Query gi|255764491|ref|YP_003065078.2| hypothetical protein CLIBASIA_02760 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 55
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 14:42:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764491.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3ikm_A DNA polymerase subunit 49.7 14 0.00043 18.4 2.8 42 12-53 28-69 (77)
2 >2uva_G Fatty acid synthase be 18.8 53 0.0016 15.4 1.4 12 42-53 10-21 (58)
3 >1lyp_A CAP18; lipopolysacchar 13.4 76 0.0023 14.6 1.1 14 27-40 1-14 (32)
4 >1j3b_A ATP-dependent phosphoe 9.1 1.6E+02 0.0046 13.0 2.0 30 19-48 39-77 (110)
5 >2p0o_A Hypothetical protein D 8.3 1.4E+02 0.0042 13.2 1.0 26 16-41 143-168 (225)
6 >1dxh_A Ornithine carbamoyltra 8.1 1.4E+02 0.0041 13.2 0.9 11 42-52 9-19 (32)
7 >1j9j_A Stationary phase survi 7.4 1.9E+02 0.0055 12.6 1.3 11 3-13 161-171 (233)
8 >2vvf_A Major capsid protein P 6.8 2E+02 0.0059 12.4 1.8 42 3-44 34-78 (130)
9 >2v4n_A Multifunctional protei 6.7 2E+02 0.006 12.4 1.3 10 43-52 214-223 (233)
10 >1x7f_A Outer surface protein; 6.7 1.9E+02 0.0055 12.6 1.0 24 21-44 174-197 (267)
No 1
>>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens} (A:852-928)
Probab=49.68 E-value=14 Score=18.43 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=34.6
Q ss_pred EEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 468998943688521378888852224547678999998752
Q gi|255764491|r 12 IKTISLECEYGRPYNGLGKRLEKYNNQRTQQDGKQIREKYVT 53 (55)
Q Consensus 12 iktisleceygrpynglgkrlekynnqrtqqdgkqirekyvt 53 (55)
-|+|..-.-||---.+|++.|-+|+-.-+.+++++++++|-.
T Consensus 28 AK~infGiiYG~g~~~La~~l~~~~~gis~~eA~~~~~~f~~ 69 (77)
T 3ikm_A 28 AKIFNYGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYA 69 (77)
T ss_dssp HHHHHHHHHHSCCTHHHHHHHHHHSCTTHHHHHHHHHHHHHH
T ss_pred HHHCCHHHEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 443040200167699999999975899899999999999999
No 2
>>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* (G:1725-1782)
Probab=18.83 E-value=53 Score=15.44 Aligned_cols=12 Identities=42% Similarity=0.819 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHH
Q ss_conf 678999998752
Q gi|255764491|r 42 QDGKQIREKYVT 53 (55)
Q Consensus 42 qdgkqirekyvt 53 (55)
..|++||+.|..
T Consensus 10 ~rGr~IR~NYm~ 21 (58)
T 2uva_G 10 PRGKIIRQNYMS 21 (58)
T ss_dssp HHHHHHHHHHHT
T ss_pred CCCCHHHHHHHH
T ss_conf 654146654431
No 3
>>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} (A:)
Probab=13.39 E-value=76 Score=14.62 Aligned_cols=14 Identities=50% Similarity=0.797 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 37888885222454
Q gi|255764491|r 27 GLGKRLEKYNNQRT 40 (55)
Q Consensus 27 glgkrlekynnqrt 40 (55)
||.|||.|+.|.-.
T Consensus 1 glrkrlrkfrnkik 14 (32)
T 1lyp_A 1 GLRKRLRKFRNKIK 14 (32)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
T ss_conf 97879999999999
No 4
>>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus HB8} (A:210-216,A:361-417,A:484-529)
Probab=9.12 E-value=1.6e+02 Score=12.98 Aligned_cols=30 Identities=27% Similarity=0.499 Sum_probs=22.2
Q ss_pred ECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4368852---------13788888522245476789999
Q gi|255764491|r 19 CEYGRPY---------NGLGKRLEKYNNQRTQQDGKQIR 48 (55)
Q Consensus 19 ceygrpy---------nglgkrlekynnqrtqqdgkqir 48 (55)
.-+|-|+ .-|++|++++|-+.|-.|...-.
T Consensus 39 ~Cfg~pFl~l~p~~Ya~~L~~k~~~hNPrnTW~Dk~aYd 77 (110)
T 1j3b_A 39 ACFGAPFLPMHPGVYARMLGEKIRKHNPRETWADKEAYD 77 (110)
T ss_dssp GGGCGGGCSSCHHHHHHHHHHHHHHHCGGGGSSCHHHHH
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCHHHHH
T ss_conf 146776567777899999999998669856058989999
No 5
>>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05913, PSI-2, protein structure initiative; 2.15A {Enterococcus faecalis V583} (A:1-225)
Probab=8.29 E-value=1.4e+02 Score=13.18 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=16.7
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 98943688521378888852224547
Q gi|255764491|r 16 SLECEYGRPYNGLGKRLEKYNNQRTQ 41 (55)
Q Consensus 16 sleceygrpynglgkrlekynnqrtq 41 (55)
...-=|-|||.||+...-.-.|++-.
