Query gi|255764491|ref|YP_003065078.2| hypothetical protein CLIBASIA_02760 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 55
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 17:56:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764491.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oqg_A HPY188I; endonuclease-D 18.9 55 0.0023 14.6 2.8 31 2-38 71-101 (180)
2 2i3y_A Epididymal secretory gl 16.3 44 0.0018 15.1 1.3 31 4-39 58-88 (215)
3 1ujl_A Potassium voltage-gated 14.4 24 0.001 16.4 -0.5 25 26-51 18-42 (42)
4 1lyp_A CAP18; lipopolysacchari 13.4 54 0.0023 14.6 1.1 14 27-40 1-14 (32)
5 2r37_A Glutathione peroxidase 10.6 86 0.0036 13.5 1.4 30 4-38 40-69 (207)
6 3hfe_A Potassium voltage-gated 8.5 1.2E+02 0.0049 12.9 2.2 24 23-46 3-26 (31)
7 1x7f_A Outer surface protein; 7.3 1.2E+02 0.005 12.8 1.0 26 17-42 170-195 (385)
8 1j9j_A Stationary phase surviV 5.6 1.7E+02 0.007 12.0 1.3 10 43-52 215-224 (247)
9 1zg2_A Hypothetical UPF0213 pr 5.2 1.8E+02 0.0074 11.9 1.8 24 15-38 11-38 (107)
10 2p0o_A Hypothetical protein DU 5.2 1.8E+02 0.0074 11.9 1.0 27 15-41 142-168 (372)
No 1
>3oqg_A HPY188I; endonuclease-DNA complex, restriction enzyme, HPY188I, inter GIY-YIG nuclease, catalytic mechanism; HET: DNA; 1.75A {Helicobacter pylori} PDB: 3or3_A
Probab=18.90 E-value=55 Score=14.57 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=25.1
Q ss_pred CEEEEEEECCEEEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 2599997060468998943688521378888852224
Q gi|255764491|r 2 LLNILIVNDQIKTISLECEYGRPYNGLGKRLEKYNNQ 38 (55)
Q Consensus 2 llnilivndqiktisleceygrpynglgkrlekynnq 38 (55)
++-+++|||.|+-|.-. ..||-+|+.-|++-
T Consensus 71 ~vY~~vvdg~I~kIG~T------~~gLkkR~~sY~~G 101 (180)
T 3oqg_A 71 LVYVFVIQGKIFKIGHS------ITPITKRVQSYNCG 101 (180)
T ss_dssp EEEEEEETTEEEEEEEE------SSCHHHHHHHHTTC
T ss_pred EEEEEEECCEEEEECCC------CCCHHHHHHHHHCC
T ss_conf 79999999999994287------63266768887173
No 2
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, structural genomics; 2.00A {Homo sapiens}
Probab=16.33 E-value=44 Score=15.08 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=24.3
Q ss_pred EEEEEECCEEEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 999970604689989436885213788888522245
Q gi|255764491|r 4 NILIVNDQIKTISLECEYGRPYNGLGKRLEKYNNQR 39 (55)
Q Consensus 4 nilivndqiktisleceygrpynglgkrlekynnqr 39 (55)
-+||||- .-.|.|-.-|.+|-+-.++|.++.
T Consensus 58 vvLIVNv-----AS~CG~t~qy~~L~~L~~ky~~~G 88 (215)
T 2i3y_A 58 HILFVNV-----ATYCGLTAQYPELNALQEELKPYG 88 (215)
T ss_dssp EEEEEEE-----CSSSGGGGGHHHHHHHHHHHGGGT
T ss_pred EEEEEEE-----CCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 8999980-----467898746999999999846598
No 3
>1ujl_A Potassium voltage-gated channel subfamily H member 2; two helices, amphiphatic helix, membrane protein; NMR {Synthetic} SCOP: j.12.1.1
Probab=14.39 E-value=24 Score=16.45 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13788888522245476789999987
Q gi|255764491|r 26 NGLGKRLEKYNNQRTQQDGKQIREKY 51 (55)
Q Consensus 26 nglgkrlekynnqrtqqdgkqireky 51 (55)
.-|+++++++-|..+. .|--|+.||
T Consensus 18 d~La~~i~~pY~~~~~-~GPSIkskY 42 (42)
T 1ujl_A 18 HNLGDQIGKPYNSSGL-GGPSIKDKY 42 (42)
T ss_dssp HHHHHHHCCSSCCCCC-SCHHHHHHC
T ss_pred HHHHHHHCCCCCCCCC-CCCCCCCCC
T ss_conf 9999997576558899-898676569
No 4
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=13.39 E-value=54 Score=14.62 Aligned_cols=14 Identities=50% Similarity=0.797 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 37888885222454
Q gi|255764491|r 27 GLGKRLEKYNNQRT 40 (55)
Q Consensus 27 glgkrlekynnqrt 40 (55)
||.|||.|+.|.-.
