RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|255764490|ref|YP_003065085.2| dehydrogenase, E1 component [Candidatus Liberibacter asiaticus str. psy62] (364 letters) >gnl|CDD|163176 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. Length = 315 Score = 542 bits (1399), Expect = e-155 Identities = 196/315 (62%), Positives = 237/315 (75%), Gaps = 1/315 (0%) Query: 49 KEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITA 108 KE+ L YR MLLIRRFEEKAGQLYGMG +GGFCHL IGQEAV VG+ +L D +IT+ Sbjct: 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITS 60 Query: 109 YREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGT 168 YR+HGH LA GV ++MAELTGR G SKGKGGSMHMF + FYGGHGIVGAQV L T Sbjct: 61 YRDHGHALARGVPPKEVMAELTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLAT 120 Query: 169 GIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSR 228 G+AFANKYR +D + FGDGAANQGQ YESFN+AALW L VI+VIENN YAMGTSV R Sbjct: 121 GLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMGTSVER 180 Query: 229 ASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHS 288 +S+ T+ KRG SF IPG +VDGMD+ AV+ +AV R+ KGPI++EM TYR+RGHS Sbjct: 181 SSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHS 240 Query: 289 MSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQ 348 MSDPA YR++EE+ E R DPIE+++ RL+ ASE +LKEI+ VR + +VEFA+ Sbjct: 241 MSDPAKYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFAE 299 Query: 349 SDKEPDPAELYSDIL 363 + EP ELY+D+ Sbjct: 300 NSPEPPVEELYTDVY 314 >gnl|CDD|177910 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit alpha. Length = 362 Score = 383 bits (986), Expect = e-107 Identities = 158/318 (49%), Positives = 219/318 (68%), Gaps = 4/318 (1%) Query: 46 EFNKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQM 105 E +K++ + +R M L+RR E A LY ++ GFCHL GQEAV VGM+ ++T+ D + Sbjct: 26 ETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAI 85 Query: 106 ITAYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVS 165 ITAYR+H L G ++ AEL GR+ G S+GKGGSMH + FYGGHGIVGAQV Sbjct: 86 ITAYRDHCTHLGRGGTVLEVFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVP 145 Query: 166 LGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTS 225 LG G+AFA KY + + + +GDGAANQGQ++E+ NIAALW+L VI+V ENN Y MGT+ Sbjct: 146 LGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNHYGMGTA 205 Query: 226 VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYR 285 RA+ + KRG +PG++VDGMD+ AVK A + + GPI++EM TYRY Sbjct: 206 EWRAAKSPAYYKRGDY--VPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRYH 262 Query: 286 GHSMSDP-ANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSV 344 GHSMSDP + YRTR+EI+ +R DPIE+VRK LL ++ A+E +LK+IE +RK ++++V Sbjct: 263 GHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDDAV 322 Query: 345 EFAQSDKEPDPAELYSDI 362 A+ PDP+EL++++ Sbjct: 323 AKAKESPMPDPSELFTNV 340 >gnl|CDD|178002 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring). Length = 433 Score = 273 bits (700), Expect = 4e-74 Identities = 125/322 (38%), Positives = 192/322 (59%), Gaps = 8/322 (2%) Query: 49 KEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMITA 108 +E+ L Y M+L R FE+ Q+Y G + GF HL GQEAV G L + D +++ Sbjct: 85 REEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVST 144 Query: 109 YREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGT 168 YR+H H L+ GV A +M+EL G+ G +G+GGSMHMFS ++ GG +G + + T Sbjct: 145 YRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVAT 