 234 NFSK-----RGVSFNIP---------------GMQ----------------VDGMDIRAV 257
            F++     +GV   +P               GM                 +DG D+ A+
Sbjct: 202 PFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEAL 261

Query: 258 KATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPA 293
            + +  A A      GP+++ ++T + RG++   PA
Sbjct: 262 LSVLRAARA---RADGPVLVHVVTEKGRGYA---PA 291


>gnl|CDD|180086 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase;
           Provisional.
          Length = 580

 Score = 38.9 bits (92), Expect = 0.002
 Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 42/180 (23%)

Query: 124 KIMAELTGRQGGIS--KGKGG---------SMH-MFSTKNGFYGGHGIVGAQVSLGTGIA 171
           KI   LTGR+      + KGG         S +  F        GH      +S   G+A
Sbjct: 82  KI---LTGRRDRFDTLRQKGGLSGFPKRSESEYDTFGA------GH--SSTSISAALGMA 130

Query: 172 FANKYRRSDK---ICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQY-------A 221
            A   +  +    + V+  GDGA   G  +E+ N A     ++I ++ +N+        A
Sbjct: 131 KARDLKGGEDRKVVAVI--GDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGA 188

Query: 222 MGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281
           +   ++R  + T F + G ++  P   +DG D+ A+  T+  A    +  KGP+++ ++T
Sbjct: 189 LSNYLARLRSSTLFEELGFNYIGP---IDGHDLDALIETLKNA----KDLKGPVLLHVVT 241


>gnl|CDD|181051 PRK07586, PRK07586, hypothetical protein; Validated.
          Length = 514

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 41/148 (27%), Positives = 57/148 (38%), Gaps = 44/148 (29%)

Query: 158 GIVGAQVSLGTGIAFANKYRRSDKICVVCF-GDGAANQGQVYESFNIAALW-----NLNV 211
           G +G  + L TG A A   R+     V+   GDG+A    +Y    I ALW     NL+V
Sbjct: 385 GAIGQGLPLATGAAVACPDRK-----VLALQGDGSA----MY---TIQALWTQARENLDV 432

Query: 212 IYVIENN-QYA--------MGTSVS--RASAQTNFSKRGVSFNIPGM----QVDGMDIRA 256
             VI  N  YA        +G      RA    +          P +      +GM + A
Sbjct: 433 TTVIFANRAYAILRGELARVGAGNPGPRALDMLDLDD-------PDLDWVALAEGMGVPA 485

Query: 257 VKAT----MDKAVAYCRAHKGPIIIEML 280
            + T       A+A   A  GP +IE +
Sbjct: 486 RRVTTAEEFADALAAALAEPGPHLIEAV 513


>gnl|CDD|161779 TIGR00232, tktlase_bact, transketolase, bacterial and yeast.  This
           model is designed to capture orthologs of bacterial
           transketolases. The group includes two from the yeast
           Saccharomyces cerevisiae but excludes dihydroxyactetone
           synthases (formaldehyde transketolases) from various
           yeasts and the even more distant mammalian
           transketolases. Among the family of thiamine
           diphosphate-dependent enzymes that includes
           transketolases, dihydroxyacetone synthases, pyruvate
           dehydrogenase E1-beta subunits, and
           deoxyxylulose-5-phosphate synthases, mammalian and
           bacterial transketolases seem not to be orthologous.
          Length = 653

 Score = 37.4 bits (87), Expect = 0.006
 Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 19/137 (13%)

Query: 156 GHGIVGAQVSLGTGIA---FANKYRR-----SDKICVVCFGDGAANQGQVYESFNIAALW 207
           G GI  A   +G  IA    A  + +      D    V  GDG   +G  YE  ++A   
Sbjct: 113 GQGIANA---VGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHL 169

Query: 208 NLNVIYVI-ENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQV-DGMDIRAVKATMDKAV 265
            L  + V+ ++N+ ++  +V  +  + + +KR  ++    ++V DG D+ A+ A +++A 
Sbjct: 170 KLGKLIVLYDSNRISIDGAVDGSFTE-DVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEA- 227