T Consensus 1 glrkrlrkfrnkik 14 (32)
T 1lyp_A 1 GLRKRLRKFRNKIK 14 (32)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
T ss_conf 97879999999999
No 5
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consortium, SGC, oxidoreductase, polymorphism, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=10.59 E-value=86 Score=13.55 Aligned_cols=30 Identities=20% Similarity=0.087 Sum_probs=23.4
Q ss_pred EEEEEECCEEEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 99997060468998943688521378888852224
Q gi|255764491|r 4 NILIVNDQIKTISLECEYGRPYNGLGKRLEKYNNQ 38 (55)
Q Consensus 4 nilivndqiktisleceygrpynglgkrlekynnq 38 (55)
-+||||- .-.|.|-.-|.+|-.-.++|.++
T Consensus 40 vvLIVNv-----AS~Cg~t~qy~~L~~L~~ky~~~ 69 (207)
T 2r37_A 40 YVLFVNV-----ASYGGLTGQYIELNALQEELAPF 69 (207)
T ss_dssp EEEEEEE-----CSSSTTTTHHHHHHHHHHHHGGG
T ss_pred EEEEEEC-----CCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 8999977-----77789873489999999984658
No 6
>3hfe_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, trimer, alternative splicing, atrial fibrillation, cell membrane; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=8.54 E-value=1.2e+02 Score=12.85 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 852137888885222454767899
Q gi|255764491|r 23 RPYNGLGKRLEKYNNQRTQQDGKQ 46 (55)
Q Consensus 23 rpynglgkrlekynnqrtqqdgkq 46 (55)
|--|-.|.||......-||-|-|-
T Consensus 3 rg~ntigarlnrvedkvtqmd~kl 26 (31)
T 3hfe_A 3 RGSNTIGARLNRVEDKVTQLDQRL 26 (31)
T ss_dssp --CCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 765408888888989999999887
No 7
>1x7f_A Outer surface protein; structural genomics, unknown function, protein structure initiative, MCSG, PSI; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=7.30 E-value=1.2e+02 Score=12.81 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=16.9
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89436885213788888522245476
Q gi|255764491|r 17 LECEYGRPYNGLGKRLEKYNNQRTQQ 42 (55)
Q Consensus 17 leceygrpynglgkrlekynnqrtqq 42 (55)
..-=|-|||.||+...-.-.|++-..
T Consensus 170 cHNfYPrp~TGLs~~~f~~~N~~~k~ 195 (385)
T 1x7f_A 170 CHNFYPQKFTGLPYDYFIRCSERFKK 195 (385)
T ss_dssp ECCCBCSTTCSBCHHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 86657999878899999999999997
No 8
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=5.64 E-value=1.7e+02 Score=12.03 Aligned_cols=10 Identities=60% Similarity=0.840 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q ss_conf 7899999875
Q gi|255764491|r 43 DGKQIREKYV 52 (55)
Q Consensus 43 dgkqirekyv 52 (55)
|..-+++.|+
T Consensus 215 D~~al~~GyI 224 (247)
T 1j9j_A 215 DYKAVREGYV 224 (247)
T ss_dssp HHHHHHTTEE
T ss_pred HHHHHHCCEE
T ss_conf 9999869908
No 9
>1zg2_A Hypothetical UPF0213 protein BH0048; BHR2, structure, autostructure, northeast structural genomics consortium, PSI; NMR {Bacillus halodurans}
Probab=5.24 E-value=1.8e+02 Score=11.89 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=18.3
Q ss_pred EEEEECCCCCCCH----HHHHHHHHHHH
Q ss_conf 9989436885213----78888852224
Q gi|255764491|r 15 ISLECEYGRPYNG----LGKRLEKYNNQ 38 (55)
Q Consensus 15 isleceygrpyng----lgkrlekynnq 38 (55)
--|+|+-|.-|-| |.+||..-|.-
T Consensus 11 YIL~~~~~~~Y~G~T~dl~rRl~qHn~g 38 (107)
T 1zg2_A 11 YILECKDGSWYTGYTTDVDRRIKKHASG 38 (107)
T ss_dssp EEEECTTSCEEEEEECCHHHHHHHHHHH
T ss_pred EEEEECCCCEEEEECCCHHHHHHHHHCC
T ss_conf 9999388999999859999999998381
No 10
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05913, PSI-2, protein structure initiative; 2.15A {Enterococcus faecalis V583}
Probab=5.23 E-value=1.8e+02 Score=11.89 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=16.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 998943688521378888852224547
Q gi|255764491|r 15 ISLECEYGRPYNGLGKRLEKYNNQRTQ 41 (55)
Q Consensus 15 isleceygrpynglgkrlekynnqrtq 41 (55)
+...-=|-|||.||+...-...|++-.
T Consensus 142 ~acHNFYP~~~TGLs~~~f~~~n~~~k 168 (372)
T 2p0o_A 142 EAWHNYYPRPETGIGTTFFNEKNRWLK 168 (372)
T ss_dssp EEECCCCCSTTCSBCHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 998566899887879999999999999
Done!