204 Query: 169 GIAFANKYRRS-------DKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYA 221 G AF++KYRR D + + FGDG N GQ +E N+AALW L +++V+ENN +A Sbjct: 205 GAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA 264 Query: 222 MGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 +G S RA++ K+G +F +PG+ VDGMD+ V+ +A+ R +GP ++E T Sbjct: 265 IGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 324 Query: 282 YRYRGHSMSDPANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIIN 341 YR+RGHS++DP R E + DPI ++K L+ N A+E +LK IE + +++ Sbjct: 325 YRFRGHSLADPDELRDPAEKAHYAA-RDPIAALKKYLIENGLATEAELKAIEKKIDEVVE 383 Query: 342 NSVEFAQSDKEPDPAELYSDIL 363 ++VEFA + P ++L ++ Sbjct: 384 DAVEFADASPLPPRSQLLENVF 405 >gnl|CDD|132225 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. Length = 341 Score = 244 bits (625), Expect = 3e-65 Identities = 99/313 (31%), Positives = 163/313 (52%), Gaps = 12/313 (3%) Query: 48 NKEQELSAYRLMLLIRRFEEKAGQLYGMGMVGGFCHLCIGQEAVIVGMKMSLTEGDQMIT 107 + E+ + YR M+L RRF+ KA L G +G + +GQEA VG ++L + D + Sbjct: 22 SDEELVELYRDMVLTRRFDTKALALQRQGRLGTYA-PNLGQEAAQVGSALALRKDDWVFP 80 Query: 108 AYREHGHILACGVDASKIMAELTGRQGGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLG 167 +YR+H +LA GV +I+ G + G +G ++ + +G Q Sbjct: 81 SYRDHAAMLARGVPLVEILLYWRGDERGSWDPEGVNILPPNI---------PIGTQYLHA 131 Query: 168 TGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVS 227 G+A+A K R D + V FGDG ++G YE+ N A ++ V++ ++NNQ+A+ S Sbjct: 132 AGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRS 191 Query: 228 RASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGH 287 + +A +++ +++ IPG+QVDG D+ AV A +AV R+ GP +IE +TYR H Sbjct: 192 KQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPH 251 Query: 288 SMSD-PANYRTREEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEF 346 + +D P YRT+EE E R DPI ++RK L E + +E + +V Sbjct: 252 TTADDPTRYRTKEEEEEWRK-KDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAE 310 Query: 347 AQSDKEPDPAELY 359 A + P +++ Sbjct: 311 ALALPPPPVDDIF 323 >gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase. Length = 929 Score = 59.9 bits (145), Expect = 1e-09 Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 4/173 (2%) Query: 188 GDGA-ANQGQVYESFNIAALWNLNV---IYVIENNQYAMGTSVSRASAQTNFSKRGVSFN 243 GD A A QG V E+ N++ L +V I++I NNQ T+ A + S Sbjct: 351 GDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKMIQ 410 Query: 244 IPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPANYRTREEINE 303 P V+ D AV AV Y K + I+++ YR GH+ +D + + Sbjct: 411 APIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQPLMYQK 470 Query: 304 MRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEPDPA 356 ++ + P + +L+ A+E D+ E+ R + + S +E + A Sbjct: 471 IKKHPTPRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWREMNTA 523 >gnl|CDD|183391 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed. Length = 1228 Score = 52.6 bits (127), Expect = 2e-07 Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 26/142 (18%) Query: 188 GDGA-ANQGQVYESFNIAALWNLNV---IYVIENNQYAMGTS--VSRASA-QTNFSKRGV 240 GD A A QG V E+ N++ L I+++ NNQ T+ SR+S T+ +K Sbjct: 655 GDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVAK--- 711 Query: 241 SFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGH------SMSDPAN 294 P V+G D AV A Y + ++I+++ YR RGH SM+ P Sbjct: 712 MIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLM 771 Query: 295 YRTREEINEMRSNHDPIEQVRK 316 Y I+ RS VRK Sbjct: 772 YDL---IDAKRS-------VRK 783 Score = 27.6 bits (62), Expect = 5.0 Identities = 7/14 (50%), Positives = 11/14 (78%) Query: 104 QMITAYREHGHILA 117 ++I AYR GH++A Sbjct: 391 ELIHAYRVRGHLMA 404 Score = 27.2 bits (61), Expect = 6.9 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 3/26 (11%) Query: 276 IIEML-TYRYRGHSMSD--PANYRTR 298 ++E++ YR RGH M+D P YR R Sbjct: 389 VMELIHAYRVRGHLMADTDPLEYRQR 414 >gnl|CDD|177878 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate synthase. Length = 641 Score = 46.2 bits (109), Expect = 1e-05 Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 42/196 (21%) Query: 136 ISKGKGGSMHMFSTKNGFYG------------GHGIVGAQVSLGTGIAFANKYRRSDKIC 183 I G+ G M NG G G G +S G G+A + + Sbjct: 143 ILTGRRGKMKTIRQTNGLSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSV 202 Query: 184 VVCFGDGAANQGQVYESFNIAALWNLNVIYVI-ENNQYAMGTS----------------- 225 V GDGA GQ YE+ N A + N+I ++ +N Q ++ T+ Sbjct: 203 VSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALS 262 Query: 226 -------VSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIE 278 + R ++ T F + G + P VDG +I + + ++ + GP++I Sbjct: 263 RLQSNCGMIRETSSTLFEELGFHYVGP---VDGHNIDDLVSILETLKS--TKTIGPVLIH 317 Query: 279 MLTYRYRGHSMSDPAN 294 ++T + RG+ ++ A+ Sbjct: 318 VVTEKGRGYPYAERAD 333 >gnl|CDD|178194 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate synthase. Length = 677 Score = 39.9 bits (93), Expect = 0.001 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 12/96 (12%) Query: 136 ISKGKGGSMHMFSTKNGFYG------------GHGIVGAQVSLGTGIAFANKYRRSDKIC 183 I G+ MH NG G G G +S G G+A + Sbjct: 110 ILTGRRDKMHTMRQTNGLSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNV 169 Query: 184 VVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ 219 V GDGA GQ YE+ N A + ++I ++ +N+ Sbjct: 170 VAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 205 >gnl|CDD|181824 PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed. Length = 924 Score = 40.1 bits (95), Expect = 0.001 Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 24/182 (13%) Query: 188 GDGA-ANQGQVYESFNIAALWNLNV---IYVIENNQYAMGTSVSRA-SAQ--TNFSKRGV 240 GD A A QG V E+ N++ L I+++ NNQ TS S T+ +K Sbjct: 350 GDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAK--- 406 Query: 241 SFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSD------PAN 294 P V+G D AV A+ Y + K ++I+++ YR GH+ D P Sbjct: 407 MVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLM 466 Query: 295 YRTREEINEMRSNHDPIEQV-RKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKEP 353 Y+ +I H ++ +L+ +E + E+ R ++ E + + Sbjct: 467 YK---KI----KKHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWRPA 519 Query: 354 DP 355 D Sbjct: 520 DW 521 Score = 28.9 bits (66), Expect = 2.3 Identities = 8/16 (50%), Positives = 10/16 (62%) Query: 103 DQMITAYREHGHILAC 118 Q+I AYR GH+ A Sbjct: 84 LQLINAYRFRGHLAAN 99 >gnl|CDD|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional. Length = 641 Score = 38.9 bits (91), Expect = 0.002 Identities = 46/216 (21%), Positives = 81/216 (37%), Gaps = 61/216 (28%) Query: 129 LTGRQGGISKGK-GGSMHMF-----STKNGFYGGHGIVGAQVSLGT--GIAFANKYRRSD 180 LTGR+ + G + F S + F H + S+ G A A + D Sbjct: 86 LTGRRDRFRTLRQKGGLSGFTKRSESEYDPFGAAH----SSTSISAALGFAKARALGQPD 141 Query: 181 KICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQY-------AMGTSVSRASAQT 233 V GDG+ G YE+ N A + +I ++ +N+ A+ +S + Sbjct: 142 GDVVAVIGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSD 201 Query: 234 NFSK-----RGVSFNIP---------------GMQ----------------VDGMDIRAV 257 F++ +GV +P GM +DG D+ A+ Sbjct: 202 PFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEAL 261 Query: 258 KATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMSDPA 293 + + A A GP+++ ++T + RG++ PA Sbjct: 262 LSVLRAARA---RADGPVLVHVVTEKGRGYA---PA 291 >gnl|CDD|180086 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional. Length = 580 Score = 38.9 bits (92), Expect = 0.002 Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 42/180 (23%) Query: 124 KIMAELTGRQGGIS--KGKGG---------SMH-MFSTKNGFYGGHGIVGAQVSLGTGIA 171 KI LTGR+ + KGG S + F GH +S G+A Sbjct: 82 KI---LTGRRDRFDTLRQKGGLSGFPKRSESEYDTFGA------GH--SSTSISAALGMA 130 Query: 172 FANKYRRSDK---ICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQY-------A 221 A + + + V+ GDGA G +E+ N A ++I ++ +N+ A Sbjct: 131 KARDLKGGEDRKVVAVI--GDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGA 188 Query: 222 MGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAHKGPIIIEMLT 281 + ++R + T F + G ++ P +DG D+ A+ T+ A + KGP+++ ++T Sbjct: 189 LSNYLARLRSSTLFEELGFNYIGP---IDGHDLDALIETLKNA----KDLKGPVLLHVVT 241 >gnl|CDD|181051 PRK07586, PRK07586, hypothetical protein; Validated. Length = 514 Score = 37.9 bits (89), Expect = 0.004 Identities = 41/148 (27%), Positives = 57/148 (38%), Gaps = 44/148 (29%) Query: 158 GIVGAQVSLGTGIAFANKYRRSDKICVVCF-GDGAANQGQVYESFNIAALW-----NLNV 211 G +G + L TG A A R+ V+ GDG+A +Y I ALW NL+V Sbjct: 385 GAIGQGLPLATGAAVACPDRK-----VLALQGDGSA----MY---TIQALWTQARENLDV 432 Query: 212 IYVIENN-QYA--------MGTSVS--RASAQTNFSKRGVSFNIPGM----QVDGMDIRA 256 VI N YA +G RA + P + +GM + A Sbjct: 433 TTVIFANRAYAILRGELARVGAGNPGPRALDMLDLDD-------PDLDWVALAEGMGVPA 485 Query: 257 VKAT----MDKAVAYCRAHKGPIIIEML 280 + T A+A A GP +IE + Sbjct: 486 RRVTTAEEFADALAAALAEPGPHLIEAV 513 >gnl|CDD|161779 TIGR00232, tktlase_bact, transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. Length = 653 Score = 37.4 bits (87), Expect = 0.006 Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 19/137 (13%) Query: 156 GHGIVGAQVSLGTGIA---FANKYRR-----SDKICVVCFGDGAANQGQVYESFNIAALW 207 G GI A +G IA A + + D V GDG +G YE ++A Sbjct: 113 GQGIANA---VGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHL 169 Query: 208 NLNVIYVI-ENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQV-DGMDIRAVKATMDKAV 265 L + V+ ++N+ ++ +V + + + +KR ++ ++V DG D+ A+ A +++A Sbjct: 170 KLGKLIVLYDSNRISIDGAVDGSFTE-DVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEA- 227 Query: 266 AYCRAHKG-PIIIEMLT 281 +A K P +IE+ T Sbjct: 228 ---KASKDKPTLIEVTT 241 >gnl|CDD|180309 PRK05899, PRK05899, transketolase; Reviewed. Length = 624 Score = 35.1 bits (82), Expect = 0.025 Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 18/130 (13%) Query: 164 VSLGTGIAFANKYRRSD-----------KICVVCFGDGAANQGQVYESFNIAALWNL-NV 211 ++ G+A A KY + V+C GDG +G +E+ ++A L N+ Sbjct: 124 LANAVGMALAEKYLAALFNRPGLDIVDHYTYVLC-GDGDLMEGISHEACSLAGHLKLGNL 182 Query: 212 IYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIRAVKATMDKAVAYCRAH 271 I + ++N+ ++ + + KR ++ ++VDG D+ A+ D A+ +A Sbjct: 183 IVIYDDNRISIDGPTEGWFTE-DVKKRFEAYGWHVIEVDGHDVEAI----DAAIEEAKAS 237 Query: 272 KGPIIIEMLT 281 P +I T Sbjct: 238 TKPTLIIAKT 247 >gnl|CDD|183347 PRK11866, PRK11866, 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional. Length = 279 Score = 35.1 bits (81), Expect = 0.026 