T Consensus 143 acHNFYPr~~TGLs~~~f~~~n~~~k 168 (225)
T 2p0o_A 143 AWHNYYPRPETGIGTTFFNEKNRWLK 168 (225)
T ss_dssp EECCCCCSTTCSBCHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98555799887889999999999999
No 6
>>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} (A:275-306)
Probab=8.13 E-value=1.4e+02 Score=13.23 Aligned_cols=11 Identities=55% Similarity=0.776 Sum_probs=8.6
Q ss_pred HHHHHHHHHHH
Q ss_conf 67899999875
Q gi|255764491|r 42 QDGKQIREKYV 52 (55)
Q Consensus 42 qdgkqirekyv 52 (55)
.-|++|.|||-
T Consensus 9 ~vG~~i~ekyg 19 (32)
T 1dxh_A 9 KVGKQIAEQYP 19 (32)
T ss_dssp HHHHHHHHHCG
T ss_pred CCCCHHHHCCC
T ss_conf 13521121078
No 7
>>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} (A:1-233)
Probab=7.38 E-value=1.9e+02 Score=12.57 Aligned_cols=11 Identities=45% Similarity=0.570 Sum_probs=3.9
Q ss_pred EEEEEEECCEE
Q ss_conf 59999706046
Q gi|255764491|r 3 LNILIVNDQIK 13 (55)
Q Consensus 3 lnilivndqik 13 (55)
|||=+-..+++
T Consensus 161 lNVN~P~~~~~ 171 (233)
T 1j9j_A 161 LNINVPAGEIK 171 (233)
T ss_dssp EEEEECSSCCC
T ss_pred CCCCCCHHHHC
T ss_conf 36889836607
No 8
>>2vvf_A Major capsid protein P2; double jelly-roll viral capsid, viral protein; 2.5A {Pseudoalteromonas phage PM2} PDB: 2w0c_A (A:140-269)
Probab=6.81 E-value=2e+02 Score=12.40 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=30.2
Q ss_pred EEEEEEECCEEEEEEEECCCCCCCHHHHHHHHHH---HHHHHHHH
Q ss_conf 5999970604689989436885213788888522---24547678
Q gi|255764491|r 3 LNILIVNDQIKTISLECEYGRPYNGLGKRLEKYN---NQRTQQDG 44 (55)
Q Consensus 3 lnilivndqiktisleceygrpynglgkrlekyn---nqrtqqdg 44 (55)
.-|.+..+.|..+-.+-.+-.-|+-.-+-.+.|+ |.|.+|+|
T Consensus 34 kriHf~~~~i~~veV~RDg~~~~d~~~~a~n~~~l~~~~r~pQag 78 (130)
T 2vvf_A 34 AAIHIKAAGVDAVEFQIDGTKWRDLLKKADNDYILEQYGKAVLDN 78 (130)
T ss_dssp EEEEEECSSEEEEEEEETTEEEEEEEEHHHHHHHHHHTTCCCCTT
T ss_pred HHHHCCCCCCEEEEEEECCEEEECCCHHHHHHHHHHHCCCCCCCC
T ss_conf 766503588008999976836872635667789999719876789
No 9
>>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosphatase, mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A (A:1-233)
Probab=6.73 E-value=2e+02 Score=12.38 Aligned_cols=10 Identities=40% Similarity=0.514 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q ss_conf 7899999875
Q gi|255764491|r 43 DGKQIREKYV 52 (55)
Q Consensus 43 dgkqirekyv 52 (55)
|...+++.|+
T Consensus 214 D~~a~~~G~i 223 (233)
T 2v4n_A 214 DFAAVDEGYV 223 (233)
T ss_dssp HHHHHHTTCE
T ss_pred HHHHHHCCEE
T ss_conf 9999979948
No 10
>>1x7f_A Outer surface protein; structural genomics, unknown function, protein structure initiative, MCSG, PSI; 2.30A {Bacillus cereus atcc 14579} (A:1-267)
Probab=6.71 E-value=1.9e+02 Score=12.56 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 688521378888852224547678
Q gi|255764491|r 21 YGRPYNGLGKRLEKYNNQRTQQDG 44 (55)
Q Consensus 21 ygrpynglgkrlekynnqrtqqdg 44 (55)
|-|||.||+...-.-.|++-.+-|
T Consensus 174 YPr~~TGLs~~~f~~~n~~~k~~g 197 (267)
T 1x7f_A 174 YPQKFTGLPYDYFIRCSERFKKHG 197 (267)
T ss_dssp BCSTTCSBCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 799877889999999999999769
Done!