Query: 266 AYCRAHKG-PIIIEMLT 281
              +A K  P +IE+ T
Sbjct: 228 ---KASKDKPTLIEVTT 241


>gnl|CDD|180309 PRK05899, PRK05899, transketolase; Reviewed.
          Length = 624

 Score = 35.1 bits (82), Expect = 0.025
 Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 18/130 (13%)

Query: 164 VSLGTGIAFANKYRRSD-----------KICVVCFGDGAANQGQVYESFNIAALWNL-NV 211
           ++   G+A A KY  +               V+C GDG   +G  +E+ ++A    L N+
Sbjct: 124 LANAVGMALAEKYLAALFNRPGLDIVDHYTYVLC-GDGDLMEGISHEACSLAGHLKLGNL 182

Query: 212 IYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAH 271
           I + ++N+ ++         + +  KR  ++    ++VDG D+ A+    D A+   +A 
Sbjct: 183 IVIYDDNRISIDGPTEGWFTE-DVKKRFEAYGWHVIEVDGHDVEAI----DAAIEEAKAS 237

Query: 272 KGPIIIEMLT 281
             P +I   T
Sbjct: 238 TKPTLIIAKT 247


>gnl|CDD|183347 PRK11866, PRK11866, 2-oxoacid ferredoxin oxidoreductase subunit
           beta; Provisional.
          Length = 279

 Score = 35.1 bits (81), Expect = 0.026
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 154 YGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIY 213
           YG HGI G  + + TG+ +AN      K+ V+ +G      G        AA  N+++ Y
Sbjct: 55  YGIHGIHGRVLPIATGVKWANP-----KLTVIGYGGDGDGYGIGLGHLPHAARRNVDITY 109

Query: 214 VIENNQYAMGTSVSRASAQT 233
           ++ NNQ   G +  +AS  T
Sbjct: 110 IVSNNQ-VYGLTTGQASPTT 128


>gnl|CDD|183431 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase;
           Provisional.
          Length = 581

 Score = 34.2 bits (79), Expect = 0.057
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 164 VSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ 219
           ++L TG+A A   +      +   GDG+ + G   E  N AA    N+I ++ +NQ
Sbjct: 119 IALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDNQ 174


>gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase.  DXP
           synthase is a thiamine diphosphate-dependent enzyme
           related to transketolase and the pyruvate dehydrogenase
           E1-beta subunit. By an acyloin condensation of pyruvate
           with glyceraldehyde 3-phosphate, it produces
           1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine
           diphosphate (TPP), pyridoxal phosphate, and the
           isoprenoid building block isopentenyl diphosphate (IPP).
          Length = 617

 Score = 34.0 bits (78), Expect = 0.065
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 10/105 (9%)

Query: 129 LTGRQGGIS--KGKGGSMHMF-----STKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDK 181
           LTGR+   S  + K G +H F     S  + F  GH      +S G GIA A + + +D+
Sbjct: 78  LTGRREKFSTLRQKKG-LHGFPKRSESEYDVFSAGHS--STSISAGLGIAVAAEKKGADR 134

Query: 182 ICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSV 226
             V   GDGA   G  +E+ N A     ++I ++ +N+ ++  +V
Sbjct: 135 KTVCVIGDGAITAGMAFEALNHAGDLKTDMIVILNDNEMSISENV 179


>gnl|CDD|177870 PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate synthase.
          Length = 701

 Score = 32.8 bits (74), Expect = 0.14
 Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 7/122 (5%)

Query: 114 HILACGVDASKIMAELTGRQGGI-SKGKGGSM----HMFSTKNGFYGGHGIVGAQVSLGT 168
           +IL   V+ +     LT R   I S+ K G       + S  + F  GHG       LG 
Sbjct: 142 NILWDAVEQTYAHKVLTRRWSAIPSRQKNGISGVTSQLESEYDSFGTGHGCNSISAGLGL 201

Query: 169 GIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSR 228
            +A   K +R   + V+   +     GQ YE+ + A   + N+I ++ ++++++  ++  
Sbjct: 202 AVARDIKGKRDRVVAVI--DNATITAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPNMEE 259

