Query gi|255764491|ref|YP_003065078.2| hypothetical protein CLIBASIA_02760 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 55 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 31 17:56:57 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764491.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3oqg_A HPY188I; endonuclease-D 18.9 55 0.0023 14.6 2.8 31 2-38 71-101 (180) 2 2i3y_A Epididymal secretory gl 16.3 44 0.0018 15.1 1.3 31 4-39 58-88 (215) 3 1ujl_A Potassium voltage-gated 14.4 24 0.001 16.4 -0.5 25 26-51 18-42 (42) 4 1lyp_A CAP18; lipopolysacchari 13.4 54 0.0023 14.6 1.1 14 27-40 1-14 (32) 5 2r37_A Glutathione peroxidase 10.6 86 0.0036 13.5 1.4 30 4-38 40-69 (207) 6 3hfe_A Potassium voltage-gated 8.5 1.2E+02 0.0049 12.9 2.2 24 23-46 3-26 (31) 7 1x7f_A Outer surface protein; 7.3 1.2E+02 0.005 12.8 1.0 26 17-42 170-195 (385) 8 1j9j_A Stationary phase surviV 5.6 1.7E+02 0.007 12.0 1.3 10 43-52 215-224 (247) 9 1zg2_A Hypothetical UPF0213 pr 5.2 1.8E+02 0.0074 11.9 1.8 24 15-38 11-38 (107) 10 2p0o_A Hypothetical protein DU 5.2 1.8E+02 0.0074 11.9 1.0 27 15-41 142-168 (372) No 1 >3oqg_A HPY188I; endonuclease-DNA complex, restriction enzyme, HPY188I, inter GIY-YIG nuclease, catalytic mechanism; HET: DNA; 1.75A {Helicobacter pylori} PDB: 3or3_A Probab=18.90 E-value=55 Score=14.57 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=25.1 Q ss_pred CEEEEEEECCEEEEEEEECCCCCCCHHHHHHHHHHHH Q ss_conf 2599997060468998943688521378888852224 Q gi|255764491|r 2 LLNILIVNDQIKTISLECEYGRPYNGLGKRLEKYNNQ 38 (55) Q Consensus 2 llnilivndqiktisleceygrpynglgkrlekynnq 38 (55) ++-+++|||.|+-|.-. ..||-+|+.-|++- T Consensus 71 ~vY~~vvdg~I~kIG~T------~~gLkkR~~sY~~G 101 (180) T 3oqg_A 71 LVYVFVIQGKIFKIGHS------ITPITKRVQSYNCG 101 (180) T ss_dssp EEEEEEETTEEEEEEEE------SSCHHHHHHHHTTC T ss_pred EEEEEEECCEEEEECCC------CCCHHHHHHHHHCC T ss_conf 79999999999994287------63266768887173 No 2 >2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, structural genomics; 2.00A {Homo sapiens} Probab=16.33 E-value=44 Score=15.08 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=24.3 Q ss_pred EEEEEECCEEEEEEEECCCCCCCHHHHHHHHHHHHH Q ss_conf 999970604689989436885213788888522245 Q gi|255764491|r 4 NILIVNDQIKTISLECEYGRPYNGLGKRLEKYNNQR 39 (55) Q Consensus 4 nilivndqiktisleceygrpynglgkrlekynnqr 39 (55) -+||||- .-.|.|-.-|.+|-+-.++|.++. T Consensus 58 vvLIVNv-----AS~CG~t~qy~~L~~L~~ky~~~G 88 (215) T 2i3y_A 58 HILFVNV-----ATYCGLTAQYPELNALQEELKPYG 88 (215) T ss_dssp EEEEEEE-----CSSSGGGGGHHHHHHHHHHHGGGT T ss_pred EEEEEEE-----CCCCCCCCCHHHHHHHHHHHCCCC T ss_conf 8999980-----467898746999999999846598 No 3 >1ujl_A Potassium voltage-gated channel subfamily H member 2; two helices, amphiphatic helix, membrane protein; NMR {Synthetic} SCOP: j.12.1.1 Probab=14.39 E-value=24 Score=16.45 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=17.2 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 13788888522245476789999987 Q gi|255764491|r 26 NGLGKRLEKYNNQRTQQDGKQIREKY 51 (55) Q Consensus 26 nglgkrlekynnqrtqqdgkqireky 51 (55) .-|+++++++-|..+. .|--|+.|| T Consensus 18 d~La~~i~~pY~~~~~-~GPSIkskY 42 (42) T 1ujl_A 18 HNLGDQIGKPYNSSGL-GGPSIKDKY 42 (42) T ss_dssp HHHHHHHCCSSCCCCC-SCHHHHHHC T ss_pred HHHHHHHCCCCCCCCC-CCCCCCCCC T ss_conf 9999997576558899-898676569 No 4 >1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1 Probab=13.39 E-value=54 Score=14.62 Aligned_cols=14 Identities=50% Similarity=0.797 Sum_probs=11.0 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 37888885222454 Q gi|255764491|r 27 GLGKRLEKYNNQRT 40 (55) Q Consensus 27 glgkrlekynnqrt 40 (55) ||.|||.|+.|.