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 6/80 (7%) Query: 154 YGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIY 213 YG HGI G + + TG+ +AN K+ V+ +G G AA N+++ Y Sbjct: 55 YGIHGIHGRVLPIATGVKWANP-----KLTVIGYGGDGDGYGIGLGHLPHAARRNVDITY 109 Query: 214 VIENNQYAMGTSVSRASAQT 233 ++ NNQ G + +AS T Sbjct: 110 IVSNNQ-VYGLTTGQASPTT 128 >gnl|CDD|183431 PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional. Length = 581 Score = 34.2 bits (79), Expect = 0.057 Identities = 17/56 (30%), Positives = 28/56 (50%) Query: 164 VSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQ 219 ++L TG+A A + + GDG+ + G E N AA N+I ++ +NQ Sbjct: 119 IALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDNQ 174 >gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP). Length = 617 Score = 34.0 bits (78), Expect = 0.065 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 10/105 (9%) Query: 129 LTGRQGGIS--KGKGGSMHMF-----STKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDK 181 LTGR+ S + K G +H F S + F GH +S G GIA A + + +D+ Sbjct: 78 LTGRREKFSTLRQKKG-LHGFPKRSESEYDVFSAGHS--STSISAGLGIAVAAEKKGADR 134 Query: 182 ICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSV 226 V GDGA G +E+ N A ++I ++ +N+ ++ +V Sbjct: 135 KTVCVIGDGAITAGMAFEALNHAGDLKTDMIVILNDNEMSISENV 179 >gnl|CDD|177870 PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate synthase. Length = 701 Score = 32.8 bits (74), Expect = 0.14 Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 7/122 (5%) Query: 114 HILACGVDASKIMAELTGRQGGI-SKGKGGSM----HMFSTKNGFYGGHGIVGAQVSLGT 168 +IL V+ + LT R I S+ K G + S + F GHG LG Sbjct: 142 NILWDAVEQTYAHKVLTRRWSAIPSRQKNGISGVTSQLESEYDSFGTGHGCNSISAGLGL 201 Query: 169 GIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAMGTSVSR 228 +A K +R + V+ + GQ YE+ + A + N+I ++ ++++++ ++ Sbjct: 202 AVARDIKGKRDRVVAVI--DNATITAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPNMEE 259 Query: 229 AS 230 S Sbjct: 260 GS 261 >gnl|CDD|183345 PRK11864, PRK11864, 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional. Length = 300 Score = 31.6 bits (72), Expect = 0.34 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 4/76 (5%) Query: 157 HGIVGAQVSLGTGIAFANKYRRSDKICVVCF-GDGA-ANQGQVYESFNIAALWNLNVIYV 214 H A ++ +GI A K R + VV + GDG A+ G +++ + AA N +++Y+ Sbjct: 68 HTAFAATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIG--FQALSGAAERNHDILYI 125 Query: 215 IENNQYAMGTSVSRAS 230 + +N+ M T + R+S Sbjct: 126 MYDNEAYMNTGIQRSS 141 >gnl|CDD|180253 PRK05778, PRK05778, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated. Length = 301 Score = 31.0 bits (71), Expect = 0.54 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 16/76 (21%) Query: 153 FYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDG-----AANQGQVYESFNIAALW 207 +G H + G ++ TG AN D +V GDG F A Sbjct: 65 SHGLHTLHGRAIAFATGAKLANP----DLEVIVVGGDGDLASIGGGH------FIHAGRR 114 Query: 208 NLNVIYVIENNQ-YAM 222 N+++ ++ENN Y + Sbjct: 115 NIDITVIVENNGIYGL 130 >gnl|CDD|183348 PRK11867, PRK11867, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed. Length = 286 Score = 30.6 bits (70), Expect = 0.61 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 22/79 (27%) Query: 153 FYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCF-GDGAANQGQVYESFNI-------A 204 YG H I G +++ TG+ AN + V+ GDG A I A Sbjct: 64 TYGFHTIHGRALAIATGLKLANP-----DLTVIVVTGDGDA--------LAIGGNHFIHA 110 Query: 205 ALWNLNVIYVIENNQ-YAM 222 N+++ Y++ NNQ Y + Sbjct: 111 