Query: 229 AS 230
            S
Sbjct: 260 GS 261


>gnl|CDD|183345 PRK11864, PRK11864, 2-ketoisovalerate ferredoxin oxidoreductase
           subunit beta; Provisional.
          Length = 300

 Score = 31.6 bits (72), Expect = 0.34
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 4/76 (5%)

Query: 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCF-GDGA-ANQGQVYESFNIAALWNLNVIYV 214
           H    A  ++ +GI  A K R    + VV + GDG  A+ G  +++ + AA  N +++Y+
Sbjct: 68  HTAFAATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIG--FQALSGAAERNHDILYI 125

Query: 215 IENNQYAMGTSVSRAS 230
           + +N+  M T + R+S
Sbjct: 126 MYDNEAYMNTGIQRSS 141


>gnl|CDD|180253 PRK05778, PRK05778, 2-oxoglutarate ferredoxin oxidoreductase
           subunit beta; Validated.
          Length = 301

 Score = 31.0 bits (71), Expect = 0.54
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 16/76 (21%)

Query: 153 FYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDG-----AANQGQVYESFNIAALW 207
            +G H + G  ++  TG   AN     D   +V  GDG               F  A   
Sbjct: 65  SHGLHTLHGRAIAFATGAKLANP----DLEVIVVGGDGDLASIGGGH------FIHAGRR 114

Query: 208 NLNVIYVIENNQ-YAM 222
           N+++  ++ENN  Y +
Sbjct: 115 NIDITVIVENNGIYGL 130


>gnl|CDD|183348 PRK11867, PRK11867, 2-oxoglutarate ferredoxin oxidoreductase
           subunit beta; Reviewed.
          Length = 286

 Score = 30.6 bits (70), Expect = 0.61
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 22/79 (27%)

Query: 153 FYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCF-GDGAANQGQVYESFNI-------A 204
            YG H I G  +++ TG+  AN       + V+   GDG A          I       A
Sbjct: 64  TYGFHTIHGRALAIATGLKLANP-----DLTVIVVTGDGDA--------LAIGGNHFIHA 110

Query: 205 ALWNLNVIYVIENNQ-YAM 222
              N+++ Y++ NNQ Y +
Sbjct: 111 LRRNIDITYILFNNQIYGL 129


>gnl|CDD|163396 TIGR03684, arCOG00985, arCOG04150 universal archaeal PUA-domain
           protein.  This universal archaeal protein contains a
           domain possibly associated with RNA binding (pfam01472,
           TIGR00451).
          Length = 150

 Score = 29.9 bits (68), Expect = 1.0
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 92  IVGMKMSLTEGDQMITAYREHGHILACGV---DASKIMAELTGR 132
           IV    S+ EGD +      H   LA G+   DA ++  E  G+
Sbjct: 93  IVSADPSIKEGDIVFVVDETHRKPLAVGIALMDAEEMEEEKKGK 136


>gnl|CDD|180430 PRK06154, PRK06154, hypothetical protein; Provisional.
          Length = 565

 Score = 29.4 bits (66), Expect = 1.6
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 163 QVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAM 222
           Q+  G G+A   K  R D + +  +GD A   G     F  A    + ++ ++ NN ++M
Sbjct: 432 QLGYGLGLAMGAKLARPDALVINLWGDAAF--GMTGMDFETAVRERIPILTILLNN-FSM 488

Query: 223 G 223
           G
Sbjct: 489 G 489


>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
          Length = 943

 Score = 29.3 bits (65), Expect = 1.8
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 196 QVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIR 255
           ++ ++ +I + ++LN+ +  ENN+Y M +     +    F  +  + +I  M  D  +IR
Sbjct: 139 EIRQAIHIESFFSLNLAFQHENNKYEMESHAKHGAKMVTFIPK--NGHICKMVYD-KNIR 195

Query: 256 AVKATMDKAV 265
             KA  +  V
Sbjct: 196 IFKALGNDTV 205


>gnl|CDD|184408 PRK13937, PRK13937, phosphoheptose isomerase; Provisional.
          Length = 188