-. T Consensus 1 glrkrlrkfrnkik 14 (32) T 1lyp_A 1 GLRKRLRKFRNKIK 14 (32) T ss_dssp CHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHH T ss_conf 97879999999999 No 5 >2r37_A Glutathione peroxidase 3; plasma, structural genomics consortium, SGC, oxidoreductase, polymorphism, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} Probab=10.59 E-value=86 Score=13.55 Aligned_cols=30 Identities=20% Similarity=0.087 Sum_probs=23.4 Q ss_pred EEEEEECCEEEEEEEECCCCCCCHHHHHHHHHHHH Q ss_conf 99997060468998943688521378888852224 Q gi|255764491|r 4 NILIVNDQIKTISLECEYGRPYNGLGKRLEKYNNQ 38 (55) Q Consensus 4 nilivndqiktisleceygrpynglgkrlekynnq 38 (55) -+||||- .-.|.|-.-|.+|-.-.++|.++ T Consensus 40 vvLIVNv-----AS~Cg~t~qy~~L~~L~~ky~~~ 69 (207) T 2r37_A 40 YVLFVNV-----ASYGGLTGQYIELNALQEELAPF 69 (207) T ss_dssp EEEEEEE-----CSSSTTTTHHHHHHHHHHHHGGG T ss_pred EEEEEEC-----CCCCCCCCCHHHHHHHHHHHCCC T ss_conf 8999977-----77789873489999999984658 No 6 >3hfe_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, trimer, alternative splicing, atrial fibrillation, cell membrane; 1.70A {Homo sapiens} PDB: 3hfc_A Probab=8.54 E-value=1.2e+02 Score=12.85 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=19.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 852137888885222454767899 Q gi|255764491|r 23 RPYNGLGKRLEKYNNQRTQQDGKQ 46 (55) Q Consensus 23 rpynglgkrlekynnqrtqqdgkq 46 (55) |--|-.|.||......-||-|-|- T Consensus 3 rg~ntigarlnrvedkvtqmd~kl 26 (31) T 3hfe_A 3 RGSNTIGARLNRVEDKVTQLDQRL 26 (31) T ss_dssp --CCSHHHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 765408888888989999999887 No 7 >1x7f_A Outer surface protein; structural genomics, unknown function, protein structure initiative, MCSG, PSI; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12 Probab=7.30 E-value=1.2e+02 Score=12.81 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=16.9 Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 89436885213788888522245476 Q gi|255764491|r 17 LECEYGRPYNGLGKRLEKYNNQRTQQ 42 (55) Q Consensus 17 leceygrpynglgkrlekynnqrtqq 42 (55) ..-=|-|||.||+...-.-.|++-.. T Consensus 170 cHNfYPrp~TGLs~~~f~~~N~~~k~ 195 (385) T 1x7f_A 170 CHNFYPQKFTGLPYDYFIRCSERFKK 195 (385) T ss_dssp ECCCBCSTTCSBCHHHHHHHHHHHHH T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 86657999878899999999999997 No 8 >1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A* Probab=5.64 E-value=1.7e+02 Score=12.03 Aligned_cols=10 Identities=60% Similarity=0.840 Sum_probs=4.1 Q ss_pred HHHHHHHHHH Q ss_conf 7899999875 Q gi|255764491|r 43 DGKQIREKYV 52 (55) Q Consensus 43 dgkqirekyv 52 (55) |..-+++.|+ T Consensus 215 D~~al~~GyI 224 (247) T 1j9j_A 215 DYKAVREGYV 224 (247) T ss_dssp HHHHHHTTEE T ss_pred HHHHHHCCEE T ss_conf 9999869908 No 9 >1zg2_A Hypothetical UPF0213 protein BH0048; BHR2, structure, autostructure, northeast structural genomics consortium, PSI; NMR {Bacillus halodurans} Probab=5.24 E-value=1.8e+02 Score=11.89 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=18.3 Q ss_pred EEEEECCCCCCCH----HHHHHHHHHHH Q ss_conf 9989436885213----78888852224 Q gi|255764491|r 15 ISLECEYGRPYNG----LGKRLEKYNNQ 38 (55) Q Consensus 15 isleceygrpyng----lgkrlekynnq 38 (55) --|+|+-|.-|-| |.+||..-|.- T Consensus 11 YIL~~~~~~~Y~G~T~dl~rRl~qHn~g 38 (107) T 1zg2_A 11 YILECKDGSWYTGYTTDVDRRIKKHASG 38 (107) T ss_dssp EEEECTTSCEEEEEECCHHHHHHHHHHH T ss_pred EEEEECCCCEEEEECCCHHHHHHHHHCC T ss_conf 9999388999999859999999998381 No 10 >2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05913, PSI-2, protein structure initiative; 2.15A {Enterococcus faecalis V583} Probab=5.23 E-value=1.8e+02 Score=11.89 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=16.6 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHH Q ss_conf 998943688521378888852224547 Q gi|255764491|r 15 ISLECEYGRPYNGLGKRLEKYNNQRTQ 41 (55) Q Consensus 15 isleceygrpynglgkrlekynnqrtq 41 (55) +...-=|-|||.||+...-...|++-. T Consensus 142 ~acHNFYP~~~TGLs~~~f~~~n~~~k 168 (372) T 2p0o_A 142 EAWHNYYPRPETGIGTTFFNEKNRWLK 168 (372) T ss_dssp EEECCCCCSTTCSBCHHHHHHHHHHHH T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHH T ss_conf 998566899887879999999999999 Done!