LRRNIDITYILFNNQIYGL 129 >gnl|CDD|163396 TIGR03684, arCOG00985, arCOG04150 universal archaeal PUA-domain protein. This universal archaeal protein contains a domain possibly associated with RNA binding (pfam01472, TIGR00451). Length = 150 Score = 29.9 bits (68), Expect = 1.0 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%) Query: 92 IVGMKMSLTEGDQMITAYREHGHILACGV---DASKIMAELTGR 132 IV S+ EGD + H LA G+ DA ++ E G+ Sbjct: 93 IVSADPSIKEGDIVFVVDETHRKPLAVGIALMDAEEMEEEKKGK 136 >gnl|CDD|180430 PRK06154, PRK06154, hypothetical protein; Provisional. Length = 565 Score = 29.4 bits (66), Expect = 1.6 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Query: 163 QVSLGTGIAFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENNQYAM 222 Q+ G G+A K R D + + +GD A G F A + ++ ++ NN ++M Sbjct: 432 QLGYGLGLAMGAKLARPDALVINLWGDAAF--GMTGMDFETAVRERIPILTILLNN-FSM 488 Query: 223 G 223 G Sbjct: 489 G 489 >gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional. Length = 943 Score = 29.3 bits (65), Expect = 1.8 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%) Query: 196 QVYESFNIAALWNLNVIYVIENNQYAMGTSVSRASAQTNFSKRGVSFNIPGMQVDGMDIR 255 ++ ++ +I + ++LN+ + ENN+Y M + + F + + +I M D +IR Sbjct: 139 EIRQAIHIESFFSLNLAFQHENNKYEMESHAKHGAKMVTFIPK--NGHICKMVYD-KNIR 195 Query: 256 AVKATMDKAV 265 KA + V Sbjct: 196 IFKALGNDTV 205 >gnl|CDD|184408 PRK13937, PRK13937, phosphoheptose isomerase; Provisional. Length = 188 Score = 29.1 bits (66), Expect = 2.0 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 5/36 (13%) Query: 102 GDQMITAYREHGHILACG-----VDASKIMAELTGR 132 + +I A G IL CG DA I AEL GR Sbjct: 28 AEALIEALANGGKILLCGNGGSAADAQHIAAELVGR 63 >gnl|CDD|181391 PRK08327, PRK08327, acetolactate synthase catalytic subunit; Validated. Length = 569 Score = 28.8 bits (65), Expect = 2.1 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 5/77 (6%) Query: 145 HMFSTKNGFYGGHGIVGAQVSLG--TGIAFANKYRRSDKICVVCFGDGAANQGQVYESFN 202 K G Y G G G LG G A K D++ + GDG+ G + Sbjct: 414 QARLNKPGSYFGDGSAG---GLGWALGAALGAKLATPDRLVIATVGDGSFIFGVPEAAHW 470 Query: 203 IAALWNLNVIYVIENNQ 219 +A + L V+ V+ NN Sbjct: 471 VAERYGLPVLVVVFNNG 487 >gnl|CDD|180294 PRK05858, PRK05858, hypothetical protein; Provisional. Length = 542 Score = 28.5 bits (64), Expect = 2.7 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Query: 166 LGTGI--AFANKYRRSDKICVVCFGDGAANQGQVYESFNIAALWNLNVIYVIENN 218 LGTG A A + R + V+ GDGA G + NL V+ VI NN Sbjct: 409 LGTGPGYALAARLARPSRQVVLLQGDGAF--GFSLMDVDTLVRHNLPVVSVIGNN 461 >gnl|CDD|166510 PLN02869, PLN02869, fatty aldehyde decarbonylase. Length = 620 Score = 28.3 bits (63), Expect = 3.0 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Query: 317 RLLHNK-WASEGDLKEIEMNVRKIINNSVEFAQSDKE 352 R+LHN+ W S + + N +I++ +EF Q D+E Sbjct: 57 RMLHNQLWISLSRYRTAKGN-NRIVDKGIEFEQVDRE 92 >gnl|CDD|162533 TIGR01781, Trep_dent_lipo, Treponema denticola clustered lipoprotein. This model represents a family of six predicted lipoproteins from a region of about 20 tandemly arranged genes in the Treponema denticola genome. Two other neighboring genes share the lipoprotein signal peptide region but do not show more extensive homology. The function of this locus is unknown. Length = 412 Score = 28.4 bits (63), Expect = 3.1 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 253 DIRAVKATMDKAVAYCR----AHKGPIIIEMLTYR-YRGHSMSDPANYRTREEINEMRSN 307 ++ +K DK YC+ A G + + Y Y+ Y +E+N + Sbjct: 121 NVEVIKVERDKEFIYCKQKRTAKNGKDLFYSIKYEWYKRAKKFVNTKYELEQELNIGVID 