 Score = 29.1 bits (66), Expect = 2.0
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 5/36 (13%)

Query: 102 GDQMITAYREHGHILACG-----VDASKIMAELTGR 132
            + +I A    G IL CG      DA  I AEL GR
Sbjct: 28  AEALIEALANGGKILLCGNGGSAADAQHIAAELVGR 63


>gnl|CDD|181391 PRK08327, PRK08327, acetolactate synthase catalytic subunit;
           Validated.
          Length = 569

 Score = 28.8 bits (65), Expect = 2.1
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 145 HMFSTKNGFYGGHGIVGAQVSLG--TGIAFANKYRRSDKICVVCFGDGAANQGQVYESFN 202
                K G Y G G  G    LG   G A   K    D++ +   GDG+   G    +  
Sbjct: 414 QARLNKPGSYFGDGSAG---GLGWALGAALGAKLATPDRLVIATVGDGSFIFGVPEAAHW 470

Query: 203 IAALWNLNVIYVIENNQ 219
           +A  + L V+ V+ NN 
Sbjct: 471 VAERYGLPVLVVVFNNG 487


>gnl|CDD|180294 PRK05858, PRK05858, hypothetical protein; Provisional.
          Length = 542

 Score = 28.5 bits (64), Expect = 2.7
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 166 LGTGI--AFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENN 218
           LGTG   A A +  R  +  V+  GDGA   G      +     NL V+ VI NN
Sbjct: 409 LGTGPGYALAARLARPSRQVVLLQGDGAF--GFSLMDVDTLVRHNLPVVSVIGNN 461


>gnl|CDD|166510 PLN02869, PLN02869, fatty aldehyde decarbonylase.
          Length = 620

 Score = 28.3 bits (63), Expect = 3.0
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 317 RLLHNK-WASEGDLKEIEMNVRKIINNSVEFAQSDKE 352
           R+LHN+ W S    +  + N  +I++  +EF Q D+E
Sbjct: 57  RMLHNQLWISLSRYRTAKGN-NRIVDKGIEFEQVDRE 92


>gnl|CDD|162533 TIGR01781, Trep_dent_lipo, Treponema denticola clustered
           lipoprotein.  This model represents a family of six
           predicted lipoproteins from a region of about 20
           tandemly arranged genes in the Treponema denticola
           genome. Two other neighboring genes share the
           lipoprotein signal peptide region but do not show more
           extensive homology. The function of this locus is
           unknown.
          Length = 412

 Score = 28.4 bits (63), Expect = 3.1
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 253 DIRAVKATMDKAVAYCR----AHKGPIIIEMLTYR-YRGHSMSDPANYRTREEINEMRSN 307
           ++  +K   DK   YC+    A  G  +   + Y  Y+         Y   +E+N    +
Sbjct: 121 NVEVIKVERDKEFIYCKQKRTAKNGKDLFYSIKYEWYKRAKKFVNTKYELEQELNIGVID 180

Query: 308 HDPIEQ 313
              I++
Sbjct: 181 EKIIKE 186


>gnl|CDD|139997 PRK13938, PRK13938, phosphoheptose isomerase; Provisional.
          Length = 196

 Score = 28.2 bits (62), Expect = 3.3
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 5/35 (14%)

Query: 102 GDQMITAYREHGHILACG-----VDASKIMAELTG 131
           GD++I  YR    +  CG      DA    AELTG
Sbjct: 35  GDRLIAGYRAGARVFMCGNGGSAADAQHFAAELTG 69


>gnl|CDD|118088 pfam09552, RE_BstXI, BstXI restriction endonuclease.  This family
           includes the BstXI (recognizes and cleaves
           CCANNNNN^NTGG) restriction endonuclease.
          Length = 287

 Score = 28.0 bits (62), Expect = 3.7
 Identities = 33/152 (21%), Positives = 50/152 (32%), Gaps = 14/152 (9%)