180 Query: 308 HDPIEQ 313 I++ Sbjct: 181 EKIIKE 186 >gnl|CDD|139997 PRK13938, PRK13938, phosphoheptose isomerase; Provisional. Length = 196 Score = 28.2 bits (62), Expect = 3.3 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 5/35 (14%) Query: 102 GDQMITAYREHGHILACG-----VDASKIMAELTG 131 GD++I YR + CG DA AELTG Sbjct: 35 GDRLIAGYRAGARVFMCGNGGSAADAQHFAAELTG 69 >gnl|CDD|118088 pfam09552, RE_BstXI, BstXI restriction endonuclease. This family includes the BstXI (recognizes and cleaves CCANNNNN^NTGG) restriction endonuclease. Length = 287 Score = 28.0 bits (62), Expect = 3.7 Identities = 33/152 (21%), Positives = 50/152 (32%), Gaps = 14/152 (9%) Query: 181 KICVVCFGDGAA---NQGQVYESFNIAALWNLNVIYVIENNQYAM---GTSVSRASAQTN 234 + V G A Q +E + W + + + G V R S TN Sbjct: 73 QPSFVKLGVNAFILYRQRSQFEEYPPLPDWEVRGLKKTGPIVRSKDVGGHYVLRLSGTTN 132 Query: 235 FSKRGVSFNIPGMQVDGMDIR----AVKATMDKAVAYCRAHKGPIIIEMLTYRYRGHSMS 290 +R + + G IR A T++KA ++ II + + G S Sbjct: 133 EKERKIRVGFNETEGPGAGIRAPEYANAETLEKARLQLESYYWLIIKSLNSAIDWGMSPK 192 Query: 291 DPANYRTREEINEMRSNHDPIEQVRKRLLHNK 322 D A R E NE + I LL + Sbjct: 193 D-ARKRRDEPYNEAQFQGLLINI---SLLEER 220 >gnl|CDD|162747 TIGR02177, PorB_KorB, 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes. Length = 287 Score = 28.2 bits (63), Expect = 3.8 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 10/86 (11%) Query: 134 GGISKGKGGSMHMFSTKNGFYGGHGIVGAQVSLGTGIAFANKYRRSDKICVVCFGDGAAN 193 GI G + NGF HG+ G + + TGI AN +V GDG Sbjct: 34 SGI--GCSAKTPHYVNVNGF---HGLHGRALPVATGIKLANP----HLKVIVVGGDGDL- 83 Query: 194 QGQVYESFNIAALWNLNVIYVIENNQ 219 G F A N+++ ++ +NQ Sbjct: 84 YGIGGNHFVAAGRRNVDITVIVHDNQ 109 >gnl|CDD|150392 pfam09710, Trep_dent_lipo, Treponema clustered lipoprotein (Trep_dent_lipo). This entry represents a family of six predicted lipoproteins from a region of about 20 tandemly arranged genes in the Treponema denticola genome. Two other neighbouring genes share the lipoprotein signal peptide region but do not show more extensive homology. The function of this locus is unknown. Length = 394 Score = 27.6 bits (61), Expect = 5.3 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 5/66 (7%) Query: 253 DIRAVKATMDKAVAYCR----AHKGPIIIEMLTYR-YRGHSMSDPANYRTREEINEMRSN 307 ++ +K D YC+ G + +TY+ Y M P +Y E+N N Sbjct: 108 NLEFIKVKKDGEFIYCKQKAPTQNGKDLDYQVTYKWYNIEKMFLPTSYELLSELNIGVIN 167 Query: 308 HDPIEQ 313 + IE Sbjct: 168 EELIEN 173 >gnl|CDD|132613 TIGR03574, selen_PSTK, L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity. Length = 249 Score = 27.5 bits (61), Expect = 5.7 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Query: 299 EEINEMRSNHDPIEQVRKRLLHNKWASEGDLKEIEMNVRKIINNSVEFAQSDKE 352 EEI E+ N IE+ +K + E L +I+ R+I+ ++ + DKE Sbjct: 161 EEILEISENKLKIEKPKKP---KRRTDENILNKIDKRTRQIVGELIKTGKLDKE 211 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.134 0.391 Gapped Lambda K H 0.267 0.0771 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,856,174 Number of extensions: 374169 Number of successful extensions: 777 Number of sequences better than 10.0: 1 Number of HSP's gapped: 764 Number of HSP's successfully gapped: 47 Length of query: 364 Length of database: 5,994,473 Length adjustment: 95 Effective length of query: 269 Effective length of database: 3,941,713 Effective search space: 1060320797 Effective search space used: 1060320797 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.0 bits)