Query: 181 KICVVCFGDGAA---NQGQVYESFNIAALWNLNVIYVIENNQYAM---GTSVSRASAQTN 234
           +   V  G  A     Q   +E +     W +  +        +    G  V R S  TN
Sbjct: 73  QPSFVKLGVNAFILYRQRSQFEEYPPLPDWEVRGLKKTGPIVRSKDVGGHYVLRLSGTTN 132

Query: 235 FSKRGVSFNIPGMQVDGMDIR----AVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMS 290
             +R +       +  G  IR    A   T++KA     ++   II  + +    G S  
Sbjct: 133 EKERKIRVGFNETEGPGAGIRAPEYANAETLEKARLQLESYYWLIIKSLNSAIDWGMSPK 192

Query: 291 DPANYRTREEINEMRSNHDPIEQVRKRLLHNK 322
           D A  R  E  NE +     I      LL  +
Sbjct: 193 D-ARKRRDEPYNEAQFQGLLINI---SLLEER 220


>gnl|CDD|162747 TIGR02177, PorB_KorB, 2-oxoacid:acceptor oxidoreductase, beta
           subunit, pyruvate/2-ketoisovalerate family.  Several
           related four-subunit enzymes may exist in the same
           species. This model describes a subfamily of beta
           subunits, representing mostly pyruvate and
           2-ketoisovalerate specific enzymes.
          Length = 287

 Score = 28.2 bits (63), Expect = 3.8
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 134 GGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAAN 193
            GI  G       +   NGF   HG+ G  + + TGI  AN         +V  GDG   
Sbjct: 34  SGI--GCSAKTPHYVNVNGF---HGLHGRALPVATGIKLANP----HLKVIVVGGDGDL- 83

Query: 194 QGQVYESFNIAALWNLNVIYVIENNQ 219
            G     F  A   N+++  ++ +NQ
Sbjct: 84  YGIGGNHFVAAGRRNVDITVIVHDNQ 109


>gnl|CDD|150392 pfam09710, Trep_dent_lipo, Treponema clustered lipoprotein
           (Trep_dent_lipo).  This entry represents a family of six
           predicted lipoproteins from a region of about 20
           tandemly arranged genes in the Treponema denticola
           genome. Two other neighbouring genes share the
           lipoprotein signal peptide region but do not show more
           extensive homology. The function of this locus is
           unknown.
          Length = 394

 Score = 27.6 bits (61), Expect = 5.3
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 253 DIRAVKATMDKAVAYCR----AHKGPIIIEMLTYR-YRGHSMSDPANYRTREEINEMRSN 307
           ++  +K   D    YC+       G  +   +TY+ Y    M  P +Y    E+N    N
Sbjct: 108 NLEFIKVKKDGEFIYCKQKAPTQNGKDLDYQVTYKWYNIEKMFLPTSYELLSELNIGVIN 167

Query: 308 HDPIEQ 313
            + IE 
Sbjct: 168 EELIEN 173


>gnl|CDD|132613 TIGR03574, selen_PSTK, L-seryl-tRNA(Sec) kinase, archaeal.  Members
           of this protein are L-seryl-tRNA(Sec) kinase. This
           enzyme is part of a two-step pathway in Eukaryota and
           Archaea for performing selenocysteine biosynthesis by
           changing serine misacylated on selenocysteine-tRNA to
           selenocysteine. This enzyme performs the first step,
           phosphorylation of the OH group of the serine side
           chain. This family represents archaeal proteins with
           this activity.
          Length = 249

 Score = 27.5 bits (61), Expect = 5.7
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 299 EEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKE 352
           EEI E+  N   IE+ +K     +   E  L +I+   R+I+   ++  + DKE
Sbjct: 161 EEILEISENKLKIEKPKKP---KRRTDENILNKIDKRTRQIVGELIKTGKLDKE 211


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0771    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,856,174
Number of extensions: 374169
Number of successful extensions: 777
Number of sequences better than 10.0: 1
Number of HSP's gapped: 764
Number of HSP's successfully gapped: 47
Length of query: 364
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 269
Effective length of database: 3,941,713
Effective search space: 1060320797
Effective search space used: 1060320797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)